>2429545_Cel_pol#LINE/CR1 gi|2429545|gb|AAB71070.1|  Hypothetical protein ZK250.1 [Caenorhabditis elegans]
MLANARSIASLEKLEFVHKFVASNSLDFLFVTETFLSNAFTDFSCSSPHYTCIRSDRLECHPKKCGGGTAVTAELFKNLNQLLDCPSYTYVLLGDFNFANTKWNSNFLPTGSEYLYNWMKFHDLAQMVNFPTRFSKLNSGTFLDLIFTNNSGVLQNLKPGTPFINSDHISIFFSLSLPQTTPAHSAPPKSFMNFRKCDFFNLNRYMVSYNWPKQLSFFATPDSKLNHFLKIFNELISDFTPQYPTLRVQSPKVTGRKLYRKLRKHHPDTESSVSKKRVKSRLKFLKKKNMAFENKLIHSKNSKSLFSYIRNRIKPSSSLTHFSVDNNNVDKPIEMAEVLVKEFSKSFVTHDPPFPTFPSCESTPSPVDTSPLTIASTILKLKPKIGYSLDNINFFILKKCCDSISIPLSLIFKEFITTNSFPSCWKTSIVIPVHKKGNSSDPKNYRPIALTHPLSRLFEIIVLNPIRKTFSHKISKFQFGFLNNRSCITAHLNASSNYHKILSVPNQFVDIILFDFAKAFDSVPHELLLCKLRNFGFDDNICLTLLVSYKALSLDPFFLVYINDLLDLFPPDVHVIAFADDLKLFSNNCQSLRSSIKIIENWCKIWQLKLAENKTKVLHVGKKNPKYKYYVNGQKIECCSKACDLGIWVDDQLTYEKHILVKVNAAMFKCRQILKNFRSLNMMFYFKLFNTYQPFARAKARAPSGFVVSRFLKHIFSLVFEFYNLRLKTALKQMSCFGLSVRI
>3834287_CE_pol#LINE/CR1 gi|3834287|gb|AAC71186.1| Hypothetical protein C49D10.1 [Caenorhabditis elegans]
MSSKMDSRNVGRCIYCHCCHYILGDFNLPQFKWNPSGCTNPSMQLINFMTSGNLSQMVTRPSRISNSGTKNFLDLIFTNVPETITHCDLLPNFLLSDHLSISFTLQMHTRRTNKKIADSTEPRILFRKCNFRELNAHLSSFNWERQLSYFSSTDTKLNHFLKLFNELIRFYTPTSPVRYYKTTSDKSRIRKTVKRNIPLVTAVNFKKRVKRELKFIKRKLAKQEYDVVNSKSPRSLFQFIKKRISYSPPLTCLTKEDVIITDPAQMCNEFIRTFAKSFTPECDPFPALPARQPHKYSIDFSPIRIAGIITKLAPKIGFSTDVINFFILKKCCHSISVPLSLIFSDSFNCGKFPSSFKSSIVIPVHKKGSLTDCNNFRPISLTHSISRLFEKVVITSLKREFHSNISSQQYGFQNSRSCTLALLESTSLIHRILSTRNNSFLNQRTSRVKVGNQISQDTLHVTSGVPQGTVAGPYLFLIYINDLLDQFPPDVQVFAFADDLKVVGDNHQSIQESANIVARWCDIWKLQLAENKSAVVHFGRNNPKFDYSINGVSIRKHNSFSDLGIVIDDNLKFEKHIISISNAALLKCRQLLRSFQSSNAQFYFKLYNTYVRPILEYGCEIFHPSTIALSDKLESPLRFFSRKVFQRCNLKFSSYYDRLSQFELKSTLHRRLLMILKTFYNIVTKSYHFPSLFLYVKCPRSKRFPYMLCSTGIPNKGLLHANLSLWNHVARLLPKIMSPSAFAARINSIPVTYLIPST
>7505077_Cel_pol#LINE/CR1 gi|7505077|pir||T23191  hypothetical protein K01G12.1 - [Caenorhabditis elegans]
MIANNIDILLLCETFLNDAFTENICSNSNISCFRADRPKSHPKKGGGGTAVFFKKELNLTPVSLQNIVYENHYCDLLVVEHNPSKVRFVLVYRPPSTTIQQTSELFKYISLMIENPLLHHVILGDFNLPSIRWVPDTIPFQSKIIADWMTSHNLKQLVYSPTRTSYMGTQNFLDLIFTDAPEYVHNVSASSPFMSSDHLSVEFEMPLNQKRAKPTPLTEKKLHFRKCDLMKLNAHFFSFNWPKQLSFFSTPDSKLAHFLRIFNELIADYTPLMSHPPRVRNVPVTGKKLYRTLRKRHPKSLSTNLKKRVKLRLLSIRKNIKKHESKIIESKNTRSLFALVRSRISQSSSLTHLSVNNSIMRDNTDMANEFAKIFSKSFEKSPPDFPALPALEPVITPIDTHPLTLSNLIKKLKPKLGYSRDNINFFILKKCADSISLPLSLIFSEFLSTKTFPVCWKESTVVPIFKKGNASDPENYRPISLTHPLSRLFEKLVLQSIKKTCANKLSKIQFGFLNNRSCTLAHLNSSTFCHSILSHPRKFLDIVLFDFRKAFDTVPHNLLILKLKNFGIDDNLCDWFQSFISNRTSTVKVSNSMSTCKYSISSGVLQGTVTGPFLFLIYINDLLEQFPADVHVTAFADDVKISSENIESIKKSISIIEQWCDIWKLKLAENKTQVLHIGKLNPKTDYLVNGHKISVCSKARDLGIWVDDKLAFDKHIHLIVNSAIFKSRQILKTFRSTNALFYFKLFNIYVRPILEFGCEVFNPKLKSLSEKLEKPQRYFSRLVFKRCKISYESYADRLIQVNQTTLKHHRLLLIAKTYHDIVTGTRHFPEFTKYLKKSKTPRFPYQLSPNGPFINNIFLHKYLSFWNKLAKLFNKPVSGETFTKRVSALPLDTMI
>17506149_Cel_pol#LINE/CR1 gi|17506149|ref|NP_493488.1|  predicted CDS, reverse transcriptase family member (1O840) [Caenorhabditis elegans]
MRSYRYFLKPNETKTTTSKNLSSIRKLIRKRMKCLKGIPPLIHNNSTILDDSEKCSIFSQTFMDNFSSPQVSTSPQQSVVSPSSANNPNACKYLFEPYIVKQILRKLTPKIGFSLNYVNFYILKHCATPLALPLSLIFTQSFEEAILPDAWKHATVLPIPKKGNPAIPSNYRPISLTDHIARVMEKVICSRIRIDYRHLISPHQHGFLDYRSCTTSLTRSTSLYHEILKQHNSLDVLFFDFSKAFDQVSHIKLIEKLEHIGIHSNYTRWFESFLTNRSFSLKVNSITSTQKYSVPSGVPQGTVSGPLLFILFINDLLHSIPPTVHFSCFADDIKLFGHSPSELQAAIDLIANWSKDNQLPLAPAKTALLQLGKKNSKNVYTVDNITVSPTNSVRDLGLYTDSKLTFKPHINRATSLALLRAKQILKCFSSSSPKFYINMYKTYVSPILEYGSVIYSPPPTSNLSSTLESLLKYFSKRVLQRCNFKYKIKNAPQTHNAFSKSYENRLKILGISSARSLRLRAQLLLLYKILTGAAHFPKSSDFVTLANSSRRPMLIKIKNPKCRSFFSQVVPIWNSIVRNSSFFLSPSQFLLLLDCQISKF
>17562164_Cel_pol#LINE/CR1 gi|17562164|ref|NP_504664.1|  predicted CDS, reverse transcriptase family member (5H34) [Caenorhabditis elegans]
MKLWEFMLSTMIFHLTIVTKFFGRSKCPNSEPIFSGIFQISLLLRFDLRPISLTSHLCRIYERCLLRKILQYLEEKQYWNSAQHGFRPRKSTITCMLEAVNDWTEALDKGNQVDVIYLDFAKAFDRIPHCQLLEKLISLKINKHLINWIIAFLSDRTFQVKVGETLSNSKHAECGVPQGSVLAPLLFDDLKLYTDIPSNSSNSHHLQKAIEIIVQWSKTTKLALNNDKTVCISLGKNTTDFQYTIENSPIVRNTVVRDLGFQIDLNLSFSSHWKKALVHAKSMIHQIFLNYCSKNTRLHTLLYKTFVRPILKYGTEISSPSKKQDIKAIEPVQNSFTRKLYSRQKGKYIRTDDPECSSTRQSFRPFNLRSSP
>17564434_Cel_pol#LINE/CR1  gi|17564434|ref|NP_507366.1|  predicted CDS, endonuclease/exonuclease/phosphatase family and RNA-directed DNA polymerase (5R694) [Caenorhabditis elegans]
MPPKKKVDSIPKDTDINKSLLVEDQSTSMDIDAEMTSDSPKSKRKRFINVKKSAVPTIGSLNAKVFKLEALCNSLDLIVRSQQIMIGKLQSELSKLHLEGEKSKEKVSGTDNIDCASPLSLRKVRSPTINSVFIKKPAANRALYTSVIQKNPILKQVSDTLELVSTTHSYEKKSNLAVLEHLPDAKNPDQVSSDFDLVKSFSLEFSLPVPTEVFRVTCKNPNIVSRPTKVRFSSESHRDEFLNGFYKNWRSFSAIPKSSRPIRARRDLTPLELVGLRELRKEAYEANKAAGCIAHVVRDLEIVDLVTPRPFPTYTIASPEKLAFVHNFLASNSIDILFVTETFLDDKFTNSLCSNPHYTCIRSDRLNCHPKKHGGGTAVFFQNKLALTPVFIPPSFYPKHFCEILALDHKPSKTRFILTYRPPSIAVRRTSELFNNLNHLIDIPTYSFVLLGDFNFANTRWNSNNLPLNSEYLFNWMKFHNLVQLVNFPSRFTSSNKGNYLDLIFTNNPDILQNLKPGSPFINSDHVSIHFSLALPHTPTPVILPKSFLNFRKCDFLQLNNHLAAYNWPKQFSYFATPDSKLNHFLKIFNELISDFTPRCSITKAQCQKITGKKLYRKLRKLHPNSISSVLKSKVKPRLKFLKKKNVNLENKIINCKNSKNLFSFIRNRIKPSTSLTHFSIDNVNVDNPLLMAEVLVKEFAKSFTTHDPPFPTFPSCQSTLSPIDTSPITIASTILKLKPKIGYSQDNINFFVIKKCSDSITIPLSLIFNEFLTSKSFPSCWKTSIVVPVYKKGNSSDPKNFRPIALTHPLSRLFERIVLNPIMKTFSPKISKFQFGFLNNRSCTTALLNASSIYHKILADPNQYIDIVLFDFAKAFDSVPHELLLSKIRNFGVDDNLCAWFRSFLSNRVSKVKIGDCLSDSSYKNSSGVLQGTVTGPFLFLIYINDILEQFPPDVHAMAFADDLKLFSNNCKSLKSSISLIEAWCTKWQLNLAENKTNVLHIGKKNPKCEYYVNGQKIHSCSKARDLGIWIDDRLAYDKHIIIKVNAAMFKCRQILKNFQSLNMPFYFKLFNIYIRPILEYGCEIYHPKSSSLSAKLEQPLRFYSRHVFKRCKISYDSYDHRLIQADQSSLEHRRILLILKTFHNIITGKYYFHNLAQYLKTSKSPRFPYQMTAIGKTNNNSFLHTHLTIWNKISKLFPVPVSGNTFFKRISCLPLNEYA
>59799395_Bgr_pol#LINE/CR1 gi|59799395|gb|AAX07243.1|  reverse transcriptase  (scorpion) [Brotheas granulatus]
ISPVVLKNCAPELTPVFCRLFKISYNTAEFPSPWKLSHVQPIPKKGDPTIPSNYRPIALTSILSKVMEKVINSQLLTHLETAALLSDRQYGFRHGRSTGDLLAYVTHTWNECIEKFGESVAVALDISKAFDQVWHRGLLNKLPSFGLSAKLCKWISSFLSNRSIRVVVDGATSDAHLLNAGVPQGSVFGI
>AGAM2_pol#LINE/CR1 3-1751 (fraction) [Anopheles genus]
NFIRLAELLQSTDWSFLEGNPDVNSALELFNTTLLALISDCCPLMPPRRSPPWSDARLRRLKQNKASCFRFYSTNGTQHSKLRFIAAHNVYRSYNRQLHTRYLIRVKFSLIRHPTRFWRYVESKRGNSSLPDVLTYNNVSTSSKEGMCNLFADRFKDCFTTDDASLSLEAALNNVPRDVVDIDVRDIIISVDTVLRALQQVKTSYNPGPDGIPTAILAKCREFLAEPLSQIYQLSFAQSTVPTAWKSSVMFPVYKKGDKNSAENYRGITTLPSCAKVFEIVIQNSLMYHCRSYISTRQHGFFPRRSVTTNLVEFVSNCHAAFTSGAQMDAVYTDLKAAFDRVNHRLLLAKLARIGLSTPLVNWFRSYISERSYYVQIDGVSSNVFESSSGVPQGSNLGPLLFSLFINDVTLAITEADCLLYADDVRLFRIVRNTSDSLSLQRSIDVFSDWCINNDLLISVDKCTSMSFFRIASPIRYIYSISGTQLPRCNTVRDLGVTLDRKLDFRQHYCDILDKANKMLGFIRRHSRELNDPHCLLTLYKSYVRSILEFSSTVWCPFSSVWSNRIEAVQKRVTRIVLHFTP
>Ag-CR1-7_gag#LINE/CR1 233-1228 [Anopheles gambiae]
MADHCLTCARASSSEELTYTCDGFCKRWAHRSCLGVSSAAVKDLIKEDSQILWLCHNCSENRRNGHSVMIAELTAALTDLKSQLSAEFQTRMDAAAESLKRTMLSSLDQHADTRPASHTSTFTIQRKTSTSKAPVLSSTPATELSNPAKRRLMDRSPPSVVATSPLLNGTAPIATSAHATLLLPPETPKFWLYLSRCRPTATILEVETFVKEQIGIEDVTVFKLVPLNRDVRTLTFSSFKVGLSPDYKEKALLCSSWPIGTVFKEFTDRRNAPISTLSTNPLTTTTTAPTNTHVPVTTNTDVSIHMETNNNITASTNNTAVSTSPPRSSQQQ
>Ag-CR1-7_pol#LINE/CR1 1216-4143 [Anopheles gambiae]
ITAAIATLLTHSHSKSPLKFYYQNTRGLKTKLSDLRISLEVASYDVIILTETWLDDSIPSSLFCDRKYTVYRCDRSSANSTCSRGGGVLIACSAKLLSLHIEVSQCSLELLWIQIKLNGHSLFVGGVYLPPNLSSNTDTLDSFFNTITLIQSRMKDRDLFVLCGDFNQPGLSWSQNEDYFAPLAVNPASSYFIDGLAEFNLRQLSGVVNIFRRQLDLVFVNELVTYSCSPVSCSIDPIVKLDHYHPPLEFVVNVPLPHNGNNVRDNKSELNFRKMNLEKFREIITNSDWNFLEIRTDSPSTVDVAVEQFSNIVKAALPLCCPRSKPSSRLPWYDATLRSLKADRTRALKKLGSTPSEYNRRVFKYAASAFRIYNRASYRLYLGRLQCMLYRNPKLFWSYAKKRRNPSSLPTSMSLGSVTTDNAADTCSLFAEHFANGLSRPESQPLTESEGIWPGLNSVAWAEGIVNVNTVSEALKKLKPSFSPGPDGIPASVLKKSPFLFVPLLVKLFNLSLSSSSFPLLWKRAWLVPIHKKGNPSVISNYRGISIQCAITKVFEHIIHTYVFKLTSSTIIPQQHGFFPNRSTTTNLMSFTSFVSSQLESVKQVDTIYTDFKSAFDRIPHSLLLNKISQLDVNNLFVSWLRSFLCDRSYSVKFNDMFSTPFSCSAGVPQGSVLSPLLFIIFINDVRTTLPPECFLCYADDLKIFLPVSSPRDCISLQNILDRFSSWCSSNSLTLCPDKCNVISFSRSQSPITYSYVLNSVQVNRVCVVKDLGVLLDRGLTFSHHIDSVVNQARKTLGLLKKIACDFSDPMCLKTLFCSLVRSILEYCSVVWSPTARTHVERIERVQRSFTRFAICKILGRLSSPIPPYEDRCRQLGLELLENRRSHAQSSFIAALLLGNIDSPSLLSSIPFYAPNRVLRNRPPLVIPSRRTAVGRNDPLLRAIRRFNCVYSMFDFNLPLSSFRSRIRTLHNPVLP
>Ag-CR1-22_gag#LINE/CR1 102-893 Fragment, via tfasty with CR1-5_AG_gag, 1 stopcodon. [Anopheles gambiae]
KRLFSELVSATNTSPAISLVAKRTTNINNNNINNNIAVPSLAEHNNINITNNITSRQPIAIYGTDNDSPNLPTVQNRFVPKMWLHLANIAPGTSCEQVVESVKRRLATTDVIAFSLMGKNFDTTLARPMSFKVRIPAHLRETALSSSVWPSNLRVREFILRDNRPASSHPLACLTPMNAHETPLKSINAVPIDNIPKPAEQTINEKPNSSSPSNVQPIVHNMEHSPIPADRTAQNNDVHHEHSSxSLRTQEASASRYSHTNTSC
>Ag-CR1-22_pol#LINE/CR1 933-3896 [Anopheles gambiae]
MFSVRDIKNISHAKPTDTALKPCDIHFHYQNVRGLRTKLTEFGLNTLDAKYQIIILTETWLDNSIPSSLLFDPGYSVYRCDRSLSNSMHTRGGGALIACSSLLNTRELTLPRNSLEQVWVTVRLSSCTIFIGTVYIPPNRANDTDTLTSVIESVSAIVNHAKTNDLIFLFGDFNFSAVSWSLAQQTFGHSSSFAHYVANSSSSVRSRFLDEINASDLYQISCIKNSLNRQLDLVFANFIAATYCIDLHPCPTPLVSPDLYHPAIDLTVRIPSTMPNPTLTQASRPRMNFYKTNFTRLDELITNFNSQFRISQFNSVDEALSIFIRFLLSSFDSCVPIITPKSGPAWSDRHLKKLKRAKEAALKKYTKYRSPVNKSILNETTRLYRSYNKIRYGGYLSRLEKNFIKRPKALWSFRKKHNSTNVTPKSIYHNDRAGSTASDMCDIFACRFEEAYTISTTDDNIITNALINTPNDVIDLNLTNISQESVLNVLKAVKPKASPGPDGIPAIILSRCCESIAPIFTKIFNFSLQQGEFPSIWKSSWIVPIFKKGDKEDAANYRGITSLSAGAKVFEKVIQTSLLTASYHYISPQQHGFVPKRSTITNLVDFTSQCLRNMDSRIQTDAVYMDLKAAFDSIDHNILLAKMNKLGLGRNLICWLESYLVNRSYAVSFSRCHSRSFIASSGVPQGSNLGPLLFVLFINDLSYVVPAANHLMYADDIKIYMTIKNDTDHSELQQYLLDFHQWCNRNRLSLCIEKCRVISFTRAREIKNTSYTVNGLPIERTNTMKDLGVILDSKLSFDQQTEEVITRGNQLLGMLFRITRDFKDPVCIKALYCGIIRPVLEYACVVWKPSTQRLSERMESIQRRLSRYATRLLPWPPGSQLPPYESRLLLLGLQPLHIRRRTAQQLFVAGLLQNNIDCPSLLQQLNFYAPAVQLRSRPLLALNRSRTGYGSRDPLNSMIRVFNEVRHLFDFGTSVQSFKNCLRSELLR
>BfCR1_pol#LINE/CR1 gi|17529698|gb|AAL40415.1|AF369891_4 endonuclease/reverse transcriptase [Branchiostoma floridae]
MGEAWKRGIECETCGGWFHASCQNIGTQTYSDLGASDVRWYCELCNAPNYSTVSYDLYDVESEIFDHDAASGGNFTFCSDDSFHPTHSSTPTRQSQQNKNLNRPIRILNVNFQSVRGKVPELDNLIQSLRPDIILGTETWLETPEISSSEIFPTGYTKVYRKDRNKYGGGVLVAVSDLLEATMETSLDRDCEIVWAKVKLRGKRDLLIGSYYRPHEGLQESLKEMAESVRLACQSRNAIVVLGGDFNLPDWDWKEKVLKPGSSYPNIHRQFIDIISDLGMEQIVEKPTRGENTLDIIVTNHPSLFPRIEIVPGLSDHDIPYAELQISNARVRQKERQVMCFNKADWDSLRKATKELTDSILSTHADKPDVEAVWSDLKTGLQERVQEFVPSKKIRARKSPPWINHKTLQLIRRRDKIHKKYKKTGRQDLFQEFKSLKRKVQRQLRQQYWSHVQGLITEDCHDQPKPTKKFWTFIKSKRNEITGISPLKKEGKLVTDDKERAEILNHQFQSAFSSREDLTIEEFKLRTQMPPPNPNQPLLEDITITTFGVEKLLQNLDPTKASGPDQISPRVLKEVATELAPSLAFLYQASLDNGIVPDDWKCAHVCPVFKKGERYKAENYRPISLTSIPCKLLEHILVSEIMKYCEKHDILCTQQHGFRKGRSCETQLLGLVDEVSTTLENGHQEDLLVLDFSKAFDKVCHSLLVYKLQHYGIDGKVNAWIRDFLSNRKQAVIVNGTRSEYVSVESGVPQGSVLGPSLFLLFINDLPAGLSSTARLFADDTACQKVIKVARDQDLVQEDLHKLALWEQKWIMSFHPEKCITVHMSRSRKQMEREYELHGHKLKACDQVKYLGITLTRDLKWSPHVTNITNKANRSFGFIRRNIKVNSIAIREVAYKALVRPTLEYSSSVWDLYTDKDIMTIEKVQRRAARWVCQRFRQTSSVGEMLESLQWETLQQRRKRARLITFFKIHHGIVTVNTSSPPTVKRQTRLTRNVHPLTYVIPRCRTTYRQMSFFPRTILEWNSLPAETVTVPSIAAFREKMAHLN
>CR1-1_BF_pol#LINE/CR1 1311-4778  [Branchiostoma floridae]
MELHYTCIFLALCLMIGKTQPGSQPKDKQEMKEVHVTCTFRTDCTSDWATFAFMIKHSGVNGTPFSHKKTMIHNDSTKLSLIMILLLSGDIEINPGPRPPKCPCGSCNKAVQNKHAAICCDDCNTWYHKDCIELGSQVYTVLATHRSYSWICCDCGIPNFASDMFDITDDSFHSVNSFDTLNSSTSLPGDTPTATSTPLRSKQGKTHTRGNGHKKGSKAKLLLVNCQSVRNKTAELATVIDTYKPDILAGTESWLNENISSSEIFPDSYIVHRKDRQTGPGGGVFQANRDDLIVTHRTDLDTDCEIIWTQTQLAGKKPLMIGTYYRPPSDQGSSLDELDSSINKMGTKINSDNVIIFGDFNTPGINWDVSTTDNAQNHTGQAQKLLHLVDNHGLFQTVQEPTRNGNILDLVLVNNPNIIEKTTVVPGISDHDMVLVDVNLAPKQNKKPKRKVYIRTKSDEPAIKNDLEDYATNFNQRTKDMSVTQKWDDFKGKMKHTMNKHIPSKMTSSRYNLPWFNRNLRRHCRKKQRLYNKAKRTGQEEDWNKYKKVKKGVQKSIRSAHSKYVANILGEAITDKPKTFWSYIKGLRRDLVGVATLKVGSTIISDSEKKAEALSSQFKSVFTEEDTTDMPSLGNPCTTPMEHIDISTYGVEKMLQGLNPSKASGPDQIPPWFLKMTASEIAPVLTNIFQQSLDTGEIPQDWRDANICAIFKKGDRAVPSNYRPVSLTCISCKLLEHIIHSHIMKHLEGHNILTDYQHGFRAKRSTETQLILTVHDIAGALNNKRQVDLAILDFTKAFDKVPHSRLITKLEYYGIQGSTLNWLKAFLTNREQTVVVEGKASAPVKVASGVPQGTVLGPLLFLLYINDLPDQLDSSVRLFADDCLLYIEVSAKNDSQLLQKDLNTLEEWQRKWLMQFNPDKCYIMHITNKRTPNVSPYQFCGQTLATTKSHPYLGVTLTTGLKWGVHVNKITTKAKQTLGVIKRNLWACPARVKSLAYTSLVRPNLEYAATVWDPYTKKDKDKLERVQNQAARFCTNNYNRDASVTKMKTDLQWTSLEDRRKMSRLCMMYKMTNKLVDVPTDKYLIPAQKRTRNSHDFKYQSFQARIDVFKNSYFPRTIVDWNLLSPSTVGASSLDSFKERLQLDVQKLGVTDRSV
>CR1-1_BM_pol#LINE/CR1 274-3162 [Bombyx mori]
MIYFFSLSLMANLKIFYQNVRGLRSKTNLFYRNIILCDNDIICLSETWLMPGIYDSELFDERFVVYRCDRNYNSRNDSLGGGVLIAVRRGITVFNLTCLPSNRNRSADIISIKINIKHNNVSKLLHLYCCYFPQCSSQFEDEIGFFEDISDTIITNPGDEFLCVGDFNIRNASWELIGVDGPARLLNGDRWDSLVFGLSNFLAFNSFKQFNSISNINKRCLDLVISNCACKVVRSSLPLVSEDDHHPALDIQIQGLDVRPLRSPGRSILLFHKSDYSIINEELSKIDWKQSFMNLDVDMAVGKFHEILDKIISDNVPVKVVRGNSNFPYWYSSALIKLIKEKRKFHRKWKCYGRLADYSSFSVLRERQKALKICCYNAHITKCEDDILKCSKQFWRFVKSKRSAGDFPNELFLNDRCSSDGSEICNLFNVHFGSAFLTNNTQSASSLSYTPASYDLNCVDISSFFISVGKVKQYLKNLDISKGAGPDGIPPVFLRQCYAQLCYPLHLLFNHSLSTGVMPRIWKRSFVVPVFKSGDKHNIANYRPISKICAIPKMFERIVYDFLFPLIRPHIIEQQHGFISHRSTETNLCEFLDYVLSSMEDGHQVDVVYTDYSKAFDRINFDILIEKLHGLGVHGDLLRWLESYVRDRSQAVTFNGFCSSFAPVPSGVPQGSHLGPMLFNIYVNDVSNVFRKSKFIMYADDKKVYKVIKSLNDCLELQDDLNNLFVYCQNNLLTVNTNKCTIITFSRGRSNILYDYSINGQTLVRTTVVRDLGIYLDSSLIFDFHVNEIVNKAFRMLGFILRVGKDFKRPSTLILLYNSFVRSILEYGSVTWNPQYNIYIQRLERVQKKFFKHLLYHCRRFNSPEPTEFVSLVDRRLLRDQMFLYKIINNEIDSSYLLSKISFKCSRISARSKQTFHMSTARTKYASNSFVRRSCRLYDAKFSNADIFCLSLVAYRKAVLECL
>CR1-1_CM_pol#LINE/CR1 1295-4004 via tfasty with PlatCR1_pol, 2 frameshifts. [Callorhinchus]
DLVAITETWLQGDQGWELNILGFSTYRKDRQCGKRGGGGGVALLIKDEIKTVERKDLNQKISDVESVWVEVRNNKGQKTLVGVVYRPPNSSYSIGQGINQEIRGACSKGNTLIVGDFNLHIDWENQIGKSKLEDEFIECIRDSFLEQYAEEPTREQAILDLVLCNETGLISNLEIKAPLGQSDHNMMEFNIKLESDIVKSEARVLNLNRANFAGMREDLAKINWETKLKDLTVDQQWQTFKEIVQNSQRAHIPLRNKNAMGKVVQPWLTRAVRESIKSKEKAYKTAKMSSKPEDWENFREQQRRTKKLIKREKIDYESKLAKNIKTDSKSFYKYIKRKRLARVNVGPLQAETGEIIIGDKDMAESLNKYFATVFTLEDTENIPKIEDQEDNVSEQLREINISKEMVLGKLSGLKTDKSPGPDGLHPRVLKEVATEIVDGLSLIFQNSLDSGTVPIDWKIANVTPLFKKGGREKMGNYRPVSLTSVGGKILESLIKDVVMGFLEDHNKIRQSQHGFTKGKSCLTNLLEFFEDVSSRLDRGEPVDVVYLDFKKAFDKVPHKRLLHKVKAHGINGNILAWIEEWLTGRKQRVGINGSFSNWQDVTSGVPQGSVLGPQLFTIYINDLDEDIECNVSKFADDTKLGGRVSSEDDAKRLQRDIDRPGEWASRWQMEFNVGKCEVIHLGRKNRKTDYFLEGERLDSVSVQRDLGVLVHQSQKVSLQVQQATKKANGMLAFIAKGLEYKSREVLLQLYRALVRPHLEYCVQFWSPYLKKDILALEGVQRRFTRLVPGMRGLTYEDRLNKLGLYSLEYRRIRGDLIETYKILKGLDKVDTEGLFPLVGESITRGHSLKIKGQPFRTELRKHFFTQRVVNLWNSLPQKAVDAQSLNIFKAETDRFLKNRGIRGY
>CR1-1_CQ_gag#LINE/CR1 158-1822  [Culex quinquefasciatus]
MQCYVPTCSSPFDQQYLWNCTGICNRKFHAACIGVKRGSEDDLQLHVLPICSLCRNNLHMEIDIRKIMQHHLEGSHMILTHIKTNDKTNQEALNELHNKIIGLQEEIKKSAEIASRILSAVLTQAPAMDFPLNEVRKAFEDTTSDQNQKLAESFCRIQEITSSHRDDIIKTIASAEKCPSDIILAVHDEVRALTSSINKLQDNEIEVRQKSLAEELNEQTVLEIESGWRLIGSKKIWKPDWTDFDARQRTRRLQEKEAEKARRRNRKHRQQIQHQQQQQSQQHHQQRRQQQHLQQQQSHQHLRRQQHQTNCNSDAGRNPSTPHFNLKDNQFDQDNASSSNFFTHSSTKLSDKELLDQARVEFSGQPPTTSNSNFINFRKGETINPYRKEKTPIVPPLNATTPQPAKTSSQTPEVTDSMFCLDPMKPPIVRLTEQSAVGDGRFLLARLREIKVYDNLRLYLAYLKDQKPDVCIDGLTLTSMHVFFASNGLPTEPEHLMNIFMEYNSTIGISPKQTLTDLETYRKYVTTRRLQYLQHSREAANKFYLPTTSSNFYKH
>CR1-1_CQ_pol#LINE/CR1 1849-4824 [Culex quinquefasciatus]
MTPSQEAVSTINNLSMSPKISSTEQQNANEILIYCQNFNRMKSPGKMKEISLNILSHSFDIILGTETNWDESVHPEEIFGNNYFVFLGNRNLNLSQKKSGGGVLLAINARLNPKEIVTEKHFQFEQVWAKATIAGQVHIFASVYFPPDHANKQSYELFFKTVEIITSKMEPEVKLHIYGDFNQSKVEFISDQENEAILLPVIGENETLHFLFDNIANYGLFQINHVKNQRNSFLDLLFTNCIEDFHVQESVTPLWKNEVFHTAIEYSIYVHKNTLPIDWEYEEVLEYNKTNFVEAKRKLLAIDWQNLFNNEGNVDELVGKFYTEINTITSETVPTRRRRRNNTGNKYPVWFTPQLRNLKNRKQKAYKLYRNNTNDTNLLNYLNISDHFFSALNSANEEYNSKVESEVKSCPKNFFNYVKSKSKSSNFPSQMQLDENVGSNSKEICNLFSKFFKEVYTSFSEEDRDRDYFSYIPEFPNDVSVNSLSETEVRQALKDLDSSKGPGPDGIAPAFLKNLAEELTYPLHHLFNMSINTGKFPQTWKKSFLVPIFKSGPKSDIRNYRGIALLSCIPKLFESIINEKIFQQVKNRITCKQNGFFKGRSTSTNLLEFVNFTLNAMHNRNFVEAIYTDFSKAFDRIDIPLLIFKLQKIGIQPNLLEWLKSYLTKREQIVRFQNVLSESIHVTSGVPQGSHLGPLLFILYVNDISFILKKINVLVYADDMKLYMEIGNANDSHVFQNEINLFYTWCSKSLLQLNVKKCNSIAFSRKHETPNITVLLGNQPVEKCKVVRDLGVILDSQLTFVEHYNTIINKAKSTLGFIKRFAFNFQDPYTIKLLYITYVRPLLEYCSIVWNPYYAVHQARIESVQKQFLLYALRKLNWTAFPLPSYEARCMLINIQSLQERRKFAMLSFINDIISQRIQSAALFSVIRNSIHEPSRTLRNSPLFRITAYTTNYLKNSPLNQMMRFYNENSQYIHFDMSKPELRKNLYNRNNI
>CR1-1_DWil_gag#LINE/CR1 641-1648 [Drosophila willistoni]
MVVCSKNNCIVATNAVDSHDYILCWLCDNAVHVKCAGYTGRIKESIAKGGGLKYGCDACREVENEMRSFMRRTRDSFDTLRAGFNKLQAEFTAVETQFRSLSLMNESPKRKRTSPWGVSVSVDPPASLIVPDRSHAPSTPNVQQLISFKSPVVNAISNELPVSPGNDLLKTMPIVVSDVSGQLPIPMEIADSSKSIEGPVNKLTAAVGDLSNVTAAADASGPRPLVGIPPKKHIFVSRLDPVVTSDDVIAYIRKKVNVSNIAVEKFKFSYSRDISSFKISVSANIFDTICREDFWPKHIIVKEYTVKKKNRQPIRLPTTTTNTIPATSASAGVSKN
>CR1-1_DWil_pol#LINE/CR1 1606-4482 [Drosophila willistoni]
YYSCHISICWCVKKLASSLNLGYQNVRGLKSKLPNLYVDSLSFEHNILAFTETWLKPDIADASVFSTNFSIFRRDRISRIGGGVLIAVDAALSSEMIQFSSTQEIEFVGVKVNFKSFNAFITCSYIPPLSDMVVYLNHLEAIQFVSSLVSSQDMLIVVGDFNLPALAWSLTDESTTLLPSLSHDFIDGLLGLSLSQVNPVLNSNGKSLDLIFVLDSSYCEVSRIEPFVLPEDKFHPTLNLKIDLPLLSPLLGSNELPLTRCFRKTDFASLNENIATTDWSYLYNCSDMNSAVRFFYDTLNSLFDICVPLGRLERLNKPPWFSRELSNLKNVKTRYYKKFQKTRRSSDYALYTVARSKFMMLNTQCYKNYLQRCKLQFSSDPKQFYNFVNSKRKTSVHPSFLSFQNKKASTDQAIADMFASFFKTTYSSTEYRASPYPYHLKKANCIFNPVIDESSILTELKLVKPVYSPGPDGIPGCILRFCANALCKPILKLFLLSVESSSFPSIWKESYIIPLHKNGKKSEASNYRGISKLSAIPKAFEKIITSQLQHFCSSIISPSQHGFVKRRSTTTNLLEFTSIIIKGFKNGKQTDVIYTDFSKAFDSVNHTLLLSKLSDIGFPPLFLSWVREYLTNRKQKVLFKSSFSVSISVTSGVPQGSHLGPLLFTLFINDLPSVIVHSRVLMYADDVKLCLTYKDTDSFSRLQADLKNFQSWCQFNLLNLNTTKCKVMTFFRNSPQLVTYILNNSPLERLNNMNDLGVLMDHKLNFNTHISTTVAKAMSVLGFIKRWSKEFDDPYTTKVLFTSLVRPILEYGSCIWSPQYESHQIRLESVQKQFLLFALRGLSWDRNVNLPSYSSRLLLINLPSLTNRRIMLGVIFMHKLLIGDIDSPELLAQVNLSVPCRRSRHPLIPLSLSRCSSNYAMHEPFRVLCSDYNLLSPVIGSEFSINMLKTSILSHLVNR
>CR1-1_HM_pol#LINE/CR1 370-3246  [Hydra magnipapillata]
MTKVTKNLKPKKPSPPPKYFNISFTNIRGLRSNFPSVESYLLQNSPDLLALSETNLNSAIPSSDVSVDGYYPLIRKDSNSHMLGLGVYIRINSPICREIRFESFDHSFMCFRLAPLHSITFLFVLYRSPSSHDCTLLDVISDQIDHALSLYPSANIVVVGDFNAHHTEWLGSNTTDPAGTKAFNFCVSQSLTQIVNFVTRFPDNPNHLPSLLDLCLVSDPSLCSVSPFSPLGGSDHAMISINLSSRTSFLGSPYHRTTYYYPKADWDSFRDFLRDGPWADVFSLSADKCASYVTSWIQAGMEAFIPSRRFQVKPHSTPWFSPSCAAAISNRNHFFHLFQKNNSLENKRLFIIARNRCKKVLSDAKLHYSQFTKSRILSQKLGSKDFWKIFNSIINKGRSNIPSLIHGTDLITSPKDKAELFAKNFSSNSTLESYGHSLPSIPVKQVDPLLDIQITPASVAKVISQLNSSTACGPDNIPVTVLQNCSPELSSILSKLFNKCLTESCFPACWKMASVVPIFKNSGENSDPSNYRPISLLSVISKVFESLINKFLTSHLESNKLLSDNQYGFRSSRSTADLLTAVTERFYRALDGGGEARAIALDISKAFDKVWHAGLLHKLASYGVSGKVFEIIKSFLSNRFIKVILEGQHSSLFPVTSGVPQGSILGPVLFLIYINDLPDNLSSKVALFADDSTLYSCLDKKSSLFDRLEQAADLESDLTSVIDWGSQWLVNFNSKKTQLLTANNYRNMVNIPILMNGNPLTESSSLRLLGLSLTTDLSWKPYIQSIAKLASAKVASLYRARHFLTSDSILYLYKSLIRPCMEYCCHIWAGSSNDSLSLLDKVQKRIVNVVGPGLSAKLEPLSHRRKVASLSLFYKYYHGHCSKELSSLVPSTKIHSRFTRHSAKSHSFTVSVPACSKNFYSSSFFPRTSILWNSLPSSCFPDSYNLQLFKSSVNRFLAL
>CR1-1_IS_pol#LINE/CR1 101-2911 [Ixodes scapularis]
MECTLYYQNVRGLRTKSSEFLSGVIGNSYTIISLTETWLEDTIPSSQYFPPCYSVFRKDRDYAATRQRYGGGVLTAVDTSLCARRRYDLELYSECVWIEVTCRDGLNFLIGNYYFPPHLSSDVFARHFRDLEGKLDVTKFRVHIYGDFNLPGIDWLANYNLITSDVTSLKASSLFDFIYFNGFEQRNTIQNSAGNVLDLVLVSTPINYISPITDPLTRVDHFHPPFAVSFCFPLRKQALCSYEYLLYSSGDYLNMYKYFQCYDWKPILNNKCADSAAEALTEVVSSAINDFVPKRVSRLNKYPAWFSKELRSCLRRKLHYHRLFKRSGLDKWYAKFSECRALAKWLFKKDESAHLHGLESDMYAKPQNFWKYVPTKKKRNSSVAPMRNSSGYTCDSIEIANMFAEHFKSCFSSASVPDNNATCHGTSDFLSFIPIDEPEIRESIRNMKSKLSAGSDGIPSFIVKGCAELLTPVLLHIFNLSIHSGIFPSIWKRSVVVPIHKAGDPSTVNNYRPVSLLCSFSKVFEMIMHKRLYRHFRHKMNPEQHGFLKGKSVETNLCSFLDYAVPLVCNREQVDVIYFDMTKAFDKVNHSTLLTKLDSYGLCLTYCQWFKSYLTCRTNYVRVSGSMSDYFSSPSGVPQGSNLGPLLFLMFVNDISLCAKNSKVLLYADDIKLFRRVQSHSDCVLLQEDALQISQWCAKNYLPLNEQKTRTMSLTRKRDSLAFSYTIGGSVITRVSVIRDLGIFIDSSLNFNHHVLTICNASFRNLGAISRFTRKFSSPVCLVRLFCCLVRTKLEYASSVWNCINLTASCCIERVQKRFIGIIYDRYFDRTCYYSYEQLLKKLGLCTLLDRRRLRDLMFLHKVVNGAVDSPLLLSTVCFHAPLRSNRFQSPFYPSALNVASPLTRMQLEFNKLDQSAVDIFSDLIVFRHRLESIICT
>CR1-1_Lme#LINE/CR1 93-2842 via tfasty with PlatCR1_pol, 1 frameshift. [Latimeria menadoensis]
MCDLESLIGCDDLDIIAVTETWWNDSNSWDTSIAGYNLYRRDRDLDKGGGVALYVKDYIEAHVKEDIKKNTVNTESLWVELRDGNRGKLVLGVFYRPPGSNEIQDLEMWEEIKKAAEMGPTIIMGDFNLPGIDWVNGRASAKVEQDFLELIDDCFMTQFVQEATRGNNVLDLLLCNREDWVSGVRVDEQLGTSDHNTIKFNIIRSEEIFKTKSKFLNFKRANFNRLRTLVEIKLMGLSMEGSVEKIWNDFKGILLEAIDQCVPLRNKGLKGGKCPIWLDSSTKELIKMKKRAFKAMKLNNNKETRLWYKKMRHDCKEGVRLAKKNFEVKLASEVKDNNKKFWGYIKQKRGNNPRIGPLKVDNTKGMITDASQTATVLNDYFISVFTKEEMSNLTKLAQEPPSGLAMCNSIQITSRMVADQLGKIRVNKSQGPDGMHPRVLKELSNEISGALAEIFQKSLETGVVPKDWRRANVTPIYKKGCKSDPGNYRPISLTSVVGKIMETIVKNSILVHLETQGVIKNSQFGFTKGRSCQTNLLVFYEAVTKEMDKGNAVDVIFLDFSKAFDTVPHKRLLLKLKQTGIGGNLFRWIQNWLMDRSQRVVVQGIASDWKDVKSGVPQGSVLGPLLFNIFINDLEEGVKSTLVKFADDTKMMKVLDSDSACDELQKDLDTLQNWAVKWQMKFNVGKCKVLHLGVNNPKRLYYLNDQKLESTDNEKDLGIIIDDKLKFSHHSNMAVSKANKMLGIIKRTITSRKMEVILPLYRALVRPHLEYCVQFWSPRLRCDIESIERVQKRATRLIEGMEGLNYNERLQKLHMFTLEKRRMRGDMITVFKILHDPDTMVHDELFHLVNESRTRGHNLRVRGGKFKTNLRKYYFSERVVNLWNMLPCEAVEAKSINVFKNELDKFLMRKNIVCYDY
>CR1-2_AG_gag#LINE/CR1 256-1506 [Anopheles genus]
MASVICKKCEGAISNDPIPCFGLCEHYYHDKCIGLSTPLLRDFKKSQNLFWACADCAQRLRAVDTLRFSHGLSRDAAYLLESLQSDFRDTSRSVQAASAGLRLELSSSLDCFRNEIALMKQESASSIRSVKDFIDSLTASHSMERNYSQAPLLTTLDEVKHGIKELDLMHRELLTSFNSLMNKLNSHLATHTTTSSAHHSAIPATHSTTTIPVAASKLTHQAVGENPSKRRLLDRSPDPSPTNTVTRAMLSSGTGLSCNNITTVPERPPRTWVFISRIAPDTPIEAIREMACSNIGTDDILVYSLVRRDRDLSTLSYVSFKIGVPDSHRAIALAASTWPRGISFKEFIDLNPRSVNVWRPTTAASHAPSAPVTRESDHHSSPPSINHTTQLRNADFTISPDHGPMSLPYTQYFQQA
>CR1-2_AG_pol#LINE/CR1 1559-4549 [Anopheles genus]
MEANPASNTHNPSDSLPPLITCSESTPGASRSLIPSIDRLNIYYQNVRGLRTKLDELRLSLSELDMDVLVLTETWLDGSIPSSLISEDAYVIYRCDRNSLNSNRCRGGGVLIACSSVLNTSTLSLPFDSLESVWTIVKLQNLAIYIGAVYIPPDLRSSEVVLDDLHESVSFVAGKLKPNDLMVLLGDFNSPSLSWQPSASCVNQFIPTGVSRENVSLLDGMSVNGLLQLSGIKNIRGRQLDLLFANAAFLECCSPVIASPVPLVALDNHHPALETSVLLTHSRPASSQRIPTARMFNFRKLDYQKLHRILADTDWSFIDADCDINQAVAAFTNVITSAFPSCCPLLKPAPNPKWSNRALRLLKSDKNRAQRAYRLNNTLHNLCVYKYAAKAYRLLNRHLYRRYVRRLQMRFTIDPGSFFRFANSRRGSASLPSTLFLDLSSATSNPDICNLFAKHFSSVFVDPSTFKVPLDVGLSYTPSDVISCNSVVVSESLVKSALSKLKTSFSPGPDGIPACVLKKCGNTLTPILTRLFSRSLSVGIFPSQWKLAWLVPIYKKGDRTLASNYRGISIICACSKILESIVHLSVMPCVKNYISTEQHGFMPNRSVSTNLMCFLSSLYHYLSSGKQVDTIYTDFKAAFDSIPLSLLVAKLRKLGFGGSILPWFNSYLENRSYAVKICGSFSECFLSSSGVPQGSVLSPLLFILFLNDCTSILPPNGFLLYADDVKIFLPVSSTADCLVLQSWLCKFSTWCASNGLVLCPEKCSVLSFFRSSTSITHAYSVCDAPIPRASLSKDLGVFFDPSLSFKEHTDYVINKANKSLGYICRMSTEIRDPFCLKSLYCCWVRSVLEYACVIWSPVQLSLLQRIERIQRRFTRIVFRRSLGHHSIPLPSYDDRCTLLGLAKLEHRLSVAQASFVAGILLNTIDTPSLLSRLHLYAPCRTLRYRFRLQLPICRTRFARNEPFVRAMSSFNSTSDLFDFNISYPVYRSRLRSFSVP
>CR1-2_BF_pol#LINE/CR1 318-3836  [Branchiostoma floridae]
MSLTISRSVVFLLLVLNSIQASTVGYGPSKVRRTGTPCLLFTGGNAPPSWYPVLSLNNNEPTPWLKINFGTTGILLKHAKILRTSDRLCLLYLCSVLMSQAVDLETNPGPRPPKYPCGSCGKAVTFKHKGVCCDRCDCWFHHDCQGLSSYMYPYLGNSNVSWICLNCGLPNLSTTFFDSFNIESDSNPFSPLSDSSPGMPLAASSPKSLTQNKARPTTRPIRLVNANFQSLRNKKLELETLVEETKPDILVITETWLDDSCNISEYFPTHLNMSVFYRNRPDDNHGGVLIAVTNEFICSQEPQLETDCEMVWVKIQLAGSKSLYVCAYYRPHVDDSNSLDNLEQSMNRICNKRNSHIWIVGDFNFPGWDWSDPQHPVLKPGCAYPGLHRQFLELLSDQNLSQVVDRPTRNDNTLDLVLMSNDNCVNRINTLPPVGDHDIVFVEADIHPRKIKAKPRKILQYKRTNWEKFRDEMEDFQTEFLDLAQGDASVDDLYNAFSSKLSQCVDKYVPSKMVGAKRHLPYVTPDLKRLMRKRDRYYRKTLGQTSHERKDKLNQYKKEIKKKLKECYWQYIESIITDIPVPGDTSDNTNNPPAKQGTKKFWSFLKSIKSERSGVSHLRNNGTLVSDSKSKADLLNQQFQSVFTNEPSDDPLPDLGPSPHVSMEDIQIEVSGVDKLLGNLNIHKASGPDQVHAHVLKELSSVLSPILQVIFQRSLDTGIVPEAWKEANIAPVYKKGDRSKPENYRPISLTSICCKIMEHIIASTMMTHFQANNILYDLQHGFSHGKSCETQLLSLTDDLAVNRNNGIQTDLVFMDFAKAFDKVPHRRLLHKLQYYGVRGNTLVWIQNFLLGRSQTVVLDGERSDPMPVTSGVPQGTVLGPILFLAYINDLPEHAANAKVRLFADDCILQMPIHDSSDCNKLQEDIDNICLWEQRWLMEFNPSKCEVMTIPSSKTPITHTYSLHNHPLNKVSTTKYLGVTISSNLTWGSHVDAITSKANKTLGMLRRCLRVASTAAKERAYKALVRPHLEFACSVWDPHTQDQVRKVEMVQRRAARYVTNNYQRDSCSVTALINQLGWQSLQSRRKNARLITMYKIIHNNISVPHASKLVLATRCSRRTNHAFKLQAIASKSNFYRLSFFPRTIQEWNELEPGVAEAGSLSQFKTELGRALLH
>CR1-2_CQ_gag#LINE/CR1 152-1762 Poly-Q region masked. [Culex quinquefasciatus]
MPCHINNCQITDASHLMQCSGSCGRSYHAACAGTQRNYENEITNYMIPLCRDCQGVISVEVTTRAVLLQQQKLTCDIKALIDANFKACNAFKQMDNKIEVVQDEYEGIATLLGEMQQQLNRLDKKIDDSTLNVCKKVSSILDDVAPADNASTLVKIDALTSVTQQIGESQSIIGERLKNINTELIFLSGRDPGPAVNEILEEIKAISANLPAGTEQTEAHHETLADELASSSASGSPNLKDNSGWRTLGNKRLWKADWTDYDIRTARRKEQSKLRRKANQRKRRRQHRRSSYTGTDDLDEIDYELDYSFFDNNFHLEQRNDRLHRLCHNQLAQHLVKQPVNLLQNPQHSQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTQAQLIHRSAQVYSETPSWMFRPAQRSSFSETGNFMN
>CR1-2_CQ_pol#LINE/CR1 1765-4701 [Culex quinquefasciatus]
MTPSCEASDNLILTSPTTASNNLIEILTYCQNFNRMKSAAKIDTINQAISGCLYTAILGTETSWDASILSEEVFSSNFNVFRNDRNLLSSGKKSGGGVLVAIKTDFDSEKLDSDVFAHFEHVWVKAQIAKETHIFASVYFPPLSPLSSYEDFFRNAEKIISSLDPESKIHLYGDFNLGAVDFMVDAENESILIPILGESDRLQVIFDKMYSLGLNQINHVKNQNNRFLDLLFTNMTEDFCVTEANNPLWKNEAHHTAIEFSLFVHKANNRPDGSDYEEIPDYNNANYPLIKRRLLEVDWKALLEKETNIELAVNTFYSIIYDILDESVPIRRKRRTIDKHPPWFTREVKNLKNRKQKAHKAYKSNSQKLDEYLQICSQLEVTIQFEFEKYHRKVESEIKSDSKQFFNFVKSKLKSSNFPSNMSLDNKIGKNSAEICELFANFFESVYTSFDENDRDRSYFSFIPQANNEITVDSLSLDEIQAALKALDSSKSTGPDGISPKFAKNVASELASPLYWLFNLSLKSGIFPSAWKKSYLVPIFKSGKKSDVKNYRGIALISCIPKLFEAIVNNKMFAQLKDYITQKQHGFFKGRSTATNLLSFVNYTLNEMDNKNSVQTLYTDFSKAFDRVDIPMLLFKLDKIGIDSNLLSWLKSYLTKRTQCVKFNGLISRLINVTSGVPQGSHLGPLLFILYVNDVSFIFKHINVSIYADDMKLFMKIKDETDASRFQNEINIFFEWCCRSLLQLNIKKCTSILFSRKINKPNINVKLDNQIVETCSNVRDLGVILDSKMTFIEHYNTMVFKATNMLNFIKRFSYNFKDPYTLKTLFIAYVRSILEYCSVVWSPHIKTHETRIESVQKQFLLFALRKLGWTVFPLPSYIARCMLISLETLVKRREFASLSFVNDLIANRINSPELLQTLNFYEPTRVLRAREPFALHFHRTDYAKHGPMNRMMETYNKYNNIIDFTMTKSTMKKQFYNQR
>CR1-2_HM_pol#LINE/CR1 559-3495  [Hydra magnipapillata]
MLRVKFFNKFKMTKVTKTIKHKKPSSSPSSLNLSFTNIRGLRSNFSSVESYLLQSSPDLLALCETNLSSAVSSCDLSVDGYLPLIRKDSNSHMLGLGIYIRKNSPICRETRFESTDYSFMCFRLAPLHSITFLFVLYRSPSSQDCTLLDVISDQIDQALSLYPSANIVVVGDFNVHHTEWLGSSVSDSAGIKAHNFCLSQSLTQIVNFPTRFPDNPNHLPSLLDLCLVSDPSQCSVSPHSPLGASDHGLISLKLLSHSSLPSESPYHRTSYNYLKADWDSFRDFLRDGPWVEIFRLPVDKCASYITSWIQAGMESFIPSRRFQVKPHSSPWFSSHCAAAIANRNHYFHIYQQNNSPENRRLFTTARNHCKKVLSNAKARYSQVMKSRISSQKLGSRDFWRIFNSINNKGKSVIPPLLYGSDFVTSPKDKAELFAKNFSSISSLDSTSCVLPDIAVKQVDPLLDIRITPASVSKVISCLDSSTACGPDNIPVIVLQKCSPELSSILSKLFNKCLSESCFPACWKAASVIPIFKNSGERSDSSNYRPISLLPIISKVFESLINKHLISHLESHNLLSDHQYGFRSSRSTADLLSVITDRFYRALDKGGEVKAIALDISKAFDKVWHAGLLHKLSSYGVSGNIFKIIESFLSNRSIKVVLDGQHSSSYSVTSGVPQGSILGPILFLIYINDLPDILTSKVALFADDTTIYSCHDKKPTLSDCLEGASELEKDLTSATAWGSQWLVNFNSDKTQFFSANRYRNNLDLPIFMNGNVLDESPTLHLLGLTLTSDLSWKPYIKSVAKLASAKVASLYRARHFLTLDSILYLYKSQIRPCMEYCCHIWGGSSNDALSLLDKVQKRIVNIVGPALAANLQPLSHRRNVASLSLFYKYYNGHCSKELASLVPSTKIHSRVTRHSIKSHPFSVTVPKCSKNSYSSSFFPRTSVLWNSLPSSCFPDSYNLQSFKSSVNRYLALQIXSFLFQ
>CR1-2_IS_pol#LINE/CR1 3-2294 [Ixodes scapularis]
RQHNNILNDQGNALDLCFSNTDGIRVARSELSMVPEDSYHPALDVVLSVFDPPVLSPSNGPSPHTSYKYSAGDYTGMYHHLSGVDWASILESSDINGQVYLLTTVVQEAMDMYIPLKTSKKSRFPIWFSRELRTLLKRKDFLHRRFKKSGLPKWEVEFKICRKRCKKILNRDRQAHSDSVESDLVKNPKKFWRYAKSRLGKNIESEIVLNQHSDSAKGMSELFADHFASVYINNNNCSSSILPHSDVFGDSLGSVVVDEECVRLCIKKMKPTLSAGHDGIPAAIVKAYHELLTPILCTIFNNSLTSGIFPDDWKLAVVVPVLKSGNSGDVLNYRPISLLSSFSKLFEMVIHQFLSFKFRSIVIPNQHGFMSGRSTSTNLVSFMSAASEVVCNRGQLDVFYFDLSKAFDVVNHNILLYKLSSYGVCGSVYNLLKSYLSDRXAYVRVNNTTSSLYKASSGVPQGSVLGPLLFNIFVNDVSRVILNSSFLQYADDIKLYKKISTLEDCIALQNDAYSFGRWCLDNDLRLNHSKTKVMTYSRKTHDIFFPYSYHGELLSRVSELRDLGVVFDSTLRFDTHVIRVVQSALRTLGAVSRITKEFKSPSAFFTLYCSLVRSQLEYASVVWNGISKTNSSSVERVQNKFISIFKYRYLENGDPCLNGVCNSQLVNLLSLQQRRVKADLLFLFKTLHGSINSPSLLSEVSLRVPRVPTRLQSSFYIARHFSNLNPIQRSAECYNRYSDTIDIFNSCGSKFGNAVQIFLLQEKG
>CR1-2_NV_pol#LINE/CR1 13-3447 [Nematostella vectensis]
MAGPFEAPLEILFLALLLSSKLDFDSPENFLIHPGLIYQQYVGQEAFLTSFSGRIRVNGRPGSAILDSPPTRARLLCGLLLLCGDISLNPGPAWKYPCGLCKKPVKSNQRGLQCDSCNIWNHAKCMDISIPSYESLANSSCLWLCPKCDASNFSETLLSASTLELSNSFNFLPSQTSSPVAKTTPRNSSTSSVLEHARKSSRPRHKQGLKVFNINFQSLKNKNCEFQAFLATESPDIVIGTETWLNPSVKTCEFFPSNYSVFRKDRPDGYGGVLLAVKDLSCHELYELNSDCETVWIKVSINRRKHVYIGAFYNPDSSCEALDELDRSLSKLQRKSGNSVIYLGGDFNLGGDICWETNTIARGSRHVTACEKLLEMCSIYSLEQVVDKPTRGDKILDLLFTTNSTLVDSVHVKPAMGDHGCVEIQTLVTPKLARPIRRKIFLYSKGNFVDMKRDLLEFSSVYFTNFTVRSLQENWDMLKGKLSSLMEEYIPAKMSSSRYNLPWFTHNLNKLKRKVQRLYNTQKRTGLESDKRKFRQTRKAYRYKLNKSYGDYINNLLGSSQREQPKKFWRFVKSKRQDNMGINLLHNQHNIAVSNSLDKANVLNGYFFSIFTKEDSSTAPSLNPNSSSPEMGKIIVTSNGVQKLLNSLDSNKAGGPDKLPTRILKELSQELAPLYTQLFQQSLDQGKLPMDWKIANVVPIFKKGKRSSPNNYRPVSLTSVTCKILEHVICHHVWQHLEQHGILSDFQHGFRKRRNCETQLIITCHDLVSAINQGKRVDAFILDFSKAFDRVPHRRLLYKLSYYGIRGSLLTWMEDFLTQRSQCVTLEGATSSQCSVTSGVPQGTVLGPLLFLLFVNDLPLNISSTIRLFADDCLLYRTIDGSNDSLALQNDLDALNRWERDWQMAFNVEKCHTMCFSTSRAKIPDHPYILNNRILERVYHHSYLGVLLSGDLKWDKHIAQITSSANQTLGVIRRNFRTASVDCKSKLYCSLVRPKLEYANSAWYPHLQKDKHRLDMVQRTAARVCYNNYLREPGVVTNMLRELEWPSLEGRRTLSRMSMFHQVVYGTVDIEGEPFLVPMDRPSRNGNSKRFHRTHSKCNQHANSFFPWSINFWNNLPGSITNIKEKGKFKEKLQQHLIDNGQWF
>CR1-2_XT#LINE/CR1 378-4318 via tfasty with CR1_1b_Xt_pol, 1 frameshift and 3 stopcodons. [Xenopus (Silurana) tropicalis]
MSCSMIAGVTQCASCRMYVVLEQQFHAAFTCERCRWVFLLESEVQNLRGELAALRAAANMGENRRLTEQPLAGAGVVGGGEGTVEVNEGDKFVTVKRGSRGRKGRGAGSQLVQTNRFAALGEDAGEGSSELACMERADSQSTLGAGTSNTGGGNSARKGRQAIVVGDSIIRKVDRVICRKDPTCRTVCCLPGARVRHVVERVDKLLGGAGEDPAVLVHIGTNDKVRGGGEVLKNDFKKLGAKLRARTSKVIFSEILPVPRATLRRQRELREINAWLRDWCREEGFGFLQNWADFSIGYRLFARDGLPPQxxWGSCFGGKDGxRVGGDFKLGVGGEGAAGNSVVDRIDEVVGIVRENGGGDLLRDTDNGREAHKLFTRHSHAGTSIKCMFTNARSLTGKMGELEVLALERKYDVIGVAETWLNESHDWXVNIGGYTLFRRDRGNRKGGGVCLFVKQELKANIKEEVMGVTEGAESLWVELLTDSKESTKLIVGVCYRPPNVSEEEEAQLLLQIEKAASLGQVIIMGDFNYPDIDWGNSTARTVNGNKFINLLHDNFMSQVVEEPTRNHAILDLVISNDPERIANVQVVEPLGNSDHNVISFDVWCRKQIYTGATKTLNFRKANFSSLRAALQGIDWGIMFSDKNTEQKWLSFKMILNHYCSQFIPLIRKSRSVKNHPMWLNSEVKKLIGRKRKAFKKYKSEGTVAAFNEYKHYNKCCKTAIRKAKIENEERIAAEAKTNPKKFFKYINSKKMQVEGVAPLSYSNNMVTADTEKADVLNQFFSSVYTVEEPVGQVPPNSCTVASAPTTQWLAQDMVLKGLHTINVNKAPGPDGIHPRVLRELGAELQWPLFLIFSDSLSSGMVPRDWKKANVIPIFKKGVRSQPGNYRPVSLTSVVGKLFEGLLRDHXQNYVVENAIMSSNQHGFMKDRSCQTNLIAFYDEVSKKLDSGDAVDIIYLDFAKAFDTVPHKRLLSKLRSIGLSEVVCTWIENWLQDRVQRVVVNGTFSTWNKVLSGVPQGSVLGPLLFNLFINDLGEGIMSNVSVFADDTKLCRPVNSIQDVTSLQQDLDQLAIWAAKWQMRFNVDKCKVMHLGCKNMQAPYTLNGTALGKSIMEKDLGVLVDNKLGCSKQCQAAAARANKVLSCIKRGIDSREEGVILPLYRALVRPHLEYAVQFWSPVLKRDIIELERVQRRATKLVKGMESLSYEERLAKLGLFTLEKRRLRGDMITMYKYIRGSYNNLSNVLFTSRSFQRTRGHPLRLEEGRFHLNIRKGFFXVRAVKLWNSLPESVVLADTLYNFKKGLDGFLASEGIQGYGR
>CR1-3_AG_gag#LINE/CR1 1057-2313 [Anopheles genus]
MAGICSACANDIVAADRIVKCQGWCNSEFHFSCSGLSEELSATIESCAQLFWACKACVKFHKDPRTAVLRSSTPYTHTSVDLLSSIADLKAGLRSELSQHTTAIKLELLEVLKAEIRSCLRSTHAATDLPSQRPIHHNSAPKLFNSVVKNIPGTITPTLQQYPSLAASLSVSANEPSSFTNMPPXYNPQTPLLRGSGSPLDSDTLDTIPHTDTRMWLFFTRFSPSVTTEQISLMVQVRLALDKRDVFVHRLTKLGADTSTLSFISFKVGIPATLRNKALSPKTWPSALTYREFRDYRTNNYNTNTCATTETNSMLDQNVTLATDTYHNPLSHSGGSAAMPTTTTDTLAQPVTISSPAMTTTDTALFTNEPHLDLNERMLVTTTPTRSPPECLAAPKKRPKRGNAKRTDESADAGPSDE
>CR1-3_AG_pol#LINE/CR1 2314-5046 [Anopheles genus]
QSCTASGDAPRSAHPSLSIYYQNVRGLRTKTTNLRLALSESEYDFIILTETWLTQSIPSSLLTDDHYHIYRCDRNLSNSALSRGGGVLIACSSSIPTCEIASPNTILEQLWIKTLLPGVSVYIGVVYIPPSHANDPAVMNALHDSVREISSRIKESDLLYVFGDFNKPDIRWELTNTSEATDCSPCYSVMHYAPLCNSVANTDFVDGLHSTGLFQLSGIANQSGRQLDLVFANLAATNILCDSITPLHSVNGTSALENSLPYVTHCSIPLLSEDFHHPSLDMMIYYPVQLSHTTNSHTRSTVNRNFFKTNVERMNSLIVSFDRNFDCSNFATIDEATDFFSVFMRSAINSCVPVAQRKSGPDWSNASLRRLKKIKSKAYADYSRTRSSLHRRIFFDALNNYRRXNRVLYRSFIRRTERQLFSKPTRFWSFWNKRRNIRSIPPSMSYNGZTSIDTSDICNTFANRFADAFTLPVHNPNTLAEATRNTPSDAIDFIIPTIDEALIARTLNDIKPSTSSGPDNIPAYILKHCRQSLAPILAKIFNDSLMRGTYPASWKHARMVPIHKKGSRLHASNYRGIVSLCACAKVFELILYNPLLTAVQNYMSPSQHGFLPRRSSTTNLAEFVGYCFDNMDRGTQVDAVYIDFRAAFDSISHDILLSKLKKLGFLDWHITWLRSYLTGRSYYISIGSHRSHSFTSSSGVPQGSNLGPLLFLIYINDLSFVLPPGQHLMYADDVKIFAPVRNDSDCVRLQTILENLDSWCSRNALQVCADKCQCISFSRARHPITFTYTMLNTALARTTCIRDLGVLLDQKMSFRPHIDSVVAKGNQLLGLITRTCSEFTDPMCVKSIFCAIVRSCLEYCCPIWCPLGVGDINRLEAIQRRLTRYAVRLLPWQSHHARPTYHQRCLLLGH
>CR1-3_BF_pol#LINE/CR1 56-3559  [Branchiostoma floridae]
MSLAVCRSVVLLFILTNAAKATVVGLSPGKVSRAKSLCLLSPGNTGPPSWYPVLSLNPSEATPLSGFYFGTTGLAMKQARCLKTTDKLCLMYLCSILMAQAADLETNPGPRPPKYPCGCCGKAVTFKHKGVCCDSCDNWFHHDCQGLSSFMYPYLGNSNVSWICLNCGLXNLSTSFFDSHTSVESPNPFSPLSDSSPGLPQASSSPKSPHVRRRTGGRPLRLVNANFQSIKNKKVELETLVEETKPDILVITETWLDDTCNISEFFPNHLNMSVFFKNRADDSHGGVLIAISNDFICTQEPQLETECEMVWVKIQLVGAKSLYICAYYRPHVGDATSLEQLGQSMDKICNQRNNHVWIVGDFNLPGWDWTDPQQPVLKPSCAYPGLHRQFVDLLCDYNMSQIVDKPTRNENTLDLVLMSNENCVNCVRTLPPIGDHDLVFVEADLHPCKHKAKSRKVYLYKRSNWEKFRDEMTDFKSQFLELANTDTNVDELYNKFTSKLSSCVEKYVPSKTTNDRKHLPYITPDLKRLMRKRDRYYRKTIGQNTPERKDRLNQFKKEINKKMKDCYWNYIEAVVLDIDVSDHDQGKSSAKLGTKKFWGFLKSMKSERSGVDHIKSNGILVSESKEKANLLNQQFQSVFTREPTDDPLPDMGPSPHPSMPDITIEESGVHKLLKNLNPHKASGPDQVHAYVLKELSDIISPILQVIFQKSLDTGTMPESWKEANISPIYKKGDRYKVENYRPISLTSICCKLMEHVIASAMMNHLDTNDILYDMQHGFRQGKSCETQLLSLMDDLAANRNNGIQTDIVLMDFAKAFDKVPHRRLLHKLEHYGVRGKALNWIETFLTGRTQRVLLEGECSDSVPVTSGVPQGTVLGPILFLAYINDLPNHAAYAKVRLFADDCILQMAVQEPEDCDKLQHDIDSICDWERTWLMQFNPSKCEVMSIPSSRKPLNHPYTLHGSIMTKVSKAKYLGLTISANLSWNCHVDNITAKANRTLGLLRRNLRIASVAAKERAYMALVRPSVEYGASVWDPHTAEQVSRVEAVQRRAARYVCNNYQRTASVTSMLKDLGWQPLSERRKMARLTTMHKILHNTISVPHTSSLVPAARCSRRTNHAFKLQTIASKNNYYRLSYFPRTIKKWNELEPSVAEAESLSQFKTELGRASLH
>CR1-3_CQ_gag#LINE/CR1 121-741 via tfasty with CR1-2_AG_gag, 2 stopcodons. [Culex quinquefasciatus]
MDVDDDPSPATDVSKLSEAVEKLSGIVNELSGQMKEKSSKKSFADVVFPGSKREREDDVNNEPPAKIKTVCGTRTIQHKIKTVVNERELFWVYLGRLDPCHTDEEIAEMTQECLDLPEQPKVKRHVKKDADTSKLSVVSFRVLLPDDLRDTALQPDTWPTGVTVREFDFDLRPSPRFRQLxASPHLCCxPGTLSQKPFGSAPCPRHS
>CR1-3_CQ_pol#LINE/CR1 788-4390 [Culex quinquefasciatus]
MRPGPVYGHGNGAFQAALAGKYIHSTRTNPRLDASLHYSELPTADKVMPSPEFDADIGLGRMYRGIKVDPRFPVTTEPLTASVASSSSHLSRPGLVNGTRSGVNYSLLSGKYLHFPSTIPPPDDPLVSSHFHPSHAEHDQPLPLIGPRQQNLLSAVAEVADHPGRTYHGNVECPRSPVTVAPSVSSGEYVCSSSPSRPGAVCGQGCGGFRPASSGEYTCIDPNSPALNDCTLQRPAVPNGVISVYYQNVRGLRTKIDDMYLASQDCGHDVIILTETNLKDDITSLQLFGSAFNVFRCDRSRKNSEKQSFGGVLIAVSKHYSNAHEVETARGNELEQLCVAASIQGENFLFCAIYVPPEKRSDVNLINEHIATIDELRGTKCADHTTVVCGDYNQSHVQWSLIGSIARPTSPLTAASTMALVDGMDYLNLCQTNLVHNCFGRILDLVFCSSQRSVAVDVAASALALPVDSHHPPLVCHFPIFKRPQERRGNSANPALRLLNFRKIDFAAMTTFLLSVDWSLCLTNLGVDEMANTFCSIIRNWMNQHVPTVKPRVSPAWSNSRLRQMKRLKNACQRALRRRRSVVNKMKFRRSSDAYRKLNSTLYKSYVLRVQTNLRRNPRGFWSFVNAKRKSKDIPDSVFLDQHESGSPEMSCDLFAQHFKSVFAAGCATDEEAAVAANNVPENLLDLSTFDVSADMVKQALAKLKSSFSPGPDGIPSVVYRRCADALVAPLSVIFNKSFSQQTFPSTWKQSFIVPVHKSGDKRNVRNYRGVTNLSAASKLFEIIVSKVIQRQAMRYLSDDQHGFIPKRSVTTNLLEFTSTCIGHLENKAQVDVIYTDLKAAFDRIDHNVLLRKLSRLGLSVQLVNWLRSYLVGRSLRVRLGTSVSAVFVNNSGVPQGSNLGPLLFILFFNDVLFLLGPGCALVYADDLKLFLPIKATDDCCRLQALLDIFVSWCRRNKLVVNISKCLVMSFTRSKRMISFDYSIDGVVLQKVDQVRDLGVLMDPKLTFDLQRVSVIAKANRQLGFISKISKDFRDPYCWKSLYCSLVRPILEYAAIVWLPYQLTWILRIERVQKRFIRRALRSLPWRDPVNLPPYPARCRLLNIQPLQSRRTTQQATFVAKLLNGEVDSPNLLSLINFRTPQRTLRDSTLLARRFHRTAYGFNEPVSSMIRAFTAVEDLFEFGESSVRFRDKINRTQTFIH
>CR1-3_NV_pol#LINE/CR1 17-3553 [Nematostella vectensis]
MALQIALSMMVTCLFMARLANGSEMWTKQLDLERFSFKFKPVSFVITEPNCSFTFACITEQSSRHRLASLPRSYHKSVSRVTLFLLIMASDCSLLNPGPVKYPCSACTKPTKSNQRAICCDECGQWTHAKCISMSYNSYLRYSNNPNLTWICSSCLSPNFSTRHALEDLSIAGRNSFAALGSLDSNERSPDSSLEMSSSETFEFPPGRVRSSTPLRNAPPNQRRAKLRCMEINCNSIQSSDRAAVFASIFATHDPDIILGCESKLSPDDPTYSSFPTEYTVFRKERRDIGGGGVFIAVKSGISAFERQDLTTNSEDESLWVSIQLAKTKTLHICSFYRPPDSPSIRLDYLSESLFKLFHSNKKSHPNIVVSGDFNCGDINWKCDLPEVTSHATASLMHKLLDMIRDHALTQYVTVPTRPASLKTLDLVLSSVPSLVSHVQVKAGMSDHDIVLFDINVKPRKSTRPPHKVYLYHKADMEALREDILSRTTEFLDQCTHNNLEENWSSFKNILIDAIDRHVPWKMTRAKPSLPWISRSIKRQMRKRDRLFKKAKRSCDKLSAAWVHYRHQRNKVVNLVKASHRIYLDSVIGGSLHENPKRFWSYVKQARCENIGIPTLRSGDSLYISDSDKAEVLNTFFQSVFTQDNGILPNSTPSVSNIKDISDMEFFQPGVEKLLAQLDSSKSPGPDGISPRCLKELSKEVSGMLTVIFQQSYNIGALPNDWLTAMVVPVYKKSNKADPANYRPISLTCLCCKTMEHIVLSHLNKHLSRFNILSNAQHGFRQGLSCETQLVLTFHDWATVLNKHGQVDALLLDFSKAFDKVSYPKLIHKLSRYGIKGNTLTWISAFLHNRSQFVTVNGSHSATCRVTSGVPQGSVLGPTLFLLFINDIAESSNSRLRLFADDTVVYREINTEQDHHALQADLNNLINWASDWQMSYNVTKCHLLRVTNKRKPSECTYYAESAALSQVPQCDYLGIKCNESLRWGDHCTKITSKASKTLGLLRRTLRPCSKEVKERAYLALVRPSLEYASSAWSPYTDSDVNRLEQVQKNAARFVCSDYRITTSTSQLVKTLGWDTLEDRRLRNQSTLLYKFHNNLIHCQPPDDLRRNENIRSSRRHSRTYHQLQANILAFNYSFFPRTIRTWNLLPAEVVNAADLPSFKSALAPAISELKVPSHLRRL
>CR1-3_NVi_gag#LINE/CR1 165-1358 [Nasonia vitripennis]
MSLNGSFLSAGSLDGRVMPIDDSLVTKRMPRLSVCVGCEYENCDCFGQGDINCVKCNRRFHEKCAGLSGCVKCSDDLDKVVCNLCLGPSTSVSSAHLSIGGSRVPASVPVSVAVGTSESAAAFPAPAQTIVSDDKFEELKSLLQGNYASIRESLTGIDDRFARLDSQLEQDRTERRAIRAEVAKLDARLRALEERPAAVLAGPVVVSGDGSAPLPDGRXVQALASLDSASEVQDQLYRSRNLLLYDVPAGGSDSDLATVKEILGKISSLDLDKISVRRFARPTSRGTFPPLVVRFSTSFEVIRMITYRSLLPSGISVAADLTPAQRARRRQLLEEASKHNRDHPDKPKTVKFVRGSLALIDAKQKTGVFSCQQKPKLIVVLRIKPSSPSTTKMLTHW
>CR1-3_NVi_pol#LINE/CR1 1368-4031 [Nasonia vitripennis]
PIFAPIFFNLLIYRTDIIVFTETWLQPALLSAELGLVGYRIYRRDRDLQAVGVSRGGGVLVAVRDHINSSELFVESSLEQIFIRISLPDTTMILGAVYLQPNSDTTRYQEYVDGLETVAEANADCQLVMVGDYNLPSVTWRSNPLQFAQTGYVDPEHRMNAELICGCFSSLGLSQLIPPHPSKGYSLDLLFASPGFIDLFELNEQLVPTDGHHVPSVFNANICCDSDFVPVSKRNFFAADYESIVNHLGEVDWDSILSCDCLEDILCGFYNVVDTCISKQVPLSRSNPSTYPVWYDRELICTIRDKKLAHKAWKLTGETSDEIEFKRLRAVCIRMSRSRYRDYVRSVETGLRSNINAFWSFVKGLKGEAGIPVTTYLDDLKAESESETVNLFSSHFSSVYDCNPASPLNHLLESRELISNVRVLAEDLRPFVRELKCTANPGPDNVPNVFVKRCWPALERPIVDIFNKMLANGYFPKAWKRSYIFPVFKHGDRHDVKNYRPISLISCIPKLFDAFLTDVLSQRLLCKITDLQHGFLPGRSTLTNLLIFNDFVSDALENSAQVDSIYIDFSKAFDRVDHGRLLAKLWNIGVRGSIFNLLSSYLSNRYQAVRINNSVSPAVLVSSGVPQGSHLGPLLFCIYIDDLVKQFRFANALLYANDVKIFMRIHSEEDVERLRADLNALSGWACENGLVINAAKSQVVSFYRGRTQLQFQYELDGSAIARTEVVRDLGVLFDSRLTFAPHVDYVVSRCRGLIGFVKRTTQDFSNISAIIYLYNTLVMPTFIYCCQIWSPYTQIAINHLDSVQHKFIRYLAYKSGRPMAPIDHDYSLIASSLGIPSIHSVHRYHDGLLTFKLLRKFMICPSICVAIDLYTSIWRIRTLGSFRPYLD
>CR1-3_TCa_gag#LINE/CR1 948-2117 [Tribolium castaneum]
MSVCYKCKSSVVNSIACLNCKKAYHPSCLRAFKNYSAIGQDLTSISACPCCDKLKSLQNPTSPTLNISTNTIFEDLGILKQETDLIKKTLDDLKTFITESPTTVCTFDKIDEYVRKSFDDLESKLISLLKDTLNREIEKLKNSIKNEVIAEISTNLNRTNDNIKTANSSDLTLKSTNSKNVSTQSVSKTNRYKVRIFADQKGRHCIDLLETYIPVSKYVIQSVVKPYSSLQELLKTENNNEQLGNNDFVVIYAGNHEAQKGKIPDENTLNELINHKFLNTNIILIGCPYFVNRPILNNFVYELNCNFYNVAKNNKNIYYLDSNDKIFDQFKTDNFVINKAVKRCIIKNLGDLITECQDHTNRSAVEQNPVATFLDTSLPSVDKSDSQSF
>CR1-3_TCa_pol#LINE/CR1 2102-4800 [Tribolium castaneum]
LSVFLNRFVCLQPSHSKISISINKKTVNSFHGIYQNVRGLKSKSVTFFNSFLSTSDEFDLIVITESWLDDTVLDGELFSDNYYVFRRDRDLRHLGIHRGGGVLIAVNNKYNCRQLDISNISRRSSPAIDLVAIKINVTSYQHLFVFVVYIPPSISFSDFDNFFDLLNNFDEINNDNVLFLGDFNTPLFSGFSKNNFSISLKHFASFHNFNQFNNIRNNRNNILDLIFSNMDCAVSKSSFSFVPEDPFHPSLEFTLDIVAKTPDKFYMNRDHVAFNFKKANFDCLYTTLQVVDWSELEKFSDVNEACRVFYETLYNCFELSVPKLFCRKNYRTFPTWFNTDIINCLRRKSNILKKYRRTKNMHFYEEFKKLRSLSKSLITTAYSQYIGHMENTISKDPKKFWSFVQAKKRNSRIPGVLYHNGNAISNPNDIVNSFAKFFKSVFSDMTLTSDSPSMMTNLNSFITVNEINEHEIIRVLKRSKDTLTAGCDGIPSFLLRDCAHIFSKPLVYIFNLILQTSTFPNIWKIAHVCPVFKTGDITQIQNYRPISILCNFSKVFESIIYDRIYSSVKRFISPSQHGFVEKRSTVTNLACFTQFISDALDRKGQVDVIYMDFKKAFDQIDHHLLLLKLDQYGFSGSLLSLIKSYLANREQRVKYRNYISDSYVATSGVPQGSNLGPLLFLLFINDICGSLSTCAKLLFADDLKIYTEIKSIEDCLTLQNNINAVVKWCNENRLYLNPSKCNVMSYTKKREFLEFVYDISSVTLHRTFIIKDLGVIFDTELAFSEHIRDVTARAIKSYGFIYRNCRDFKNLSVMKTLFFSLVRSKLEYGALIWHPIYKIHIDQLENIQRRFLKFLVFIIDGNYPIRGYDQNLLLNRFGLQSLQFRRICIIIKFLYNLIN
>CR1-4_AG_gag#LINE/CR1 363-1412 [Anopheles genus]
MDCAICSTTINKDPVVCIGNLPFSECNSAFHPECIKLAATCVKEVARNRGLCWMCEKCRDSRSDLFSSISCLMNTLKDELKNAIRSELDQRISQLDPNRVMPQEREKIAPTVSTISLTDKTFHTSTDTPMSPTPTPVKQNSLPHSQSRMLSDNEHINPTQAILHTGTANDHINTDTIQFIPAPEPKVWMFVTRIAPTVTEENMKMFILGRLKCTDCSVKCVIPRGRVTSSLKYVSFKIGIPSEFGELAFSPSTWPCGFVYRQFEFHQRTQKQFTPTLPVSCFPASNNSTARSFSTTNFMHNDVNCINVIPPTHTTQHSPSPSHHLKNANSPETHLTQNNSSGSTFLSQH
>CR1-4_AG_pol#LINE/CR1 1430-4327 [Anopheles genus]
MEPVLNTFNIFYQNVRGLRTKTSECFANTAIADWDVIVLTETWLDDSFPSELLFDNNRFNTFRTDRSAANSNKCRGGGVLVAINANYASSLCSTNTSTIECLWVRVKVLNVSLIIGSFYLPPDQSANMDTINAFCNSLHLTREKYKNDFFILFGDFNQPNLKWDINGKFPTLNLMLTRLSPTSQALLDELSFEGLRQLNTVLNHNNNMLDLVFANDKVTDYMRPIELCIESIVEPDGHHPALLTYFTLPQYSVPSSKPPRQADFNFRRTNFTDLVSALNQINWDSIADHDDINDSVAEFSSQMNELYEQFIPRFNVRAHPPWTNSALRLAKRRRSRALKKLHRLKNSTNQINFARASKIYKQLNRTAYANYVRKIEINIKRHPTSFWKFAKDKESCGRLPSSMQFEGNTITGDEEFCNAFASYFSSVYTNNSSVPSNSTSALSFINDEVNLCTPLINDDEVESAISLLKLSYAPGPDNIPSAILINCKAALIPILTKLFNKSLQSKCFPRLWKSSWMFPVYKKSDKSNVCNYRGISMLCACSKLFEKIMSRHMLQAFSPLISNVQHGFMPKRSIETNLIYLLNFCHSYIDKGLQVDVIYTDFCAAFDKVNHFLLLSKLSKYGVHTNVVEWLRSYLTDRCINVKIGTSLSATFHNLSGVPQGSILGPLLFIIFINDVVFAIPHVKLLLYADDLKMFLPVKYSDDCEMLQDSLNYFSAWCFNNEMLLNVSKCSCITFSKKKNPIIYNYKINEDSVPRFSQVRDLGVILDSKLSLSSHYQTIVTKALKLLGFVLRVSADFKDPFSLKTLYCSLVRPILEFASVVWCPHQITYIDKIEKIQKKITRVMFHRLPWSNQIPRPSYNVRCLLFGLETLQHRRTTAQITFMHKLLIGDFDAPDILNFICFSTPSRGLRSRELLRSPFRSTGFGANDPLLKMIDVYNRLGLSADFNQSVSQLRQHIQVSSRAII
>CR1-4_CQ_pol#LINE/CR1 581-3658 CR1-9_CQ_pol over 80% identical [Culex quinquefasciatus]
MRASRLPDATTSSPSYRTRSPASRSHQSRPGAGVGVGGGVSQSAPPGKYHPSFPHCTSDGPSPSSKLRIYYQNVRGLRTKVDAFFLAITECDYDVIVLTETWLAAEILSPQLFGSNYRVFRNDRNERNSVKRSGGGVLIAVASRLDCVSDPTPVCDTLEQLWVRLSVGASQRVCIGVFYFPPGMNRNIDLIKSHLDSIGSVISSLDLNDSFIQFGDYNQPGLKWIPSEEGGLEIDPVLSSMPLASSYLIDGFNLHGLTQLNSCINVYNNCLDLVLVNDVVLPKCAVFEAVEPLVPLDITHPALEMVVDVPAPTVTTEPPSAIQQPFNFRKANYAAIKEELSYVDWSFLETSSSIDAAVDSFQTVLNNIFAVHVPRRRPSQKPPWSNATLRRLKQLKAAALQDFCNHRSPFFQTRFKLASKRYRGCNRTLYRRYVIRTQHDLRKNPKNFWSFVNSKRKTDGLPPTLYLNDVAATTPEEKCALFAAHFKDAFNSRPASEAEIMAATRNTPANAFECSFTEVGNGQVTAAIDKLKLSYSAGPDGIPSSVIKRCSDVLLLPLSILFNLSLCQSTFPAKWKRSFMFPVHKKGAKSSIKNYRGITSLSACSKVFEILINSVLFESCKHYISTDQHGFIPKRSVATNLAQFVSHCLQEMDAGAQVDAVYTDLKAAFDRVDHGVLLKRLEVLGVSANLIRWLKSYLTDRVMRVRIGNSESDIFTSLSGVPQGSNLGPLLFILFVNELALLLAGGCRLFYADDVKIFTVVRSVLDCSTLQRQLDRFNEWCLRNFLTISIDKCNAISFHRKLKPVIFDYAIAGSTLARVTQVRDLGVTLDCKLSFTSHRHDIVSRANRQLGFIFRIAEDFRDVACLRSLYCALVRSILEFCSVVWCPYQSTWTAKIESVQRKFTRLALRRAHNPAGWSPYEERCRILRLDTLEKRRHISQASFVAKVLAGEIDSPWILAQIQVYAPERPLRQRPYLQLARRNTNYGQHEPIRFMCSRFNVFSQLYRPNISTSMFQQRARLWYSSQF
>CR1-4_NV_pol#LINE/CR1 24-3161 [Nematostella vectensis]
MAASHVSLSSVIILLAIRSLLLFAQPPIANRNGKETSFYIWRFCKVGFSNRPDFGNQHHSLFRPRRDFTRPNCYLVGLLLLCGDVASHPGPRAFSRGKSNCCTTVKCLYMNSRSVAKKRSELQALSIGKDLIFCVESWLNPNYLDCELLPSSADYTIHRRDRQSRRGGGVFLAVKNSIVSLRRCDLETDAELLACELRPNSRRKILAIIYYRPQDTDLEYLKQLKKTLRLASKAKYDQLIVIGDFNLSEIDWTTGAAKTGDCLTNYLCKIIKDNYLWQLIDFPTRGRNILDLILTSIPSKFQHIHGFDDIISTDHKLISFELDLNISKKTKTKRVVYNFKRADWTGLNESLKNIPWDLCFSQSDNIDSSLANWTDLFLAAVNEHIPKSKPRNVSDYPWIDHELRSLLKKKDAQRKKANKTGSLAAERKYNELRRAAKQMLSKKKKEHAEKLKSVISDNPKRFWTYVKSCTSNKPSPNFFRDGHAFVTDTKNMANLLNRYFHYIFSPSASEEFVSAQPTNREPVLGLGSIQLTVPEVLDVLRNLDSHKACGTDQIPGILLKNTAHQIAPSLCRLFNLSLSLGSVPALWKDANVTPVFKKDDPTLAENYRPISLLCILSKVLERCVFKRCFNFISPHIYQLQHGFLKGKSTVTQLVEVYHDIVDRLAGGKDIDVIHLDLSKAFDKVPHHLLISKLQQYGVTGSLLKWFVSYLTGRRQRVVLDGVSSSWLPVTSGVPQGSILGPLLFLVYANDMPNYVQQGSNIALYADDSKLYRSIDTASSSTSLQADLDSLYSWSLEHGMEFSASKCKVVHMSKKRSTKRPPYPYQLCGRTLDPVAQVTDLGVTITNDLSWGPHIEPMCAKANRVLGLVKRVCSDILDPTTRQLLYCTLVRPHLEYASCIWSPSTGKHKALIENVQRRASKFILNYPADVSYTERLKTLKLLPLEYRRDITDLVLLFKIKNGDVSISLASLLSPATSRYNTRNYHPNNYRLFSTHNQNYYRNSYFPRTVKLWNSLPSLMKSCTTLSSFRYQLTTHYLEKLAFYQPP
>CR1-4_TCa_gag#LINE/CR1 360-1100 [Tribolium castaneum]
MAEFNCCHCFKSVSRDTPIVVCDGCSLNIHCRCLKISENEIAFISQSRSPNIKLFCNRCNVTITAISEIKKLVNDIKTSFDERLSELESLIINNNTSQAINREEIIAESVDRSARACNVIMYNVKPVANKQDVDVVNDVLEVIDPSLVIGPENVFRVGKTVGDKPRLLKLQFKTQQMARLCLKKKSSLLQHPQFAHITISDDKTPGQLKHLNNLRDELKRRLDVGEKDLTIKYVNHVPKIISHQKN
>CR1-4_TCa_pol#LINE/CR1 1064-3880 [Tribolium castaneum]
PRTKNYFTSKKLNIYHCSMALLYTNIASLSSKFNDLLLEVTEFRPSIIALTETWLNPSISDDAVHIENYSIYRDDRLSQKGGGVCFYVDKIKISKFFKITQICISVKPYDSLWLKFEGNEQTFVIACIYRPPTGASFNNHENDKNLFNTIQSTINQYPNLIIMGDFNFPCIDWSAKNTTGQTIIEKQFSELLLENNLSQIVTEPTRFRSQQRPSLLDLVILSDVNLVSSLNVSNPVGTSDHSKIEIELQIMIYSEPNARIKTTSIVDYTRIDESLLTYDWNGLDSLNAEEQWKHFKSILQTCITTNSRLFTNRLRKDKPWINQHMLDKIKYKAKLWKKFKRKPTEDNFSAYKRFSNQLKSDLQIARCNYENSILNKPKLFYSHVRKFISSRVSVPLVRNASGLLCSDHTETANTLADSFAATYNLNINNNIPSFMPTSTFSGLSYINFTPDLVKSQLCAIKLNTAPGPDQIPPKLLRTCAASLSGPLAKMMTKSFLQGTLPYEWLQATITPLYKSGDKLDPANYRPVSLTSTCCKIMEKVIVKELLTYMRKNNLIPEHQHGFLPGRSVVTNLLSCTNLWTKMLDTNQPVDIIYLDFSKAFDKVPHNLLLAKLESYGVTGNLLDWIRAFLSNRNYCVKVCGKFSYSKPVLSGVPQGSVLGPILFLLYTADLLFSLDSYSAYADDIKLFANPLVTDLQDQLNLIFQWSEKWQIPLNIAKCCVLQCGHNNPKYLYHINGTLLSVKTSTKDLGVIVNDKLGWSEQCLASVGRARKMFYLLKHVFPNPSVSFISKVYITYIRPHLEFAIPVWRPYLLKDIDLLERTQHLVTRWTHCLRQVSYEQRLEILKIPDLRARQNRADAIQIFRLTHGLFPGVTRNFLQIQYHDRLRGHSYKLKKEPFKTTVRKNYLTNRAFDIWNGLPDNVVAAVTVSSFKNQYDTLQ
>CR1-5_AG_gag#LINE/CR1 228-1364 [Anopheles genus]
MEDVCYACSEALGPVEGSITCLYCEGTYHLACTKVPISVIDEVKRMASLHWSCIGCTNAIGNPRSKAIKGMGMQVGFQAALTAAVDAMKASLVPPVIQEIRDGFAGIATAHSASLQHSNQLLPDALPNGKRRRLFRDAVASSDAVFVDSAAISNVTNTNNTHRIDRPSLPPIITGTNTTSASIPTVSQTPRTDYLWLHLSRLAASVTIEQVVSLVCLQLDTADAIAFSLLKAGTVPSPLSAVSFKVRIPAALRSKALNAASWPVGLGVREFISLPPRSLHSRTQHTNTYTPIPQQPRTQQTPAPLQPRTQHSPAPQQPCTQHNNPHNNPYSPAHIHEPARTQTEQSPTDMNCTLPSPTLPSTSRSKTLQTTLVQFFPK
>CR1-5_AG_pol#LINE/CR1 1492-4398 [Anopheles genus]
MQQAPTDRAACITVYYQNVRGLRSKADEFRLSVLETEYDVLVLTETWLDPCIPTALLLGDEYRVYRCDRDATNSSHSRGGGVLIACNVSLLSYVLPTLPQLLELTCVCIQLCDHRLFIAAAYLPPNHSMNEEKISALIDFVANICTTLGPRDRFMLIGDFNQSTLSWTSASEENGAAFDFYEPHARSARSVQFVDGLHQSGLYQLNFNTNSSGRILDLIYANWPAASTCSSIRVCEYPLTTIDEHHPPLDFDLDNVAPVTIATAIDADKRLNYARVDLPKLERLILSFDNSFNCSDYSTIDDATEAFCEFMRSAICECTPVKIPRRGPPWADRTLNALKKEKRKAYSDQRAERNSTSRLYYNRVHSLYRRYNRSCHRSYLKQTARSLCKYPRRFWSYMDKKRKSAGLPSIIRYDGDSACSLPEMCKLFALRFKDNFASQTTGPEDVADALSNTPVGALLPMLPVITVDTITSAIKRVKSSYTPGPDGIPAVILKWCASALAPSLMKIFKESLRCGTFPATWKSSWMTPIYKKGCKNDAVNYRGITSLSVCAKVFEMLIYEPLLASACNYISVNQHGFVPRRSTTTNLLEFVSKCHKSIDNGLQLDAIYTDIKAAFDSVSHSILLAKLDLLGLPNPMIMWLRSYLTDRQYSVKLGPYMSSPVHASSGVPQGSNLGPLLFLLFINDATLILPADNHLLYADDAKIFRVIREPEDHARLQTSLHEFQCWCNRNALSLCTHKCEVITFSRSRCPSLYEYALDGQSLARKQCVKDLGVLLDTKLSFKDQLDHVVATSNRMLGLVINMTRELNDIPCTKALYCSLIRSLMEYANIVWWPTAARPLARLESIQRKISRFALRSWNQRLDYRTRCLLLGLPTLSERIRKARLSFITGLLDGRIDSPSLLAAINLYVPARPLRTRAMLALDDRRTQFGSSDPFLLMCRAFNAVSDAFEPRISPTEFNDRVSVLNLVP
>CR1-5_CQ_gag#LINE/CR1 307-1245 [Culex quinquefasciatus] 
MASACDYCAKQVKDEEPFVKCMGFCEGVVHMRCTKTGSLKMNTSFLKIINECFNMFWMCDECSKLMKVARFRTVMESVGDAVDHMQDEQDRKNSELRDLITENGKQLLLLSKRVSSLTPTANKLGTPRNKPTPKRTRDSNPVPPKPLVFGTNEVASASVTCIPPEESLFRLYVTRFANHTTATQVEGLVKNAIGQNELVQVTALVKKGVDPLTLPFISFKVAVNLGHKAAILNPAIWPGNCGFREFEDLQRKSSSPSNGDGQRAKKPMLSLATIPITLTPSGSASPNPDNRDVEPFLTPRSGNSDGAPAPMDH
>CR1-5_CQ_pol#LINE/CR1 1188-4682 CR1-5B_CQ_pol 92% identical [Culex quinquefasciatus]
TVFDTPLGELRRGAGPNGSLAPVFGCRLTSGCTTQSTEEAPTLSGTVAQSAASVHLSHPDPAAGSRVGVFQSSQSGKYAHRLSPSPPDAYPVSSATPSSCLSRHNPDGDLRAAAPPQPTACWTSGCTTQSTEEAPTLSGTVAQSAASVHLSHPDPAAGSRVGVFQSSQSGKYAHRLSPSPPDAYPVSSATPLRRPGRGQKSRLPCNESLNIYYQNVGGMNTRALEYCLACSAVSYDVIAVTETWLKASTLSTQVFGNGYEVFRGDREQFVNSQKRDGGGVAIAVRHGLRARIVVSDEWKCAEQVWVAIDLDDHTVFICAAYIPPDQTSSANVFEINAASVLAVSAMARPYDELIVLGDFNLPGLIWRPSGDGFLYADSALSTQAAHVTEFLDSYSSSLLQQINSFPNENNVVLDLCFVSCPDTAPPLVIAPAPLVKDVRHHPPLLLSLPVRLATEHTPVVCEVRYDYRNLDVPSMLELLQSIDWENTLDKDNLDEAVQTFTNILSYAIDRHVPKKPVTNARVPWQTSELRRVKAAKRSALKKFSKHRTLPLHNYYVRLNSCYKRMSRQCHADHEVRTQKKLKSNPKGFWKYINEQRKEIGLPSSMFLGDETASNTEEICQLFAEKFSSVFTLEDLQPEQVTAAASNVPTNGLGLNSIRIDRSKILEAVAKLKISNTTGPDGVPSIVLKKCIDGLLEPLYLLFNLSLSIGSFPKLWKHAFMFPVHKKGDKRNVDNYRGISALCAVSKLFELAVMAPVFFFCKNLISEDQHGFMPSRSTTTNLLTFTTFVTDSFTARSQTDAVYTDLSAAFDKLNHAIAIAKLERMGIGGTLLSWFQSYLADRKINVKIGDCLSAALMAFSGIAQGSHLGPLVFLLYYNDCNHSLSGPRLSYADDMKIYCQVNNAADAQALQQDLNIFADWCETNRMVVNPTKCSVITFSKKRNPIKFDYQICGTLIPRENCVKDLGVLLDTELTYKQHISYMISKASRQLGFIFRAAKGFTDVYCLKALYCALVRSTLEYCSAVWSPYYENSAVRIESVQRRFIRFALRRLPWRDPFHLPSYESRCKLINLDTLAVRRNVSRALVISDALTSRLQCPAILRGLDIMAPLRTLRNTPFLRVPVRRTNYAMHSALTGLHRAFNFVASLFDFNLSRDVIKNKFLLFFRR
>CR1-5_NV_pol#LINE/CR1 78-3572 [Nematostella vectensis]
MAMALQLPITILAIVLNVLDSSVSEVCSSEAPFAIPGVQGNLEFKASSFKVNQPRSSAFAFINSLSRQRHGRMLGPVLNDSTSPRISLILIIMANDCSTMNPGPVKDPCGICQKPTRSNQRAIQCDECDMWYHTKCIAMTAQSYDRLGSDSQLAWLCNKCLFPNFSTTFLLNEMDLCHENRFESLSSDSTISSDPGSPLFTSSPSRFHDPQGNRVKITRRKLKILSLNCNGLKSPAKKSQFQSLVALHDPDVILGCESKINAIIPTYSIFPENYEVYRRDRTASGGGVFIAVRNDLTAVEERGLDVDGAEMITASIHLAKRKKLFLTSFYHPPTDQEGLGLLDDYLCKLFTKYQQCPNAIIGGDFNCSGIEWSSGEAVLTPPVHSWDLALIALAEKYGLSQHVKSPTRYDSFLDLAFSSKPGLVNACHVTSGLSDHSAVLFEVDLAPKYIPKPPRKIYLYHKADMAALKEHIASFHRDYAASHMERSVEENWNAISTCISDAMERFIPSKTSKTKRHLPWIGAPIKKLMRKRDRAFKKSKRTGKEKDHVNYKRLRNIVSNSIKESHNNYVSEIMKGIDLESDEPRPNGVKRAWSYLKLLRSESLGIPTLFWEGRVCANDKCKAEALRAQYDSVFTQEDNLNVPTLGASPHQDIKDISFSVNGVRVQLDNIRVDKACGPDAVPARVLKEAATELAPILTLLFEQSMKDGVLPTVWKDANISAIYKKGLRSDPQNYRPVSLTSLVSKLMEHIVSKHIMCHLSANNIITQLQHGFLKGLSCSTQLISVIHDWSSVLNDHGQVDVVFLDFAKAFDSVPHERLLIKAEFYGIRGRLLLWLRHFLTNRRQRVVVNGASSTWSPVLSGVPQGTVLGPILFLLFINDLPSGIKSHVKLFADDSVLYRPIKSLDDHHALQQDLHHLERWAEQWQMKFAPKKCYVMTITLKRDKSQFPYHLCGTTLEGVSVQKYLGVHISTSLNWSKHTEEVKKKANAVLGILQRNLSSCPAAVKEQAYKALVRPLVEYGTEAWSPHTKKDIQKVESVQRRAARFVCNDYGRHSSVTNMLTHLGWHQLELRRTVFDSVMFYKIHHGLVKIDFPSDVIRKPGSYATRSSVRNTCQLTLPPPSINQFKYSFFSRTIPVWNSLPQQMLDLSSVDEFKIAVTGELARQ
>CR1-6B_CQ_pol#LINE/CR1 2-1831 Fragment [Culex quinquefasciatus]
NGNIDDYFHASSGECYDFIALTETWLKDHTLSSQIFGPEYEVFRCNRGPDNSRKTEGGGVLIAARRCFKPRRILKDAWKGVEQVWVSVKLADRVLYLCVVYFPPDRTFDKDLYRIHLDSVASVAERARPADDIIVVGDFNLPKLTWTPSHDGFLYPDPDRSQFHSCASDLLEGYNMATLQQVNHVENEDGRRLDLCFVSAQDFAPTLTTAPIPLAKVVRRHPALIITVAGTHSCTVRDRQDTVRYNFRGADYEGMSLALGRINWESVLDSVDVDAAVDTFSSIMRDHIDQFVPKVRKRVTYHLPWQTPELRNLKTQKRAAFKVSSRCGTLSLRDYYLSINSRYQRLSRSCMASYQRRKQRELKSNPKKFWKFVDENRKESGLPSSLHLADEEAESTEDICKLFAKKFASVFSSEPVTEDEARSAADNVPRCDRSLASIEIDEDAISAAVTKLKHSSSPGPDGIPSTLLKRCSSVLQVPLLHLFRLSLASGKFPCAWKQAFMFPVHKKGDRRNIENYRGISALCAASKLFELVVIDPIFAHCRQELSSDQHGFIPKRSTATNLLCFTEFVIDSFENRSQTDAVYTDLSAAFDKINHNIAIAKLEKLGFRGS
>CR1-6_AG_gag#LINE/CR1 225-1361 [Anopheles genus]
MAAICFACAVSLDAADCIVGCAYCEATFHRGCCRLPSELIDAVLTHIDLHWSCTGCTNILKNPRCRSVKEIGAQVGFQAALTSTVAAVGKLIEPIIAEVRSGFTLLQNAPIPQLCNTDPRPVAGRKRRRIIEDSMSPDVNKNVNIRQNNMFAASSPSAYTNTTVGIPPSSTLPEELMGTDSLSSPLRAAFPQPATDRIWIRLSRLSTAVTVEQVVASVKRRLATDDVLAYCLLRKGVSVDSVNWLSFKVRVPAALRDAALAPSSWPVGIGVREFVQSRQREHGHSSSPITIKHRSLTRTPVVIDRRSMPRTPTSTVYHAPAHASTSQAQTLTSPQLGEHTLNDTTHGPNSTLIDGPLLIRRTSNTNLQQTTLDRFFHE
>CR1-6_AG_pol#LINE/CR1 1300-4293 [Anopheles genus]
FAALPTPTYNRPHLTVSFTNRRTSVKSAQTPTCYVPAANALRTARSTASVYYQNVRGLRTKVDEFRLSVLESNFDVIVLTETWLDPSLPSALLFDDSFRVYRCDRSVDNSTCSRGGGVLIACSQSLTSREHTTVHPSLELVCVVIQLGNSRLFIIAAYLPPRLAANAATLREIENCIRSLCSTMHPGDGLLLLGDFNQPLVSWSAAQHDPDLPFLHYEPRTRSALSALFMDEMHHSGLFQINGHLNTSGRVLDLVFANNAVASVCLPLELCLTPLLAIDTYHPALELAIPLPREESAVPALTSRLDYARTDFNRLLPMIASFANVFDCSHYATLDLAVKDFERFMLQALNECTPVKRPKRGPPWGDRTLRRLKTAKAAAYRDYLLRRCPAALRNYNTAHSLYRRYNRFRYLGHVRRTVLRCRGNSRVLWNFANNRRKSSGFPSSVSYNGRNGNNPSAVCDIFASRFAATFLPAVTDERQIADALSNVPVDAMAPNLPIIDEYSVSKAIDRLKSSFAPGPDGIPASTLKRCGTTIAPILASIFRDSLRSGIYPACWKTSWLVPVHKKGDKSNACNYRGITSLCACAKVFELLVYEPLLAAASNYISTAQHGFVPQRSTTTNLVEFVSLCHRTIDAGSQIDAVYTDIKAAFDSVPHALLLAKLETLGLPVQLLAWMRSYLTGRTYCVKMGPHTSRRIDASSGVPQGSNLGPLLFVIFLNDVTRLLPPDGHLLYADDAKLFLPIRDRSDQLRLQATLSAFQSWCSLNGLELCVEKCVVVTFARKRCPLVYDYALNGSTIGRKSCVTDLGVLLDEKLSFHDQLEHVVTKGNQLIGLLKQIARDITDPICIKTLYCALVRPVLEYASVVWWPTAARPLARLESIQRKFTRFALRSWSVQLDYEGRCALLGIETLKQRNCNAQRLFVAGLLDNRIDSPALLSRLNMYVPPRSLRARSLLDVEERRTRFGSSDPFIRMCREFNVICDRHQPDMSRTALLNSIRV
>CR1-6_CQ_pol#LINE/CR1 198-3644 [Culex quinquefasciatus]
MEDPDSPVTVAPPLCCDVSSSGHQSRPGPVYGSRERVFQTPNAGKYNPAFHERDVFDPDARLHSSDDRTTPVHRDLPSCSYRNPSPSRWPSDTADPGRTNPRIMEDPDSPVTVAPPLCCDVSSSGHQSRPGPVYGFRERVFQNALPGMYSRFSVQSTLPDASQPSSSQQSSDAPLTHPRSLARVSSRIQQCHLYYQNAGGMNGNLDDYLHASSGECFDFIALTETWLKENTLSSQVFGPAYEVFRCNRGPNNSRKVEGGGVLVAARRCFKPRRIDQDAWKAVEQVWVSLKLSDRVLFLCVVYFPPDRIYDKDLYKIHLDSIASIAERTRPIDDIVVVGDFNLPKLTWTPSRNGFLYPDPDRSQFHPCARDLLAGYNLATLQQINHIENEDGRRLDLCFVSAQDFAPTLIVAPAPLAKIVHRHPALVVTIDGCHSSAVRDRPDTVCYNFRGADYDEMSLALRNIDWDSVLDSVDVDAAVDTFSSILRDHIDHFVPKVRKRNSTHLPWQTPELCNLKTQKRAAFKIFSRCGTLSLREYYLRMNSKYQRLSRSCMASYQRKKQRELKANPKKFWKFVDENRKESGLPSSMRLANEEAESTAEICRLFAKKFSSVFTNEHITDDEIQIAANSVPRCDRSLPMIDIDDDAVSAAITKLKHSSSPGPDGIPSTLLKRCSSALVSPLLHLFRLSLASGKFPCAWKQAFMFPVHKKGDRRNIENYRGISALCAASKLFELVVIGPIFAHCRQELSSDQHGFFPKRSTATNLLCFIEFVIDSFDNRSQTDAVYTDLSAAFDKINHSIAIAKLEKLGFCGSLLTWFRSYLSGRSLRVKIEDTLSESFDATSGIGQGSHLGPLVFLFYFNDANFTLRGPHLSYADDLKLFAKIDCLEDAEALQRELDKFADWCEANHMVLNPGKCQVITFSRKHSPILFNYHLGDTLVERVDHVKDLGVILDVKLTFKQHVSFITAKASRQLGLVIRMTRHFTDIHCLKTLFCSLVRSSLEYCSSVWTPHYNNAVYQLERIQRRFVRYALRLLPWRNPQQLPPYEDRCQLMHLDTLQLRRDLARALTVSDVLTDRIDCPSLREKITLTAPARQLRHTPIMQIPFRRTNYSANGAIVGLKRAFNKVSSVFDVSLSRDVLKSKFLSVLRRMF
>CR1-6_NV_pol#LINE/CR1 214-3660 [Nematostella vectensis]
MKFALLVLSISLLLRGFYHQHFTSTTLKLKPTSIQLPSSASIACFFTSKQHTGSVFRPFPAPLTSSSCWLSILLVISSNGSILNPGPVKFPCECCSKPTKSNQLAICCDDCDTWYHIKCLRMPMHIYQGLNNSHTTWICCNCGLPNFSSSLFSRSLDISSSNSFSLLESTSTASPGLDPTPSPIASSSPVLTPSPKHKLRCMSINCNSILSAERSALFASLVSHHNPDIIFGCESKLNRDVPSASAFPQGFTIYRKERQDCGGGGTFIAVRSPIVSHPLDNISTDPEDESLWVSIQISRRKFVHLCSFYKPPLAPASRIDLLSQALLRVFDKQKKSHPNVVIAGDFNCGDINWKVSPPVITNPATASLMNKLLDFIDDHALTQYVSDPTRPASLKTLDFVCSSVPSLVSDVSVHPGMSDHDLVHFYINTNPRRATRTPHKVYLFDRMNLEGLQHDMDLLNQSFMVSPLSRSVEENWSIFKTGIKSAIDANVPHKMTKRKPDVPWLNRALKRQIRKRERLLRRAKHSGDKSPSSPAWLAYRKYRNKVTKALKEAHNHHLNEVVGGSLVSNPKKFWNYVKSRRSEVSDIPSLRSNDGVSISPRDKAQVLNKQFQSVFTVDDGVLPGLGPSPFPHISDIIFTPTGIKKQLDNMQTCKASGPDELPARILHDLSNYLANMLCIIFQQSYDKGTLPLDWSTAKVVPVHKKDNRDNPGNYRPISLTCLSCKVMEHIVLSHLNKHLSAFNILSDLQHGFRSGFSCETQLILATHDWASTLNSHGQVDAIMLDFSKAFDKVSHAKLSHKLHHCGIRGKTLGWIEAFLNNRNQFVVVDGSHSSQVPVTSGVPQGTVLGPTLFLVFINDIVDQCSSVTRLFADDTVVYRTIRSPADHVSLQHDLCNLEAWARTWQMEFNASKCQLLPITLKRNSSLFNYSLGSQLLNSTDEHDYLGIRVAHDLRWSRHCCKVSLKANKTLGLLRRTLKPCSQSVKERAYFSMIRPVMEYASPVWNPFTDRDINKLEQVQKNAARFVTGTYDPRASSSDLVKSLNWDSLEVRRQLAQLCLFYKIRNNLVNIALPQQFQPNLRPSRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPSEVVESSSIDSFKSSALPVLRSLRIPGHLRRL
>CR1-6_NVi_gag#LINE/CR1 91-570 Fragment, via tfasty with CR1-3_NVi_gag, 2 frameshifts. [Nasonia vitripennis]
MDVNPYNNVSQSLDCGAFSAELHDRTYRSFNVLMYNVLARKQQLLGAITGLNVDEISGRRFPRTSRNSSFPVRFGSSDDASRVLKNRKLLPSSVEATADHTAYQRDLYRKLKLKASLHNTSHPDSLKKVVYVKGTPTLVDLRRTSTAPLSEKPSKNLQAS
>CR1-6_NVi_pol#LINE/CR1 618-3438 via tfasty with CR1-3_NVi_pol, 1 frameshift. [Nasonia vitripennis]
MYGKLHLFKAKLFQLSILPDIVVITETWLQDCVLSSELGMQQFDVFRCDRDLSSHGVQRGGGVLIGVKKFLQAELVHVDNVIEQLIIRISLPSHKLIVAASYLRPDSSVQVFSSHVSNLEDANIKFPDHRMVLLGDFNLHHITWSSDTSAYSPMAYLSPALRSAADIISGYSTSMDLVQHFKHHPKKGYSLDLLFAQKDFISPMDFNEDILPCDDHHVPGMFSCNISVASSASCNLKFCKRKFYSADFEAIRARLSEEDWATVLYSFSDDPDSGIARFYEILNGVIDQHVPITKQSLSSYPKWYDSELINAICKKKIAHSTWKSSNSKRDEIEFKRLRAVCVRLSRSKYRAYISSVELGLKRNMRTFWSFIKNLRNDSSIPSKMYHGPTRAASDVEVSNLFSGYFSSVYRTDSLREFESNDEPLVSLSNIVLSIETLRSIVANLDDNINGGPDGIPPYFIKRCWSLLERPIVHIFESMLRSGYFPTFWKYSFVVPIYKNGDRHSVANYRPISTLSCIPKILDAYLASELSNSLLSKVAQQQHGFISGRSTLTNLLVFNDFLSESLCNHEQTDAVYTDMSKAFDSVNHSRLISKLFNFGIRGKLLDLLRSYLTNRSQAVRVNGAVSSPVDVPSGVLQGSHLGPLLFCLYVNDLVPKLSAAQVLLYADDIKLFMRVRSADDSVKLQRDLDTLVAWSVENGLSLNANKCSVISFSRSKSLLLFNYCINGSRLQRVDVVKDLGVIFDSSLTFITETDVVVSRSLRMLGFIKRSTVDFSDPSAIIYLYKTLVLPHFLYCPQIWRPHSQYLINKLESVRHSFLRYIAFKMGKPLHRFCHDYSEIAEGCDIPTVDSTFYLHDCVMTFKILRGLTNCERLSDLFVSRTVAYPLRNLRDLREGTFSSNLGFYSSINRMKRQWNSIPNNVQSKESVGQFKSSIRSLSLAY
>CR1-7_AG_pol#LINE/CR1 203-3122 Fragment via tfasty with Q_pol, 1 frameshift and 1 stopcodon.  [Anopheles gambiae]
PTLTQTHDGHVIPAGVASLNNTDDLLFLYQNVRGLKTKCHEVFDYVSTTHYDVIILTETWLDINSSQLFPDHYIVFRKDRNDKNSRKTKGGGVLIAVASHLRVLLCSTSDTVEQLWLKIYSIKKTYVIGAMYVPPDMANNTSVIHTICSTIDDVACKANEMCLLFGDFNLSNLNWIPDETNPLMLQVDYESSRITDNCRLLLDCMNSNGLYQINKIHNASNNYLDLIFVCDDILQQCSPPAITPFPIVAIDCYHPPIELCLPNGLAKAEHHTTSHQESGMLDYSRTNFLILNDLLQSSDWSFLDGNPDVNHALDMFNRKFTEHLSACCPIKRPRQGPPWGNAQLRRLKRNKSSCYRFYQNSGTQQSRLRFIAAHNVYRSYNRQLHSRFLIRIQFSLRRKPKKFWRYVDTKRKNSSLPAIVSFNGTTSCTKEETCNLFADRFMSSFATEAPGFSLDAALNNVPSDAVDVNVRDINISRDSVLKALKQVKPSYNPGPDGIPTAVLAKCSEVLAGPLARIFTLSLNQRMFPAAWKSSYMFPVHKKGDKSLVENYRGITTLPAGAKVFEVVVQNSLLNCCRSLISTRQHGFFPRRSVTTNLVEFVSHCHAAFASGAQMDVIYTDLKAAFDRVNHRLLLAKLARLGFSTPLVEWFESYLTNRRYRVKVECMTSREFVSCSGVPQGSNLGPLLFSLFFNDVTTVVRESECLLYADDLRLFFPVRCFGDCLVLQASIDSFSDWCLNNDLQISVDKCLSMSFHRSNCPIVFNYCISGTQLQRHSAVKDLGVTLDRKLDFHVHHNEIIDRANRMLGFIRRQSREFSDPHCLVALYKSLVRSILEYSSVVWCPSSSLWSNKIESVQKKFTRLVLRFTPWRNVAARPSYHARCLIFGLESLATRRETAQILFMKKIILGEIDSPDLLARVNFHVPARILRNFRLLRVDQTRRAYSDNEPLTAMAIRFNAHYDSFDWNSLSxPVF
>CR1-7_BF_pol#LINE/CR1 635-3991  [Branchiostoma floridae]
MHVQTCPWSCTRLVNEVLRSNSQMNTRLFRNLPFHSFCLLTLYYIAVFISVFISVNMSNSKLLNSTKYPCGTCDRTVSWSDLGVECETCGRWYHLSCQGIQSSSYDRLGQSEVVWNCDICVPTCTRNSTPSPTNSTLNSESDFRSSHSSTPTNSTLNSESDFRPFHSSTPTRVNQQNKRSNRPLRFLNINFQSIVGKRAETMNLIDSTKPDVILGTESHLDDTIFSSEILPPGFNIFRRDRNRNGGGVFIAVADNLPCHEVTELSVPECEIIWVKIRVKGRKHILAASYYRPHTRDSLDQFETSVQRAVTTTSNATLILGGDFNFPAFDWNTKQLKVTSNYPGLHYQFLDFIQDMGLDQMVTLPTRGDNTLDLFLTNYPSLVPRIECLPGISDHDVVFMEFDINPVYKRQNRRKVPQYSRADWPALHAAAADLSDSIVKDFGKDKNTEHIWCAFKEGLSSMSQQHIPQKTLGGKNNKPWVDHTTSRLIRRRDRLYKRWKKTGNTKVREQMKALKHTIQRRLRRAYWSYTESLFTNQDDPHAVPGANMKRFWTYIKSQRTEAASVAPLKVEGKLVTEAVDRAEALNKQFQSAFSQKVTFTVSEFQNRTNLFQQPNAPTCSSINISEPGVRKLMQNLDPKKAPGPDGISPRLLKELAVELAPALTLLFQSSLESGVVPRDWRTANVTPVYKKGERYRPENYRPISLTSIPCKIMEHIVTSTIMSYVEENEIICKEQHGFRRRHSCESQLLGLVDDLSVDLEQGRQTDALIMDFSKAFDKVCHSLLIHKLNYYGITGSLQTWIQSFLTDRRQAVVVEGSISSFVPVDSGVPQGSVLGPTLFLLYINDLPTSLSSIARLFADDTLAHKTISSTRDQEVLQEDLDRLAEWEQTWMMSFHPDKCQALHITRKRVPQTMNYKLHGHTLVSTKEAKYLGVTITYNLTWCTHIANITNKASRTLGFLRRNIKVGSKKIKNLAYVTLVRPLLEFASPVWDPYTAKDIAKLEAVQRRAARWVSNRYRRSSSVSEMLHDLEWPTLQERRRRARLVTFYKYHSGDLAINCKTSPAPQARSSRSTHPAAYKVPTSRTQYRQNAFFPRTXRDWNGLPAEVALSPSLSMFKSKI
>CR1-7_CQ_pol#LINE/CR1 36-3185  [Culex quinquefasciatus]
LAVGVRSGQTSGASYRAVPDDRRAAAVGSRADPDADGACTTDRFTCQPTNXGRCRNGDYRVETAATSNSPQIAASTQPTHSVLLPRRQRRPNRKLVPSSLLVYYQNAGGIRTKTNQFNLALASSDYHVIAVSETWLRDGILDSELSSNYQFFRKDRSPATSELRRGGGCLVAVKNGLDATLVKLAGYDHLEQTIIRVKVRRQNVFLCCIYIRPNSPNDIYLSHYAAVREVLSKAGVNDLVIVVGDYNLPGLRWTFDDDVNAFIPNNASTEIELDLMESLLTSGMQQVCNLSNARGNILDLAFVNDADRVDLIEPPSAILKPDRHHKQFVLKVDLHHNPDQVSQHSADVADFDFNRCDHVAVTDALNQIDWDNVLNSEDANTQASQFYSVVFDVIQQLVPRKRIARDRSIKQPWWNAELRHKRNILRKARKRLFRSKSPEDNVCVERLETEYELLNETLYREYLDNIQTRLTDDPSSFWSYVKSRKRTDGIPSVVDSGDRSSNSPEEAANLFADFFKGVFNHGLHTAPADYLDEIPSHNIDMPFPVLSEAEVLEALAAVDSSKGPGPDKLPPSFIKMCAGSLAHPVSLVFNRSLTNGQFPDVWKVAAITPIHKSGRRKDVQNYRPISILSCLPKVLEQLIHKRMYAAAVPIISEFQHGFVKKRSTVSNLMLYVSSINSSLEKRCQVDSVYVDFAKAFDKVPHNLAIEKLRRMGFPRWLTVWLSSYLTGRTGFVRIGSSRSLQFAVTSGVPQGSHLGPLIFLLFVNDICTHLKSQKLLYADDLKVFRVVSSAIDCVALQQDICAINEWCVRNGMKVNEEKCNVISFSKKQDTIHYRYEMNSHLLTRVDCIKDLGVMMDHKLTFDKHVAVTSAKAFATLGFLRRNTVDFENIRALKTLYISLVRSILEYAVQVWAPHYAVLCDRLEKVQKSFTLYALRRLPWRNPAYLTSYDDRRRLLQLESLEHRRIFLQRLFVFDVLTNRVDCPEIRQKMSLHEPQRALRTYLPFRIARHTTVYGQNHPIDRCCRYFNPVWCFFNFDMTKELFKTKIRNVL
>CR1-7_NV_pol#LINE/CR1 371-3475 [Nematostella vectensis]
MSCESYQRYVNDSKLTWICNTCMFPNFSSGYFFNDIHVADNNSYALLADSSSEDISITTNYSELPCCISSSTPVWSTSRSTRNSSKLSCMEINCNSIKSSERAAIFASHVSAHKPDIIFGCESKLSPEDTTSASFPSDYNVFRKERSGSDGGGLFIAVKRDIPSYELPTIATNPEDESLWAVIRCSNKKTVYICAFYKPPEAPSSRLDHLQESIFKVFSQNNKSHPNIVISGDFNCGDIDWQSDPPSPTNHVTAAMMQKLLDLISNNAFTQFVTKPTRPASLKTLDLVLSSSPALVSDITIHPGMSDHDIVKFSINTRAKRIKSPPHKVYLYKKMDIEALQQEMARAAEEFSRHCTERSLEENWSFFEDRLKSAVETHIPHKFTKSKKSLPWITKSVKRQMRKRDRLLSKALKTNNKNSKAWCAYRCQRNFVVKLLKSSYNYYLNTVIGGSLESNPKKFWSHVKHSRTESCSIPTLRQGDSMYISDKDKAEALNKYFESVFTQDNGASPDLRPTTCTSIQDIIFTQAGVHKQLAGLNVSKSSGPDGISPRVLRDLAKELSGMLCFIFNQSYNEGTLPAIWLNAMVVPIHKKSAKDLPENYRPISLTCISCKIMEHIVLSHLNKHISSNNILSIFQHGFRAGLSCETQLVLTFHDWATVLNHHGQVDALLLDYSKAFDKVSHPKLLKKLSYYGIRGKTLAWISGFLNKRSQYVAVNGTHSDKVQVTSGVPQGSVLGPTLFLLYINDICKASNSQIRLFADDTIIYRPITSMDDHTALQDDLDNVLDWSAAWQMEFNVTKCYLLSVTKKRRPSCYQYTASTESFAQVSDQDYLGVRCNEQLRWGPHCAKIATKANRTLGAIRRTLKPCAPAVKERAYLSLVRPMLEYASTSWSPYTDTDVLRLEQVQKNAARFVCNNYDYQARSSELVNQLNWDTLEIRRLYHQIVLLYKFYNNLVACPLPSCVVPTNRSTRRHSLSFQQLHSNILSFNYSFFPRAIRAWNLLPDNIVNLSNLESFKTAALPAIRQLKVPPHLRRL
>CR1-8_AG_pol#LINE/CR1 1-1736 via tfasty with Q_pol, 2 frameshifts.  [Anopheles gambiae]
YISSIERHPRKFWRFMDSRRRSKHNHGHVTxDICNIFAERFSDAFSxVDQTVISRATSYTPLNMIDYTIPTFDIRTVEKCLKSLKPSTAPGPDGIPSYIISKCYQSLAPVLTNIYNTSLSSGIFPRLWKTSWMVPIFKKGDRSCASNYRGITSLCAVSKAFELLLYGPMLSATSNYIMDNQHGFVPKRSTLTNLTEFVSFCKRNLDSGGQVDAIYTDLKAAFDLISHDILIAKLQKLGFSEQIVKWLHSYLTERSYKIKVNDHTSREVLGTSGVPQGSNLGPLLFILYINDVGQLLAEHRFLLFADDVKLFAPINDTNDCINLQHAINLFSIWCRDNAMVLCIEKCRVLSFYRSRSCTRFNYQIDNISVERTDTFRDLGIILDTRLTFNDHLENIVSRGNQLLGWIIRSTQGFRNPMTIKTIYCAYVRSVLEYGSIVSDPCTEQWSNRIEAIQRKATRYAVRLLPWRQGDVLPSYHSRCLLLGIQSLKKRREIAKCLFISGLLNHHIDAPTLLATIEFNAPSRNLRTRQFISVPRYRTRFGQSDPMSAMCRTFINNFDLFDFNIPQNVFRDRLRTQLT
>CR1-8_CQ_gag#LINE/CR1 308-2278 Translation after collapse of tandem repeat at 1138-1642 [Culex quinquefasciatus]
MTKSSNCDADVCLGKAANRSPRVRCEFCSASLHIKCANLDNTVVKPLRDSAGVCWLCSKCRDPVKRKATSNSNTMDLILQRTTSTMKLVGALLDTVQILSQLTRTLCSRPNCSTIRPPVPDLDTVAGGNDPLNFTEIFESAMNGEKRPRSSSLSRQSLSQPEKITRVGVSVNQTAASNITVPPVSDSNDHLAVDTEQFCSDPLFDAASKVALEVAALAAEFSAGYSTAPTEQTNPPASPKILASQVATAQQAAAAQQLATAQQAASAQQPASAQHVAQQAAAQQALQTAATANAQQTATINLAVASASASTDSTQKWYYVTRFQPHEKSANIIRYIQSKTNCDPDQIVCNKLVSNNKSNGRPLSFLSFKITVPDSIETIVNTHTFWPXGVTIQPFTENRTRAIASTKSKS
>CR1-8_CQ_pol#LINE/CR1 2047-5163 [Culex quinquefasciatus] 
RPSSYTIDRSLSRSRCPTKCSTEHTKYQSTTLPRPDSFSIGLPLAASSVATIPDTIPDDTAVPVVPKPTERVKVPPALETNLLLFYQNIGGLNTTIAQHSLAISDASYDMYAFTETWLTADTLSSQLFGPEYEVFRSDRTSVNSDKMSGGGVLLAIRSALKPRQLFPPNCSIPEQVWVNVPLATSTLFICVVYIPPKRDNDRPLIEQHRDSLAWVTSMMKINDSVMIIGDFNFPALRWTRSPTNKLIPNLAXTPTNQLKLDVLDDYSVANLKQLNDIPNISNNVLDLCFVSSDTPTCCSLLPAPQPLVKIDRFHSPLLVSISCKTHAFRASSCSFFHDFNNADFAGMCVYLNNINWNDLLHNLDANGAAETLMNILRQAIDTFVPRKERQPARYPPWTNERLRILKTAKRAALRKYSKHPTDRWRNFFWAASNRYSHLNNRLYHQHLHSIQNRLKRDPKKFWNHVNEQRKESGLPTVMVRDDTEATNPEDICDLFRSQFSSVFNDEIVDDAIISKAANNVPVRPPIGQHPFVNPDAVRRACLRLKGSTSCGPDGVPALVLKKCGDSLAAPLSLLFNLSLRTGVFPSCWKKSFVFPVHKKGPKRDVRNYRGIAALCATSKLFEQIVLDFIKFQCSSYIAQEQHGFMAKRSTSSNLVAYTSFILRTMQHRKQIDALYTDLSAAFDKLNHRIAVAKLERLGFGGSLLDWLRSYLAGRTMCVKIGDVVSAAFAVFSGVPQGSHLGPFIFLLYMNDVHLLLKCHKLSYADDIKLYAVIETRSDALFLQDQLNIFANWCMDNRMLLNASKCAVITFTRKRSAIAFDYKLTNTLLSRTSCVKDLGVMLDSKLTFSDHLAYTTAKASKTLGFIFRIAKKFRQISCLKALYCSLVRSTLEYCSVVWSPFYQNSIQRIESVQRKFVRYAQRHVLWADPLNPPCYVERCKMLQLDLLSTRRDVAKVTFVTDLLQSSIDCPSVLELIDFNIRRRTLRTHYFLRVPRALTNYGHHEPLSSMCRIFNSCSDFFDFSLPRNTIKNRVLNHLRNL
>CR1-8_NV_pol#LINE/CR1 14-3457 [Nematostella vectensis]
MAATGLWAPLLFLLFGTLSMSKLNSSTQNSNLNTWGINQTNCMPMKLLDIAPLLRNEVGYGELNRAKKLRITYRFGRTGPSHLVMLLLILGGDVELNPGDKCGICSKSIKMNQAGIQCDQCDFWFHADTCCNISPAMFSILANSSCTWICPQCGLPNLSDSFFDSTMDSLISSNYFEPLSQDGSAISQITNQVKVQTRSKMKPVKRRNLTCLVVNCRSVKNKIADIAVVINEHQPDIVFGNESWLKPDISSAEVFPENYKILRKDRDNNRGGGVFQAVKNDLIITHRPDWDSDCEIIWSQCQLAGTRSAKSIYFGSYYRPNKSDIESLDELNSSLLKMGTTLHKNNVILAGDFNAPDIDWVNPENPDKLTSASKRLLDITDDHDLNQFVKEPTRRNGNTQNILDLVLSNNKDIIRGVKVIDGISDHDIVLFTVKLACQRKRNVKRKVYIKKKADSDRIKQELHNLLPTILELNSNTNSVDKMWDEFERNIHRIMDTCIPHKTTSSRYNLPWFNRALRRQVRAKQRLYNKAKKSGNPTHWNEFRIARKRLQKNLKSARETYISDFLGDAIEENPKRFWSYIKQLKNDDPGVADFKVDDRIISDGQLKSELLSKQFCSVFTVEDLTDIPSVGTDPKQNISALTITIPGVVKQLQSLKPNKASGPDEIPPWFLKEYALEIGPILTSIYQTSIDTGLVPSRWKHANVCGVYKNGEKSDPANYRPISLTCIASKVLEHIIHSHVMKHLQHYGILTDVQHGFRAKRSTVTQLILTIHDMAKAIQENKSIHAAVLDFSKAFDKVPHERLIKKLQYYGIHGPLLYWFMSFLRNRTQTVVCDGKRSCPSLVTSGVPQGTVLGPLLFLLYVNDLPDNLKSSIRLFADDALLYGVIVNEEDGDQLQEDLKRLEMWQSKWQMVFNPSKCKTICISNKKIPPQRSYVFCGVHLEQVQSITYLGVILNDDLKWSKHVKSTSGKASKVMGMIKRNFWNCPQRVKVTAYTAIVRPMLEYASAAWDPHLQKDIASLEKVQRKAARFCLRNYIPTASVTEMLGDLQWSTLELRRTMARLTLLYKLSRGQIDIDTSMYLRPHQDLRTRNSHNFKYYQEKATKNKYFYSFFPRTIRHWNTLPNELVELGSIEHFKRDLEIYLNNNKN
>CR1-9_AG_gag#LINE/CR1 141-1304 Artifically cut from ORF 141-4136 to separate gag & pol.  [Anopheles gambiae]
MEGVCCDCSVPLESLECGIMCSFCDAVYHSACTKSPFTVIEEVKRTASLHWSCVGCSNALGNPHSKAVKTTGMQVGFQAALTAAVEVMKAALVPPVMHEIREGFASFAAAHQAPSEHFNVPPPDALPSGKRRRLFRDVVASTEAIVVDNAPLYPVNTDTDNTHQRNRPSLPPIITGTDTTTTSIPTVSQLPRTNYMWLHLSRLAKTVTVDQVVSMVKSQLDTTDVIAFSLLKAGTTISSVSSLTFKVRIIAALRDKALTAGSWPVGLGVREFISLPQRPSHHRPDLTNTNTPIPVRHSPMHPVQLSPDMNCTLISPAPQKQLQPHQTPLKCTKLLFNTFFLSNNHTTVSSKGTVPLNLTSHLFTRNNNTSTTRSLTDDLAPTYTRIPL
>CR1-9_AG_pol#LINE/CR1 1305-4208 Identical to gi|55236949|gb|EAL39465.1| ENSANGP00000017291 [Anopheles gambiae str. PEST]
NVRSTSITVYYQNVRGLRSKADEFRLTVLEADYDVVVLTETWLDPSLPTALLFGDAHCVYRCDRNAANSSLSRGGGVLIAVSSALRSHALPVLAQTLEFACICIQLPTYRLYIAAAYLPPNHSTDEGKINALLDTVNSICDTLGPNDRFVLVGDFNQPALSWSPAQSNHETPFVFFEPHTSSVRSAQFVDGLHQNALYQLNNNTNSMGRILDLAYGNWSSAATSSLIRVSEHPLLPIDCYHPPLEFDLEITASSMNHATTVTEIKLNYARADLTKLKRLICSFNQSFECSNYTSIDHATNDFSEFMRAALRECAPIKKPHRGPPWGDRTLHALKKAKRAAYDYLRANRSTPCRLYYNGAHALYRCYNRVCYRRYIRQTERSLRKYPRRFWSFADNMRKSTGLPGTIRYKDNCAHSPLDICELFATRFEDSFISNITPPEAVASALVNTPADAIHVTLPIVTETLVTQKIERLKSSYSEGPDGIPATILKRCAVSVAPVLTKIFNESLRTGTFPSLWKVSWLTPIHKKGSKNEAVNYRGITSLAACAKVFELIIYEPLMASAGKYISTNQHGFMPKRSTTTNLMQFVSGCYKSIDDGMQVDAIYTDIKAAFDSVSHNILLAKLDRLGLSPPLVKWMKSYLCGRSYAVRMGSHQSRSIGASSGVPQGSNLGPLLFLLYISDLCTALPDNSCLLYADDAKIYREIREPEDHLQLQATLTEFVSWCKRNALSVCIDKCAIISFSRSRAPALFNYTLDGQNLERVNCVKDLGVLLDAKLSFEEQIDQVVASGNRLLGLVINMTRELRDPMCFKTLYCALIRPLLEYASIVWWPASTRALARLESIQRKATRFALRDWPRRLDYRTRCLLLGIPPLAERVEHTRLAFITGILNGTIDCPELLSSFHLYVPARILRRRPMLAVAETRTTFGSRNPLLCMCRLLNSANDIYE
>CR1-10_AG_pol#LINE/CR1 1-3195 Perhaps extending ca 60 AA into gag ORF  [Anopheles gambiae]
SPRIPRIFGLQCSPGFSSTTAAAIPSQAINRCDPRTRITSVYPYRFSAANFPPVDEPAATTAQSNSTSTPITPLHHAAERFETLPSVASPITVSAPLPLHASFPHPIDDLRFYYQNTRGLRTKLDDLRLASADTEYHVLILTETWLSENIPSSLAFDNNFVIYRCDRNSRNSSRSRGGGTLIAVSRKLAACEISPASDSLEQCWIRLKLPSCSLFIGSIYLPPTLSADASTLNTLDASIDEIISRMKKNDRLLLFGDFNIPSITWHASPDPAPPFLPLLVPASSAHSSSLFIDIVRYHSLSQLSSVSNFRQVQLDLIFTFPKNQSNATSTCTYVSQAPVPILQIDPHHPPLELSLKITGSLTPSNRSQHSSSRLTTAPSLDFRKTDFNLLNTSLSNIDWSQLYSCKDVNLAVSTFTSLFLSTLPQCCPKRNPPRSPPWSDATLKSLKRDKSRYQRAYWSTRSVNALRTYKYAAAAYRLYNRTRYNGYILILQTRLRWYPRAFWKFMNARRKGSSLPSTMHLESVYASSPEDICSLFRNHFSNIFSPPSQIPNTASQCLSYTPQDVIDVSCFGFDEHSVSEALSKLKPSFSAGPDGIPPSLLKKTAEVIAPLLSFIFNLSLRLCCFPSSWKSGWLCPIFKKGNSADVSNYRGIVLLPACSKVFEIAVHSVISFQVKSWISVNQHGFMPSRSTVTNLMQFASHVIPSLDSGLQVDTIYTDFKAAFDTVPHHLLLLKLKKLGFSNMLIDWLYSFLNSRSIRVKTDTTFSSSFCPSSGVPQGSVLSPLLFVLFVSDVHAILPSEGHLLYADDLKIYLTISTHSDCLRLQEFLNSFSLWCSYNQLSLCPEKCSVISFCHNRNPIHYEYSLSNSVLSRTSLIRDLGVLWDDKLSLNEHLESVVASASRTLGLICRLTRDFRDPLCLKSLYCSLVRSTLEYASVVVGPVRSGWILRFEKVQKRFTRFAFRRMAGPNAAMPSYESRCNLLGLESLEVRRSQARVLFIGRMLNGLIDAPTLLEKIGLYAPSRNLRARSALNMVSRQTTFGSNEPLLLCVRTFNTSTDPPHPRL
>CR1-10_CQ_pol#LINE/CR1 3-2105 Fragment. [Culex quinquefasciatus]
RRADFESLSRALRGIEWSSVLDPVDIDLAVDTYTXILGRLIEQFVPKIRKVVSHHLPWQTQELRXLKTQKRAAFKVSNGSVHLRDYYLRINHSYQRLSRRCFANYQRKMQKKLKTDPKKFWKFVNESRRESGLPTSMRLADXEGDDADKICQLFAKKFAGVFCAEPITDEEVRAAAENVPRRDELLASIEIDEGTIQAAAAKLKHSCSPGPDGIPSTLLKRCSSSLSAPLLHLFRLSLSSGKFPVAWKQAYMFPVHKKGDRTNVENYRGISALCATSKLLELVVIDPVFSHCRQDLADEQHGFFPKRSTATNLLCFTESIINSFDAHSQTDAIYTDLSAAFDKINHRIAVAKLERLGFRGSLLAWFKSYLTGRSLRVRIGDALSDIIDATSGIAQGSHLGPVVFLFYFNDVNYTVTGPRLVYADDLKLFARIDNSNDAEALQRDLDRFAGWCXVNRMILNPGKCQXITFSRRHFPVTFDYRINDTSVERVTHVKDLGVILDTQLTFKQHLSYIIAKASRQLGLVIRMTRKFTDIYCLKTLYCSLVRSTLEYCSTVWSPHYNNAVCRLESIQRRFVRYALRQLPWTNPLXLPPYEQRCRLIDLDTLQLRRDLARAMTSADVLLGRIDCPDLRNQIQLRVPTRQLRHTPALEVPFRRTNYSANGAINGLKRAFNKVSSVFSLDVSRTTLRFKFVSLLRSLLRM
>CR1-11_BF_pol#LINE/CR1 398-3898  [Branchiostoma floridae]
MTCFVTFSTILGSILLTAHCLVLIVNSHHDPSPFTPRHEGIPHTLKPSFNSPFPLTPLLDNTCANHPLKLTLVSIFINSNGKLAPHCRPKFTLFSLTLIILLAGDVELNPGPRAPKYPCGVCHRAVRWEKVDGRHAICCDSCDVWYHTDCMGMSTPVYNTINNPNVSWICCSCGLPNFSSSLFNTTVFETSNCFSSFNTSTCSSPARSIGSPIATSSPIGYGITPPPRDRTHTKPVRTCVINFQSIRNKVPELHAFCEAVQPDIVVGTETWLDSSVGSSEIFPDTYNVFRRDRAGRGGGVLVAVKNNIIATHHPDPDCPCELTWVRVHLANSKSIYIGAYYRPPSAGHDDFVALERSVLQKRANNNNAHIWLAGDFNLPDATWNPEANTTASNPSTLTSNYISLANDCGLEQMVCEPTRTVGQTSNTLDLFLTTNSTLVERVKILPGLSDHDIPLIDVQVKPQTSNSKDRLIYLWRKANIDALQQDMATYSREFADQAQHNTASENWELFKAAVSGAANKHVPRKKVRPQSNKPWITPQIRKAMRKRSELFSKARRSNSNEAWAKFKRCRKGVKQRVRKAHRDYVSNYLESNIEDNPKAFWSYVKSIRQDSTGASALRHQGVLTSDPKEKADALGAQFESVFTREDKTTVPTLGEPKAPTIPSLNITVEGVAKQLSCLNPSKATGPDGLPPRLLKTVAEQIAPILQVIFSQSISTGDVPEDWRTANIAPIFKKGDRTLPSNYRPVSLTSVCGKVLEHIVHSHMMKHLDAHGILSPAQHGFRKGLSCESQLVLTLQDLAKNMDQNKQVDAAVLDFSKAFDTVPHERLLSKLEHYGISGLLQSWLRAFLTERTQRVVFDGGTSKAVKVTSGVPQGTVLGPLLFLLYINDLPDSVDSHVRLFADDCLIYRTISKPSDAQGLQSDLDALTEWQNRWLMSFNPSKCHILHITRKKHPIITQYSLCGEALTGVKSHPYLGVQLSDDLRWDTHINHATSKAGKVLGVIRRNLTHCPSRVKATCYKALVRPHLEYSAIVWDPYTNKGIQAVEAVQRRAARVTLNDYRQTSSVTQMLSDLQWRPLSERRRNARLTFFYKVVNNNINIDASNILKPAQGRTRGSHDFKYQHIFARTDIYKHSFFPRTIPEWNALPGTVVSAPNVEHFRARQAACPP
>CR1-11_CQ_pol#LINE/CR1 3-2402 Fragment [Culex quinquefasciatus]
HSHDGFLYPDPRLQAKSVNITDLLDVYSTATLEQINSFPNENNNTLDLCFVSRQDVAPPIYVAPAPLVKTVPHHQPLILSLDVLRYPARTVTFEPIRYDYRKADINGIAEILTSIDWTNTLDPDDVNVAVQTFSNILSYAIDRHVPKKAILPPDRIPWQTNELKKLKSKKRAALKKFSRRRTLPLRDHYLRLNQRYKTLNNHCYNRYRYRIQQKLKSNPKAFWKHFNDQRKESGLPSSMFLDNETASNPDTICQLFAEKFSRMFINETLSPHEVAAATENVPPCGNVLDRLVLDDQRIMNAAAKLKSTSSVGPDGIPSSILKKCIQCLLSPLRLLFQHSLDKGVFPDLWKTAFMFPVYKKGNKRDIDNYRGISALCAVSKLFELAVLDLVFFHCKQQICAEQHGFMPGRSTTSNLLTFTTYLTKGLASRSQTDVIYTDLSAAFDRLNHDIAIAKLKKLGFSGSLLGWFQSYLSRRTISVKIGECVSLLFLAYSGVAQGSHLGPLIFLLYFNDSNFVLDGPRLAYADDLKIFRYVNSTDDAELLQQQLDQFADWCATNRMTLNPQKCSVISFTRKLRPITHNYTLLGTTVPRVECINDLGVLLDAKLTYKNHVAYIVAKASRLLGFIFRATKKFTDVYCLKSLYCGLVRSTLEYSSVVWNPWYQNSSERIESVQRRFIRFALRLLPWSDPHRLPSYESRCQLIHLDSLAVRRNAARVTAVADLLTSRIDCPSLLGELNLQARSRVLRGGAFFRIPLEAANYSAHGSIIGLQRTFNRVASIFDFNVSRDVLKKQFLEFFRCN
>CR1-12_BF_pol#LINE/CR1 1-3354  [Branchiostoma floridae]
MAPNSDFKFTPGILNLLSFHKHQKDRPNSPRNPLKSISVSIALLVMLTQSGDVHPNPGPYKPKFPCLLCGKAAKWNQRAVACDECHGWYHVDCMSMSTANYNVLAEWICCQCGMPNFSSSLFNNSDFELSNSFESLSSIHSQTNSSCNSCPDGNHINPSNPGIAKSPLAASSPLKAKAKPSRRKPPKQKLKTCVINFQGIRNKTADLAACLDQHSPDIILGSETHLNDSVGSSELFPPDYTVIRKDRELGRKGGGVLLAYKNDLIVTHRLDLDTECETVWATLEIQGAKPITIGSCYRSHTYAKDIDFVDKLRASLNKIKPQGGQVWLGGDLNFPGIDWNNLSVSPSAPYSALSKHFLELTHDFGLEQVVDQPTRLNNTLDLFLTNNSSLVETCSLIPGIGDHDGIPVITVNVKPKKIKQSPRRVSLWKKADETAIRTELQDYSNNLAKRNIDNCTTEELYNEFVDKIKIVMDKYVPSKTINNNNFSPWINNKVRKIHKKKQRAYNSYRKNPTTENLTKFRTIRKRAKKTTRQNYRKYVNSICSDSPKKFWSHIKHLKQDTTGIPSLKQKGKLETDNRNKANILNNQFSSVFTREDEHMPHLPRSSIPTMPDFSINVNGVTKLLKDLNPHKASGPDGLPTRILKLAAAELAPALTIICQKSLETGQIPSPWLHANISPIFKKGDRTDPANYRPVSLTCVCSKVMEHIVQSQMMDHFDKYSILSDKQHGFRKKRSCETQLILTTTDLAHSLDTRSQTDMIITDFAKAFDKVPHDRLLLKLQNYGIRGKVLHWISNFLKNRKQRVVVGGEHSEWAEVVSGVPQGTVLGPLLFLVYINDLADNLNSNIRLFADDCVIYREINSDRDHTLLQEDINTLDTWQNTWQMKLHPDKCFVMRYTHKRKPKLYDYKLGSHVLAETNNHKYLGVTLNNQLSWSQHIQYSASKANKTLGFVRRNLYNCPKSVKTNAYTSLVRPHLEYSSAAWDPYHKEHIAKLESVQKRAARFVTNSYHSYDSVTKLVSDLGWDTLRNRRTANRLTILQKARHHKVALPVETHLKPVPRQSRHSNPNSYKALPFHKDCYKHSFFPQTVRDWNSLPYEVTEITDAPKFKEAVLRRLRGH
>CR1-12_CQ#LINE/CR1 16-3803 via tfasty with CR1-5_CQ_pol, 1 frameshift. [Culex quinquefasciatus]
MIKHTKEIPSLSAAASSRSAPVVSHPYPAHGDRAGGFRPGFSGKYSCCPSNSPLDKSXVSSESSSRQPLQNSILXIPSARSKSVRNFSDYGGALAPPTTLQLSGPAIVSNLIVSAEVSRRISVAPNSIETASPGRFLLSTVGALNSPAAADTIAEPAISKTQLAGHLSRPGDVCGYGARVPKSSASGKYSRCGTFSLVDDHPHSSSDRRHSPARAAALLHSGRLIQSPVEAPERPVAVLPHVNAQQSRPEPAYGHREGVFQRQLSGEYPVLEHMSRADDLLVSSTSLRTTSAAEAPNRLDTQRALSFYYQNVRGLRTKIDDLFLAVIDCDYDVIVLTETWLDDEIFSPQLFGTGFVVYRNDRDTVRTGKKTGGGICIAVSKKFDSTEFPVPTDASSLEQLWVVINGVADQKLYVGSVYISPDLARNSAVIESHFNSASAVAEAMRPNDLHLLLGDYNQPKITWAKFNSRHAHPSSSSASYPLSSSTLLDGMALLGMKQLNDVSNNLNRTLDLVLIDDDSVNYCSVAEAPEALLRIDPPHPPLEVTVSLRVPVPFIDEPDTRSYNFYKADFPALNRALLGVNWNALNETQNVDEAVAFFNSTLKTAFRDHVPTRAPPRKPPWSNDRMKKLKRRRAAALRKYSARRNPVTHRAFRLASKRYTHYKRHRYGIHVRRTQENLKRNPKLFWSFVNEKRKETGLPAKMFLGEANSTSTEETCNLFAQHFLSVFRPSPATPDQVRSALRAVPADALHLSAVPITEEDVRMAIAKLKSSSSAGPDGIPSIVLKSCAVAVTKPLQRIFNLSIQSETFPNCWKSSYMFPIFKKGDKRDVSNYRGITSLCAGSKLMEIIVNTLLINATKGYISTAQHGFFSGRSTSTNLVDFISFCKRNMEGGGQVDVVYTDLKAAFDRIDHRILLAKLDHLGVSCKVVNWVASYLTGRTLSVKIGASESVPFCMTSGVPQGSNIGPSFFSVYYNDVTFVLPPGSRILYADDLKIYQPIHNVDDCRVLQQLIESFTQWCDSNLLSVSFSKCSIISFTRKKHPICWPYTIGDQPLERATVVKDLGILLDEMLSLSAHYNAVISKANRNLGFVFRIANEFRDPACLRALYYALVRSHLETAVVAWSPHTDEWVTRIESVQRKFTRFALRFHSWPDQVVAPSYEQRCEALGMETLSKRRQFLRAAFVGKLLLGAIDAPNILARINFNVIPRPLRTWNALRLDFHRTQYGQQEPIRAMCDVFNDFDDLFDYSMSVDSFISNLRRTIFV
>CR1-13_BF_gag#LINE/CR1 431-1870  [Branchiostoma floridae]
MMSEVDISVPDPLADKLADTNLWIKCYMKSGFRAREEDVALSLVESTQHHGADGVRPSDILGVQVIPPMIIINLSNPKVKAAALKQAHIQLHGKDLTLLDFVTTPLTKPRLTRISIHGVYHSVPDVVVADWVDKFSIRATPIERHLVKNATDMFKHLRTGHRFCYVEKFTERPPPRFTTISVPHPLNPSECTDIDLEVFCGQGQIVNCRRCKALDHKAYECPNITCFSCGMTGHTKANCASITETERHPTRYQRRSADRDDSVGFSPQTQDSVDMINRAFNKYVRPAVPTSNRFQSLARLEDESDIAIAGAIRDIRVQHTDQRPSAVADADRRHLSNHRNKRRSRASRLMSAEEPHPNSDVTAPSYRPSNDRYNLRNRKRSLPSPEQRTHPATKKQNAERFQVSQGVPKPARDLHTKTVSHITTPPLTTDVPPLDLRTTCEESLSAMPATSPPVSTVSCDTVRDCATNTHSNSRPLVGE
>CR1-13_BF_pol#LINE/CR1 1871-4777  [Branchiostoma floridae]
QRAKTLPTDISCLNVLYLNARSVKSVSKKYNKLVRFQNLVATVQPDIISVTETWLTPCVADQELLPQDYTVHRKDRSVTKPGVTGGGVMLAVKSNILSQRREDLEPMDEVLICDIHPTNHQKIVLIVYYRPPSGDLSVFNANLSSILSCVSKEYSQVVLMGDLNCPNIDWSKGGSHSEHESRLCDLLNDYALTQINNVISNSHGHLLDVVLTNIPDKCLEIEQVTSEYPTDHAILQFGLIINRKIKRHEDKRYVYNYKRGNFNRLRLDLETKLHNINDDVNLDNIWERWIFEVTESVELCVPKMCVKRSSSLPWFDGEVRHARNKKKTAWRLAKRTNSPSHWSKFRKLRNDLQRLIKTKYNSFLNNLGSLVQTNPKRFWSFFRSKTKSKCLPAVLNSASAVASSAIEKADMFNDYFHSVFTLSNDTLCLPEIAVFEHPCLGNIVFSIEEVQNVLSRLDCSKAIGPDGLSPTVFRECAHVIAPHLTALFNRSLNQGWVPAQWKDANICPVFKKGRKDLVENYRPISLLSIVGKIMERCLFNRIFPHLKHLIYPLQHGFIKGRSSSTQLLEIYHEIGGILDRGGQVDIIYLDFSKAFDCVSHQLLVHKLKMYGIHSNLLSWFHSYLSCRRQRVMVEGTCSDWLPVVSGVPQGSILGPLLFLLYINDLPSVVSNKMGLYADDSKCYKHVSTVLDCVSLQRDIDCMYDWSNTWQMNFNPDKCKILRISRSRNPITFTYKMNDTVLESVPEFTDLGVLATWNLTFDSHVHNITSRANSALGFLKRSVGFNAPVNVKKMLYLTLVRSRLEYCSVVWSPYTHNLISSVEKVQRRASKYILNDYTADYKTRLIHCSLLPLSYRREILDLCFLYKCLLGLYDINIDNFLNLPHPLLRAHSQAKLIPGKCHTTNFQYSYFNRIVYIWNSLPPEIRKLRLNPTFSTNRFKQSVIDHYFSLLATHFDVHLISTWTHCSKC
>CR1-13_CQ_gag#LINE/CR1 1-669  [Culex quinquefasciatus]
KCRVLEIAEAAGAAAPSFVFPTVPVFRFGSTXNRQSGSSRSASGQPQAHNAFQTSQSTLAGFHLPAAXSXTAFSLAANTRVXPINNNPQSVPQQKAARPRNRKQLQPHLXPFLQPPLVQHNLAPPLQQTAPAFTCKHFYVKPFDPATTAEQIANYIQSRTGXXYDNFNCQRLTSESRSDSRPLTFVSFKVTVPDVVAFTNVITNSAFWPDFVSVDSFTSRRRS
>CR1-13_CQ_pol#LINE/CR1 673-3621  [Culex quinquefasciatus]
QSKPCSALASVTSNTRRDILSVYYQNLGGLNSSLAEYKLACSDASYDLYAFTETWLQSHTLSSQLFDDTYEVYRKDRSSSTSSKSSGGGVLLAVRKELKPREMKVPDTSEVELVWVILPLTEKSVHICVVYLPPDRVNDSELVERYTQSLLWVVSKLKANDSICVLGDFNLSCLKWISDKDGSLFVDVSRSTVSTVTARFLDDHHLANLAQISEITNENNALLDLCFVSNDVTEYYRVSRAPAPLVKDVRHHPPLHLSIFDSAPCKFADSKTAVYYNFKKADYIGMNTFLNNMNWEELLASRNVHSAAEVFSHVLLYAIDQFVPKKCRKPPVTPEWSTPALKRLKSSKRSALKCFSKCHSSFYRLQVNNINNRYKHLNKKLFLAHQIRVQKHLKKNPKGFWNYVKKQRCESGLPNSMVRDGVDATNTREICDAFRAQFSSVFTHKNLSEQEISNAAARVPESLPIPSNVVISHEDFRTASAKLKCSHSAGPDGIPSVVLKSCSNSICLPLTKIYNMSLSSGVFPDRWKESFVFPIFKKGCKRDICNYRGIAALCAMSKLFEVIVLNFFLHNFSSGIAYDQHGFLPKRSTNTNLVTYVSTIQRAIQSGYQVDAVYTDLSAAFDKIDHRIAIAKLRRIGLHGTFIDWVYSYLTGRSMQVKIADCLSSPFLVTSGVPQGSHLGPFIFLLYINDVNYQLRCSKLSYADDFKLFTIIKKPSDCRFLQQQIKVFSDWCQLNQMVLNPTKCSVITFSRKRSPVCFDYTLFENSLKRDRCVKDLGVMLDAELSFKDHVAYMTSKASKLLGMIFRMTKYFRDIQCLKTLYCSLVRSTLEYGSIVWAPFYANEINRIEAVQRKFTRFALRYSPNQSLDYASRCDFLHLDFLSVRRDLAKTVFVSDLLRSNIDCPYLVGQLNINIRRRTLRSFAFLTLPFARTNYAFNEPFSSMCRVFNRCYSSFDFNLSRPVQKLQFLTFLREENPRPLNPLV
>CR1-14B_CQ_gag#LINE/CR1 25-1515  [Culex quinquefasciatus]
MRVDVPVDQTLDSNNSVPTVSDAEAALGAAALAVERAAAARTTNSSIVQAAQLDGTTPPIAPRNAVATSAAAAQSATAHPDAVHPAASHAAPAAHSTTALLPPTDPGVQQAVLPHSQVSQQLLITPQAPPQPQTMPSSQPLVVPPQSMLPSQPLVSAQPPPQTMPLLQPLVLPSPQRQAPPPPLITQPLQTAPQALTHAASTSSSSSTATNRIVPDARFSVESYQQSKAPEVNFIPFKTSFIVSEGNRINVHGPSLTQCQQLLDSNISEPNCQIHEQNCTPHTTQATNYCETTNTISNLQHPSLLVAPPEQSTSDDSAELKWFYVSRFLPSETCDNLIRYIQNKTXCDSARIICQKLVRKNRNSARPLTFLSFKLSVPESIESLIVATDFWPEGVTIKPFLVKRQAPELIGPSSHNPQPLNNLVSPRSSRTTTPRRRPAPKMIPNQPQHTARLYPYNLPLPFYHPSQLAVPHMNQYLPLYGQMPEAVHHRQQWSTMV
>CR1-14B_CQ_pol#LINE/CR1 1500-4478  [Culex quinquefasciatus]
MVNNGLRSAISPAPPPTDPRTTNQAALHREEATNLLLYYQNVGGMNTTIANYYLAISSASYDFYAFTETWLSTTTLSSQIFGTEYEVFRCDRSAANSCKDSGGGVLLAVRSSLKPRQLIPPNCTCPEQVWVSVPLASSTLFVCVVYIPPKFDNDATLFEQHRRSLTWILSKTKVNDSIMIVGDFNFPGIRWTRTPTNKLLPNLALTPSNKLKHDLLDEYSTANLSQLNDLCNSSNNVLDLCFASSXVPVNCALLPAPSPLVKDVRHHLPFLVSISCTVFTFSDTNGSTFIDYRNGNYEGMNEFLATVNWTRLMANLDANEAAVTWTEILTQAINVFIPKKQRQPPQHPPWSTHRLKKLKTVKRAALKKYAKHPTDRWKNHYRAKNRKYSLLNNQLFRRHLNRIQSRLKREPKKFWNHVNEQRKETGLPTSMVLDGDEATTTESICDLFRRQFCSVFNNETVADSQVARAASNVPLRPPIGPHPVISSESVRRACARLKSSNSCGPDGIPAVVLKKCCDALAEPLAQLFNTSLSTGVFPCFWKKSFVFPVHKKGPKRDVRNYRGIAALCAVSKLFEVIVLDFIKFNCCDYIAQEQHGFMAKRSTSSNLVTYSSFILRTMQKRKQIDAIYTDLSAAFDKLNHRIAVAKLERLGFSGSLLEWLRSYLTGREMSVKVGDVISAIFAVFSGVPQGSHLGPLIFLLYMNDVHPLLKCHKLSYADDIKLFTVIEETGDCQFLQEQLNRFANWCSDNRMVLNATKCSAITFTRKRNKISFDYTLSNTTIPRTSCVKDLGVMLDSKMTFTDHITYMVSKASKTLGFVFRIAKHFRDLGCLKALYCSLVRSTLEYCSTVWAPFYQNAIQRVESVQRKFVKYAQRHITWPDPLNPPSYAERCKMLNLDPLSVRRDVAKAVFVADLLQSSIDCPAVLQLININTRRRVLRNHSFLTVRRALTNYGHNEPVSSMCRIFNLCSDHFDFDLSRDKIKIRFLNFLKSLP
>CR1-14_BF_gag#LINE/CR1 1-1098  [Branchiostoma floridae]
MATYASVTTLTTRSAESTMPMVKPAYMKYSEAIGREDRWLSTREICGAAEKIAGYETMEGAQLVGGLWRLYPKTKAARTALLAEGLTLRGKKIPLYDHNPYIVGGQGENNNPTTRVTIEGIPLSADDRDIVKTLERFGCKLRSAVMYEKDRDEDKKLTRWKNGNRFVFIDIPAEPLPVKMTFGNFRGAVKHREQYHKKPEDMTCGKCLLKGHYSKICPNDIVCRDCGMSGHKRGDPGCHYITAVQQISSPSPEDVIEESFRLYVEPAATTSPDTSDNKDTSGNNTEVSQSTSGVPADESVSAPKSPLPKRDSKTRGRKRSKAHARQQRDSERDDALTRLMKEARMRAVPASMPRKTSGSPTLHSS
>CR1-14_BF_pol#LINE/CR1 1491-4451  [Branchiostoma floridae]
MLPHVCFLLFFILMMSSNFLNAIYLNARSVKSVNQSRNKLVQLTNLLHLNAPDLLAITETWLTSDVHDLEVIPPEFVTYRKDRHVTHNNKSGGGILLAVKSSICSSRRLDLEPQDEILVCEIRPPAMGKIAVILCYRPPSGNLSSFTHNLGSTLESVNKEYNMCCVLGDFNLPRIDWANCVVLNEGREADFCNMINNYFLKQINHVPSNSTHNLLDLVFTDFPERFSTIRELPADFDTDHTVLEFSLRCRIQTRQELPRKVYNFTRADWLGLSAHLESLRLSESVTHHHDIDSAWEAWSSAVQSAVDMFVPSRKLKVSTSPPWIDGEVRNLQNKKRTAWKRAKRSDSPSHWEKFRKLRNKLKNLLSAKYNKYLVSLSSTLQESPKRFWAFVRAKSKSRSLPTDVHLNGTVVQSAPDKANLFNDYFFSTFSAPDPNVIKPDIDVIVDERLCNLLLAVESVENVLVNLNTSKAVGPDNISAHVLKGCAKTLAPSLTLLFNRSLSAGCVPSRWKDANVLPVHKKGDKENVANYRPVSLLSLVSKLMERCMYNQLIPILRGSLHEFQHGFIAGRSTTTQLVETYHQVGSILDKGGQVDMLFLDFAKAFDSVSHTLLIHKLQMFGFGGNLLAWFTSYLTDRRQRVVVEGCQSKWLPVTSGVPQGSILGPFLFLLFINDLPCAATQSTVALFADDSKCFREVSKLNDCVKLQNDITAMYNWSLSWKMSFHPSKCKLIRLTRSKSPIVYSYHMSGTTITSVDSMPDLGVIVQSDLQWNRHILKMVARANSMTGFIKRTIGFNSSTDVRKALYTTLVRSILEYCSPLWSPQSRKLMSLVEGVQRRATKFILGAHSNTLTYKERLSTLGLLPLTHRREVCDVMVFIKSKPIVHKYVSFPSRPSRYLRSHMLTPIRVRTSAFSSSYIPRLVTIWNQLSPVLRNIGVQATEKSNILTFKRSLVRATFVRFDTQFNIDVPCSWSTSCGCASCTALRLH
>CR1-14_CQ_gag#LINE/CR1 404-2420 via tfasty with CR1-14B_CQ_gag, 1 frameshift. [Culex quinquefasciatus]
MPKTGKIEVVACCDAGSRGTKIRCEFCAKSWHTKCANITANAIKTLRDTGGACWLCPTCRTPDGRQPASSDTSKLILQRVTSALLLIGNLTDTMRVFCRMYSASLSASTPSTTVLPPTAALEPDLSDAFHANLSDLFDSILGDGNKRPRTSSLSRASEVQPEKILRVDVPVDQTSTSNITVPPVSGAADASPSATLETAVTTTPSAVNLLAVADPATSPLAAAVAAVTGVANADASADTLLGSSELAASLPISPHQSSTTATAAAVAAMPPTIQPEEPPLTMLSVQPLVTPQPPPPQIMPSLQPQQVANIPQVLQPLQIMPQAPPQPLTMPSSQPLVMLSPTMLSAQPLVTPQPPLPPPRKLAPPPPLIMQPLQTAPPASTAASTNEFAVRSSEAVDSNKQSTTPTVNFIPCPTSFTVTDGNNINVYGPSPALLEQLTVSTNKNCQTRQTNCMPHTTQNNAMLNQAANNPSPPGNINQSHPTLLVAPLEQPVSELKWYYVSRFLPTETPENLIRYIRHQTNCDALIVCQKLVRKNRNANRPLTFLSFKLNVPESIENRITAADFWPEGVTIKPFLVNRQPPQQTGPPLTNLNQQNNHMPIRSSPRTVTPRRLPSQTMTPRQLSTQQTVYPYPPNLSWPAFHPNQLTVPSVYQYMPQYSRMPEYSNIQQSTMV
>CR1-15_BF_pol#LINE/CR1 145-3358 via tfasty with CR1-8_NV_pol, 1 frameshift.  [Branchiostoma floridae]
ILLILLSGDVQPNPGPRAPKYPCGMYNPTLAHVPRSTPVACRKAVRWEKVDGRRAVCCDTCDTWYHTDCMGMTTPVYDAINHPSVSWICCSCGLPNFSSSLFSSIVFETPNCFSFPTPNSSSCTSPGSSVGSPVATSTPTTQVPNPPPRDRTQSKPLRAAVINFQSIRNKTSEFHVFCDTVQPDIIIGTESWLDPSVGNSEIFPPSYTAFRKDREGRGGGVFIATRSDIIATHHPELDSTNELIWIQINMSHCKTMYVGAYYRPPDAGLDDYLALEQSLTNIRQKPGNPQIWLAGDFNLPAATWGLDSTSNSTSAASSLTGKYINLANDCGLEQVVSEPTRRIGQAANVLDLFFTSNPTLVEKCKIVPGLGDHDIPLIDVHAKPQKTKKKDRLVYLWRKGNMDELQKDMEEYSNNFLRQAPKRTTTENWEDFKTTLLSAANKHIPQKRARNQHSQPWITPQIRRAMRKRDKLYTKARKTNTEEAWSKFKACRKGVKQRVRKAHSVYKADFLEENIQENPKAFWNYIKSLKQDSTNITSIRHQGILTSDPKEKAEALGDQFSSVFTKEDLDTRPTLGNPVTPPISQLHISVEGVAKQLSDLNPNKATGPDGLHPRLLKSVSTQIAPVLQSIFTQSLATGDVPEDWRSANISPIFKKGDKSLPSNYRPVSLTSVCSKVLEHIIHSHMMKHLDKYNILSPAQHGFRKGLSCESQLLVTTHDLTSALDQGKQVDAIVLDFSKAFDMVPHNRLLSKLQHYGISGNLLSWLQAFLTQRTQAVVLDGESSKPTKVLSGVPQGTVLGPLLFLLYINDLPDIVGSNVRLFADDCLLYRIIEHPSDVQGLQADLDALTHWQNQWQMSFNPSKCHTLHITHKRKPIISQYVLCSENLTSVKTHPYLGVQLSHDMKWDTHIKYATGKANRILAVIRRNLQHCPPRVKSTCYKALVRPHLEYSAAVWDPYTISGAQALERVQRRAARVTVNDYRRTSSVSDMLTSLQWPLLADRRRDARLITFYKIVNGIINISPTQYLKPAQRRTRGSHMFKYQLTTAKRDCFKFSFFPRTVVEWNRLPGHTAQAPSVEAFKAGLAALP
>CR1-15_CQ_pol#LINE/CR1 16-3369 [Culex quinquefasciatus]
MATPTPSDTAAPPFAAADLTCPGPVVGVRDRSCQTCPTGKYPYISNTSSSERLPIFSPSTVPDSTRRLPSAEAVMVSQLMDPAPLDNPSHRAALPSPGRSLDGTMEVPNRSDAVALPASGQPSRPGPAFGSREGVFQQQTPGEYSESTVFSSPDNPLACSPPRHLTIYYQNIRGMRTKTEKLRLALMSSDYDVVVLTETWLHGNILDSEFSANYKIFRLDRNTATSSAARGGGALVAVKSDLGAREVELANCERLEQSTVRINFHSFSLFVCGIYVRPRTTPDVYTLHAESVQQILEKATDQDVVVVVGDYNLPDLVWVFDEDVGGFLPANASSDAEVALTESFLANGLVQINFLLNNSNRLLDLAFVNDAAAFELLQPPNSLLPIDAPHPPFVLKLEICAHTPASESIDPVAEEFDFKRCNFETLNSRLEAVDWSTMDTAGSLDDAVTEFYDQLLNVLRDTVPVRARRFRCPSRTPPWWNSQLRNLRNQLRKARKRFVNRSSWGNKVTLSYLETEFAEQQVTSYQNYIAGVQDNLQSNPKNFWSYVKERKQVGEIPTDVSYREEKSTSPEAAANLFARFFETVHSSQDPTVPPEQLNELATYNINLPLLTVSVAEVKKALGSVDAAKGPGPDRIPPSVVKNCCSSLARPVTSIFNRSLSEGAFPSEWKVASITPIHKSGSRAKVENYRSISILSCLAKVLEKLLVDHIYPSVKNIISEYQHGFMKQRSTTSNLMAYTNWIIRRMEKRQQVDAVYIDFAKAFDRVPHKLTIAKLTALGLPDWVTRWLNSYLVNRSAYVKIAGSLSTCYEIPSGVPQGSHLGPLIFVLFINDLCSRLQSCKLLYADDLKIFRRIGDSDDVRALQEDINVLLRWCVQNGMEVNEKKCKLISFYRIRSPNLAEYNMGRSTLERVHSIVDLGVTIDCKMEFNQHVSISVAKSYAMLGFLRRNAAGFTDVRVLKTLYFSLVRSVLEYAVPVWAPYYAVHQQKIESIQRRFVRFAARVLPWNDPVTLAPYTNLCALVGLPTLQHRRVLLQRLFVFDVLRNNIDCSDLLEEVHIRVPSRELRNHQLLDIPRHTTNYGHHNPLDACCRKFNHSTILENFDFNVCKSVFRSRILLLS
>CR1-15_NV_pol#LINE/CR1 2-844 [Nematostella vectensis]
STVRLFADDTIIYLTVTSEESCKLLQKDLDVLQEWGKTWKMEFNTTKCEVLRIKPKRQFQHTYYLHGVPLKEVKQSKYLGVQISHDLKWNKHIDDITAKSSRTLGFLKRNLKINSPTLKAKAYQGLVRPKLEYCASVWDPRSRVENNGSYKIEMIQRRAARWCLRRYGRTDSVTAMLDALGWRTLEQRRADIRLTTLFKITRGLLSVNTQGLLRPVTRKTRRSHPESFIPLSTSSASEHLSFFSRTIIQWNNLPALLFNEPCSLPIFKDKISRLTHLPVN
>CR1-16B_CQ_pol#LINE/CR1 58-3837 [Culex quinquefasciatus]
MGRFTKSRLEVPRAPXTVEPNHSPSSNYFSGSAARPGPVFGHGNGAFQAATSGKYTHPLRTSPRPDALSLSSKLRXVDEEMLAVAERCVADGPGRMYRGIEVEPRFPVTAVPFTTNTLSCLSSSQHSRPGPVNGTRSGVSRALLSGKYMWFPRTILPPDVPEVFSQRYVPTTEPQPRLADNSAFSVPEQDCTFQCARAEIADLPDHVDFPCFPVTITPFITANHRSDESDTSGRSHQGSEECPRPPYTVESSQRSSPGVSTSHQSRPDPVYGHGSGGFRPPPTGEYNQINDSXPALNHQSLQQSKGTLSFITVYYQNAGGMRTKTKQFFLALASXDYDVIALSETWLQDDIVDAELSSNYNLFRQDRNGLTSDRSRGGGVLIAVKKAHDFTCTRVLSAGYEHLEQVAVRIKARNHTVYVCCIYIRPNSPPDVYTSHGTAVQELVDLSSNDDSIIVTGDYNLPHLAWTFDVDVNGFIPLNASTEQELALTENVVATGLLQICSLANVNGRILDLAFVNDTLSVELIEPPKPILRTDRHHKPFILRVDYPDIPGVATRIEDAEPDFSRCDFDRVTESLSSIDWDDILQDQDANTSTTIFYDVLYEIVRQFVPSKRVSRNRTEKLPWWNADLRNRRNILRKARKRLFKAGTPENQTAVDRLEIEYELLQDSLFRDYLNRVQVDLKDNPSSFWKYVRSRKRTSVLPTRISLNGSTAENPEDAANVFADFFSSVYEADAPSASNDYLNDLPTYDVDFPQPEFSQAEVKSALDAVDPSKGAGPDRLPPSFIKRLSEHLAKPVSVIFNRSLSEGTFPDEWKLAAITPIHKTGSTTAAENYRPISILSCLPKVFEVLIHEGMYSSAQVVISEFQHGFVKKRSTVSNLMAYVSALNENLEKFKQTDAIYFDFAKAFDKVPHTLIIAKLDRLGFPRWLTAWIRSYLSGRFGYVRLGGVQSRNFPIPSGVPQGSHLGPLIFILFINDICQRLQSQKLLYADDLKIFRTVASTIDCVALQQDIDAIQEWCNLNGMKVNPSKCKSISFTRSPAPIRYDYTFDRHEMDRVCSIRDLGLLIDRKLSFSEHVSSTTAKAFALLGFLRRNTAEFENINALKTLYITMIRSILEYAVQVWAPHHANQRDRLEKVQRRFTLYALRRLPWRNGVWRSSYSDRCTLLEMVSLEKRRTFLQRMFVFDVLTGRIDCPQLREEITVHRPTRTLRNQPLLRIPFHRTLYGYNRPIDRCCRIFNSVSDEYEPSMTRERFKRKILAL
>CR1-16_BF_pol#LINE/CR1 452-3436  [Branchiostoma floridae]
MGFLQLALSFVSFMATMSLSPNLNVIYLNARSVKSVNQYRNKLVQLQNLINLEAPDLLAITESWLTPDVHDQEVIPPDFVTYRKDRYDTHNNKAGGGILLAVRSTVCSRRRPDLEPQDEILVCELHPPTVGRIAVVLCYRPPSGDLAPFTRNLCSVLESVHNEYSMCCVLGDFNLPRIDWSSCVVTNDGKEADFCNLINNHFLQQLNQVPSNSCHNLLDLVFTDFPERFSEIRELPAVFDTDHTVLEFTLQCRIQHKRGLPRKVYNFKRADWGGLNAHLESSGLAESVTNHPDIDSAWEAWSSAVQSAVDTFVPSRKLKVSTTPPWIDSEVRNLQNRKRTAWRRAKRTDSPSHWTKFRKLRNRLKNVLSAKYKKYLESLSSTLHESPKSFWAFVRAKSKSKSLPSVVQLEGIIAQSPIDKASMFNDYFFSTFTKPDIDTVNPVIDIVSDDALCNLQFSVDSVHKVLATLDPNKAVGPDAMSPHVLKRCADVIAPSLTLLFNKSLALGKFPSHWKDAHVTPIHKKGDKEVVSNYRPVSLLSTVSKVMERCVHDSIIPRLHASIHNLQHGFMKGRSTTTQLLEVYHQVGSILDKGGQVDMLFLDFAKAFDSVPHALLVHKLQMYGFSGSLLSWIESYLTNRRQRVVVEGSRSDWRTVTSGVPQGSILGPLLFVLYINDLPDSARNSMSALFADDSKCFREIRSTNDCSKLQQDICSLHDWSIMWKLTFNLSKCIVLRFTRSKYPIRYDYHMSSSNLTVVDSMSDLGITVKSNLTWNSHVIRTVAKANQMLGFIKRSIGYKSNTDIRKTLYLSLVRSVLEYCSSVWSPTSRNLTALIEGVQRRATKYILGPSAEHLDYKSRLSRLGLLPLSYQREMSDVVVFVKSLAKVYDSDLARLAAFPTRTPRSSRAHMLVPQRVRSSSFASSFTPRLITIWNKLPVEIRGLGASATSPSDVSAFKRKLSTFMQNRFRQNFKLEQACTWSLACCCASCIATRPR
>CR1-16_CQ_gag#LINE/CR1 376-1413 [Culex quinquefasciatus]
MSATSTSNISKNTILCHACAEDVLDEYIPCQGFCNAVFHPNCSGVKPALLKEIASHRQIFWVCKSCTNLMVDLRHRRSIQCAYEAGQELSLSHHNRIVEQLKLELLTVLKAELSANFAKLVASNSLTPRSSSLNKGGFRGSGSRRLFDNNPAPPLGPNPIPPKPVTGKPGGPADVPERIVAKGFGAPAGDDSPRFWLYLSRVSRNVTEEQITKLAIDRLGVSEIKAKRLVAKGKDVSRMRFISFKVGMNFDLKDKALESSTWPDGLLVREFEERSGEIFWEPTNAVNFQQNPTPPVPPQDPRNTPTPKSTPVSMPLESKEMMTNPKDTEPTSPGSQGCSPMDLWTK
>CR1-16_CQ_pol#LINE/CR1 1485-5537 [Culex quinquefasciatus]
MMSSFSPGRAVESLVRVPRLPDATTSSPRYHLRTPASRSHQSRPGAGVGVGGGVSQPAPFGKYPSRLQHFLPDVRPTSSPCTITTAAQTAIVLQLSARAIQSLPGRTVESLVRAPRLPDATTSTLRHHMRTPASRSHQSRPGAGVGVGGGVSQPAPFGKYPSRLQHFLPDVRPTSSPCTITTAAQTAIVSQLSARAIQSLPGRTVESLVRAPRLPDATTSTLRHHMRTPASRSHQSRPGAGVGAGGGVSQPAPFGKYQLSSFHTRPDARSAFSATVPSALQTSPAAPGHRNATSVAVRSVRLVSPCPASSITANHHTDEPRTSGRTHLGSEECPRPPYTVESLPTSSPGVSSSQQRRPDPVYGQGSGGFRLQPSGEYNEANDSGPALNRRHFQQPNGPLSFITVYYQNAGGIRTKTKQFYLALASSDYDVIALSETWLQDDIVDAELSSNYHIFRQDRSALTSDRRRGGGVLVAVKKSHGVTSTRVLSRGYEHLEQVAVRVKVRNHIVYVCCIYIRPNGPPEVYASHGTAVQELLDLSSHDDSIIVTGDYNLPHLSWTFDDDVNGFIPLNASSEQELALTENVVATGLLQICSLMNANGRILDLAFVNDAHSVELIEPPSSILRTDRHHKPFVLRVDLLDVPDEATGNYEMEPDFRRCDFDLAAEALSIIDWDAILLGRDTNATTTILYDVLYEIVRQFVPVRRIPCNRTEKLPWWNADLRNRRNILRKARKKLFRASTPENRATVEHLEAEYESLQDSSFREYLNRVQVDLKENPSSFWRYVRSRKRSSVLPARISFNNTTAENPADAANIFADFFSNVYETTAPAASADYLNTLPTHDLQYSQPEFSQVDVQTALDVVDPSKGAGPDRLPPAFIKRLSAQLAKPVSIIFNRSLSEGVFPDEWKLAAITPIHKSGSTMAADNYRPISILSCLPKVFEVLIHEGMYSAAQVVISEFQHGFVKKRSTVSNLMAYVSALNENLEKFKQTDAIYFDFAKAFDKVPHTLIIAKLDRLGFPRWLTAWIRSYLSGRFGYVRLGGAQSRKFPIPSGVPQGSHLGPLIFILFVNDICQQLQSQKLLYADDLKIFRTVTSAIDCVALQQDIDKILEWCSLNGMKVNPSKCKCISFTRSSAPIRYNYSFDRHELDRVSSIRDLGLLIDRKLNFSEHVSATAAKAFAMLGFLRRNTAEFENINALKTLYITMVRSILEYAVQVWAPHHANQRDRLEKVQRRFTLFALRRLPWRNGVWWSSYSDRCALLRMQSLEQRRVLLQRMFVFDVLSDRIDSQQIRDEINVYRPVRQLRNLPMLRIPVHRTLYGHNRPIDRCCRFFNEVSNEFSPGLPRKNFKLKIINL
>CR1-17_CQ_pol#LINE/CR1 2-1648 [Culex quinquefasciatus]
SSSAKEAAQLCADFFKTTFVQHEDPVSDHHLRFVRPQDLTILQPRLTRQDVLRALSQVNTKKGPGPDRLSPLFLKSCAGSLAHPVSILFNLSLQTGIFPSVWKTAAMVPIHKSGNLHNVENYRGVSILSSLAKLLELLVLNAMKEATNPILSDYQHGFRKARSTLSNLMVYVPYVSKALGNRTQVDSIYIDFAKAFDRLPHKIIISKLAKLGLPDWLLTWLSSYLENRKAYVKHGRSCSKLFSVTSGVPQGSHLGPILFNLFINDVCEVIKSEKVMFADDLKFYREVYNTKDCAELQDDLSAMIEWCSANGMQVNASKCKVLSFYRGNSPILYRYLSDGKELERVESIKDLGIVVDKKLTFKEHLSATVAKARTTLGFISRNTQEFKDFQAIKCLYLTLVRSILEYGVQIWAPRLIGDANLYERVQRTATRMIIRKLPSNHPVRQAHYEERLQFLRMEKLSLRVSFLRRLFLFDVVNGNSDCQALIALLPPQAPERNRRGDVLFRIPNDGWRSYFNPFYECCKCFNSVCVKFTNGMSKLSFKSRIKGID
>CR1-18_BF_pol#LINE/CR1 66-3596  [Branchiostoma floridae]
MSLMISRSVVFLLLFLNTIQASTIGHGPGKVRRTKPPCYMFPGGSAQPRPPLPSLWYPVLSLNDKEIASWQNLNFSSAGILLKQARYLRTSDRLCLLYICSVLMAQAVDLETNPGPRPPKYPCGSCGKAVTFKHKAVCCDRCDFWFHHDCQGLGSFMYPYLSNSNVSWICLNCGLPNLSTTFFSDSRDLSSPNPFSPLSNDSPGMPQAASSPKSPVQNKHRSNARPLRLINANFQSLRNKKVELETLVDQTKPDILVITETWLDSSCNISEYFPSHLNMQVFYRNRPEDSHGGVLIAVSNEFICTQEPHLETNCEMVWVKINLVGSKCLNICAYYRPQVGDSVSLDCLEESMERICNKRNNHVWIIGDFNFPGWDWSDPQQPVLKPDCPYPGLHRRFMELLSDQNMSQVVDKPTRYDNTLDLVLMSNDNCVNSVRTLPPIGDHDLVFIEADLRPQKQKAKPRKLYLYKRSNWDKFRDEMEDYKTHFLELVEDDVDVNELYNNFTQKLSMCVDKYVPTKMSSGKKHLPYITPELKRMMRKRDRFYRKTIGQNSTERKDKLNQFKKDINKKMKECYWKYIEDVVLDMDVTDPEQSHATSTSKQGTKKFWSFLKSMKSERAGVSNLRNEGTLISDNKEKADLLNQQFQSVFSTEPPDDAMPDMGPSPHPPMKDINIDTNGINELLANLNPHKACGPDHVHACVLKELSSTLSPILQAIFQKSLDTGSVPEAWKEANIAPVYKKGNRLDPANYRPISLTCICSKIMEHVIASTMMNHFDSNNILYDLQHGFRHSRSCESQLLSLTDDLAHNRENGIQTDLIIMDFAKAFDKVPHLRLIHKLQFYGITGKTLTWIQNFLQGRSQTVVLDGERSDPVPVTSGVPQGTVLGPILFLAYINDLPSHAAHAKVRLFADDCILQMSVKTKNDCEKLQHDINSICSWEKTWLMAFNPSKCEVMSVPASRNPITFPYSLHQHPLTKVSSTKYLGLHMSSNLTWGKHVEKTTSKANRTLGMLRRCLRISSTAAKERAYMALVRPCLEYGCSVWDPHTKAQVSSLEMVQRRAARYVFNDYRRTSSVTSMLHNLGWQSLELRRKIARQVTLYKIINNIMYVPHTTMLVPVARCSRRTNHSQTLQAIACRNNYYRLSFFPRTIREWNGLEPGVAEAGSLSQFKTELGRTLLH
>CR1-18_CQ_pol#LINE/CR1 2-3001 [Culex quinquefasciatus]
ADGPXRTSTPIPGSTTTLSNVPPVSAAPTHAEQSGVTPVVDERLLLYYQNVAGLNTKISDYALAISDAIYDLYAFTETWLNEDTLSHQIFGPGFHVIRADRSAANSVKTSGGGVLLAVRSNLRPRQLSPPHCSALEQIWVALPLASTTMFICVXYIPPTHTNNSEIISQHCDSLSWISSQMKPNDSILIIGDFNLPCLRWTLNPAGFFIPDAKHSTINSTVSQLLDDYSIANLGQLCGIQNNYGNVLDLCFASIGMSTSCNLTQAPSPLLRACRFHQPLLVSIECRVHAFRDTSSQFFYDYRRGNFQGMNEFLKNVDWNHLLADRDANSAAVAFTEVVLRAINIFIPKKLHLPACHPAWSNDQLKRLKTQKRAALKKFNKHPTRRWKVQYNSINRKYSRLNNTLFLRYQRXIQHRLKQNPKQFWNHVNSQRKETGLPSVMELDSREASSPIAICELFRSQFSSVFTNEDLDDTTVQQAASNVPDRDTIAQHPLVDPDTVSRTCSALKYSTSSGPDGIPAAVLKSCSDSLALPLSKLFNISLKSGVFPLSWKKSYIFPVHKKGPKRNVRNYRGIAALCAVSKLFELIVLDHIKLNCNNYIAQEQHGFMPKRSTCSNLVAYTSFISQSMQKRQQVDAIYTDLSAAFDKINHRIAFAKLERLGFCGSFLKWLCSYLSDREMCVKIGDVLSAVFAVFSGVPQGSHLGPIIYLLYMNDVHLLLKCHKLSYADDIKLFAVINSSNDALLLQDQLNIFAHWCDDNRMVLNASKCSVITFTRKRSTISFDYNLSNTSLSRSSSIKDLGVVLDCQLSFIEHISYTVSKASKVLGFVFRVAKHFRQVSCLKALYCSLVRSTLEYCSVVWAPFYQNGIERIEKVQRKFTRYALRHIPLVDPLNPPSYADRCNSLGLDLLSVRRDVAKAIFVSDLLKSSIDCPEILEQVNFYIQRRTIRSHQFIRIPRASTNYGRNAAVSSMCRVFNDCYVHFDFHLSRNVLRKLFLNHFKT
>CR1-19_BF_pol#LINE/CR1 1-3261  [Branchiostoma floridae]
MAPPSHPSDSYLMSLRTFSFVFTALLAISMSSNDSSSAPCGICDLPVTWSDRGVECETCGTWFHASCQHIGSDTYLNITLDTTWRCVICANANYSSTLFDLHGVEQEYSRNLSSSSLPDSESGFKPLHSSTPTRNSQHGRQLNRPLRMLNVNFQSASGKPAEIANMLHSTKPDVVFGTETWLYPDIKTTEFFPDGFNVYRKDRTGKIGGGVLIAVRDHLQCTEVPELDPGGEILWLKLLIRNQRPLYLCVFYRPSSSDKAALEKLDMALRRASAMKNAQLIIAGDFNFPSWNWEAMTLKPNPVYTTLHQQFVDLLYDTGLDQIVQDPTRGENTLDLVLTNSPSLIPRVEVIPGISDHSIVYFEYKTKPEVLQNANRPILLYGRANWEVMKQDMETLQQSFTDSEHMSTEELWQKFKLALKVSMAKHIPTKKPRRKESLPWMTSGIHHLIRKRDRLYRKMKKSGSLDMRKEVKNLNREIRKQMRRSYWRYTEHLFSPTSSEESSRPSLKRFWTYMKHQRSTTTGVPALKSNGKLVIDPKQKAELLNKQFYTAFSEGATYTASEFKDRCPMPDSRNDFPSMDNITISTKGIEKLLTRLNPTKAAGPDGITPRVLKELATELSPILTTIYKSSLHTGQVPKDWKEALVTPVFKKGEHYKASNYRPISLTSVPAKILEHVLVSAIMHHLESNNILSTQQHGFRKHHSCETQLLEFVEEASSAMESGVATDVIIMDFQKAFDRVNHSLLVHKLDHYGIRGRTNSWIANFLSDRKQAVVVNGAQSSYVDVRSGVPQGTVLGPCLFLTYINDLPERISSPSRLFADDTAVYRLITCLEDSSKLQEDLGKLEDWESEWDMAFHPDKCSQLPLTRARKPPNAHTSYKLHNHTLERVPSAKYLGVTLQADLSWGKHIDNTYSKANRTLGFLRRNLRVCSSKTKELAYKALVRPVVEYASSVWDPHTNRDISKIEKIQRRAARFVLNRHRNTSSVSDMLEQLQWPSLQDRRRTSRLAMLYKILNGLAHVRCKTLKPLPSSNRCRRGHSLQLQHIPCRTNYRLNSFLPRTVREWNNLSEETVQSPSLARFILKVSSAS
>CR1-19_CQ_pol#LINE/CR1 2-4366 [Culex quinquefasciatus]
IXRTQRRXFLGXFKCCREHSGKSATPPVPTLNDADDAEFAARVCTAIDSKDTGACFGVDWRSGRFTHGSSDRITCGTIVPTIPASFRSSSQHLPVRVLQSSPGRAVESLMRAPRLPDATTSSPRQRLRTPASRSHQSRPGAGVGVGGGVSQPAPFGKYPSRSQHFLPDVRPTSSSCASTSATQTAIVSPPSFRAIQFSPGRAVESPMGAPRLPDATTSSPRQRLRTPASRSHQSRPGAGVGVGGGVSQPAPFGKYPSRSQHFLPDVRPTSSSCASTSATQTAIVSPPSFRAIQFSPGRAVESPMGAPRLPDATTSSPRQRLRTPASRSHQSRPGAGVGVGGGVSQPAPFGKYPSRSQHFLPDVRPTSSSCASTSATQTAIVSPPSFRAIQFSPGRAVESPMGAPRLPDATTSSPRQRLRTPASRSHQSRPGAGVGVGGGVSQPAPFGKYPPRSQHFLPDVRPTSSSCAGPSATQIANASTLSATVPSQLANDVQPQRPGSVDRRDSSLLTIYYQNVRGLRTKTNQLHLSLSSCDYDVIAFSETWLNAKIVDSELSSDYTFYRADRSRETSVLERGGGVLIGVKKRFHPEPIHLRGGEKLEQIAVRIPLPGKTLFVCCVYIPPNSDATIYTQHSSCVQQLCDLAQGPDEVIVVGDYNVPNLTWHFDEDINGYLPSGQSTEQEVALIEDVLGTGLQQMFDLPNANGRLLDLALVSDSSRFQLIEPPRAILKVDAHHRPFILVLETQSTGTAAEQSGTYYDFANCDTMALNNSIASLDWANLLLVGSVDDIVERFYDKLNEIIREVVPLKHRRPHPNSHQPWWNRETRNLRNRLRKARKRFLKHPTEMLGRELADRELHYEMSLEAAFRGYISGIESNLKREPKSFWAFVKKRKQDKGIPQDMVYRDSSASTPDDSVQLFADFFKTVYSANQPTTSNESLDKILPHELHMPLVCLTEEDVRKVLASTDASKGPGPDCIPPSIVKQCAATLANPLAIIFNRSLESGVFPAKWKVASITPIHKSGNVHNVENYRSISILSCLPKVFEKIVHEFLSRAVQPIISACQHGFMAKRSTTTNLMTFVTDVLRSMESRCQVDAVYVDFAKAFDRVPHQLAVEKLRRLGLPEWITTWLHSYLTSRSAYVKLGGSKSGLFMIPSGVPQGSHLGPLIFLLFIDDLCHWIKNDKVLYADDLKFYRTITSPLDCLALQSDIDSLMRWCDQNGMEANAKKCQVITFDRKLRPITHAYMMGISLLDRVCSVKDLGVTLDRKMTFNEHITSVTAKAFATIGFIRRNTTAFKDIHALKALYSALVRSQLEYAAQVWAPYHNVHIARLERVQRAFVRLALRTLPWRNPPEQTSIEDRRRLLGLDTLLKRRQRMQQLFIFDLLTKRLDCQKLSQLLIVYVPPRNLRRNPSMFRLSVHHTVYGHNQPFDVCCRLFNVVSDRFVLNMTKDSFKKLISC
>CR1-19_CQ_pol#LINE/CR1 329-3493 (after collapsing 4 copies of a 218 bp-unit tandem repeat in one) [Culex quinquefasciatus]
MRAPRLPDATTSSPRQRLRTPASRSHQSRPGAGVGVGGGVSQPAPFGKYPPRSQHFLPDVRPTSSSCAGPSATQIANASTLSATVPSQLANDVQPQRPGSVDRRDSSLLTIYYQNVRGLRTKTNQLHLSLSSCDYDVIAFSETWLNAKIVDSELSSDYTFYRADRSRETSVLERGGGVLIGVKKRFHPEPIHLRGGEKLEQIAVRIPLPGKTLFVCCVYIPPNSDATIYTQHSSCVQQLCDLAQGPDEVIVVGDYNVPNLTWHFDEDINGYLPSGQSTEQEVALIEDVLGTGLQQMFDLPNANGRLLDLALVSDSSRFQLIEPPRAILKVDAHHRPFILVLETQSTGTAAEQSGTYYDFANCDTMALNNSIASLDWANLLLVGSVDDIVERFYDKLNEIIREVVPLKHRRPHPNSHQPWWNRETRNLRNRLRKARKRFLKHPTEMLGRELADRELHYEMSLEAAFRGYISGIESNLKREPKSFWAFVKKRKQDKGIPQDMVYRDSSASTPDDSVQLFADFFKTVYSANQPTTSNESLDKILPHELHMPLVCLTEEDVRKVLASTDASKGPGPDCIPPSIVKQCAATLANPLAIIFNRSLESGVFPAKWKVASITPIHKSGNVHNVENYRSISILSCLPKVFEKIVHEFLSRAVQPIISACQHGFMAKRSTTTNLMTFVTDVLRSMESRCQVDAVYVDFAKAFDRVPHQLAVEKLRRLGLPEWITTWLHSYLTSRSAYVKLGGSKSGLFMIPSGVPQGSHLGPLIFLLFIDDLCHWIKNDKVLYADDLKFYRTITSPLDCLALQSDIDSLMRWCDQNGMEANAKKCQVITFDRKLRPITHAYMMGISLLDRVCSVKDLGVTLDRKMTFNEHITSVTAKAFATIGFIRRNTTAFKDIHALKALYSALVRSQLEYAAQVWAPYHNVHIARLERVQRAFVRLALRTLPWRNPPEQTSIEDRRRLLGLDTLLKRRQRMQQLFIFDLLTKRLDCQKLSQLLIVYVPPRNLRRNPSMFRLSVHHTVYGHNQPFDVCCRLFNVVSDRFVLNMTKDSFKKLISC
>CR1-19_HM_gag#LINE/CR1 805-1527   [Hydra magnipapillata]
MTNLTPAQLKQVEDAIKKLIHAETAKWSAKISELEQVIKQQQLIIDKLIQNPNELTNTTTSSIESSWVTVASKNIKKKQPIEQLKIINTFAIEQQQKKKREKNVIIYGIKESAKLSVADKHIDDKETVQNILVTISSDAKPKSVKRIKSTSSKPGPIIVELSDVSERNPLLTAAKKLKNSDNYKNIFISPDLTEAERYLNYQLRMKRNELNSNINLKTSPFRYGIRSSGVVKLKNIQTTT
>CR1-19_HM_pol#LINE/CR1 1541-4474   [Hydra magnipapillata]
SSTLLPANLKYKSKNLHNKKTNYSVNCYYTNATSLDNKMADLISISRTFDYHVIAISETWFRNDSVPNIDGYSLYRKDRQDGRRGGGVAIYITDVFNSHEVNQFYTNLLEQVWVSVKFNNKHILIGCIYRPNDASLIKYVAESFKLAHSLIKKPYDDCLIVGDFNFPNIKWSNDGIESFNPNNPTEYDFWNIFQNSLFTQHITFPTFQTDYGSSNNMLDLLFTYNSNSILNLSPSTILGNTTKGHFSITWRFLVSELFTESESQSFNYKKGDYDSISNFIASIDWEFLFLHKTADQMFNILISNYRTACTYFIPKINKTKKKYDPWVTPHIKNLIREKKSAWHINCSTKWENSELKIKYNRLNRSVKTEIFKAKKAHEKEIISKSQNNPKIVYKYINKQLKIKDRIRSLKDTSGRIIEALPDIVDLLNSQFKSMFTLESSENFPLLNKSGILSECIYNENLDFSISDIIQELADLKPYKSFGSDGLHPLILKICAKSFAIPLTKIFHKSFNSGVVPTQWKLANISPIYKKKGDKLLAENYRPISLTSVACKIFEKLVKKKILKHINDNKMLSANQHGFLYHKSCVTNLIETFDIISSSIASHQFIDVIYLDFAKAFDSVPHNRLLLKLRSFGINGKLLQWIKSFLVGRKQRVTINNTSSAWVDVLSGVPQGSVLGPLLFILYTNDLAKLTETSEIFADDTKLFSKTLSQSNFVDLQDRLRLVYEWSNTWLLKLNTSKCCVIHYGRNNPHYNYFLQNNQGINQSLRSSTKERDLGVIFTSNLKWSAHIQTVVSKSLQILGMLKKTFTFIDEKMALKLYKVFIRPHLEYGVSIWAPFLKADMALVESVQRKATKWAYSLRHLQYCERLKRLNLPSLEFRRLRCDLIQIFKLIHRFDIVNDKYLPKYINSVSRGHHSKIRREYVLNCLPRYNHLYNRSAKYWNNLPEQITLYSTVLSFKNRLDSWLWKKFGTNIYKTGCL
>CR1-19_NV_pol#LINE/CR1 5-3352  [Nematostella vectensis]
MADRRTGACSSAFAALFILLAISSKIYAHTITPKCDLHGKRPVEGLTNFTWNMFKPLGQFTIRRKPSKGTMITSAFRKHRTFVSIIPGLLLLCGDIISQPGPAANAGLRHSSIKCLGINARSIKSTHKVGSAIVCNSERVQDLAYSENADIVFINETWLNSSISDEEVFHSGYTIYRRDRNDREGGGVLIAAKSDSFKAIKEWKPDMTLFQDLEVVSAELTTSCNRKVLFSSFYWPDPDSDPYVWLEKFNNYLDYACDSFDTMLISGDFNMSKISWASEEQSLGARERSFTEILNDHYLSQMNHFPTRGDKILDLVITNASDQVCVNEVLSPNEAGVFSDHGVVCFEFSAFVKAPSKFHRSVYNYTKADFDGLRASLSALELTMSSNENSDIDTDWQNWKDLFLAAVADHVPSKKLRGRNPVPWMNGTILDLIKKKETTRRRLKKTPAKASLREKFKALRAEVKQALRESRENFFQSLERDYKNNTKRFWSVLKQKSKSRGLPSQVSMATVNPPTGSQDPTPLRTTADDPEAIANLFNKYFASVFLKDSLQDLNTDPEHCAPPVPELSNISFDINDILSVIRGLDASKASGPDNIPVRLLKETAAVIAPSLCQIFNKSIKLGKFPSEWKIAHIVPVYKKDSAQQVENYRPISLLSVVSKIMERCVFNKIRERVHCLIQRCQHGFIAGRSCVTQLVEVLDTIGSHLDNGNQIDVVYLDMSKAFDRVSHRMLTRKLVQYGFGGNLLKWFTSYITNRSQRVAIPGGVSTCQPVTSGVPQGSILGPILFVLFANDLPDSVCSCSVATFADDTKVFNVINSADDTDVLQSDLNSLNGWAASTGMTFNQTKSKVMRVSRKRKPVLKTYSLGGLPLACTETEKDLGVWMSDDLSWTKQVDEACSKANRTLGFVRRHSRSIKKTNIRRSMYLALVRPHLGYATQLWAPQTKDLIRRVERIQRRASKYMLGLPFRCSQTYKERLIQLKLLPLSYWHEYLDMSYFYKIINGLVNINPSIVPKVRSVRPTRSSTNSSAPQFFARKCKTSAFQKSYLNRCTRIWNTLTNLLNSSSYSDHASFKRALLNYYLNALSITYDPEDPRSWKSVCLTCNRARVLTHQISCCF
>CR1-20_BF_gag#LINE/CR1 387-1430  [Branchiostoma floridae]
MLSQGLRDENASLKEVIRILMTDGKHSSSTVREDTWNHVSKGPPATSNLFPSSSTSVPLSNRYQSLLDIEEERSDDEYQRSPTPQVKNSRLFPRRSGFSQGTRGPQSPRRSGFSQGTHGPQSPRRSGFSQATRGPQSPRRSGFSQATRPQMPQHKSQPWKRPDVVILADSMTKDLNPRRMSRSTGKVVICRTHRGARLEQVERLAENDLSDIQPQLLILHVGTNNLHEDISSITRKFETLGNSMSGNSTQLCFSSLAVRDGSTVKVSKVNQYLASLCARKGWGFLDNKDIELHHLYDGVHLTAKGTALLATHLNDYIRQGFQEDVFNRRGRWSEVQRRLVQLSRKSY
>CR1-20_BF_pol#LINE/CR1 1379-4510  [Branchiostoma floridae]
MERSPKETSATQSEELLTQQTDTDSCLNDNNNDERLSIGNISLSSRTLRSVSSSAAPPLHRDDNSKDRKELHKVDSASQIKVLYMNGRSIKSVNSRRNKLVLFQNLVESNQPSLVAVTETWLTPSIKDDELLPKRYLLYRKDRCTVIPGKIGGGILLAVNGNILSRRRSDIEPVDEILVCEMLTEKQGKIGIILFYRPPNGDLLAFTNNLQYTLRLADQEYNKVVLLGDLNLPNIDWCSLIGNSTTENQFCDVLNDFSLTQVNNVTSNSHNHLLDVILTNVPEKCSKVEKVSSDFPTDHTILQFDLNFRTVFRQSNMKRHVYQYKKCNFDNLRQSLRDTLGSQGFVESDSIDDCWDTWLQCLCGLVENHVPKAKIKNSYSMPWCDGDVYHLRNKKLTAWRRAKKTNRPAHWHKFRKLRNGLQKLIHYKYKLFLENLGSLVNNNPKKFWTFFKNKTKSHCLPQILKYKHYQGTTPTDKANLFNKFFFSVFTTPVVNQPLPEISAWRHPFLGNIDFTIKEVLDVLLTLDCTKAIGPDSISPVILREGAHVLAPQLTAIFNKSIQSGIVPAKWKEANVCPVFKKGSKDSVENYRPISLLSVVSKVMERCIFNRIFPHLQDQIHPLQHGFIKGKSTTTQLLETFQTVGTTLDHSGQIDIIYLDFSKAFDSIPHHLLVHKLKTFGFHSNLLNWFSDYLSNRRQRVVIEGVSSDWLPVISGVPQGSILGPLLFLLYINDLPSTIECPMALYADDSKCYKQISSPADCISLQHDIDNMVEWSVTWMMKFNTSKCNVLTICRSKTPVLYDYEIEGQVLSSVTEFNDLGVTMSNCLSFKSHIKNITASANSTLGFIKRSVGYHAPANVKKILYITLVRPKLEYCSLIWSPHTHNLITSLEKVQRRATKYILNNHTTDYRDRLIYCQLLPLSYRRELLDLSFLFKCFLGQYGIDIHQYISFPLTSLRSNSQAKLQPQKCLTTTFKNYFFQRIVHIWNALPLNIRTLKLSPVVTINTFKKAILAHYLSLTNDRFNSNDVCTWVTHCQCPSCTPF
>CR1-20_CQ_gag#LINE/CR1 114-865 via tfasty with CR1-5_CQ_gag, 1 frameshift. [Culex quinquefasciatus]
MGCKQCQKKVSDSERIICQGFCGASFHMICAKVDIPLKDALGQRPNNAFWMCDDCAKLFMNGHFRLIAKGHDEGNSEIADAVKTMQNEITKLTSTVIAFTEKVAENSASTTTWPSKRPRDSETPTKVSIPSASRGTKAMTTVPVLASAEQDDLWYIWLSSFPPSVTEDDIRLMVKECLSVDDDDPIAVKMLVDISTLTSITFKVGVSRDYRESSLDPSNWPEGLAFREFVDMNNRPAPSVTPMGFSRRRLD
>CR1-20_CQ_pol#LINE/CR1 863-4782 [Culex quinquefasciatus]
LTAAVLPSSSRNHPAAVTADPGRTLYRIRDDPRSTGTVAPSLCGIPANCTCHPSRPGPVSGRGNGVIQTENSGKYTSRFDLLARPDVLPSFSQRSTLSTTGHSSGFSDNQADPGRSFKSDMDGSQSTDTVAPPLCCNQQHCSCRPSRPGPVFGTGNGAIHTGNSGKYLYLPDDIARPDVLPNFSPRHATTTTAIRDIDAEHADPGRSTYRAMDDSRSTDTVVPPLCCNQQHCSCHPSRPGPVFGTGNGVIQNLFSGEYSRSADIDACPDVSPSFSQQLSMTSQHGCSSDPPEVHPPVQLIPPNSSLKPLSVYYQNVRGLKSKIDEFFLACSELEFDIIILIETWLDDSVTFVQLFGDEYHVYAVNRGKKNSVRIVGGGVLIAVRRLLDSSVCKEGMVDILEQVFVTVRLAHINLHICAFYLPYEKRLEHNLLEKHINSVTTVCELARSEDIIIAAGDYNQSYLVWRDDGRGYATADLAETHARLRTERASHETLLDGMAICNLRQIQTVRNANNRILDLIFISDDESLPTVHCVEDPLVPLDSHHPAVWFEIEAVQRVAFQDDFDPNSLNYRRTDFATMCTNLAAVDWSPVLTCTNVNDAVTQFGIIVRLHLQRLTPRRRPPRKPPWSDAHLKWLKKIRSAALRQYSHDHCTICRRRYKKACSTYKRYNKLRYRQYVHKTQCDLKRNPKKFWSFVKTKYKENGLPSSMVYGSRVASNSEEKCTLFAEHFASVFNKPDVQNDIDPACLDAVPSNLVSVDTFDITRSMLRKAIAKLKSSFVAGPDGIPAAVIKRCGSMLEVPLLKIFNMSMTEATFPEEWKKSYMFPVFKKGEKRRVENYRGITSLCSCSKVLELIMCDYLMFNCRNYITFEQHGFVAGRSVTTNLMEFVTTCFNSMSEGLQVDAVYTDLKAAFDRIDHDIALMKFAKLGFSSRICSWLESYLKGRRLQVKIGSSLSVEFSNWSGVPQGSNLGPIGFALFYNDAGLSLHGNCKLIYADDLKLFTTIESLADCYVLQSHIDAFAEWCRLNRMTLSIEKCMVISFHRKTKRHVFTFDYTLLNQPIQRVDCVKDLGALLDFNLTFRQQQASVIEKANRQLGFMFRATREFDDPACLRTLYYALVRSHLETSCIIWAPYHQNWIDRIERIQRKFVWFAARNFNWRDPSNLPPYEHRCELLGLMTLENRRKLSKAMFAAKLLTGELDCPNLLEQLGAAVQARSLRTRSGFLHRTLSTTEYMRHSPFRSMCSIFNDFFDLFEFGESTTSFRTKLTSRLSIRGRRDNAGENERPRRSTR
>CR1-20_NV_pol#LINE/CR1 19-3468  [Nematostella vectensis]
MAANFLTPVFIAFLAILFNQKLHYSPNLTSGINGFGLNCILANSESILTGLEAFYSHNIRANKMNVGRSSSEHKHLLLCLLLLGGDIQLNPGPKWKFPCGSCNKPVKSNQKGIQCDNCNLWYHTRCCSINDDLYYTLAASSCTWLCVSCGFPSFSSSLFESSSIELQNSFSSLDSLHQDTQNISSSTIRSPETSPLDSSSRNSSNTRKQSKEKLTGMILNCNGLKGTDHITKFQALINLHDPDFILGTESKLCPDISTYSIFSQNYSVFRRDRNKFGGGVFQAIKSDLVCTEEPDFEVDNCEIIWTSLKLANRKSIYMSSYYRPPNQPSDSIDNLNESIRRVFNKVKNFPNIIIGGDFNLGDIEWNSSVPTPTNPATASLHQKFLQTIDDFSLSQHVKTTTRPSSGKTLDLLLTTYPNVIVNTSTASGLSDHLAVIFEVNLKPSRSLKPPHKVYQYKKANFPDLCKFMSDSSTTFFSTNPEKRTVEENWVLFKTSLSTGISQFIPQKSSRPKYKLPWINTNIKREMRKKDRMHKKAIKSKNQQHWEAFKRQRNLVSKLIKDSHNDYLNNIIGNSLKDNPKKFWSYVRSSKSESIGIPPLKNNDSSVSVTDAHKAETLNTFFHSVFTQEQLPTPVLGNSPYSSIPDLHISAEGVCKQLSELNPKKACGPDEIPANVLKEVSQSISHWLAFIFQQSFDCNKIPSDWSNALITAIHKKGLKSEPANYRPISLTSICCKIMEHIILSHMAKHLSSHNILINQQHGFREKFSCETQLISAIHDWAKTINFRGQTDVLLLDFSKAFDSVPHQRLLIKLDFYGIRGNMLNWIKAFVSNRKQSVSVNGTVSSSKSVVSGVPQGSVLGPVLFLLFINDISTSIQSNLRLFADDCVLYREVASLQDCQALQQDLDRLSVWSKTWQLKFNVSKCYHLGITRKKIPVKFTYSMDGKCITQASSTPYLGVTIADNLSWNEHCDNICKKANSTLGLLKRILSGCSPEVKDSAYRTLVRPKLEYATSAWNPYTQCNINKIEMIQRRAARFVFNDYSRYSSVSPMINSLGWESLEQRRQLNQAHMFYKIYNGLVGISFPPEVTPITRVSRQPNCAPFHQLVTLNDTYKYSFYPRTIRTWNSINLSTIPDSLAKFKDSLLLKVQTN
>CR1-21_BF_pol#LINE/CR1 1-2354 via tfasty with CR1-D_pol, 1 frameshift., fragment [Branchiostoma floridae]
LEAIRDVYLFQHVDFATRHQANQNSNVLDLILTNEMHMIDTVTSRPPVGKSDHIMLEWSYKCYVERSQNGREFRLYHKGHYDDMREDLEKDWDTMLEDLDTNECWEVLSETVRKSSDKNIPKVNATQRRRRLSWKDKETTNKLNKKPGRDTSTQEGHVDYVKYTKLRNQARWAARKAVKKHEKEIARNIKGNTKLFWKYVNKKSKTRHNIPDLMDGDEKARTDVEKAEILNKFFVSTFTKEDTRCIPQPEESTYKQELKGIELNIEDIQKRLENLNPNKSMGPDQIHPRVLKELAGTLAPPLYILFQKSLNEGEVPTDWKIGNITPLFKKGCRKTPGNYRPVCLTSVVGKVLEGIIRDEIIKHMRRNELFTRQQHGFLPGRSTVTQILECLESWTTWLDQGIPVDVIYMDFRKAFDSVPIQRLLRKVESYGIKGSLLKWIASFLENRKQRVCVNDSHSRWSEVHSGVPQGSVLGPVLFTIFVNDMPNAVTCHLKLFADDTKIYRTVPNIRDCEALQQDLDSLQLWASRWQLQFHPDKCTVIRIGGGHPDFSYKMKDEANPLPLSLEFTEEEKDLGIIVDKDLGFNKHILTITKKANQIMGLVWRTFEFMDKCMFLTLYKSIIRPHLEYGASVWSPHLWSLAIEIEKVQKRATKRVPGLADLPYPERLRSLHLPTLVYRRLRGDLINTFKYTKGLYDTPCLVHLSVETRTRGHQLKLKRSLAKTNTRLYSYTNRIVSWWNNLPEEVVMAPTVNGFKARFDKHMKDHPVVYNHRALDHPLRPKMSVS
>CR1-21_CQ_pol#LINE/CR1 1-3867 [Culex quinquefasciatus]
RQLGVPQKPSRGVKCHQSAWEYGGHRAPKPVKLLHVXEFPKSQEMSIPHSHPSAPIDSQPPRDVAGCPAAYVVGLGRTYQSIEVGPHSSDTTEPIADTVSSAQICSSHQRRPGHVFGHGSGANQASILGKYLRSPGTSSLPHVPVAFSDRYSSDVEFELTSRFLNGPSNDYTHLAEWAGACELFTSDNVPVLEGCQCPGCFLVPFTQPPRDPGGQLAPQPVTFLCFNCIQKNHEISVLHSPSSTRRHPSCPDPSCHALKDTGDFAAIVPSPEIADAQATQDPLPDILSQQDISSGLQPVAFQQVRFYYQNVRSLNNKVDEFFLACTDCEYDVILLTETWLDGSVKPLQLFGDLFAVYTTNRNPANSRRKVGGGVLIAVRKTLDSVVCVEAAADNLEQIFVTIHLKNQKMFIGCFYLPSEKRYEHQLVEQHLTCIETVRSISAPNDTIVVVGDYNQSHLVWKPLAGNRSFVDPLLTHTRGASERTTHEVLLDGIASNNMHQSNLVCNHQNRILDLVLINDGATHSAPEAALESLVSLDNYHPALTFEVSAALNNSYEDTLDPLGLNFRKTDFVGLQRSLGETDWSSVLTSIDVDEAVAAFGQILRSNLTRHTPGFLPARKPAWSNERLRKLKQFRASALNRYSQRRCPETKRVFNAASSRYKAYNKRRYAEHIKRTQANLRRNPSQFWKFVKSKYKETGLPAVMTLGETVATTNIEKCELFARHFASVFRPPGTPPTSQQHLETVPCDLIDLDVFQITEDMLKRGIQKLKSSNSPGPDGIPPVIFKRCFNQITAPLLRVFNLSMSQCKFPEEWKRSVMFPVFKKGAKRSVENYRGITSLCSGSKLLEIVVGEVIMFNCRPFISSEQHGFTPGRSVTTNLMEFTNFCIENLAAGRQVDAVYTDLKAAFDRIDHDIALQKFAKLGFSARLCRWLESYLKNRIIQVKIGTSLSMEFSNGSGVAQGSNLGPIVFNTFFNDSNSLFNDNCNLSYADDFKIFLAIDNLPDCYRLQSRLDKFANWCALNRLELSVSKCTTISFHRKTSREVFTFEYTLDGHALERLKVVKDLGALLDEPLSFRPQQAAVVDKANRQLGFLFRMTREFDDPLCLRSLYCALVRSHLESSAVIWAPYHQNWIDRIERIQKKFVWFACRRMPWTDPTRLPRYEARCNLIGLETLENRRTISKSIFAAKILTAQIDSPNLLNLLNTQISSRDLRNRPNFLARPRVRTEFHNNSPVRSMSAAFNEMYFLFEFHEPIPRFREKLRIEFQERTRTLLGAPRQDPVVGRLRIGRQ
>CR1-21_NV_pol#LINE/CR1 1030-4458 [Nematostella vectensis]
MAGHLMAPLIVLLFALHLQNFLLRWQSPLIESKAGPFISPALFEMSLDKVKIFMNNIHPNRRKLIAPRSNPSSLAFRLLILSGDIPLNPGPTYRYPCGACSKPVKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSWICCACDVANFSKSSSGPDIPDDNYYLSLSTSVQSSGSESPQPLTSSPRQRSPASNKMKDPHKLRVLTLNACSLKGKDKRLEFQSLIDNYKPDIVNVNETHINDTVFSAEILEKGYTIFRKDRNEFGGGVLSAFSNHLVVTHEEQMDGNYEGIWSKINIAGSKSLFVGSVYRTPDSNVDPLVALDGALCKLVKNPIPNILITGDLNLPSISWEDDNYAVRPNPTYGLEVNHKFLDIVNDHSLTQHVMEPTRGENTLDLVLTTCPEMVLDLVVEPGMSDHDLVLFDLNLKPSFNKKKPRKVFVFKKGNMGAVKTDLKKHLDNYFNNEAYHKLINENYDFFKTTITEIMKKHIPQKNISGRWNLPWITSSIKRLIRKKQRLYNHAKHCNNHAAWKKFKDLRKLVKKNLAKAHSEYVSQLLTVPEGSETANHTITKRFWTYIKSKKTHDVGVAPLRDDKGELVSDSLGKARALSSQFQSVFTHENNSSIPTLGPSPYPTIPSTLISIDGVIKLLQNVNPKKANGPDLIPCKILQEAAHEIAPALTFLFTQSLETGTLPNDWLSANVTPVFKKGNKNIPSNYRPISLTAVPCKILEHIIFHDIMNHLDTHNILVKFQHGFRRFFSCETQLITTLEDVGKALDLGRQTDLIIMDFSKAFDIVPHQRLISKLDFYGIRGLLKTWLTTWLTHREQSVLVDGVSSAPISVSSGVPQGTVLGPLMFLLYINDIGNDCKSSTIRLFADDTLLYSVIEATSDAHQLQSDLTSIEKWAEKWLMSFNPTKCFVMRVTRNREPIVFNYTLMNHILKPVEHHPYLGVELSNTLDWSWHINNKVSKANQTLGFLRRNLSNCPENIKEAAYKSLVLPHLEYASSAWDPWLKKHVKQIEKVQRRAGRFVKNCWDRTPGTVTNILNDLEWPPLSKRRQDARLTLFYKAVNKKSALEIPDNIDRRTRQLRSSHPDKFIELCPRTEAYKNSFFCRTIKEWNKLPRLTLDSTSADIFRERIKLN
>CR1-22_CQ_gag#LINE/CR1 1-717 [Culex quinquefasciatus]
GYCGAIFHMICAKVDVPLREQLDLNQTQVFWXCGECAKLFSNSHFRRVVKDHDGGNSEIAESMKTMQNDIANLTSTITDLKEXVQTQSTSLSTPXWPNKRQRGSSTDTPVKVAIPTASRGTKAMNSVPVIAAEPNDLWYLWLSSFPPSVTDEDIHSMVKECLSVEDDDPIVVKMLVKKGVDVSTLSSVTFKVGIGRDYRESSMDAANWPEGLSFREFVDIDRRPAPTVLPSGFSRRRLE
>CR1-22_CQ_pol#LINE/CR1 669-4508 [Culex quinquefasciatus]
TSAHRIAIGVFEAPPGIISQRRSQPSFAALPSPGRLLERPMEAPNHPVTVEFPASDQHSRPGPVFGCREGVFQATFTGEYHPLSDLSCPYSPSTSSVQPCHWFALHGTTSHIAALSSPGRMLYGRKEAPKRSDAVAFPASDQHSRPGPAFRCREGVFQPTFRGQYPITSSNDCFDLDIFSDSSQSPEPGRDPNQDSHLTIRPSPGRTVYGTMEAPDHSVTVEFPASGQHSRPGPVFGDREGVFQAAPTGEYRSNQVTSCSENSSAFSSRPSTSHQHDRAAREPFTESQAPTPPSSTDTNASGTCQQIRFYYQNVRGLKSKVDEFFLNCLDCDYDVIMLTETWLDDSINAVQLFGNAFEVFSTHRNAGNSRRTVGGGVLIAVRKSLDSTVCAEAAAVNLEQIFVKIQLKTQKVFVGCFYLPSEKRYEHQLVEDHITCIESVAGLADPSDYIVVAGDYNQSNLVWKALSGNRSFADPLHTHTRCRMEKTTHEVLIDGVARNSLHQCNLVPNHQNRILDLIFISDGAERTAVSEANDSLVPLDRYHPALVFDLSAVLDAEFEDVHDPLDLNFRKTDFSELIRSLENTDWTSVLGSSDVDAAVDIFGSVVRELLARHTPCRRPPRKPAWSNASLRELKRQRAAALERYTQHRGPITQAVFKAASSRYKSYNKRCYKSYIRKTQENLRRNPSQFWSFAKSKYQENGLPSTMVLGETVAKTNAEKCTLFAQHFASVFQQPGPAPASEQHLELVPRDVVDIDVFVASKDMLKRASLKLKSSNAPGPDGIPSVVLKRCFEQLSEPLLKIVNLSLQQSKFPTAWKKSVMFPVFKKGAKRLIGNYRGITSLCAGSKLLEIVVGEVISFNCRSFICPEQHGFMPGRSVTSNLMEFTNFCIENIAAGRQVDAVYTDLKAAFDRLDHTIVLQKLAKLGFSSRMCRWLESFLKERIIQVKIGTSLSAEFSNGSGVAQGSNLGPLVFTVFFNDSNALFVDKCKLLYADDFKIFLAIDNLADCYGLQSRLDKFSNWCDVNRLELSVQKCTTISFHRKTRREVFSFDYSLGGHVLERLEVVKDLGVLLDEKLTFRQHLSAIVDKAYRQLGFLFRMAREFDDPLCLRSLYFALVRSHLEYSSVIWSPYHQNWIDRIERIQKKFVWYACRKMPWNDPTRLPSYEARCNLLGIETLETRRTIAKAVFAAKILTAEIDCPHLLSLLNTNISSRNLRPRADQGLLARSFARTDYQRNSPVRSISDAFNDAYRFFEFHEPVSKFREKLRAEFKERTRIRLSRN
>CR1-23_CQ_gag#LINE/CR1 2-1912 [Culex quinquefasciatus]
ALKKLKSSKRAALKKFSKCPISVNRLNLNQISNDYRRLNKSLFLAHQSRVQNRLKQNPKGFWKFVNEQRKESGLPSTMIRDGVEVSTSSEICDAFRVQFSSVFADNNLSDPDVAAAADSVPDSGLVCSDLQVSREDFNAACSKLKSSTSPGPDGVPAIVIKKCANSLSEPLLRIFNLSLSLGVFPNNWKESYVFPVFKKGCKQDVKNYRGIAALCAVSKLFEVIVLEFLRHNLSHVVSDDQHGFFPKRSTNTNLVTYISKIQRAISDGYQVDAIYTDLSAAFDKINHRIAIAKLRRVGLHGSLLTWVNSYLTGRTMLVKISDNLSLPFSVTSGVPQGSHLGPFLFLLYINDVNFLLRCPKLCYADDFKLYAIIKRPTDMEDLQAQVDLFADWCRLNQMVLNPSKCSTITFTRKRCPTFFSYKILGNPLTRDSFVKDLGVLLDSKLSFKNHISYLCSKASKQLGMIFRMTKYFRDVNCLKILYLSLVRSTLEYGSVVWAPYYHNDIGRIEAIQRKFTRFALRHLGECPNYETRCSMLHLDPLSVRREAAKAFFVADLFRSNINCPFLTSELNVNIRRRVLRSHSFLVIPGARTNYAFNEPVSSMCRVFERCYPFFDFHLSRPRLKHDIXNFLREAYVF
>CR1-23_HM_gag#LINE/CR1 769-1644   [Hydra magnipapillata]
MSAIEEIATNAFKAAVDLKDLNATLMKSYQNDIALMIKAALLVALAEEKRSSELREKALKDKIDLLVKQINELKEIKPTATPSFASLLKDKSDESKQQRQQLSTFIAAQNKNIRSRELNVIVVGLNKSSTVDDKKLVEDFFVATGLEDATGIARVNRLKSSKNKTKLSNSNIIQVSLSNLSSRAEILKKCAHHKQEIYKGVYVREDRTPEQQTEFNTTRTQLKKLNDQLAAANILDNPFRNVIHRRTGRICCIDVIESTSNQCYVFSSPARALSDYASRTAASNSEISTAN
>CR1-23_HM_pol#LINE/CR1 1489-4612   [Hydra magnipapillata]
MLYIEEQVASVASTSSNQRPISATYFHPQPELCQTTLAAQPLLTQKSPLPTRRPRPITKAKIKPMQSDTSTVSPSHLCYWANNPCSLNNEKRQELFARLSALHKLSRPHVIFFAETWFTDLSDVAVPGYQPHRKDRDNRGGGVAIYTRDDIIVSEVSSTQLNSTSIEQIWRKIKLGQESFLLGCLYRPHDENDQNLTQCITSITTAQQILPKINCSAMLLYGDFNFSHTSYEPIEVNSGIATVAHVRGERQGDIRFQKCLDECHLTQLITFPTYRSSRHVEPTSTLDLIITNEPDRVIFIKQGDSLGDTPMGQAHCFIEGQFTVACLNNSPTLPLKPRLIWSRANYAAISAHIAAVDWETVFTGLNANEDYQLLVNVYNEATNLHIPSTTTPFTGKQEQWVTPELIEAVKAKRTSWAKYINAGRDTHKFLKISHRTACKKVKKMVKAGRQKYEELLVRDSESNPKRLHAYIRSKQSVSNNITSLETVNSNITTDTGDICASLNNYFQSVFVLEPEGSMPGFESRTEAVCVIDPAIFSIDIVQKCLNSLDERKSTGYDGLHPRVLSKCSATFAKPLSLIYKCSFATGVVPDLWKKLNVTPIFKKGSRLKASNYRPVSLTSIPCKIMESILQKRIMEHCVANGLISPNQHGFVHRKGCVSNLLETRDIMTEATHCRHAVDVIYTDFAKAFDKVPHKRLLHKLKAYGIQGALVDWIAAWLNNRCQRVVINSITSEWKAVTSGVPQGSVLGPLLFVIFVNDLPDRITHHMKLFADDSKIIGIIKKESDSITLQDDVDRAVEWSHIWLLHFNVEKCKVMHVGRGCNKSTYKYSMSNVDGTRRPLEKTAVERDLGVMVSNDLKVRPQIESAASVANRMLGRLKKTFRSRSFYLWRTLYLTYIRPHLEFAVQAWSPHLKSDIAILEQVQQRATKTISTIKHLSYEDRLQRLGLTTLEERRKRADLIEQFKITRKLELVSFVVPQKFSKSKDKYILRGHNHKLERQMVKNCEERYNFFSNRIVAPWNALSQEAVNAQSINAFKNNIRK
>CR1-24_CQ_pol#LINE/CR1 613-4164 (tandem repeat preceding it removed)  [Culex quinquefasciatus]
MEDLRLSVTVVPPHSRKYAFCSSHPSRPGPVFGPRRGVFQNHLVGKYPYAENDLVSLPDAHLTSSNVSTNESLRPDSAYRSQDAASQQSTDNADPGRPPIRIMEDPDPPDTVVPPHCCDSSRSGHQSRPGPVFGSREGVFQTPNAGKYQAAFQVGYALDPDPRLLSSDVQTTPVHSDDPTTPVHHDNRRSSAGQPVIFEPIRFYYQNVRGLNTKVDDFFLSCCDCDHDVILLTETWLDGRVTSAQLFGNNFSVYHTYRNPANSKRKVGGGVLIAVRNSLDSVECVQAVAENLEQMFVTIRTPSKRIFVGCWYLPPEKRFETELMEKHLSCIENIRRIAGPHDVIVVAGDYNQGSLVWKHLSGNRSYVDPQLTRTRTEKERLTHGVMLDGMANCNMHQCNLVKNDRNRILDLIFVSDDDCTVVAAADEPLVPLDAPHPALVFDIDASRTVFVQVDNNDRVLNYKRTNFDELQRTLADVDWTPVTSAMDVDTAVREFSNLLNFHLAQHTPQFRTPPKPEWSNARLKRLKKERAAALKTFTLRRCRMTKLAFNAASSRYRRYNRYRYNVYIRKTQSQLRRNPKKFWTFVKSKYKERGLPATMALGDSTATTNDEKCELFARHFSSVFREPEIISSTHHLDAVPRDLVDINTFVISRDMIEKATKKLKSSFSPGPDGIPSAVLKRCANQLIEPLLVIFNLSLRQATFPTAWKKSFMFPIFKKGSKRSIENYRGITSLCSGSKLLEIIVSDVILFNCRSYVAPEQHGFMPKRSVNTNLLEFTSFCIDNIAEGRQVDAIYTDLKAAFDRIDHDIALQKFSKLGFSPMLCRWLESYLKGRIIQVKIGASVSLEFTNGSGVAQGSNLGPIVFSGFFNDANFLFSGNCKLSYADDFKLFIPIDTLADCYVLQSRLDKFSEWCGHNRLELSSAKCYVISFNRKQSRELFTFDYHLGSHVLERLEVVKDLGVLLDLKLDFHLQLSSVIDKANRKLGFMFKAAQEFDDPLCLRTLYCALVRSHLETSAVVWAPYHQNWIDRIERVQRKFVWFALRRLPWNNPAQLPSYETRCNLLGIETLQNRRTISRAVFAAKVITSEIDSPNLLFQLNARVQPRNLRPTPGFLSRPLVRTVYAENSPIRALATAFNEFYHLFDFHEPVSRFLERLRTELRDRSRSSRPAENPQQRASRTRRSSR
>CR1-24_SP_pol#LINE/CR1 1-2856 [Strongylocentrotus purpuratus]
TDTDRGKQSKFKRKLRDRKLQIFYTNCDSLLNKRNELLLLLQSHDVDLVLLTEVFPKNHQNPLTHRDFILEGYDLHCNLEDGNRGVAIYIARDLYHLVGECDLQHSFHESVWILITLRGSDKLLIGCMYRSPSLDNHEELKRAFTQVTSINSSHVLIAGDFNYPNIDWKLGRARSHTEQEFIETVADCYLHQHIGEHTRYREGQRSSMLDLVFTNEDGMINHIDYVPGIGRSDHIGILFGLTVYTPDTHTPTPHLQFYRGQYDDMCKELDQIEWESELENKSVEDAWEFFLVTLTEKMEKFIPKSKPKHRRKKQRWMTREALRKQSQKHRAWKEAQRTKHPVDIMRARRLAKQLQTLTKQLCRNFEKDLAMNVKSNPKAFWRYTNSKLKTSCRLGELRTPDGERISTDKGKADALNTFFATTFTDEDKGHIPKLPPRHKGETLTSISISEDDVYKKLVHLSKYKCAGPDGIHPCVLKETAASVSEPLSIIYNASLKEGKLPSAWKVSHVVPVHKKASKMDVKNYRPISLTSVPCKILESLIRDEIVAHLMENDLLCDEQHGFVPGRSCVTQLLTVMEAWTEMLDKGTPIDVVYLDFKKAFDSVPHLRLLSKLETYGICGQIKEWIADFLQGRCQRVRVNDKLSDWTKVRSGVPQGSVLGPTMFVLCINDLPDGLQGSVKIYADDTKLYGKASTKDDLCSIQSDLDALMEWSNTWQMHFNTQKCKVLHIGPGNVKHIYALGDDVLEATSEEKDLGILIDDELKFHNHVAYAVKKANGVLSCIRRSFECRDRSTIPKLYKGLVRPLIDYGDSIWYPRFKTDSKTIERVQKRATKMIYDIRNRPYIERLRALNLPSLEYRRRRGDMIQVFKIIHGLERIPVDTFFEHSTSNTRGHSLKIVKQRCSTKIRQDAFSQRVINDWNTLPEEVVTATTVNAFKARLDRVWKDKRFCSPYE
>CR1-25_BF_pol#LINE/CR1 1-2973, fragment  [Branchiostoma floridae]
LSTRGREVKEENGKSKCKIGERKGKMKARNTNEMKLDVMYTNIDCITNKKAEFLAIIDETHPDIIVTTETKPKNPRFHMTKTDLHVDGYNLFTNVEEEGVRGIAVHTKNDLNVMEPNTALLQDSASEVQPIEIKLRNNDKLLLIAVYRSPNSTPENNEKINTLIRNINTLGYSHILIVGDFNHPEIQWSEGAGNTQSNKNEAFKFLEATNDAYLYQHICEATRHQLRQESNVLDLLLTNEGDMISDLIMRPPIGKSDHVVLNFKINCYANRTQYKNETCQYNKGDYDKMREELSLDWQEILGKLNVEDCWEVFSGKVAESANRNVPKVSSRKKKRKLSWRDREVNKKMNKKQKLWKKYCESRTKDDYIKYTRARNQVRWATRKAVKTYEKEKARNIKGNAKIFWKYVNSKSKVRQGIPDLEDGSSVAQSDTEKAELLNKFFVSTFTKEDLQHIPIPTERHYNEEITDIDICFEEVQQRLKNLNPNKAMGPDNVHPRVLKELADTLAVPLQILYVKTVQEGKLPDAWKTANVTPIYKKGCKKSPGNYRPVSLTSVVGKILEGLIRDAIVKHMKVNNLFTPHQHGFLPGRSTTTQMLECLDEWTEWLDRGTPVDAVYLDFRKAFDSVPIKRLLAKIQSYGITGNLLNWIESFLSGRRQRVCVNGEKSEWAEVTSGVPQGSVLGPVLFTIFVNDMPEIVQSKLKLFADDTKLYRSVVQREECNKLQRDLQVLQDWAIKWQLSFHPMKCTVIRLGKGHPDYTYSMLDNETRTLLEFTQQEKDLGITVDKELSFSKHISNICNKANQIAGLIWRTFAYVDKEVFLLLYKSLIRPQLEYGAPAWSPYTWKLALDLERVQKRATKRVPGLRSLPYEERLKALNLPTLVYRRLRGDLINTYKFLHGIYDTSCPFELNTSTRTRGHCLRIKRQASKSNRRSHFFCIRVVSWWNNLPEPVVTSPSVNCFKERLDNHMKKHSVYYNFRALDDPQLPGMSVT
>CR1-25_CQ_pol#LINE/CR1 979-4170 (skipping tandem repeat) [Culex quinquefasciatus]
MRAPRLPDATTSSFSYRTRSPAGCSHQSRPGAGVGVGGGVSQPVLFGKYQFSTPHTSPDARSDFSATVPPSTFVTLAAPGCVYHGTMEDLGSANSGMPAALTASDPASASSERGFLNVYYQNVRGLRTKTNSVLLALSSCDYDVIIFTETWLVPGIKNSEFAAGYDIFRCDRSAETSSLQRGGGVLVAVKTGRNCKDVELVGCGSLEQIAVRIVLPHQALFICCIYIRPASNIDVYQLHTGAVQQILGMAGVRDLVLVVGDYNLPALTWFFDDDTHSFLPINASAEQEVLLLESMLSCGLLQINNLASAHGNLLDLAFVSDATAAELIDPPCPLLKPDAHHKPILLKLDYDHGGNDDLDDADEIFDFNQCDYALLNERISAVDWDTLLDTSSVDESTANFYERLNSILHEVVPKKIRRMSHRYKLPWWNDELRTLRNRLRKATSRYMESKTAWDKVTVQNIEDEYNALNQESFRSYINNTQRSLKSDPSKFWSYVNSRKNANRTPTDVSYRDLNSTSPAIAANFFADFFKSVHSSDAIPPRDHEFEYVPTHYLPLPLPVLNDEETLKALSGVDGAKGPGPDGIPPSLIKACADSLTVPVKRIFNDSLRKGVYPAMWKVASITPIHKSGSTKKVENYRPISILNCLAKVLEKIVYDRLYAVVRPIISDDQHGFMQKRSTTTNLLTFVHSTVNALESGEQVDAIYIDFEKAFDKVPHALTVRKLRKLGLPAWITNWLLSYLTNRKAFVNLRIARSSTFDIPSGVPQGSHLGPLIFILFVNEICALTNSNTLMYADDLKLFRSVKNNVDCCSLQMDVNALLHWCESNGMKVHVKKCKVISFSRSRNPLRFDYTMGDGCPLDRVNSIRDLGVTVDRKMKFNEHIALTTGKAFAMLGFLKRNTAHFDDPFALKVLYASLVRSVLEYAAVVWAPYHVTLAARIERVQRAFVRFALRKLPWNNPLILPSYEGRCLLFRLQSLAERRTLMQRLFVFDLLRGNIDCRSIRNNVRFNEPARQGLRGERPLLWIPRHIFDYGYNNPLDVCFRQFNEICSCFDYVVSKTVFKTRIS
>CR1-25_SP_pol#LINE/CR1 2-2173 [Strongylocentrotus purpuratus]
SGETRYIYDKADYDAMYDKIMEIDWNNEFWEMSMEKSWSFFKTTLLDIFNRYTPKKTLNVSQRKKHWMNRETLEVVREKHRHFRKWQEMKSEKNREKYSSAEIEQQRRCYSRSSNQARWQCRKAVSSYEKYIASGVKKNARAFWSYVNSKITTRESVCNLTKPDGSKTETDQEKAEVLQDFFSSVFTQEDLQDIPLPLDVEFDTPLDDIQITSGDVFELLRRLKPNKSPGPDKIHPRLLKELADVLALPISLLFQKSLESKQLPQDWKSANVTPIFKKGNKSDSKNYRPVSLTSIICKMMENLVRKQLLDHLMTNDLISVHQHGFVVGRSCITNLLEVLDQWTQILDDGGTVDAIYLDFMKAFDTVPHHRLLLKLESYGVRGNVLAWLESFLSGRQQRVVVRGKQSKWGKVLSGVPQGSVLGPCLFLLFVNDLPKVVNSNISMFADDTKLYVRADTADLRKQLQEDLSRMEEWAEKWQLCFHPDKCTVLRLGKLPAEASTDYCMKKGTDSVTLSVTKVEKDLGVLVDSQLSFKDHISQTVLKANRVLGVIRRTFMYLNTDTMPFLFKGLVRPILEYGQAAWSPYRLGEQRMLESVQRRATKIIPGLRNLTYQERLTKLKLPTLVHRRKRGDMIDVYKYVNGLYTVQEMPFKMSTEDRTRGHSRKLEKKYSRLDIRKYFFSNRVVELWNGLPENVVAAGSVNSFKNRLDSHWSKSVPVSLLYEPV
>CR1-26_CQ_gag#LINE/CR1 12-404 via tfasty with CR1-3_CQ_gag, 1 stopcodon. [Culex quinquefasciatus]
TVEPRPQRFWLYLTGLNPKINTNDVKLIVERCLGTSLDLDPKLLVPKDTDCSRYRFVSYRIGLDPKLRDKALDGNNWPRNLGVREFEFFDTDSKNRSTPRVSPAExWWIETSATHHLYKVPATSSSRPWGA
>CR1-26_CQ_pol#LINE/CR1 395-4114 [Culex quinquefasciatus]
MGRISILGTPNPTDLGPPAVEVHPRRPGSQVRSDVGVSQPATTGKYSPLRTLQSLQRTPIFSLDNTRITSSEIPLTSSGAAVPSPSLSPVQSTRLPCESTSPGRAIESPMGASCPPDTATSSPIYHFGTFSARRCHQSRPGAGVGAEAEVSQMAHLGTYMSCSEHLPSPNNHPHSSAGFVSPERAHQHLAMEFQAAAAHLAVSTTPGRVYLSTMGDPGPPATVEPPCHRRLFSRPGPVCSEGNGVSQTASSGKYTSNESAVLSGSDLSLDSSTFPDAAAAVVQTEPVERRFLTVYYQNVRGLRTKTNETFLALCRCDYDVIVFTETWLTEAIKDAELTKNYKLFRCDRNPESSSLLRGGGVLIAAKAKLECKAVELLNCESLEQTVIRLTLPLQTLFVCCVYIRPVSDPATYATHAAAVQQVIDLSKESDSVLVVGDYNLPNLIWYHDDDTDSLLPVNASSEQEVTLVESMLPLGLTQVNDLPNAFGKLLDLVFVSDNVSVELFEPPCPLLKVDQHHNPLLMQLEYRTALNDNTVEPDAVFDFKRCDYTTLNERILAVDWLTFLDAPCVNSVTEMFYEKLFEIFNEVVPRKSVRICHRYKQPWWNDDLRLLRNRLRKATSRFLSTKTAWDKVVARNIEEEYLNLQQESFQNYINDLQSTVKSNPSKFWTYVNAKKQTEQTPLDVSYRDVNSSSPEESASFFADFFKSVYNTNSTVYPDSHLEGAPTSNISIPRPTLADDDILKVLSSVDPSKGPGPDGLPPVFVKSCANSLVVPVSVIFNKSLEHAIFPDIWKLASISPIHKSGNVSKVENYRPISILSCLAKVLEKVVYDRLFPAVRRIISANQHGFMRNRSTTTNLLSFVSPTINVLESGGQVDAVYIDFEKAFDKVPHTLTIKKLKKLGLPDWIVAWLHSYLTSRKAFVNLRVTRSDIFDIPSGVPQGSHLGPLIFILFVNELNTLTGSSTLMYADDLKLYRTVKSHVDCLALQADVDTLLHWCDRNGMTAHAKKCKVLSFSRSRNPIISDYSMNGQQLDRVETFKDLGVVVDSKLRFNQHIALTTAKAFAMLGFLKRSTKHFDDPYSLKSLFCSLVRSVLEYAVVVWAPFHETQVTRIERVQRAFVRYAFRKLRWNDPLRLPPYEQRCALFNLPTLARRRVFIQRLLVFDVLRDNIDCSSIRELVHFYVPARQGLRNNPPLLSVPRHRTVYGHHNPLDVCLRKFNDVHSCFDFIVSKNVFKSRISS
>CR1-27_BF_pol#LINE/CR1 236-3544  [Branchiostoma floridae]
MASSSIRRYSMDFLRSLSRVVPRIDPLTKESIRLNGLFKRSRPRGTKAGKHILREISTVLGHRPSSFQQSDTSFICKSTRHRYLSTVKTIRHDDPSLAAVSDNNRTKPFPMPKILLTNPRSLVNKLLKVIYLNARSVKAVNPHRNKLVQLQNLMHLNCPDILAITETWLNDDVRDQEVIPPGFVTYRKDRHHVHAGRAGGGVLLAVRSDVCSMRRSDLEPKDEILVCEVQPPGLGKLATVLCYRPPSGDLSTFTVNLSSVLEKVQSEYRMCCVLWDFNLPRVDWTSCAVTDKGKESDFCDVINDHFLLQHNTIPSNSSNNMLDLVFSNIPERVSDISELPSEFDTDHTILEFGIHCKLQSKRGLSRKVYNYSRADWDGLRSHLASRQLAEAVQQCQDIDSAWEFLSSMIRSAVDQFVPWRRVKDSTTPPWIDGEVRDIQNRKQTAWRRAKRTDSPAHWAKYRVLRNKLKNVLSRKHVGYLDSLSSTLQDAPKRFWTFVRAKSKSRTLPSVVYLEDSVAKSAGDKASLFNKYFFSTFSQVDQNVSAPTIDIKVIDSLCSLQFNVDSVRDVLSNLDTSKAVGPDSISPHVLKNCAQSIALPLTLLFNQSVSSGVVPSNWKEANVSPVFKKGDKQVVSNYRPVSLLSIVSKVMERCIYDIVFPILHDSIHGLQHGFIKGRSTTTQLLEVYHNVGSILDRGGQVDMLFLDFAKAFDSVPHSRLLHKLQMYGFNGKLLSWFNSYLTDRKQRVVVEGSHSEWLPVTSGVPQGSILGPMLFLLYINDLPSTAKNSIVALFADDSKCYREIRNLDDCHKLQADISSMYDWSLRWGMSFHPSKCKVLRLTRSKSPITFAYYMSDIALSTVSSMNDLGVLAQSDLLWNSHIVNIVKKANSMIGFIIRTVGFDSSLEVRKALYVSLVRSVLEYCCPVWSPLSRNHMYLLEGVQRRATKFILRANDNVNAGELDYRDRLLCLNMLPLSYRREIADIMLFVKSLANMNDLDLSNYVSFSARPTRSSRSFMLMPCRCKTSTFAMSYVPRLVTEWNKLDVTVRSIGAVSSHQSDLLSFKQLLVKSTVDRFRSHFVSDNLCTWSTACKCASCQDLRAR
>CR1-27_CQ_pol#LINE/CR1 2-2328 via tfasty with CR1-7_CQ_pol, 1 frameshift and 1 stopcodon. [Culex quinquefasciatus]
DTIVVVGDYNLPHLNWSFDSDINGYLPTNASAEQEIAFVESMLATGIQQIFNLPNCNRRLLDLLxHHVPESTESLTYDFTRCDFEAVNIALSQINWTGILAHCSLDEAVSRFYDALYDVIQLHTPLRRLHPPSNRKPWWNATLRNLRNRLRKARTRLHKRRCQPNIAEVRELEELYESQQNAAFSEYIHRIETDVKQNPRSFWTFLKSRKKGSGIPTEISNGCVEANSVEEQASLFADFFSGVYSTSLPAPCNEVVDHIPTHDLHLPVVHFSIEDVSRALDDVDVTKGPGPDSIHPSFLKNCAASLALPTTIIFNRSLAESTFPTAWKLASITPIHKAGNVHKVENYRGISILSGFAKLFEHLVHGALYPVLKPIIANEQHGFVKRRSTTSNLLLFTSTLLTNIEKGQQIDAVYVDLSKAFDKVPHALLLEKLRRYGLPEWIVRWIHSYLADRKAFVKVRCTSSHLLAIPSGVPQGSVIGPLLFILFVNDLCSVLESDKLMYADDLKVFRSVSSPLDSCALQQDIDRLLRWCTANGMEVNVQKCKIISFTRKRTPLLSSYRMGQNELERVNTIKDLGVTIDSKACFNEHIALTTAKAFATLGFLRRNAADFVDLFALKTIYCSLVRSQLEYAVQVWAPYYAVQAERIERIQRAFTRFAVRRLPWVRPQGLSSYDDNCERLKLPALASRRVLLQRIYVFDLLSCNIDCPTLRDKITLHIPARNLRNPAPFLEVPGHRTNYGYYSPLSACCRVFNDVADVFVFGMSKCVFKTRIKNRT
>CR1-28_HM_gag#LINE/CR1 181-840   [Hydra magnipapillata]
MVNAQEFNAYKAQQEQIIGDLKLQIEKLITDNMNLTKRVDDLEMNKSSTSHINNNVTWANMVKKSPEQMLMINSVTSETKERERRENNVVIFGIKPSENEEKSKEKEENRRAIINVFKKLQVTVNVQNFMKLKPRNTNNQAPFVVILKDKRERNSILKKAKELRDSKEYENVYINPDLTESERFKSKFLREECRKKNKENIENEFYYGIRNEKVTKIKK
>CR1-28_HM_pol#LINE/CR1 841-3858   [Hydra magnipapillata]
LYDLKDKNSNHCSYSHVNVLGNAVFKFKGGPTSIPSLEKSRNNNPHKNHIKLWYTNATSLNNKMQQLKAYLSCDKPDIILVSETWFNDKSVINIDGYNCYNKNRPLGENGGGVVIYAKSTFITTSVSHLALCDNGIEQIWCSLTNGPDHLLIGCIYRPPSSPESVNTKINSVLGIAKSLVDQKKYTGLIITGDFNYPHIKWYKDGGTKLKQNCDISIKFIDNLNENFIEQCIFGSTFQISDXEPTNTLDLLMTDNCKRIRDVEIGAPLGPIEKAHYVIQFKYDMQGADTIPIQFNSKDINYQKGDYEKINLGFNLINWYELFKDLNVDHCYSAFVQKYNELIELNIPKKRARFDQKVKKDPCITIEVKALIRKKKNLWNQLRAGKFKYLNKLNEYKAVKKLVKSKLKESTIDYEKNLINNAKKNPRLFYKYAKKNQKNIGKIQSMKNYANVLTSDRHEIVNILNKSFQSVFVKEHGEIPEFVPRITKPFEWDWKNVVTNEAVQQKLYSLDVNKACGSDGISPYVLKNCSSSAATPLALIYRKSIETGKIPSKWKEANITPIFKNGNTTDPLNYRPVSLTSVPGKVMEAFIKEAIMTHLMENKLLSKNQHGFVKNKACVTNLLETLDILTASMSDSLAVDMIYMDFAKAFDKVPHKRLLKKCEAYGIKGVINDWISSFLKERRQRVVMGVDVSPWLEIFSGVPQGSVLGPLLFLIFVNDLPSVINSNCKLYADDSKLIKVIKNVEDHESLQNDINEFVKWTDIWLTKLNIEKCKVMHLGKKNPRMSYCMNHDGKEYKLKTTVSERDLGVIISSDLKWHDQVTSATAKAQRTLGLIKRTFTYFDVEMVKSLYTTFVRPLLEFAIPAWQPYLQRDIDELEKVQRRATKLVPQLKKISYEKRLKAMGLTTLEKRRARGDLIQQYRFKQNIDQINWYKNPKPASSVTSSGPAFSVRGNKYRLEREYVPSCLPRYNFFTNRVCKNWNLLPNEIIEATSLNVFKARIDKHFS
>CR1-30_BF_pol#LINE/CR1 3-2171, fragment  [Branchiostoma floridae]
SEDLTRPEYFKYNKGDYQQMAQELDTDWEELLLGKSVEESWLLFADRVKGATEKCIPKATLKMKEGLPWRNRDLKSKLNKKQKAWKKYQESKKDKDYKSYTKARNQARWAARKAAKNYEKEMAYNIKGNPKLFWKYVNSKSKTRESIPELNDGNEIAKTDREKAETLNKFFVSTFTEERTGTIPQAKKQNVNALLSMVELSVEDIGKRLKEVNQNKTMGPDGIHPRILKELAEILAKPLYIIFNKSLEEGRLPNDWKVGHITPIFKKGSKKLPSNYRPVSLTSVTGKILESIIRDEIVDHMRAHSLFTENQHGFLPGRSTTTQILECLDDWTNWIEQGWPVDVIYLDFQKAFDSVPIERLLRKVESYGICGNLLQWVRSFLTERKQRVCVNGARSSWANVTSGVPQGSVLGPVLFTLFINDMPEVVQSKSKLFADDTKVYRSVCNIKDCEYLQKDLNSLQEWANKWQLRFHPSKCIVLRVGSKHPEFTYHMIDQSAAKVNLTFNKEEKDLGITIDQDLMFENHILSIASKANQMAGIMWRTFHHVDKEIFTLLYKSLIRPHIEYGGPIWSPSTWRLTDLLENVQRRATKRVPGLKDLSYEERLRALKLPTLLYRRLRGDLINTYKYVHGLYDTKPCLTEKIRDSRTRGHSLRLTRCASNNSRRQAFFSSRVVPWWNGLTEEVVTAPSVNSFKIRLDRLMENHPVVYNYRALDNPHKPNITVS
>CR1-30_HM_gag#LINE/CR1 185-865   [Hydra magnipapillata]
MPPKNSDINMLLQEMQEKIKQLEKKLDEKDVLIKNLEGRVNELENKLDQDKSKDLNNWSEVVKRKVKTNQGQNDIINTVLHEEKERNKRKNNIIIFGVKLANHDNIDKKKCDEDMVNNIFDSINADKDKIKKVIRLKTRDTSKIPPVIIELDNASDKISVLKAAYINRNKINEIYFNSDMTESERDLIKQLRSEVKLLNASLNQKDEYYYTIRNFKVVKLIKKPKQ
>CR1-30_HM_pol#LINE/CR1 899-3897 via tfasty with CR1-28_HM_pol, 1 frameshift.  [Hydra magnipapillata]
MAVLSTHNPVSNYVKSEVLLCKSIPKYHLCCRYTNATSLNNKFDLFLLEIAVYNPDIFIVTETWFNSSSAINVSGYNVFYNNRSKSNSTKSHGGGVAIYVKNKYIAYTPYDLASEEMTVEQVWCVIKTENENILIGSIYRPPDATELTNQKINKIINIAKKSVDCNKYSGLLLAGDLNYPNIKWNENDENIQTVLKNDRQAQIFLDNLNDNFLTQNVTKPTFNSGTLSEGNTLDLILTDAPERISIIGYNPPLSNLNNAHQILYWNYILKKPTTSKSSYGKSKFNYKAGNYQEMNNSFHSIRWSHIFSNKNVDECYKIFVNKYQELSDCYIPKKVHKHIALKPYIDKQIKTEIRHKTTLWNKLISNKSKSPILVQQYKIQSKLVKNMVRLKRIEYEKKISETSKRNPKLFYSYVNSNKKVKGGIASMSNEYNNIVTNRESIANILNNSFNSVCVNEDKHNIPNIPQKTEIILEVDINNKITCHTIEKKLKKLDVYKAIGVDGISPYVLNKCHSTLCEPLHLIYIKSLTEKKLPELWKLANITPIFKKGNTNIASNYRPISLTSIPCKVLESLIRDEIMDYLINNSLLNENQHGFRKNKSCTTNLLETLDIITDALENGHSVDMLYLDFEKAFDKVPHSRLITKLQSYGIVRNYLGWIENFLTNRKQRVVLGDTVSDWLPVISGVPQGSVLGPLLFLIFINDLPDQVKNPIKLYADDSKIINIIKNPNDSISLQNDINNIMAWSSIWLTKFNYEKCKVMHIGKKNPNATFIMTDIDCNYNYTLCNTKAERDLGIMVQSDLKWHSQVDSATSKANRMLGTIKRSFKYLDVNMVKMLYTTFIRPHLEFAVQAWSPFLKQDIDMTEIEKIQKRATKLAPTIRKLSYEARLNIMQLTSLEERRLRGDLIQQYKIQHGHDKINWVANDCGNALEEGPCLRQHKFKMRKPFSRNTFRYHFFQNRVVNAWNSLPSEIIEATSINNFKNKLDRAGFCRNYLLKHKQKTK
>CR1-31_BF_pol#LINE/CR1 102-3392  [Branchiostoma floridae]
MSRQRLVLLYLTMLLISKSYSPEPNPGPLLDQCPNHTCTNDSSSSQSHSSWACGTCDLRVSWNDRGIECEQCGQWFHGQCQSVDTQCYEQLADSNIHWYCAICGSPNSKTVFDLHGVDWTDSSLHDSTLDSCTTPTDLHFNPQHVSTPSKSSQQDKWKNRPLRVLNINFQSASAKRAELPYLLESLKPDIVLGTETWLDSTVATAEIFPDLYRVYRRDREGRGGGVLVAVRNNIDSYTAPELEVDECELTWVRIKLKGRKTLYVAAFYRPDVSDEDSLIRLRTSLQRTSQLQNALLLIGGDFNLPGWDWSTNTLKPKSPYPRLHQDFLDMLYDNGFEQLVNQPTRDCNTLDLFLTNCPDLIPRVEIIPGLSDHNIPYCEINTSFRGKCQIQRQIPLYARADWDSLRAVAEDLSTDLQVKKSSHSTDELWSTFKDTLLAAIKKFIPHKTARPKNNLPWITPSIRRLINKRDRKYRRMKKTGSAKLREEYKSLRRTIQRQIRRSYWSYLNSIFTEDSNTCQVNNKKFWSYIKNQRSSNTGVAPLKKNGRLTSNPQEQAVILNDHFQSVFGDGRQYSEEEFASKTGMTNIQTSEMDDITITCEGVKKLLKKLDPHKAGGPDGINSRVLRELAEELAPALTTIFQSSLSSCVVPDDWKCAYVTPLFKKGEQYNPANYRPISLTCISCKLMEHIVVGAVMQHLESNSILTENQHGFRKGRSCETQLLELTEEVINNLEGGKQTDLIVMDFAKAFDRVNHSLLTHKLRCYGIQGPTLAWITSFLQNRRQAVVVSGHYSPFVSVRSGVPQGSVLGPCLFLVYINDLPDKLSSMSRLFADDTAVYRIITSSQEQDQLQLDLHKLEQWENSWDMEFHPAKCVHLPITRSRKPFQRSYVLHGHTLETVSTVKYLGTTMSENATWDTHINTMVTKANKTLGFLRRNLKISSVRIKEKAYKAFVRPVLEYASSVWDPHTKKNIDKIEAVQRRAARFVLNKFHNTSSVSSMLSTLGWQSLKQRRKTARLGTLFKIHHGIVQCPVISSKLVPPPTRQRRKHNCQFKQITTRTLYRDGSFLPRTIKDWNGLPAETVEAATVDTFVSRASAS
>CR1-31_HM_gag#LINE/CR1 191-1081 via tfasty/estwise with CR1-22_HM_gag, 2 frameshifts.  [Hydra magnipapillata]
MSTPYTTDQLAALAANWPGLGQGNHSAASQKLDATISKLIATVSILLTRVSVLENENITLKAYHSQQPKLAPTNLTTTLNWASAVKHGSEANKAIITAVNENAKIVETKSKRAIVAGLPKSSDNNQRLISVQSMLQKKKAxYNVAFKVVGHFSAKTSLTKKFNTTTNTNQFNYNSSxPNELIIIEFDSNEHRNDLLSNAKRLASIDELKSVYIRPDRTPLEQETFNNLNKKLLPNTKNAELLAKDLLDKPFRFVIRSEKIKCIDTSKTVNINGRERNPYLKWKSAAEAIQSLSASY
>CR1-31_HM_pol#LINE/CR1 1008-4037   [Hydra magnipapillata]
MEERGTHTSNGNQQLRPFNRSQHLTSSTFLNKASSSIKLSNLLCFYTNATSLNPIKLIELSLLAENNSFDIIFITETWFNDQSTPSLPNYNLYRSDRLNQIGGGVAIYTNNKIISNQLQESLLHKNFICYYSEQLWVELKLLNETLLLGCIYRPPSSGIXAFSEISSAIFHAETSVLTKKYNGMIIAGDFNFPEITWTSNSVFSSSKIGLSSSFVSLLQDCHLHQIVTVPTFKPANRPMTNTLDLIICDSPYRANEINIGPPLGLSDQYHCSITWQYKLASTGKLSHFNSSKFIYNLGNYKKINKEFNKVDWSSIFKELNVEQCYQIWLNKYNECCLQFIPRMPNKPSPNKQPWMTKELLSLIRLKKSLWARNVSSKWKIASLVKEYRETRKFVKKLSCSSLKSFEFALANDKRNPKRLFSYINSKRSVINQISSMRITSSSEIISSDKIKIANSLNNQFQAVFSKEPSNGNLPHFDRRTNTILNNITFDTQATLMELSSLDISKSLGVDNVSPXVLRXCSTSMSTPLTLIFQKSFDNGEIPXSWSKANVTPLFKKGSRIDPSNYRPISLTSIPCKIMEKLVKKAIMXHLKXNTLLSNSQHGFXEKKACITNLLETMDFLTGNMARKLPVDVIFLDFAKAFDKVPHQRXLYKLKMYGIXGNLLNWIKAFLXNRSQRVILGDTQSNWLPVTSGVPQGSVLGPILFVIFINDLPDVISKENICKIYADDTKILSIVNSLAAQLQLQSDIDQIVHWTKSWLMELNIKKCKVMHFGQKNXIPFEYSMEETGSSSIXTRTKLETTTSERDLGIQITNDLKVETQSIIASCKANQMLGILKHTFQXRDASLWKQLYSTYVRPLLEFAIPAWNPHLVKDEQIIELIQHRATKIPXKLKXLDYKSRCLKLGLTSLIDRRKQGDLIQKYKIDKNIDIINWHFPXITIPPRANHRERXHREKYSNXLARFXFFNNRIVNAWNILPDKVINSPTVNSFKASLDRLQCYYSSQFSLMXXAI
>CR1-32_BF_pol#LINE/CR1 367-3150  [Branchiostoma floridae]
MFSIANDPPDLIVLTEVIPKAQVNPLRMCTIALDGYEIYTNFDPDELNLGPSGTRGIAIYFKKSLSLQVRVLDYGSVGFHEQLFLNFGLGNQVSLIVGCVYRSPSSEPVDSTTKLCNLLSRVCKENAKHVVITGDFNIKEIDWCSGMSTVGTGHHGQLLLDCLNDNFLTQHVMEPTRHRLNQQPSVLDLVITNEVMTIGNLQYAPGLGRGDHCCLTFSIDCVLDKTTESLPRRNFGKGNYGKAKEDLSKVDWDEMLGDLDVTGAWSQFCGIVEKVVDDCIPLTKPKQKPNKLYMNRQAMRARKKKSRAWSKWAKSGKVYDYVRYAKARNYLRSLTRQLCSSYERKLVKDLKSNPKVFWRYAKSRMSTRPKIASLVQPDGNIAESDYDKADVLNKYFASVFTNEDMANIPSMSTKPGVKTLDRIMTSQEIVRDKLANLNPAKSAGPDDLHPSLLKELADQLAYPLTQIFNKSLSVGKLPSNWKEAHVTPIHKKGSRTEPGNYRPVSLTSVVGKVLESIIRDILVDHFMVNNLFTDSQHGFVPKRSCTTQLLDVMNDWSLSLERGEPVDSVYLDFRKAFDSVPHQRLLVKLKAYGIDGTLLTWMRDFLHQRRQRVVINGSQSPWCEVTSGIPQGSVLGPTLFVVYINDLPDVITSTVKIFADDSKIYRPICSHADQVALQRDLCAVEHWSEIWQLPFNAGKCKILHLGSKNQRAKYTLGGHELEQTRVEKDLGLAVDDQLKFHVNTAAAALKGNQVLGLVKRAFTNLDESSVPILYKCMVRPHLEYANVVWGPHFSTDQKIIERVQHRATRLVPSLKGMPYSSRLRKLKLPTLKYRRERGDMIQLYKIMTKKERIDPESFFELANLDKTRGHCFKIKVPLARSNVRRQSFSARTVRLWNSLPEEVVTANSVNTFKTMLDKFWEHKRYKE
>CR1-33_HM_gag#LINE/CR1 211-1059   [Hydra magnipapillata]
MTKLTDQQKNCIALMINKAFEELKDDFQVKLNQQTKLFEVKLKEKDAEIAELSEKVKRLEENNANLPPSSSPAVCYSQIAKQLAKPGSELYNASIKVSKSHEILSSKKSKNVVIVGLPNSQKTIIEDRKTDDENMVNELIRSLNRRIIIKSTFRLKSKVPLVNNASEPLVVEFENEVARNEMLAAARELSTIEAYKKVYIRPDRTPDEQAEFAQLNKERKEANEDLQRNNNLDQPFRFVIRSGKLLCIDVTTTKDIGNRKVHPFVKESVAKQARRGSYQPIL
>CR1-33_HM_pol#LINE/CR1 1058-4054   [Hydra magnipapillata]
KSYQNLSNVKLPIYLKQNTSTNYKPIKFYYTNATSCNSNKLSELSTLALAYEIDVIAIAETWFKLDSIKIIDGYELYQADRDRIGGGVAIYVNKRLTNIEIVNVHLNNKEIEQVWCSINCNNFHLIVGCVYRPPNSTADYSKLILDSIRTASKLKSGKKYTDLIVVGDFNFPNIEWTDDGPIIHSNGNSIEHEFIKVLNDCSLYQIVNFPTFKQNDSVSAVNTLDLVLVCNPNCIDFLQCGPQLGHYEKGRYHYSITWQYFTSLSNNTVLTKDKFCFKKGNFFQMNKYLKQVNWVEHFYNKSACECYELFLHTYNESCRLFIPILNNKKKNSQPWLDAKVKKAIKIKHSMFYSNLHRQSQESRKAFNKMCANVKKQIKRSTREYEMDLVKRAKLAPKLLFSYVNRKQNIKTQIRAIKNKKDQVTTEISDISDILNRQFQSVFVNDNDQPIPEFLQRCENQCDCSKLSNMITYEKILKMLEGIDESKAMGFDEISPFVLKHAAEGFVDPIVHIFKLSFDTGCVPYHWSVANISPIYKGGSKLEPENYRPVSLTSVICKMFEKLIRDTILQHLVSNRLISEEQTGFVPNKSCTTNLIETIDTITFETAKGKPLCVIYLDFAKAFDKVEHKRLLTKIKAYGITGKIYNWIESFLANRKQRVAISNTVSEWVSVTSGVPQGSVLGPMLFLLFINDLPEVVLNTFKMYADDSKIIAIEDSIDKQAEIQTDLDNIVKWCNNWGMELNCKKCKVMRFGNQKVFRGIDKTYTMNINGMIYDLSNSVLERDLGVFVQPDMRWKHQTQVCVNKASKILGLLKNAFESRDCYMWKILYTTYVRPHLEFAAPAWSPPNVAEISMLERVQRRATKIPYSNRMLSYEKRLVKMDLINLNLRRKRGDLIHLYKILNNLEFVNLNVKPVYKSSIKLDGPCSSIRGLKHKIRMQCFTPREINDFHASVSSRIHFFTNRVCQIWNKLPEKVVDSENLNSFKASLDEWLKKNKKILI
>CR1-34_BF_pol#LINE/CR1 529-3369  [Branchiostoma floridae]
MYTNIDQLPNKRDDLTLAISTKKPDVIILTEAIPKAQRLPIGAARITIPGFTAHMNFDPDQGNLGTLGKRGIVIYTADYIDATEVSYSDIEFQEHLWVQVRLRGRDKLLIGGIYRSQSSDPKSSTEHLAQLLQVVTGTSPTHLVIAGDFNYPEIDWEQATSCANDAHPSHLFLRCVHKNLLYQHVFKPTRYRPGELPNILDLVLTNEDGMVENIEYLPGIGHSDHIRLQFETRLYSERKDNPTPRLSLYRGDYVNMAADLSGIDWDTRLMDKSFDEAYSDFISILQSSITSHIPLTSKKSCKKNLYSTPAVKSLSKKKRSSWDRYTVSGDEVDYARYAALRNDLRKLTRKLRYEFESNLVRDVKRNPKSFWKYVNSRLKTKSVIGDLKMADGTMTTSSKEKADTLNQFFCSVFTREETGRMPRMEAKYYGPNLEDITITPEGILKKLKKLKKDKSPGPDGLHPKILAEVAEAVARPLAILFRKSLDEGRLAEEWRLAHITAIHKKGPKNEPGNFRPISLTSVIVKLFESVIRDALADHMMVNELFCDQQHGFVPGRSCITQLITTMDLWTQAVEASEPLDAIYLDFQKAFDRVPHARLMHKLSQYGISGKLHGWIQAFLTDRRQRVCVDGELSEWAMVSSGIPQGSVLGPILFVIFINDMPSTIESACRLFADDTKVFRRVSSPEEVATLQADIDNLADWSKDWQLSFNITKCKRMHIGYGNPCQQYEMQGLTLEETTEERDLGVIVDQKLKFHAHCTTTAGKAFRTLGLIRKSFQRLDETTVPILYKTMVRPILEYGNVIWGPHFKGDQQLLDRVQHKATRLIPGFGELTYEDRLRRLRLPTLEHRRKRGDMIQLFKIVKGFDRIDPNRLFKFNVDGRTRGHSFKIVKPLAKKSARSNFFSVRVINAWNDLPADVVAADSVNIFKSKLDSYSNYWGGIEYTPSPT
>CR1-35_BF_pol#LINE/CR1 3-1229 fragment  [Branchiostoma floridae]
TDAQHGFVPKRSCTTQLLVVMNDWSQCLERGEPVDSIYLDFKKAFDSVPHKRLLVKLHSYGIRGHTLKWIQDFLSNRRQKVVINGAHSSWRNVKSGIPQGSVLGPTLFVVFINDLPEVVTSAVKIFADDSKIYRPILCKEDQEALQRDLQAVEKWSEVWQLPFNAGKCKVLHLGRGNQRAEYRLGGLILEETKVEKDLGVSVDEQLKFHVNTTVSAQKANQILGLVKRTFSNLDEVTVPLLYKSMVRPHLEYANAVWGPHFKVDQNTVEKVQRRATRLVPTLKSFPYSVRLESLKLPSLHYRRARGDMIQVFKFLTGRERVSAQSFFTESQHQSTRGHRFKLTVPLAKSLVRRQSFAVRVVQNWNSLPAEVVEAESVNAFKTRLDLCWSKKRYHDRQEGDYTGAAYFT
>CR1-36_BF_pol#LINE/CR1 217-3171  [Branchiostoma floridae]
MAMTLARIDKDYGIVIQFMLPFFVLFLICGDIHPNPGPQQNELIVRFTNIRGLRTNLTYLEHNLVASHPHIFCVSETFLSSKVYDELLVIPGYSVFRRDRPNDSGWGGLVVYCSEALTVARMPDFENHYYEYICLQVSLPGRKIFMFCVYRPPSDDDSLFDVLSENIDNIQELHPKSEIIVLGDLNSHHEDWLGSDKTDMHGECAYEFAILNNLQQLVDEPTRLGTDGKCSKLDLFLTTSPDNHAVTVSAPLGSSDHCVVTSVANYKLPTQSKPGRRKTWYYDKADWDGMRSYLADTNWSTLLKGKSADAAWTCVRDVISDTMDMFIPSKMTKHCFSDKPWFNEDCKLAVKQKQNAFKRWQNNRTMDFWTLYIKSKAECQRVVRRARAQFSLHLQQNLKHADNKQWWKLVKSVTDSNKTSSVPPLVSIGKTYSKAKDKAELLNKTFAANAHLNDAGKSPPVLPPKTDETISSLKFWPKTVLRKLRNLDTTKANGPDGISAKVLKKCGPELAPVLSKLFEISLDSQTVPSDWKAAQVIAVPKKGNKKDPSNYRPISLLPIISKVMESIICDHIRKHLDRHQLLCDSQYGFREKRSTIDMLSYITQWWNNALDTQKEIRVIALDIKKAFDRVWHRGLLSKLISFGIHGDLYGWISSFLADRCQSVVLDGFTSSSIPISAGVPQGSVLGPLLFLIFIDDLEQHLVNDLHLFADDSTLHVVIKSPGLRNTCALSLQQDLDSIEKWASDWCITFNAGKTEEMIISRKRDQTHPPLFFMNEELKPTQSITLLGVTITNTLTWTPFIKSLATKTARRLFILGRTRDLLPLQARITVYKAYIRPLMEYASPIWSGAGTTALKMLDRLQSKALRQLQIRVDPQNAGIFPLDHRRKVASLCTFYRHIFLQPSQELSGIMPTRATGTRVTRSSTRAHPYLVKVPRSNTQLHLSSYVPRTSRLWNSLPASVFPARPDMNIFKTAVNKFLLNYNSQS
>CR1-36_HM_gag#LINE/CR1 757-1677   [Hydra magnipapillata]
MSANELYETSSISPSLNPIDLLENWPGPGKGKAAYLPKRCDAMIRSLATTVKLLLEKVAALEKTNTNLQIQLTNCQPPAVYPSVSQPILKSFASQLTKPGSATNNAILNAVNINAKLQQSKAKRAIITGIPNAASTDASVVDQSVKDILQYVHYSASFKVVGRIPAAISNKNNKSPPNTSISTSSTVTAPTQPAPPSLIIEFPTNETRNGLLAIAKNLATNESYKSVFIRPDRTPSEQDLFNKLNNEKFKLNNGLKANGKLDQPFRFVIRSDRVKCIDVSKKVNINGLEKHPFINWKGALAAAQTNQ
>CR1-36_HM_pol#LINE/CR1 1676-4627   [Hydra magnipapillata]
NEKSQHSTHDRFHIIKNLSSPTSQSNASKLLLNCFYANATSLNPNKLTELELATSLYDYDTIFITETWFNESSAPAIPNYNLFRKDRSSRGGGVAIYVKNSIIANEIDYSQLHIGFQCNFSEQIWLELKLPQESLLIGCIYRPPTNNVLAFNEIVKAISYAKSAVENKKFNGLIITGDFNFPDVIWHDDWTNTTGAETSFGTKFAXTIFDLHLHQHVINPTFIQANGLFKNTLDLVITETTERLTHITIGPPLGSASQGHCTMTWQHQLAKNVCNSPRFNISKFIYRRGNYANLNEKLSQVDWVSLFKDRYADECYQIFCDNYIKLCDKFIPRVTSKPAKHRQPWLTSELFLLIKRKKKLWYLNRNSKWRIIPLVKEYNQTRNLVKKTSCTAIRAFEHKLASDKWNPKRLYAYVNNKRAVSNQITSMCSPAGEISSDHASIANILNSQFQSVFTIEPSDQQLPPFVKRTTALISSVIFSYDSVHKHLSALNANKSTGGDGISPFVLKACADAAATPLAIIFQKSMDQGVVPKAWLSANVTPLFKKGSRLDPENYRPISITSVPCKIMEKIVKEKIMQHLVAHKLIADCQHGFVNKKTCVTNLLEAMDFLTYNVSRKLPVDVLFLDFAKAFDKVPHRRLLQKLESYGIEGNVLNWIKAFLSNRSQRVILGNTSSTWVKVTSGVPQGSVLGPTLFIIFINDLPEHINSENLCKMYADDTKILSVVKTTEDKARLQSDIDSVVTWTRTWLMELNIKKCKVMHFSKYNVSPHIYLMNEYDANGSVTRTVIESSTSEKDLGVQISNDLKYERQAQIAAAKANKVLGTLKNTFISRDTKIWKKLYTTYIRPHLEFAVTAWCPHLEKDINVIERVQHRVTKVPHEIKRFDYETRCIKLGLTSLLNRRLRGDLIQKYKFENSIDSISWHIDPPNIPPSYGHRKRFHREMDNNCLVRYNSFNNRVAHPWNALPNVVVSATSVDRFKAKFDQL
>CR1-37_HM_gag#LINE/CR1 353-1099   [Hydra magnipapillata]
IFLNKTIGRKLGAGSHSQSTKDIHNWCSQLSHAFLELFERLQKLETTKIENDSNIQNLKTEIIKAANSSKSICDWSLIVKQGKQKKKPTEQLVATNVAINELEERKRRAKNVIIYGVAESANENIEMKSKDNDESKVKEIFKIIDQENVIPKFIRRLRSKTDKPGPILVELTEDFLRNKILGSAKKLRSNELHKNCYLSPDLTEAQRLQDFNLRTERNKMNQARTDNDPFWYGIRGNQIVKFKKKSNQ
>CR1-37_HM_pol#LINE/CR1 1032-4063 via tfasty with CR1-19_HM_pol, 1 frameshift and 2 stopcodons  [Hydra magnipapillata]
MIPFGMASVAIKSSNLKRNQINKFPQDLVSDGIEVEKLSCLYLNATSLDNKLNEFKVVIEQYKPNVVAVTETWFNNNSVVNVEGFHLYRKDRLDGRRGGGVCLYIDNLIDSYELNDAGLNLCKLEQVWAVVYFGKDKYLLGCIYRPNDFIDMSEFHVVFSRAREFIDKNKFKDFLIMGDFNFPSISWANGCVDVISNENGIEHKFSDILNENFFYQHINIPTFQLSDDQLINTLDLVFTTQSASVSLIDSKFVLGNIKRGHLIICFDFILADKAVSDYKSKQRFMFAKSKFDKISDLISNVDWIRCFSNKNVQEMFDELIYYTEVACNHFTPTKMTINSLKIRPAWVNASLKFLIRSKQNLRYKNCSCKWKDPVLKFEYKMICKKVEHEIKKVRQNFEYDLVKRAAKNPKLLYKLHNQCTTTTxSFCTATxTINKLLYSYINNQRAVRDSIKALKGTDGETTQNPKYVADILNKNFQAAFVREDDGPLPYFQIRTNETFIMTTEDFKYEDVFLRLKNLKENKSSGVDNLHSAILKNCASAFAIPLTYIFKESFETSKLPEQFRSANITPLYKKGEKTLAVNYRPISLTSIACKIMEGIMRCKLEIFLNEYKLIVKQQHGFVKSKSCTTNLLDTLDFISTSLENGKPVDVIFLIFVRTRAFDTVPHKRLLLKLAAYGISGLTIKWIEAFLKNRKQRVVLGENVSSWAEIISGVPQGSVIGPLLFVLFINDFPETLKNISMLYADDAKIMNEMISYKSTVSLQADLDRAFKWTQEWLVKFNISKCMVMHYGINNRKTPLYINKQKLNVTESERDLGVIFSNNLKWKNQVISCVGKANQMLGMIRKCFVRLDIRLLRSLYVSFIRPLLEFAVPVWSPNQKGEIDLLERVQHRATRLIPSLKKINYENRLKALDLTTLTNRRKRGDMIQLFKIFNGFNKLETKRKFNFQQTQTRGHRFKYVKEITKQAHRENFFFNRSANLWNSLPNDLVNSETVNSFKAGLDCWMSSSQANQLS
>CR1-38_BF_pol#LINE/CR1 2-973 fragment [Branchiostoma floridae]
VVDGERSTSAKVKSGVPQGTVLGPLLFLLYINDIDKNISSQLRLFADDCLIYHPIQTEQDQLDLQKDLDTLTEWSNTWQLKFNVKKCCIIHVHKSKRSPQFMYTMSAEPLEVSAHHPYLGIILSQDLKWSTHINSVTAKANSTLGFLRRNIRGATKEVRAKAYTSLVRPKLEYASTIWDPQKRQYANSNVLIDKIESVQKRAARFVFNDYRNTTSVSYLQNKLGWPTLQERRSQARLVLFYKAFHGLVSIPLHHYISRNTNPTRGHPLRFNTLSCRTEIYRNSYLPTTVSAWNKLPSHIVSAPTLASFKLGLVQQMGHPNSQM
>CR1-39_BF_pol#LINE/CR1 1-1326 fragment [Branchiostoma floridae]
ITPIHKKGARTQAGNYRPVSLTSVVGKTMEAIIRDALVEHMSAGNHFTDAQHGFVPGRSCMTQLLVVLEEWTQLLEKGEAIDAVYLDFRKAFDAVPHQRLLCKLGSYGVTGDLYNWVKDFLASRKQRVVLNGTSSSWTPVRSGIPQGSVLGPVLFVVYINDLPEAVSSTVRIFADDSKLYQGVKDNEGRVNLQKDLEALRDWSASWQLPFNVGKCKVLHMGNNNNRQIYTLGDQVLEETTAEKDLGVTVDNHLKFHTHTALAKNKGNQMLGLIKKSFANLDEQTMPILFKTMVRPHLEYGNVIWGPHYKTGKQELEKVQRRATKMVPSLRELPYSTRLQRLKLPTLEYRRLRGDMIQVFKMNGIDRIPVQSFFAPVEQSVTRGHSFKLQVPLAKTRARSQVFSVRTVSSWNALPESVVSAKSVNQFKSRLDKHWDCQKYVT
>CR1-39_HM_gag#LINE/CR1 156-1040   [Hydra magnipapillata]
MATAAMLPDLLDLDNFGELMTKLCAKAEIPLPDPNQKAAVLKQEHFAVAIKSMFKAFKAVFDKQEKQIIDLSERIKAIETKKPDNVVIPLFSNIVKSRKLNAQETNCLMAVSKFQSEKDHKANNIVLYGLKESIKSEEEHKKNDDYDLVCNLLSELQLPPNNNVSISRTYRIRPKQHHHHAQKKENLTNMDEEDETIETSVSTLKPAPLIVEIVNGNLIRKEILKLAKNLAKSKDFNNVFIQPDLTSAERSLRKELLTKRNNLNKEIPRENNRFTGTHYFGIRGTEVKKIKIVQ
>CR1-39_HM_pol#LINE/CR1 1041-4281 via tfasty with CR1-23_HM_pol, 1 frameshift.  [Hydra magnipapillata]
QFITTRFLYTPINPTIKTNTIKNNSRIHLSCCSSKEVPGNITLTQIIPSSIPNQQKLFSNELNSDEKIMPDRKLLKTKALKPKRPKPNRTLRSQYSQQHNKALLRDPTTIDFSDILYYWANNPCSLNKDKHNELVARLANIRDPSLLPHVIWFTETWFTNDSDTSIAGYQLHRKDRIGRGGGVAIYIKDSVVAEETNVVQLNSPEIEQIWRMIKIGEDVILIGCIYRPHDFNDDYFVSVLATILAAKNVLQKLGCSSMLLYGDFNLKETSYKSIEEGSAVATIAYVAHKHPTDLKFQECLNECHLTQLVTFPTYRQYRDAPFSSTLDLIISDKPDRSIEITRADHLGDTPGGQAHCMIHGLFALTGHNTTTTPMKKRFIWSKADYNSISTCISSIDWITTFNGSSVHENYKILVKNYNDAVNKFIPTTTSPFYKNQPLWITPEVLKTIKKKRKAWGKYIAAGRETHEALRVKHKLACKIVKKTINKAVTDHEEKLVKDSKSHPKNVHAYVRSKQEVKDPLHSIETDNGIITTDKNIICSTLNNYFQSVFETEPDGSMPTFPDRTQATCKINENWFTIEDIQSHLNNLEETKSIGVDGIHPRVLRNCAAAFAIPFNSIFRQSLLSGSVPEYWKKSNITPIFKKGSKLKAYNYRPVSLTSIPCKVMEKIIHKHIMAHCVENNLISKHQHGFIRKKGCLTNLLEARDILTEAMHQGYSADIIYTDFAKAFDKVPHKRLLHKLKAYGIHKKLLLWIKMWLKDRKQRVVLGEHVSEWKNVTSGVPQGSVLGPLLFILFINDLPDSIVHKIMLYADDSKIIGIIKSASDNTTLQADIDNAVTWSNTWLMHFNIDKCKVMHAGRPNKRLSHDYSMETADGMRHTIATTTIECDLGVLISNDLKVRAQVEKAASAANRMLGKLKNAFRSRNLNLWRTLYISYVRPHLEFAIQAWSPYLETDIKLLEDVQDRVTKTISSISHFDKIKRLQVLKLTTLKERRLRGDIIEQFKIFNNYDEVQFMVPQHQLIGREVYNLRGHDKQLDRQFVRGCEERSNFFTNRVAVHWNSLTQHAVNAPSLNAFKDRISMR
>CR1-40_BF_pol#LINE/CR1 1-2367 fragment [Branchiostoma floridae]
RDNYLYQYVTEPTRIRENQTPTLDDLVFTKEPDMVERICYEDPLGSSDHVKLTFRCNFCVNPTRRVTKSWSYDKANYNKMRTDIDIDWDKALSNKKTQEAFSIFQSILTHAVQDNVPSKLIDNSKKNFKPKWMTKKAFRASRKKFHAWTRYLNTKSSQDWAAYKSARNAATHEARRARKDFERRIAREAKTNNKAFWSYINSRRKVKSQVGDLKNTHGTYTSNDQEKAEILNDQYFNTFTREDLQNIPEFLQKPLTTPVLETITIEEEEVLEQLNSLRTDKSPGNDSLHPRILKELAHELTYPLTRIFQSSIDESTLPEEWREANISPLFKKGDKSDPANYRPVSLTSVPCKMLEKIISKRITEHMRTNNFTCDQQHGFSKGKSTVTNLLEALDVWTEALSHGLPVDVIFLDYAKAFDTVPHMRLLKKIESLGIKGALLGWIKNFLTCRRQRVSVNGVTSSWKPVTSGVPQGSVLGPLLFTIFISDIQIQLHNFVSLFADDTKIYAACYNCVSDNHSRCLQADLDTLHMWSVNMQMRFHPDKCKSMHMGKGNQGHKYSLADAEGVVHILKDTREEKDLGVLIDNKLSFSSHTQTQVTKANRVLGVIKHTFKYLDMETFLLLYKSLVRPHLEYATVIWSPKTKRDCDLVERVQRRATRIVESISHLPYSERLKALQLPTLLFRRQRADMIMMYKIAHGMVSLRTDSHCNICDRAMFIPSYATNTRGHPYKYQIQDARGPRTNFFPSRCTPTWNGLSVRTVTSSTVNTFKGRLKEEWKHHPNQFEYTFSY
>CR1-41_BF_pol#LINE/CR1 3-2435 fragment [Branchiostoma floridae]
LRESLNKIKPKGGQIWLGGDFNLPDIDWDNLTVKPNAQYGILSRGFIELVNDFGLTQVVKQPTRINNILDIFLTNSPSLIDNCSMLPGIGDHDGIPLVTANVNPTRSKQKPRITNLWNKADETAIKAELKDYSNSITNRNNSKFTVDELYDEFIDKIKSVMDKYVPTKTTKNKHTSPWINNKVRRLQKKKQRAYNSYRNNPNETTRNKYHSVRKLTKKTTRQTYRKYVNSICTDSPKKFWSHIKHLKNEETGIPSLKCNGKLESDNKTKADILNSQFSSVFTKEKDQLPNLPPSNTPAMPHLNITTNGITKLLKDLNPHKASGPDGIPARILKLAAEEIAPALTIICQKSLESGQIPYPWLQANITPIFKKGDKSDPSNYRPVSLTCVCSKIMEHIIHSQIMNHFDKHSILINNQHGFRKKRSCETQLILTTNDLATTLDTRSQTDMIITDFAKAFDKVPHNRLLMKLKNYGISDQLLKWITNFLTNRKQRVVVGGEHSEWSNVDSGVPQGTVLGPLLFLIYINDLADDLNSNIRLFADDCVIYREIKNDQDHSLLQEDINKLDKWQEDWQMKLHPDKCHVMRFTHKRKPKLYDYRLGNHILTETRNHKYLGVTLNNQLSWSNHINNITCKANKTLGFVKRNLYDCPKKIKQKAYSSLVRPHLEYACAAWDPYHKDHIAKLEAVQNRAARFVSNVPNCPNSQTSVSKLVSDLGWDTLKNRRTANRLTILQKSRYDLLALPVDHYLQLNPRQSRHNHPNSYKPIKTNKDCLKYSFFPRTATDWNTLPYSTTLQANPTKFKEEALQHLRNSQ
>CR1-42_BF_pol#LINE/CR1 1-1662 fragment [Branchiostoma floridae]
GETPLPDLIDTSSVPSISSVTFSVSTIEAILKNLEVTKATGPDDLPAMVLNKCAPQLAPSLKMLFELCLNTGKIPSMWKKANVIPVFKKGDKSSVSNYRPISLLCITSKVFERCIFNSVFPLVSNSLYPLQHGFVRGKSTATQLLEVYDEIGQVLDVSGQVDVIFLDFCKAFDTVSHVLLVHKLKLFGINGQLLSVISNYLKNRHQRTIVEGHQSKYLPVLSGVPQGSILGPFLFLLFINDLPDHVQTGRMAMFADDAKCFKRIDSIFDCIRFQADLDSLTNWSKTWKMKFHPSKCSVISVTRKPLPVTYCYHIDGTTLSRTATYEDLGLQVCQNLSWNIHVHRKVSKCNSLLGMIKRSVGYNAPLIVKLNLFRSLVIPHLDYCSQVWSPHTRFLLRKVEGVQRRATKYICNNYDLLYRDRLVTTKLLPLCYRRELFDILFLFKCFRGLYSIDIHRFVQVSLPHRQLRSTDPFQLVVRVCKTETFTFSYFSRIVLIWNTLPATIRQHMYSNLTIPSVRKLLVNHYTSRTDHTFSADNFCTWTSICRCSHCLLS
>CR1-43_BF_pol#LINE/CR1 3-1778 fragment [Branchiostoma floridae]
LFWKYVNSKSKTKESIPDLKDGSGVATTDKEKAETLNRFFISVFTKERTDTMPNAQEQEYLAELVDIEIQPADICKRLKALNQNKSMGPDAIHPRVLKELAEVLATPLSVIYTKSLKEGKLPRDWKLGHITPIFKKGSKKEPNNYRPVCLTSVAGKVLEGIVRDGIVKHMLSNQLFTKHQHGFLPGRSTTTQLLACLENWTCSLDNDLPIDAIYLDFQKAFDTVPIERLLVKVESYGIRGFLLQWIRSFLTDRKQRVHVNQACSEWAIVTSGVPQGSVLGPVLFLLFVNDMPHSVKSDLKLFADDTKVFRTVREAIDCEALQDDLDKLQSWAKTWQMKFHPNKCTVLRLGAGHPPFNYHMTDHHGGTVNLENTTEEKDLGIKVDRNLSFEAHILSIASKGNQMTGLLWRTFRYIDREVFITLFKSLVRPLVEYGAPIWSPGSWKLVDNIENIQRRATKRVPGLRDLTYEQRLRTLKLPTLLYRRLRGDLINTYKYIHGLYDTEPCIPEIKKDGRTRGHSLRLSRPLSNTNKRHDFFSNRVVPWWNALPEEVVTAPTVNSFKSRLDRAMENHPIMFNYRALDKPHKPTMTVC
>CR1-44_BF_pol#LINE/CR1 3-2111 fragment [Branchiostoma floridae]
DWTKELEGMTTQEAFNTLQEKVMKVVEENVPTKRTGNTTKKSKPKWMTHEAQRKARKKFHAWLRYLNTKSKEDWKTYKECRNAATHAARQARRDFERSLAKEAKTNNKAFWSYVNSRRSVKSQVGDLKDTKGNFATKDKDKAEILNDQYHKTFTRESYDNMPVFDPKPLQTPVLDKIEVTEEMVMDQLSQLRPDKSPGNDGLHPRILRELSHEIVVPLTKVYQLSLSNAVLPEQWTEASITPIFKKGEKSDPANYRPVSLTSVPCKMLERIISDKVIEHMRINNFTCEQQHGFSKGKSTVTNLLEALDVWTEALSHGLQVDVIFLDYAKAFDTVPHERLLRKVESFGIRGKLLEWVRGFLTQRRQRVSVNGATSSWKRVESGVPQGSVLGPLLFMIFVSDIPDTLQNFVSLFADDTKIYATVEDCAREGHTTCLQADLDQLQEWSRKMQMRFHPDKCKPMHLGKGNPGHKYTMIKTDGSVHTLQCTKEEKDLGVLIDSKLSFSSHVQNQVNKANKVLGAIRHTFKYLDIDSFVLLYKSLIRPHLEYATVIWDPKTKRDKDMVERVQRRATKLVPSISHLPYSQRLRALGLPTLLFRRKRADIILLYKITHGLVTCRTSNHCNLCSRAMLTPSLATSTRGHSYKYQIQCSKGPRANFYPARVIPMWNKLSEQTVTSKSVNLFKSRLSAEWNTHKDLYEYEFSY
>CR1-44_HM_gag#LINE/CR1 144-848   [Hydra magnipapillata]
MVNVRKGEFDTFKEETNKKILALEDLVKKLLSKNLDLEKQLKFLEDNQAQIISKNNQINSKPLFSSLFHNKSLEPEETRILTAISAENKEKSRREYNLILHGLDELNKSTEENIQHENEQIKKIFNYLKVDESFIKRHHRLKSKTDKPGIVIVELNNKEKVADILKSASNLKYNVEYKNKVYINQDLTFAQRESRKLLLKERDRLNNADNNQPFRYIVKNESIVKVKKSEKTKN
>CR1-44_HM_pol#LINE/CR1 847-3759   [Hydra magnipapillata]
NSLSSVNKNKSDIIFPFNKKSNYLKFWYTNSTSLVNKITEFETKIMIDSPDIILISETWFKNDLIINISNYNCFYNNRTNKQGGGVAIFTKYDIIAYEVSVSPLYKEVEQIWCSIVLHKTKILVGCIYRPPNSTDLINNAINELIKTAKKEVMNGKYSNVIIVGDFNYPNIIWNEDGTIELKQNCQTSRAFINNLQNNYLHQVVNKPTFQMAVDKPANILDLIICDDLDLIINIEYDAPLGQITKSHYILKWEINILNSYEKKFNNKRFNFRNGKYKEMNLMFYKVNWVEIFDKMNTNQCYEYFLKIYEKACKQYIPRHFKPTSSIKNPCINKKIKNLVRKKRSLWCRVRATNFKNTNLNNEYKLINKTIKKQIKKSTFDYEINLAKDVKHNPKRFYAYAQRKNQTHTKLLALKTSDNKIITDKKVIANLLNCSFQSVFVKENQDLPYFSNKTSHLFECDWDQELKEDIIFNYLLELNENKSLGCDNISPYVLKHCAEGLSKPLSLIFKKSIHSGELPELWKSANITPLFKKGDKKDPLNYRPISLTSIPSKIIEKIIRKKLIIYITENNLLTSQQHGFIQNKGCLTNLLETFDIITTEIENGYPVDILFLDFAKAFDKVPHYRLIHKISNYGIKGNILNWIDSFLKNRKQRVVMGEVVSDWCEVYSGVPQGSVLGPLLFLLYINDLPQCISSIAKLYADDTKIISVIKEHNDLTNMQNDIDLLTEWSNVWLMDFNINKCSVMHIGRKNINYNYTIKHDNQSFLLKTTTKELDLGVIVSSNMKWNHQVQVATSKAQRILCLIRKSFTYLNTEMVRQLYTSLVRPHLEFAAPVWSPSNKNNINDLEKIQRRATKLAPELKHLSYTERLTKLGLTTLETRRIRGDLIAFFKLTTGIDKILWYKEPNKASSQRLRGHPMKFEREFAKTTPRHNFFTNRVIPHWNALPEKVVSAMTVNSFKARLDKHLLTAVKV
>CR1-47_BF_pol#LINE/CR1 3-1385 fragment [Branchiostoma floridae]
PISLLSIASKVMERCLYNAVFPKLYDKIHSLQHGFVKGRSTTTQLLEVYHQIGSVLDKGGQVDMLFLDFSKAFDSVPHILLTHKLQMFGFGGELLQWLNSYLTNRRQRVVVEGSLSEWRPVTSGVPQGSILGPLLFLLYINDLPSSATNSTVALFADDSKCFKEIRNTDDCVKLQYDITSMYNWSTTWRLYFNLSKCKVLRLTRSRKPVMYSYDMNGTSLELVSRMPDLGVTAQFDLKWNDHVVNTTARANSMLGFVKRTVGYTTSVDSRKSLYITLVRSMLEYSSPVWCPGSRKLISLIEGVQRRASKYILGAGHEHPDYKSRLTSLGMLPLSYRREAADVLLFVKSIGNIYDSDIVKYVSFSSRGTRSFRANMATPFRSKTQQFATSYIPRLISIWNGLDGNLRAMGRYVSQSSHITTFKRQLLKYLHNRFTHLYNTDTPCTWTSFCSCSTCFATRAR
>CR1-47_HM_gag#LINE/CR1 146-1057   [Hydra magnipapillata]
MSSKVIDATDISFSXKYDFTGFGQGNTNLTKLDKAVFAAFQDMQLAIKLLNEKVIAQENTINELKIQVEKNQNKLESKTFSDALIGKSTESKQQRQQICSLISTVNKHTQSRELNVIVIGILENNTVEDSKQVMDFFGAVGLENVEIKHIRRLKSSKLKATSNNSNSNIIQVSLSNKIEKELVLNTCRHHTIKQYEKVFVHEDRTPAEQADFNAKRSQIVKQNQELKAAGLLDQPFRNVIHRRTGKIVCIDVIESTRSKQYVFKSATIALKSQRSNINSSNIEGNSTSATITISSTTPNNLKT
>CR1-47_HM_pol#LINE/CR1 927-4065 via tfasty with CR1-23_HM_pol, 1 frameshift.  [Hydra magnipapillata]
MFLNQQQSHSKANEVTSIVAILKETVHQLPSQFHLPHLTTSKPEIHLKSNNKRIRPIRLKLKSKPNLSQLSSKSSTSSSLISGQLCFWANNPCSLNNLKRGELIARISSKPMHEKPHIIFLAETWYNNTSDTFVKGYELHRADRESRGGGVAIYTRNDIITTEVRNKQLNSKAIEQVWCIIKFDGESLLLGCIYRPRDINDIVLTQTIESITGTAKQAMLTYNCSCMLLYGDFNLSHTWYESIEINGKVATVGHVIDECPRDLRFQSCLEDNNLTQLITFPTYRHSNLVEPSSTLDLIISDDPDRFIKVSEDDPLGFTKTGQSHCVIAGILAVHLKETAPKLSRPRLIWNRADYDAISTKIASNNWHTMFEGHTANDNFSLLVNIYKKYIKEHIPSTLVPPKIKNAPWVTPEVKAAVKEKHTLWLKYIAAGRHTHENLRNAHKVACKNVKKVVKEAILSYEDDLVYASKSNPKCLHLHIRSKQRVHEQIRSLQTMNNSTTTKKDEICALLNNYFQTVFAVEQEGSMPYFNLRTQTICQFDEDSIHEREVEKKLKGLSENKAMGYDKIHPRVLKKCATSFAIPITIIYKKSISTGDVPDLWKKSNITPIFKKGSKLQPSNYRPISLTSIVCKVMESLIHDCIMKFCTKHNLISKAQHGFVPKRGCVTNLLEAHDILTQSMHLGFPADVIYTDFAKAFDKVPHRRLLHKLRAYGISETLLKWVKNWLTSRQQRVVLDGITSEWVPMTSGVPQGSVLGPLLFVLFINDLPDTIVHHTKLYADDGKIIGVIKSLQDANLLQADIDKIVDWSHKWLMPFNINKCRVMHVGRTNKSTHSYTMAQLDGTRCTLEETIVERDLGVIVSNDLKVKTQVETAVSIANQMFNRLRKAFCSRRLVLWKTLYLAYIRPHLDFAVQVWSPHLKKDIVMMEKVQRRVTKTISEIKHLPYEERLQKLKLTSLEDRRKRGDLIQQFKFTQQIDEVNFHFPLTLINSKTSYNLRGHNQRLMPQPVKGCIERENFFTNRVTKQWNALSQQAVDSPSVHFFKKFLL
>CR1-48_BF_pol#LINE/CR1 1-1827 fragment [Branchiostoma floridae]
IVLTNPKRFWSFFHSKTKSKSLPDKMKLQDEYAETAQEKAELFNSFFYSVFNCTDGETPLPDLIDTSSVPKISSVTFSVSTIEAILKNLEVTKATGPDDLPAMVLNKCAAQLAPSLEKLFQLCVSNAKIPSMWKKANITPVFKKGDKSAVSNYRPVSLLCITSKVFERCIFNSLYPLLSNTLYPLQHGFVKGKSTTTQLLEVYDEIGEVLDKSGQVDVIFLDFCKAFDSVSHKLLVHKLKSFGFSGQLLALFNDYLSERFQRTVIEGEMSDYLPVLSGVPQGSILGPFLFLLFVNDLPDCVEFGKMAMFADDAKCFRRITSIFDCFKFQSDLDRLVAWGKTWEMAFHPSKCSVVSMTRKTSPVEYPYSMSDSVLSRQDSYNDLGVHVQHNLSWNSHVLKKISTCNSRLAMIKRSVGFNAPFTVKLNLYRSLVIPHLDYCSQVWAPHTRLYLRKVEGVQRRATKYICNDYELNYNDRLTHTNLLPLCYRRELFDILFLFKCFRNVYCTNISHVLNVSRPTRSLRSTDQFQLVPRPCKTESFSFSYCSRIAVIWNNLPLDIRQHMYSNLTLQSVKKLLISYYRSRFSDTFTVDNLCTWTTTCRCSSCIVT
>CR1-49_BF_pol#LINE/CR1 3-1496 fragment [Branchiostoma floridae]
VVLRRCAHELAPQLTALFNQSLRLGWVPTQWKDANVCPVLKKGRKEFVENYRPISLLSIVSKVMERCMFNRIFPYLKEQIHPFQHGFIKGRSTATLLLQIYHKIGSILDNGGQVDVVLLDFSKAFDCVSHRLLVHKLKMYGVHSNLLAWFKSYLSCRRQRVIVENVHSDWLPVVSGVPQGSILGPLLFLLFINDLPYVVSNTMALYADDSKCFKQISTVIDCVSLQKDIENMYNWGNTWMMKFNTDKCKILTIGRGKNQIQFQYKMEDRFLEVVSEFNDLGVSASGQLTWKFHIQNIISKANSTLGFIKRSVGFHAPLSVKKALYMSLVRRKLEYCSTVWSPHTHELIERLESVQRRGTKFILNNYQTDYTYKDRLLSCSLLPLSYRREILDLVFIFKCFLGYYEIDVNNYLTFPHPLLRSHDQAKLTPGKCNTTTFMYSFFLRIAHIWNSLPTEIRQLRLIPDSSIRRFKQDISGHYLSLLSTHFDAHKTCTWTTC
>CR1-49_HM_gag#LINE/CR1 767-1447   [Hydra magnipapillata]
MPPKADNSELNNKYETLLKQVEALSKTVVEQTSTIIALTKRIQQLEEKPIASSTTTETWNFVVGKKSTKTPAQLDMLNCVANENKDRMKRDKNLIVFGIPASTKKEPNEKQVDDENKIKELLTNVKINSDNIIKCFRLRSKDPNKPPPIIVETTDTVTRNNIVKAARRKFEGIYVNPDLTEAQRRQDRQLRDELKKKNEPLNLKNNWAKTSHYYVIRNNAVVKVDK
>CR1-49_HM_pol#LINE/CR1 1448-4424 via tfasty with CR1-62_HM_pol, 1 frameshift.  [Hydra magnipapillata]
QSTVSNLKPYNDNLNINEISLERKSFSTISLLQQSAFHKIPCCYTNATSLNNKMPEFLASIETYNPKIIFVTETWWHESSITNIENYMLFRKDRVSSRGGGVAIYVDTSLKPNEVSEIVLLDSPEQIWCEISYGSEHILLGCIYRPHTLDPLENIEASIIKANELLSKIYSGLLICGDFNLPGINWDLSSIPTVSNTDILSSNFIDILAESFLIQFVTKPTFQLDEITSNNTLDLIIAENENRVLDIIHHAPLTSLKKSHHVLQWDYVVKSAAVVGKHIEKRVYHKSNFVKISEYFNNINWQMEFNGHNTDDCYNIFLNHYEAACKNYVPVTNLKWIRRRSEWMNDDIKNKIKAKNKLWFRCRANGYKNLKLVNEYKACNIQLKKLIYKARCEFELDLAIKSKHNPKILFKYVNSKQNVRTTITALKGINGDTITNPIEIANRLNNHFQSVFNKNEDDELPYFIKRTEAICKYSQITLDLVKNKLSNLSVDKTVGLDGVSAYVLKNCSDSFSIPLSAIFQKSLDSGCCPKVWKKANVTPLFKNGSRLDPGNYRPISLTSVVCKVMEKILRDTMVNHLVEHSLISKNQHGFVNKKACVTNLLESIDMMSKALSDKISMDVAFIDFSKAFDMVPHKRLIYKLEAYGFTGNLLNWIKSFLHQRFQRIVMGDYVSSWLEVFSGVPQGSVLGPILFIIFVNDISDIVNHPCKMYADDTKLLARLDHPLASQMLQTDIYNIADWCNTWKMKLNLDKCKIMHIGKKNNFYVYSMPANNNNSVELASTLVERDLGIMITPDLKWHNNSTFATNKANRVLGMLYRTFSHMTPQLLKILYTTFVRPHLEFAVAASNPSSRIDIDKIEKVQRRATRLVPSYRHMSYKDRLNILNLTSLETRRIRGDLIQAYKIINNIDIVSWSEPHVLRVGQSNKIKTRGHHLKMTREYVKNCEQRHQFFTNRIVNHWNALPSEVVCASSVNSFKAKLDAEISNNPHKYRDYN
>CR1-50_BF_pol#LINE/CR1 3-1472 fragment [Branchiostoma floridae]
DFFASVFTEEDLSNIPTINNLHDTQLLEGLEITEEVVLKKLAELNPAKSAGSDNLHPRFLKELAHDLATPLTILFKKSIASSELPEGWKQAHVTPIHKKGSKSSPGNYRPVSLTSVVGKMLESIIRDKVVEHMSSHNYFTDAQHGFVPGRSCMTQLLVTMEQWTKLLQAGDPVDVIYLDFRKAFDTVPHTRLLQKLERYGVVGDLPEAISSEVKIFADDSKIFRPVKHKRDQEALQQDLVAVDQWSQHWQLRFNVSKCKVLHLGRTNQKITYTLGGQNIEETVEEKDLGVSIDNNLAFHMHTAKAANKGNMMLGLINRAFYNIDEQTIPILFKTMVRPHLEYGNIIWGPHFSLDKQRLERVQRRATKMVPALKDIPYKDRLKKLRLPSLEYRRRRGDMIQVFKIMAGKERLQSDLFFVEAKGSSTRGHSYKLKIPLAKTRIRGHVFSSRVVKDWNSLPERIVMSESVNQFKSNLDRHWEHLWYVHEGCV
>CR1-50_HM_gag#LINE/CR1 114-890   [Hydra magnipapillata]
MEMENNFLNQVNWPSFGQGNHSPASKLLHEWCGKISKYVLELSKKVKDLEDKEQNNLKIIDSLKDDLSKSKQNVNSANIGNEWVQIVTKGSKSGKKPPEQLVVANATINELHDRERRKRNLIVFGIPESTQTDLLIKRNEDEKKITDVFDFIGKAEVKPVYTRRLRSKDKTKPGPILVELDEPSIRNPVLLAAKKLRNSMDHKQIYISPDLTEAERQLDLQLRQERNRLNANLDTNSPFRYGIRGNQLQKFKKNQNST
>CR1-50_HM_pol#LINE/CR1 889-3764 via tfasty with CR1-19_HM_pol, 1 frameshift and 2 stopcodons  [Hydra magnipapillata]
KAPLLPESITELNCIYLNATSLENKLDELNVVTSLHCPKIVGVSETWFKNNSIVNIPGYNIYRYDRIGDRRGGGVCLYIKNSIDSYELVDTDFSISKIEQVWAVVYFGQDKYLVGCLYRPNYVVDMVDLDNIFKIARRYVDVNAFKDVLIMGDFNFPAIKWSNGSIASISNESGIEHKFYKTLSDTFLYQHINIPTFQLTNGLPSNVLDLIFTTESGSVCAVDPGFVLGDINKGHLIIYFKFVLKNNVKRLACSNFKFLYSKAKFDKISDFMSNIEWVKLYENKTVQDMYDELIYYTTEACNLFVPTIDISQIKSSTTPWINNEIKQLIRRKRNLRYINCSHRWNDVKLIKEYKQLCKLLKTEIYNARVLFEKNLVLRSKLNPKLLYKYLNSTNSIKDPIKAIRMPNGDLSHEPNKIVNCLNKHFQDVFTIEEKGDLPPFHLELNDVYKFEDIEPDDISFELVLSKLNSLKDNKSPGPDKLCSIVLKNCAISFTLPLTLIFRESLKTSQLPIQFKSANVTPIHKKGDKTVASNYRPISLTSIPCKILESILRERIKKHLYKNNLLTIQQHGFVKGKSCTTNLLETPDFISSCNSNGLPVDVVMLDFAKAFNSVPHKRLFAKLNAYGINGLALKWMEAFLNNRRQRIVLGEFVSEWVEIFSGVPQGSVIGPLMFIIYINDLPSKLINKTKLFADDTRYCPRxLxTSDTSSLQRDLDVSFKWTEDWLLKFNVDKCVVMHYGVNNKKNPLYINGIKLPESNSVKDLGVIFSKNLKWKDQVMSVTNNANNMLGRIKKSFARLDCYLLKSLYVTFIRPFLEFSVPVWSPYQKGDCKVIEQVQRRATKLIKSIRCFSYEDRLKVLKLTTLTKRRERGDMIQLFKIMNNVNITEHNLQTIQNHARGHCFKYYRETTKNLLRHNFFYNRSANLWNSLPLELVNSSSVNSFKAGFDCWTNNNLSIHLY
>CR1-53_HM_gag#LINE/CR1 118-780   [Hydra magnipapillata]
MVRKEDFEALVSRVLKLEAELQIKDKEINDLKIVVNDMKNQSKLVSNSNDVSNTWSDVVKGRKKNTSVQLDLLNVVVKESHDREIRQKNLVVFGFKTSTNKDESVAKEDDKQELQNLFKQINVKVTIQRVFKLNTKTDKPPPVIVVLTNKEERNAVLKTAKNLRNSPETNNIFINADMTEAERFKMKALREERAKLNEANQDLKYYYGIRNERVVKLLKK
>CR1-53_HM_pol#LINE/CR1 781-3741   [Hydra magnipapillata]
LYESTQPYQQISPKKVLYXNLNNITKNPNDRHLLNSNKRLIVYYTNSTSLNNKKNDFRALIDIEKPDVFAVTETWYTPLSDVNIEGYVIYRNDRLNGKKGGGVCIYVNSSIKSYEISNIELKSDLIEQIWTWIEYGQEKVLLGCIYRPPDSSCVTNKNIINSIIAAKRAQDKKQFTSIIITGDFNYNTLKWKDSVEESHSQQAEDFVACLNDCFFEQCVTEATFQSNENELTNILDLVIVDDSNRIFGLSHLPPLGLSSKGHHILKWFYKMKDRIDDFSSSTKKFAYRRGNYEKINVYIKSINWADEFQNKCIDKCYDKFLYHYNQSCKNYIPIVKLKNKASEVWMSNSLRKEIKYKNNYWTTNKKMNWSIAGSKEKYNKMKRNILKQINNSVKNYERNLVNQVKNEPKLLYSYIRKKQKVKNHIRALNDNIGSTMYDKHSIVDIFNKYFHSVYIKEENINDCNFEVQTNSRFGKIFVDQALVKSYLSKLDINKSSGYDEVNPYVLKVCSESFSIPLSIIYQQSLTNSDIPDLWKMANVSPIFKNGSKLQAINYRPVSLTSIPCKVLEKIISDNLKNYLESNNLFCKQQHGFLKGKNCITNLLESLDFLTYQLMIGNSIDILYTDFQKAFDRVPHKRLISKLCGYGIEKEMLNWIETYLSNRKQRVIIGDTKSDWLEVLSGVPQGSVLGPLLFLLYINDLPSKIKNKCELYADDNKIIAVVNNQVDSKSLQDDINNLTEWSDKWMINFNIKKCKIMHFGKHNKNFEYFIKDSKLDSTTNEKDIGLLISNTMKWNQHVNMVVNKANSRLGLLSKSFTYKDKNTMKILYCTFVRPILEYASPIWNPYNKNDIHKLEIVQQRATKLIPELRHLPYEERLKKLQLTSLKIRRLRYDLIQYYKIFHNLDKVCWYQQPKTAISISANGPASNIRGHKARVDIELIKRNRPRENFFTNRVAKWWNKLPEEIISAKSVNIFKDKLDKHMVIMKL
>CR1-55_HM_gag#LINE/CR1 92-748   [Hydra magnipapillata]
MVRKEDFEALVSRVLKLEAELLTKDKEITQLKILVNDLKNQPSNVLNSSACAWSDVVKGKKSNKAAQLDLVNVVVKESQDRDLRQKNLIVFGFNTSKNKNDDVAREEDILGIQNIFNQINAKATIQRVFKLSIKSDKPPPVIVVLTNKEERNAVLKTAKTLRNLPETNNIFINADLTVAERLKMKALREERAKLNETNKDLQYYYGIRNERVVKLIKR
>CR1-55_HM_pol#LINE/CR1 749-3706   [Hydra magnipapillata]
QFISSQQDQLLFSKNLLFKNSNKFIEKNNKRQLINLKNQELFNHPKNNYCGKWALTNIRSLGNKIADFQHFVHLHSLDICCVIETWLNKNLPDSLLCPRFYTVLRCDRSSKGGGIAIFFRSFIQFTKVDIPPEFHELEIVCADLNLNGQSFRVIGYYRSGGFGKVAIDYMQSSVKCFSILCSTKKNVVILGDFNLPDIDWHYYHGPDSVIHNSFLHFINRYSLTQHVDQPTRENSILDLILSSSSSFISNLCIEPPIGTSDHNVIIFTPNLSCLYNKTEVPVQQFFCWKNADYQVINKYLKSVDWSIIFQTCFNIEACWHTFSTILNNIITQHXPKVRVCEEHKLSHKIHYPYYVKRLINNKAMAWKRSKVTGKSNDKAAYKSIAAQCSDSIRKYHAAKELKMIRKDNLGSFFNFVNGKLKTCSKLNDIRRSDNTLCHDKEEISCIFNNFFASVFTVDNGLSPKFTDRVNVHSTCLSSINFSPSTVEKALRALKPTTSTGLDGIPNVFLKNCANSLSIPLSHLFDTSFKDGAIPLDWKVASVIPIHKKGPTVDPGNYRPISLTSTCCRVMERIINNKLINYLLLNNLITKEQHGFIRKRSTCTNILESLHDWTLNLQRRIPTDIIYFDFKKAFDSVSHPKLLMKLPAYGIVGNLLNWLTNFLHMRSQVVNLNNVTSHAISVTSGVPQGSVLGPTLFLLFINDVSHINKQLDVKLKLFADDIKLYSVYDVRGLQSDLHTAVNXLYEWSCTWQLQIATEKSFVCTIANQSQNIAQRVYTINNHELAHVNCIRDLGVTIDRNLKFNQHINLIVHKAMSRAFLILKSFYSRDRLLMVKAYCTYVRPMLEYCSSVWSPYTICLINKVEKVQRFFTKRIAGLWSVSYDKRLAILKLNTLEYRRVFKDLVLCYKILNGKLDTDLSNILILNSYLNNRGHNFKLYKHHCSLNSTKCFFSNRIVNVWNSLSEDVVSASSVLMFKKRLAVLLCSS
>CR1-60_HM_gag#LINE/CR1 101-826   [Hydra magnipapillata]
MAPKVDYVSRKQLEDLITRVSELERKDIENLSKIDKLMSENVLLTARVKILEEKQTNSILDWSKLFNNKKCDKSTEEIKVTQGIIDLSKDVSKRDKNIIVFGIPNSTDSDAGNRKTFDENILKNLFSEIKINPDKIRRIHRFKNTNENNTKMETSTPLLVELPDSSDKFAILKAAKQLKDSESFKKVSIQPDQNELERKFTKSLILKRNKLNEELNLKGQLNNPFRFGIRNNEVKKIRTN
>CR1-60_HM_pol#LINE/CR1 798-3947 via estwise with CR1-64_HM_pol, 2 frameshifts.  [Hydra magnipapillata]
MKSKKSEQISQKINQKDKNNLNQHMNSNDNISVCQPYDSLNIKTMLADSNINSKEVHLSRNFLPNNDLTQVNSVFNINSKKMLNINPKKPRNSIKCWYTNATSLNNKYNELIAEVEINNPDVMFICETWWNDCSPKSIQGYSLFERERTYGKGGGVCIYVKDSIKSFEVSNSVLQSQQIEQIWCNIEVGNESILCGCIYRPGISDIQNCIKITASIKVAYEMISNKTYSGILLNGDFNLAKIDWSEEFFAHLQEPNEIASMFIDCLDDCYLFQNINKPTFQVDDITETNVLDLVITENNLRIYKLEHHPPLGSIKHGHHVLTYNYNYSSSEEILxSLTKKNNIYNKGNYDEINKYFDSTDWSRIFENLNANECYEKWLEHYKIICNVNIPLTKSNKKKRAPWFNKSLSEMIKAMIKAKKVLWIKCRNAKFRDQELEAKYKSIKNTTKKAIKNEIVKYEHTIAKNAKKNPKIVYQYMNNKTQTKDYIRAIENNNGIVTTNLSEIANELNNFFSSVFTIEDKNLPEFPKQCDVLCPNPTFDIETVSKKLATLNVYKSTGVDTIHPRVLKECCKSISKPLSIIFDRSFSSGIVPCLWLCANITPLFKKGDKLKVKNYRPVSLTSIVCKVYEESIIRDTLMNHLTKNSILSDSQHGFVSSKSCCTNLLETFDIITQALEENLSVDIAFLDFAKAFDSVAHKRLLLKLQSYGIQEQLLCWFKSFLSRRTQRVVLGEITSEWKKVISGVPQGSVIGPLLFVIYINxNDLTSEITNHCKLYADDTKIISVINTVEDSRTLQQDLCKLVEWSEKWQINFNKEKCKIMHIGKRNLKYNYLMCSTFDIIQQNALVMEETTLESDLGVIISNDVKWEKHINTIAARANRKLGQIKKSFCRLDEISMKHLYTSLVRPHLEFAVPVWNPYYQKDIDKIEKIQRRATRINSLRSFCYEDRLKKFNLTTLKTRRERGDLIQFYKISKNMDKVKWNHPPKIIKYAITRGHTQKIQKQFTHSTTRFNFLTNRIVNNWNNLTEEIINSKNVNIFKNKFDRFEKNKIKK
>CR1-62_HM_gag#LINE/CR1 80-769   [Hydra magnipapillata]
MPPKKEEEKKLDDLLERIKQLELKLNFKEERIKNLEERIIKLEEENTSNKNNPCIIDDKAWNVVASKNSVKTPLQIDIINTVAIETAERARRENNVIVFGLNHSAKSDLNERKEDDKIEVLKVIKDINLESVQIKRITRLRSRDMSQKSPVILELDNVHARNQVLKAAFRNRDKIPNIYFNTDMTEAERILTKQLRSEVKILNGNSDMNNSSFYYGIRSNKVVKLTKKT
>CR1-62_HM_pol#LINE/CR1 770-3796   [Hydra magnipapillata]
QFEYKVANKISNILMFKRTVTGIQDFKIKINDNAQKPVISTGYNSNSLKCLYTNATSFEKNKLNEVIAEIEISSPDIIFITETWWNDTSATIIPGYNLYRRDRMNSRGGGVCIYVNDLIDSFEVNNEPYNNKNIEQIWCTIKMSNECILCGCIYRPGSDDLVNFQNVINSIKESYNYFSKTKIYTEVLICGDFNFPSLNSIWNSXYESVCIGEKERQFLECIEECYLTQHVKKPTFQLNDTKLTNILDLVFTASPFRISSLVHMDPLGKTKRGHHVLNFNFNYQLHNRKNESITTKRVYMKGNYHEFSKYLNKFNWSHEFTGLNVDQCYESFIRTIEYGCKDFIPSFNQKTTESKRSLWMNKELKHEIRLKRNLWYRYKASHFKNLDLKEEYKLKNKLVKKLVKITIQKYENKIATESKKNPKQVYAYINSKLKAKDHIRAISIENNEISTDSQVIANQLNRFFNSVFINESLTNMPTCENITEKICPTPLFNEKDIKKRLLNLNVHKSPGIDRIHPMFLSKCADSLARPLCMIFNQSFLTGTLPTSWLKANITPIFKNGDRLNAGNYRPISLTSVVCKVMESIVKDTIMNHLNKNKLLIPEQHGFIKSKNCVTNLLETLDIITEAINCGKCVDVAFLDFSKAFDSVPHSRLLLKLKSFGIVGKLLQWCKAFLANRKQRVVLGLFESEWETVRSGVPQGSVLGPLLFIIYINDLTKKLNNKAKLYADDLKIIAVLEKNKINNSLQFDLDILFNWTKRWLISFNKDKCKIMHFGRDNPKIKYNLKYNATETEIIQHGLIVTSLERDLGVYISDNLKWEDHIEKMVSKANQKLGMLKHAILYPDETSTKLLYMSLVRPHLEYAFQVWNPYFIKDINLIEKIQQKATKFGYKKKKDSYEQRLEKMDLQNLSNRREKGDLIQMYKFMNKIDTINWHREPEVLGRLTRGHNQRLRRQYVQNFLPRHHFFTNRIVENWNRLDSEVVNANSVIDFKNKLKKFSEKQLLKSNIYSC
>CR1-64_HM_gag#LINE/CR1 278-985   [Hydra magnipapillata]
MVNAKEFKDALDALESKLRIEYESKISNAVADLKKTIQSLVLTVADLTKKNEDLNNKVVNVIVPAPNEAWNIVTGRKLNKTQSQIDIINTVSNENKEIERREKNVIIFGLEESNKTDGADIKKDDENKVLDLLDQVSIDKLHMVRIFRLKSKNGIAPVIVELRNKDTRNDFIKKSYRKFNGIYVNPDLTDAQRNLDKQLRDKCRELNKPLNLKVDWDQVKSYHVIRNKQVVLINK
>CR1-64_HM_pol#LINE/CR1 986-4033   [Hydra magnipapillata]
QLLFKSSQYNTHNFKHSLHTPCQYXYNQLNNPDADTGGSNHLNSSANTLLVKKMNQDLQKGLKTENIDYLTCWYTNATSLNNKFDEFIDDISRSKAQVIFACETWWSAMSTTNIPGYNLFRKDRQFSRGGGVCIYIQENIKSYEINEKYLINENIEQVWCLIEIGKEQILCGCMYRTGLSNSEKCIDIIKSLKQAYVLKQNNKCSGILICGDFNYANIKWNDESFSEIINDSDTTASMFIESLHDCYLHQNVISPSFQVKFGIDTNILDLILTDNSNRVYFLEHFPPLGGIDHGHHILKFRFGYENKPNLLISLQTRKKKFLWKNGNYKALDLYFNNINWINEFEGLSVNECYEKWLRKYEIGCEKYIPTLNLDKNSFQLKNNSLWMTSELKSMCKEKKKCWFRNRNSGFKSLLEVNKYKKLNKDIKKLVKKSIRNFEKNLALNSKSNPKSVYAYINNKTRFKDSIKAIKLHNGIITTDNQEIVNTLNEFFASVFIQDDSPEEVLDDNLLTKCSDPDFSISIIQKHLSNLNMYKSVGPDNVHPKVLKECSESLSSSLAIIFVKSFITGSIPKLWSCANVVPLFKKGNKLDPTNYRPVSLTSIVGKVMERIIKDHMMVFLIENNLISKEQHGFVNNKSCITNLLETLDLITQAYEEDISVDVLFLDFKKAFDSVSHTKLLKKLFRLGFVSSLLNWCKSFLSDRTQRVVIGEYISSWKMVTSGVPQGSVLGPLLFVIFINDLCRGIIKDTKLYADDTKVISINHCYDDNKILQEDINRLVKWSEDWLITFNESKCKVMYIGKKNPRYEYKLNNSVLTETMIENDLGIFISNNLEWKYHXNSAIGKANRKLGMIKNSFEYLDELSLKLLYKSLVRPHLEYGATVWSPFWKKDIDNLEIVQHRATRIESLRGKSYEERLKILELPTLFDRRRRGDLIQMYKISKGKDIVNFHHPPLNFELERSSRSNNCRIRRQFTKSRIRHHFFTNRVINDWNSLPQWILDKDNLNIFKNSIDNYFGF
>CR1-69_HM_gag#LINE/CR1 74-748   [Hydra magnipapillata]
MVNVQSTEFNVYKADQDKLIKSLIKTIDELKNCNLLLTERLNVLEKAKVVPSTSISWASVVSGNMPPKRSTEQLHLMNAVVAEAKEREKRESNVVVFGIEASKKADLLSAREEEKNSILHMMNSINAKIEIKQIIKLKSKSDKESPFVIVLNNRNDRNSFLKAAKSLKNSTEFNKVFINPDLTVAERYKAKLLREECKQKNLENSEPSLFYYGIRNEKVIKISK
>CR1-69_HM_pol#LINE/CR1 749-3769   [Hydra magnipapillata]
QSFYNCKNQKYFSHGSLTSLVIPKSLQKNHASSISKQRITAVNNKSIKKVICSKRSNFINSYNHLTTNSFNNFTVYLFNARSLANKLNDFFLYVESNKPALICVCETFFNDKLPNSMVCPKNYSIYRKDRVRIGGGVAIYCRNDVKSAIVSITQTDKDIDIICVDLIFGSSKLRLITCYRPPSYSLDDYIYLESMISIISNLCESVPQFVIVGDFNLPKIDWVNYVSPIEKCHNLFLTLVNNLGMYQYVLEPTRENNILDLVLSNIISLLSNISVECPFSTSDHNSVFFYINTFNYYQPETNSESFYDFKNTDIIAFNSYLSKISWDFDFSFVFTTEEYWNIFSNHLRKGIDRFVPIRTIYHNKKSRSYPKYIYKMLIRKSFLWKRWSITKTTLHKKAFIQYASKCKKAISTHHKNVELKLVKENNLSKFFSYVNKNLNNPKKIYPLKTNSNFTTTNVEIAEVFNKHFGSVFTIDDGILPKINTFVSEHIKMNFVDFSAKIVYQKLKNLKPSTSFGPDGIPNILLKQLAHIICIPLSYIFESSFTSSSLPKQWLQATVSPIFKKGSTSDANNYRPISLTCTSCRVMESIVSSSIADYLNINNLITPNQHGFLSKRSTCTNLLESTNDWNKALDSNLITDVVYIDFQKAFDSVPHPKLLKKLAMYGIIDNLLHWISAFLSNRYQRVLVGNSLSNPTCILSGVPQGSVLGPTLFLLFINDLPSIVKDLNCSLMLYADDIKLYSSFKDADYSHDLAVAIYKVYLWSKKWQLKIANNKCFTHRIAPTSFCKDINYNYQLGDHNLTWSTNPKDLGVTMDSYLNYSNHISNIVRASNIRGYLILKCFKSRDPRVIVKAYTTYIRPILEYCSPVWSPNRTKMNNTVERVQRRFTKRISNLNNVSYSSRLSILGLELLEIRRLKQDMITCYKILNNLVCLNKSSFFLFNNYIYTRGHNFKLRKLKCKLDVRKHSFSLRVVNIWNNLPSDVVNAKNIKSFKIKINSIDFEKYCSG
>CR1-71_HM_gag#LINE/CR1 229-1026   [Hydra magnipapillata]
MVTQKQLNDALENADKIAKEELKQALYVIKTLTARIDELTNRIDLQDIEIKSLKDSKSSEKPLLSKLVEQVGKPGTLANVAVVSALNKHNKDVTNREKRIVVFGLPESVKTQPSEITKDDTAEFKKVMASLSKSVNVVRIERFKKKKNFDSSKPAPLMIEVDSVFIRNDVLASAKQLASGTFKDIFIRPDRTAAEQSEFIKLNLERKAANSDLDKLGKLDKPFRFVIRSDKLRCIDVSQEVEINGRKKHPFIKWKDAQAARIAKTQ
>CR1-71_HM_pol#LINE/CR1 959-3985   [Hydra magnipapillata]
MDVKSILSSNGKMHKQPELLKHNESNRLTANTYLNALNTKIKSAKSNPKNKLLKCFYTNATSLNPTKMNELSALCDINMPDLIFISETWFTETSATQLNNYSLVKKNRIGHGGGVAIYIKRDLVAHEVSDCHLRETLNNSNSEQIWCEIKIVNEMILIGCVYRPPLSHIDDINKTIISAKQAVDRKAYSCMLLAGDFNFPDIKWHNDERIELLSGQNSAASVFLVTLANHNLEQLVDFSTFEASNGNAKNVLDLIITDSSTRVINLSSSMPLGDLSQGHRILSWDYVVLSKNRTTFSNKKYDFNKGDYKNFGKKIMETNWQQLFENKNTNECYELFCNKYDKLSKQFIPLKKVHSTRNAPWMNKEVLAMIKKKQQLGNYLSMTNWGSTTLICEYKKLRSQVQKACTHRVRVFEAQLASDKNNPKRMYAYAKAQQNVHVSIGAISDAKGETLTEAIHIANRLNEHFKSVFVDDSINDQLPVFERRHNQEDLGDVIISFEATLAYLNGLNPNKSIGVDNISPKVLKECAAQMTYPLTLIYNKALSEGSTPLAWKQSHVTPLFKKGSRLDAANYRPVSITSVPCKVMEKIIKEQITKYLEKTSCISNNQHGFMSKKGCTSNLLESVDYITKALSKRNFVDIAFLDFAKAFDKVSHRRLIHKLKAYGINGNVGKWIESFLTSRKQRTVLGNHSSDWTDVLSGVPQGSVLGPTLFIIYINDLTDNLKSVHKIYADDTKLLQEIRPEFHDADCLILQNDLNIISEWSKEWLMELNVAKCKVMHLGHGNINHEYVMNDGNTSLIIAATDIERDLGIFLSNDLKWNQHIQVATRRANMILGLLKKTFRSRDIKLWGKLYTTYVRPHLEFAVPVWCPYLKGDIKEIEKIQHKATKIPHDITSLPYAERCRRLNFTSLETRRRRGDLIQQFKLENGFEIINWHNPPLRRSPSNVLTRDFTYNNARHNFFTNRIVNDWNYLPLSCKKAPSINAFKSRIDKYFFPTAANSASFTEDELHV
>CR1-72_HM_gag#LINE/CR1 107-769   [Hydra magnipapillata]
MVNLQLGDFNTYKCEQEAIIVDLKKLIETLRTDNANLTKRVLDLENSKSKSSSAVTGDWASKVKKTPDQMQIINTIANETKERDKRENNLVIFGLEESTLSDKVKAIEEDKQNIETIMKKLKVNVKIKNVIKLKSKNGYKAPYIVVLNDKLERNSVLKNAKELKKDKTYESVFINPDLTESERYKSKLLREECKKLNNDNINKANFYFGIRNDKVVKIKK
>CR1-72_HM_pol#LINE/CR1 770-3874   [Hydra magnipapillata]
QLNAKKDLNHIRCFNYETNNKINLFSGGGQNLNKLLSNKRQLDIEIVNFHERKKCDLSINKEHDTQKCNELMIWYTNATSLNNKIDELRLQCEIYKPDVICVTETWFKAESDVNIISYNIFRSDRKTHGGGVCIYVKQCINQFETNNLQLNNNFIEQIWTCICFKNNKMLIGCIYRPPDISHEYNNYVLLSINAAKMSIYQKEYSDLIITGDFNYNTIDWSDNNCPFSATDNESQTNKFIECLEDCFLFQCVCEPTFQIANYKSTNILDLIITNDKNKIVSITHSAPLGNVKQGHHLLKCCYLMNDYKFSTEHKKSIRLYQKGNYELFSCHFNNVDWENGFKSKSINEMYDLFLYHYNYATNLFIPRINYQNRRNRNKWITPELKHKIRTKNNIWLANKRNGWNEESTKIQYNKLKIRIKNDIKNNIKQFESTLASKFKSNPKLLYKYINEKKSVKTHIRALEIDNGEIINDQFAIATELNKYFHSVYVNDNCTNIIEFHNIPSNLLLNTVLITQNDVQTRLQALDKSKSVGFDFVHPYVLKECSSSISYPLYLIFKKSMETGTLPDMWKKANVMPLFKKGSKLKASNYRPVSLTSIPCKVLERIIADCIMQHLIKNNLLSKKQHGFMKSKSCTTNLLEYLDILTDAFHNRTPVDVLYTDFKKAFDSVSHKKLLSKLLTFGISGKLLTWIVCFLANRKQRVVLGKSVTDWVDVLSGVPQGSVLGPLLFLVFINDLPENFINECRLYADDNKIIAPISSQNDSQLFQNDINKLDEWSTKWKLGLNFEKCKIMHFGSNNNEYSYFMNNNNTLMEIEKSKLEKDIGVYISSDLKWAKQVKYAASKANSILSLLNNTFKYKDKDLIKTLYCTYVRPNLEFSIQAWSPYYTKDINELEKVQRRATKMIPELRHLEYKKRLEILGLTTLETRRLRCDLIQQFKIFKGIEIIDIKQNQTMNSICSSGPAANIRGAKHRMKPELVRNCLKRQYFFSNRVVDGWNSLPAEVVQSTTVKSFKLNLQSVDLEAITNKIKTKKAYY
>CR1-75_HM_gag#LINE/CR1 2-712   [Hydra magnipapillata]
VGFLEAENKNQRKEIDFLKNNNNANITYQNNIHNADVWAGFVSKEKDLAAKEKNAALFAKISKENNEKNRILNNMIISGLTESVNLDDDNKAIDEILTILKVSSDDVKVKKRLKKKNASPPTPISCEIENQFNSVSSRPPLVLIEFKNYEKRQSALANARELKNKFGLTKVYVRPDQTENERIALSKLHVECRIRNNALPNSFVDLQGRQLNWGTRDGKKGFWSVRSGTIRWIERKE
>CR1-75_HM_pol#LINE/CR1 711-3671   [Hydra magnipapillata]
NRTPNPNTYSPLSFISSYSLSDLKCLYLNPTSLDNKWDEFQARIASLDYPHIVAVTETWFSATSSTNLENYTVYLRNRTIRGGGVAIYVRKDIHSFECEFSDELISEQIWCQILIGNDILLIGCIYRQPFTKYESNLQINKSIKRARALIDDGKFTSVLIVGDFNYSDIRWSDLGGKCKKGKQSSKIFLKTIDDCFLSQFVTKPTFINNTLDLVLSEDPDRIHNITIGPPLGCTQKNYFHNSLLWDFKLKTSTKSIRHHKVNYIYDKGDYNAISEGLKAINWPNLFTNKSADESFELFKNIYISLVEHHIPKYNMSFNFKKRDPKWFNSTIKAATNEKFRLFMKLRCSSSKFKDSIRVLYNKQNRLVKKLVADAVLKYESEVISACKSCPKKFYSYINSQKACKSEIRSLFDHDGVQLVDNMSIANCLNNHFFKAFSLPETHSKAPDFPRRTEIVCSPVSSSLFNCCNIEKLLSALDSSKGTGNDGIHPRVLKMCSKEFSVPLSLLFIKSFDSGQVPSGWKLANITPIFKKGQRTDPGNYRPISLTSAIGKVMEKIMRDVMTEHLVKHNLLSCHQHGFVKSRSCVTNLLEVMDIITKALSDNCAALLILLDFAKAFDRVSHLLLYHKLAGYGFGNNILAWLKDFLENRKQRVVLGNFSSEWKDVHSGVPQGSVIGPLLFLIFINDMPELVKNNCKLFADDSQLVAKIKTVTDLALVQNDIDMICNWSRLWCMELSINKCKVLKFRGGSTDINIPLTMLDKNGSQIPIEDVSVERTLGVLIHNKLKWSDQISDATLKANSILGILKRTFKKWNPTMFVKLYTAYVRPILEYCAPIWCPFLLKDIKKLESVQRRATKLVPQFRSLNYKKRLAYLGLSSLAERRTRGDVIQFFKIYKKLNIVNWQQQINRASALLCDGPAGHLRGAKHKIDRELSKNSQRHNFFRNRVVSSWNALPASVVAANSVDRFKNNYDKWNRSISRRSTIVGSR
>CR1-76_HM_gag#LINE/CR1 64-741   [Hydra magnipapillata]
MVLKADFEALEKRVSALEKAIKAKDDQLTEKXQQIEELIKKLEDKNCNDVRGNEELWTDVVKGKQKRKSINQLNLINAVAKESNEQKMREKNVIIFGLAASTNKNKDNAFDEDKKNVISIFNKIDTNVNIEHIIKLKTRNENQPPFIVVLKDKHERNKVLKSSKVLKDDDSFSKVFINPDLTEAERHKAKLLREECHRMNTERKQRNENNYYFSIRYDRVVKITV
>CR1-76_HM_pol#LINE/CR1 742-3774 via estwise with CR1-64_HM_pol, 2 frameshifts.  [Hydra magnipapillata]
QLPKNYKINKIDYQKSTDRNKKTINKVFKKINYESKSIESINVLSENTKKPTINNNDVTENFLSCWYTNATSLNCKYNEFIAEIVTSHPQILFISETWFNEMSLSNVPGYNIFRKDRIGKRGGGVCIYVKENIKSVTVSDKMLNDDDLEQVWTSLHIGNEKILCGCIYRPGTIDYELNLKIKINYKSIKRSYNLLIKSKYSGLLICGDFNYFSIKWNKENIGELINNSDISAKEFLKSSxKCLNDCFITQNVIKPTFQINEFKSTNVLDLILTESNKRIIDLNHFDNLGALSHGHQILKFLYSFRNNLKKTETVKKNITLYKHGNYNGFSDMLNSYDWHLEFKNLDANVSYNKFVDIYNKGLIYFIPTITKGVVKTKAPWMNSNLKKLIRKKRNLWRKCLHNRFLNKGNVLEYKSIRNKVKKEIKNQIKLYETTIALNVKKNPKAIYAYINKKSKVKEGINALNVNGKLETNYLSIAHSLNNYFSSVFTNEISDNIPFFKNRTNIICEDPTFSPDTVSIILKSLNPNKCTGVDGVHPFPLKCCADAFSLPLSLIFNKSYDTGIIPSMWLNANLTPLFKSGDKSEPSSYRPVSLTSVISKVMERILKATFMSHLENNNLLTKEQHGFSKKKNCCTNLIESMDLITQAMEDNLPVDIIFLDMKKAFDSVPHNRLCLKLKSYGFNYKAVRWCKNFVCNRVQRVVCNGEFSNWSPVTSGVPQGSVLGPFMFIVYINDLPNELSTNCKMYADDIKLINIIRSSSDIEKTQTDLNKLMTWSQLWLLKFNVSKCKRMHIGSKNTKHIYTMYDSVLNRVELPETKIEKDLGVMISNNLKWSSQVNYVSGKANKMLGIIKHSFKNLDINASKLLYTSLVRPYLDYANSVWYPYLEQDKKKIESIQRKATRIKCLQGKNYESRLTYFKLTTLEKRRKRNDLIQLYKIVKKIDNLTLEYPPDLIASNTRGHNMRFHRQLTKNPKRYYFLTNRVINSWNNLDQNIVDSKTLKQFKSKLDLFLT
>CR1-81_HM_gag#LINE/CR1 138-815   [Hydra magnipapillata]
MVNVQSTEFNVFKAEQEKLIKALNRTIEELKNLNLLLSERVKMLENAESVKSSPLLSWASVVSGKTPVKKTVEQLNLINVVTAEKKEREKRENNVIIFGINPSKAIDKSSAIKEDKNSIQEVLNSINLKVEVKQIIKLKSKIDNQPPFVIVLNNKTDRNSILKAAKLLKNSSEFKNVYINPDLTEAERYKAKLLRDECKKNNLENSESLLYYYGIRNDRVVKIAK
>CR1-81_HM_pol#LINE/CR1 849-3858 via tfasty with CR1-69_HM_pol, 3 frameshifts.   [Hydra magnipapillata]
MSHCATELANSSRISCEYLISKSSKPDKIICTKKCRNKPINLNLINGNSNNGCNSNNGCSSNPYSKNSVYLLNARSLANKLHEFFMFTEANKPAIICVCETFFTSKISDSIVCPKDYSIYRKDRIKIGGGVAIYCRNDIKSEQVQITQTDTDIDIVCIDLIFSSHNLRLITCYRPPFYSIADVAYIELMTAFIYNLCHSVSQFVIVGDFNFPKMDWLNYVSPNEKCHILFLNLVNNLGLHQFVQEPTRENNILDLVFSNNISFLSLISVECPFSTSDHNTVHFSININDLDQSNKNIESFYDFVNADIDGFQSYLLNINWDFEFSFVVFTVEDYWNVFSNHFCNGIHQFVPIRKSNLNKKIKHYPSFIGKMLNRKAFLWKRWSNTKNITHKKAYNKYASKCKKSLLTYQMRVELKLVKENNISKFFNYVNRKLNNSKSIFPLKDKNNNNKITCSNEEIADVFNKHFGSVFTNDNNYSPFINSYVDDSIGMKTVLFPPEAVYKSLKEIKASTSYGPDGIPNILLKKLAHLLCIPLSFIFDASFKSSSLPKQWRQAFVSPVFKKGATADPNNYRPISLTCTCCRVMERMINVYVIKYLGHHNLISLNQHGFLNKRSTSTNLLESANDWNTALDNHQITDVVYIDFQKAFDSVSHTKLLVKLASYNIKGNLLNWISAFLTDRYQQVKVGNSISNSIRIVSGVPQGSVLGPTLFLLYVNDLTAITNNLDCCVKLYADDIKLYSSYCDMDLSQDLVVALNRLLQWAETWQLTIACSKCFALRIAPPSLCKGIKVNYKLGEYSLAWSSNPKDLGVTMDCNLNYKKHIFNVIHQANSRAYLILKCFKTRDPCILVRAFTTYIRPILEYCSPVWSPHQIGLIKSVESVQQKFTKKIRSLRNLSYHNRLQLLGIESLEVRRLKNDLVTCFKIFRKLVCTDQSMFFAIDNNSHTRGHNYKISKQSCRLDIRKYSFSYRVVDMWNNMTSEAVNANNILMFKNKIKSFDFNKYLL
>CR1-83_HM_gag#LINE/CR1 58-753   [Hydra magnipapillata]
MVVSKDTTQAINTAIEVLRKELIERIIKVEKENERLNTENESLKKQLAEQCNQNNNKPLFSSLIKKTSEGAPPISDSETRLLNAISAEQKEKIKKEKNVLVFGLKESKRKSKDEIKEDDDESVGEVFDAIGLDKSCIVKHFRLNSRDKNRPGPLVIELVDPSYQKQVLSVARDLNKVEAYKNKVFINPDLTYRQRASLKLLLGERNSLNKIEEGQKFDISICYQKRYAAEN
>CR1-83_HM_pol#LINE/CR1 750-3622 via tfasty with CR1-62_HM_pol, 2 frameshifts.   [Hydra magnipapillata]
KSKNTKKINAPSSLISKLSEITCLYMNATSLNNKFDELIEVINSNKANVVMICETWWNNESVTNINGYTLFRRDRGVGRGGGVCIYVQNNIKAYEVSEKCLNDPNIEQIWCVIELGSEKVLCGSMYRTGISNISNCINITKSINFAHSMNLLNKYTGILICGDFNFNAIKWTEDYYGTLTSETDTPAKIFLECLNNCFMHQNVIKPTFQNNIGNETNVLDLIIAENKNRVYKLVHLPPLGGINHGHHIIKFNYSHEECIDNIVLIKEKFNFNRGKFDKLNNYFKILNWDNEFKGLEINKCYEKWLSLYEEGCKLFIPIIKPGSIQINTKPLWINRELKALSKEKRNVWFECRRQKFRDNCLLAKYKELNKVIKKKVNQRIKDFEYDLALNSKFNPKKVYSYINNKSKVKDNIRAIQLKNGSIETDLKVIANTLNGYFASVFNKPQTLSAPIIDIETQKICKNPDFNASVVEEYLNKLDTNKATGMDRVHPKVLKECKSTLAKPISLLFNKSFETGKLPKLWLCANIVPLFKNGDKLNPCNYRPTVSLTSVVCKVMEKIIKDKMMKHLVENKLINKNQHGFVNNKSCVTNLMESLDFITSSIDNGLDVIVLFLDLAKAFDSVDHERLLLKLNALGFKSKLFDWCQGFLKNRLQRVVIGNNKSEWEEVVSGVPQGSVLGPLLFVVYINDISNKIKSSCKLFADDMKILRAIKNDNDVIELQQDIDLLMEWSNEWLMKFNQQKCKVMIIGNSQHKVLMNNTALAYTSMEKDLGVYISDDLEWKHHVNKAVNKANQKLGQIKHTFKYLDEKTMKLLFIALVRPYLEYAAPIWNPYRQYDKDKLECVQQRASRIKILKGYSYEERLKKLDLLSLENRRRRGDLIQMFKYLKGYDIINFYTKPEMLDNGYKTRGHNSKLRRQYTGNIKRHNFFTNRVVNDWNNLEQETIDAVSINQFKKKIG
>CR1-84_HM_gag#LINE/CR1 259-1173   [Hydra magnipapillata]
MSKPSSDADRNGAHNTCVNLDVWLKELKTVVLDLKKEINEIKKENLAKDEKITKLEGRILVLELETKKTPETTNNANAAPTENVWFKKMSAQWLKPGSTSNTALVQAITNNNKLRENKAKNLVIAGLPISKGPSSADKIADDTKIVKDICVAIDNPNAGIKSVRRMFRANNSTSITQSPPLVVVEFDTIDIRNEILTSSRKLYGKQEFKGIYIRPDRTPAEQTEFAALLKERYEANNDLKKHGNLDNPFRFVIRNDRVRCVDVTETQDVNGTNKFIFAGESAARAARRAKFVIRNKSSERQHHN
>CR1-84_HM_pol#LINE/CR1 1172-4177   [Hydra magnipapillata]
KLDKNVIFNSPNNYNNTISSESGKQFINFLYTNPTSFTQNKLHELELMLSYTNPSDVIMLTETWFTNSSIVNITNFTIFRKDRDSKGGGVCIYVSNHLKSLEITDNQLCRENIEQIWCNIKIASESILVGCIYRPNDDATTINEILKSIKRAKELRNKGLFTSIVIAGDFNLAGIEWDSDNTPRTSTQYEQTFIETLHDNNLTQLVNFPTFIKNHDESAKTTLDYIIMNQPERLDQLLDFPPLGATCRGRGHLVLTWRYLLNKSTTNNYDNNLRKKYAFDKGNYELIKQYFNKIDWESKFTNSSIDEDYEYFVKEYILACNKFIPIRNNKNNTNNLEPWINKTAKIALKIKHKLYYRAKNNNWRRTQKTKSKYNRAAKQVKKEIFKSTCAFERHLAHESKKNPKLIYAYINKRQQVKRAIRSLYDKIGNITNDQINIANTINNQFQSVFVKEPDDEPVFPIITEHKCSLLTILQDINEQTIKIRLENVDTSKSIGGDNIHPFVLKHASVAIAIPLSLIFKKSLATQTVPKNWTEANVTPVFKQGNRLLAENYRPISLTSIVCKILEKIVREALTAHLELHGLLSNSQHGFTTKKSCVSNLLETLNTITKALAQGHNVDVIYLDYAKAFDTVPHKRLLAKLLSYGIENDLVKWIRAFLSNRRQRVVLGETVSDWCNVTSGVPQGSVLGPQLFNIYINDLPRLLDNTSKLYADDTKIISIVDTHQQSLNLQNDLNKVQNWSKTWLMKLNTKKCKVMHFGKFNNNFKYQMQDTSSNNNMHTLETTTEERDLGVILSSDLKWKPHIDKITNKANSVLKMLKNTFTCREKELWKKLYTSLVRPHLEYASTAWNPSLASDIDKIEKVQKRATKWSQPNTAYANRLANLGLTSLAKRRERGDCIETFKITNKIINIEDAFFNMKQSTNLRTFNNHQLQKDIYSSRQANDYSKAVKFRDNFLSNRVTQVWNYLPNSVIEASGATPKAAINKFKNNYDKFQKDKINSIKQ
>CR1-85_HM_pol#LINE/CR1 3-2876 Nearly complete, via tfasty with CR1-69_HM_pol, 4 frameshifts.   [Hydra magnipapillata]
FTNHLTxQPFKTIKCAYFNARSINNKLHHLHNLLENNNFDIILITETWLNKKTPDSLLLNGKNFKVFRHDRxVKAVGGSLILVNNNIHSVQYNLEIPEELQNTEITCVDIFVSSIDQKIRLSCVYHPPCAATSILRTKALCKLIYKITSKCNSTCIIAGDFNLPLINWSIPISFGDSSHDLFVETCSANALDQLVSDNTRHNNLLDLILTNNSKNVFNVEAIAPFTSTCDHCMIVFDCNLEKSKSIKKSIKYNFYKGDYNAIQSDLQNINWYMLAKQNQDVEVFWQIICKYLNSSISAHVPVHCNRKNNFQPLAIWKLASKKRILYREYKRTGNTSIHIKYKICSRLYDAEINKYCIFREKDLVDKANIAQFYSFVKAKTKCCSSVAPLLQPDGSLSTDDCEKSNLLNNFFSSVFVTDNGIAPVLDLPTHSNSLNNVMFPYSSVVSSLQNLPPKSSKSPDGYPAILLRSIANAIAIPFSILFELSMSKKSIPLIWKTAIVCPIYKKGNPSLTTNYRPISMTCIVCKVMESIIAECITNYLLINNLITAHQFGFLKRRSTCTQMLTTLNEWTTAANNKKIVDIVYIDFEKAFDSVTHSKLLFKLHCYGIQYELLNWITNFLTNRSQCVCVGNSYSKKILVKSGIPQGTVLGPILFLVFINDVTSCIDGDCSIKLFADDSKLYQASNDGNNINQYLQLINTLKNFSEWSKVWQLNIATKKCFHLRYGNSSLPLNSYSMNIGTPIESINSIQDIGIVVSSDMKFSNHCSFIASKAHSRSYLLLKSFISNDFKLLIKAYKVYVQPIIESCTSVWNPHLLKDIRRLEKVQKSFTRSVCKRCHIPYKDYSSRLNIFNLESLECRRIKFDLVMTYKIIHNLVDLPFSEFFTFITFAPSYYPTRCHAQKLYSRIKCKNDTRRFFYCERIIKIWNSLPDYIVYSSTLSLFKSNLKKYNVHHHCTLF
>CR1-88_HM_gag#LINE/CR1 3-889 via tfasty with CR1-22_HM_gag, 1 frameshift and 1 stopcodon. [Hydra magnipapillata]
KTYRTEVGAMFRTALTIVLSEIQQQYNKQINELKEEIVALKTGNEQTTTIRPINRPTNAPVSYSSTVNLIGRVNTTQRNHLLNITAAEVNTRKERESSAIIVGLEESRVxKNLPSKRIQIIVNEFLDSIKIDRSNVVHIQRFKNRTQTNVDSSAKKQIGIVKVVFKSSEYQKEALKNGNYRNISKFKDVFIREDRTPAEQSEFNKLLATKKRKNEEFNKIAAQSIKPFRWIIHRRTKEVRCIDAGESASQKKRIWASKPQLDQIRADLKKFQELQKSQTPAVATNRFGIISIEEEA
>CR1-88_HM_pol#LINE/CR1 882-3953 [Hydra magnipapillata]
KKPKTNQLKANSTQKSKAKQSNPQPTIHQESVNKLHFWAHNPCSLNGSKKDELTARIQSEITNNKPDIMFFTETWFNDNSDTNIEGYQAIIRNRDGRSGGVAIYIKNNLTVSETNIEILQKPANIEQIWRIIKCQNDSVLVGCIYRPHDLDDNVLAQIINSIKAAKRSLESLKCSSLLLYGDFNFSHTTYEQLDTGGNSATAAHILNEHQTDIKFQKCLDECHLTQTITFPTYRNSLDVRPVSTLDLIITDEPDRLIFLEECEPLGRTPRGQAHCMIKGTYALPESSLQGTLTNPRFIWSRANFDMLSAYITAHDWENTVGLSSTRENYKILIEKYKEAVKLYIPSTTKPFKEKKEPWNTQSVNEAVNNKRDTWRKFLAAGSSLKDSIRLEHKLACKKVSKEVRKAVVDYEMGIAYVFKSDPIKLHNHVKHKKLVKDTIRTMEDLSGNITTDKNEVAKILNDYFQSVFTTDPLDQLPNFEARTEVICDPDDSFITESNIRKRLESLKESKSMGFDGIHPRVLRNCAKAFARPLALIFRKSFNEGIVPDLWKRSNVSPIHKKDSKQKAANYRPVSLTSVPCKVMEGTIHETIMNHCIANDLITKEQHGFLKKKGCTSNLLETRDILTESVHQGSAVDVIYTDFAKAFDIVSHRRLLHKLQAYGIRGALLKWIEAWLSNRQQRVVIDGAESEWKEVTSGVPQGSVLGPLLFIIYINDLPDNLQKHIKIYADDSLQKHIKIYADDSKIIRVIDNDDDVKSLQTDIDSTVAWSHEWQMSLNLDKCKVMHVGKAKNKSTQLYTMTGRNGIVHNLETTTLERDLGVLVSDDLKVCQQVESASARANSMLGRLKKAFRSRGLVLWKTLYTTYVRPHLEFAIQAWSPHLRKDIEKLEQVQHRATKLITEIKNDSYETRLQKLGITTLETRRTRGDLIQNFRIQNGFEVVSFFHKQQLAPSLSTYNLRGHNQRLERQNVNNCEERAHFFTNRVVNPWNALAPNAIRAQSVNAFKDHIDGKRASSVILLNDLSA
>CR1-89_HM_gag#LINE/CR1 3-599 [Hydra magnipapillata]
LSRVEHLELLERQNKNVQTLDNVVVENEKAWNIVAGKNIKKTKEQINIINTIANETAERMKKENNILIYGITQCNNEDILEKKKFDQNEIKTIMSKINTEAIKIKKLTRLRSKTEGKSAPIILELESKACRNLMLKNAYNNKEKINGIYFNVDMTEAERYLMYQLRNQTKELNTSITNTSSIYYGIRDYKIVKLKRTQN
>CR1-89_HM_pol#LINE/CR1 609-3674 [Hydra magnipapillata]
MSLNISSFKPLLPNNKFNKKNIVTNTLTKYVKKSQTRDVIISEKRSIDITKNCLSCRYTNATSLNNKFDLFLLDIATFKPDIYMITETWFNENSVTHVNGYQIIHNNRSNRSSVKAHGGGVAIYVKEGLLVYSPNDSFTKNINIEHTWCILSIKDEQILLGCIYRPPDASEEINNYICEIIEAAKNKIDHNRYSGLLISGDFNYPNIIWKKNNVQTMKKYDKYSTKFVEYINDNYLHQAVMSPTYNADLINGNILDLILTETPERINKIHHNPTLGNTRNGHQILSWKYFLKNTTKKEMSNYGKSGFNYKLGNYTVINKAINENDWESLFGKNSINECYEIFLNIYDKLCNKYIPKKKIYFNKQPQPKPWIDREAKKAIRNKTSLWHKLLSNGFKCDQLKVQYILINKTIKNLIKTKRINYEKKIADSSKENPKLFYAYVNSNRKIKLGINIITDKNGSLQTNRDDIANILNENFHSVFVIEDPTNFPNIALKTSKTLELDIDSIITQDIVRIKLSELNVNKALGADGVSSYVLKKCQNSFCKPLELLFKRSLQEEQIPLIWKMANVTPLHKNGDKNDPANYRPISLTSIPCKILESILGNKIMDYMLANNLLNSNQHGFQKNKSCTTNLLETQDILLDAIENGWCVDVLYTDFSKAFDKVPHMRLMSKLISYGIVGVILNWIEAYLHNRKQRVILGDCVSKWLTVESGVPQGSVLGPLLFLIFINDLPDTLKNNIKLYADDSKIINIFKSDEDIRINKLQLDIDNIMKWSSLWLMKFNYEKCKIMHIGFKNPCITYSMFDAETQQNNILAASKVERDLGVMMQSNLKWTSHIDKAVGKSNQMLALIKRTFKYFDSNMTKKLYTTFVRPHLEFAIQAWCPYLKQDILKLEKVQRRATKLVPAFKKMPYEKRLQLMKLTTLEERRLRGDLIFQYKIQNGYEKINWINDSTSQVQLKPYNFRSHNQKLTKAYCKSNYRYNFFSCRVVNAWNGLPPYIIESMTIDQFKNKLDKSDYCKNYLLNTK
>CR1-B_gag#LINE/CR1 201-1490 [Gallus]
MGAPQWKVGVTKTVETQAEVPCSSRRKTVAKKTVDSQTEDLCMHERKADGKICVVTQIEVPSRDASTQVTGCVDCWSLAFAVPDDGGRTCIRCDQLNDLLSLVIDLKEEVERLRTIKDCEREIDWWCQSLSALKSWHTAEALHGACQPLPPCKQVVEGNRPADGAAVSSLSSPPPSSNLREEEEWKQIPARRGGHPPSRPSSAPQVPLHNRFEALELEGGVSETVEGGPPVRLPRVKRSTPHLTTASTRKDRRVVVIGDSLLRGMEGPICQPDPTRREVCCLPVARVRDISRKLPGLIRPSDYYPLLIIQAGRDEIAEKSLSSIKKDFRGLGQVVDGAGVQVVFSSIPSVAGKGTERIQKTHLLNKWLRGWCKHRNFGFFDHGAIYSAPGMMAADGSSLSLRGKRILAEELAGLIERSLN
>CR1-B_pol#LINE/CR1 1493-4462 [Gallus gallus]
MKGEGDKTKATGVERVVRGLVPNSMGKDGGVQRNGVGQGDAGNATVLGDPRSPIKAVRWKAQLKCLYTNAHSLSNKQDELETVMHLESYDLVAITETWWDDSHNWNTTIDGYRLFRRDRRGRKGGGVALYVKEWIDCEELPLRNSQEQVESLWVRIRDGTNKGQLVIGVYYRPPDQGEAVDEAFLLQMWEASCSQALVLVGDFNHPDICWKDHTASCKRSRRLVECIDDNFLVQVVDRPTRGEVLLDLLLTNAEEIIKGVNVGGSLGCSDHALVKFMISRDVGLANGGVRTLNFGRENFKLFNGSLAMIPWNAVIKDKDVEESWLLFKDALLKAQEVSIPLNRKVGRRDRKPAWLGKDLLGTLRVKKGAYKLWKQGRVTWEEYRDAVRTCRRRIRKAKAQVELNLARDVKNNKKTFYRYIGQKRQTKTGVPSLVNLKGELASTDEEKAEVLNEFFASVFTGGQDSSLSHVPEPCTPKPPGGDQGGKSPPTLRAEQVRDRLMRLDEYKSSGPDGVHPRVLKELAEVVAEPLSIIFEKSWLSGEVPDDWRKGYVTPIYKKGSKEDPGNYRPVSLTSVPGKIMEQILLDDMLDHMRNERVIRDSQHGFTRGRSCLTNLVAFYDGVTALVDEGKATDVIYLDLTKAFDMVPHHILISKLEGCGFDGWTTHWIRNWLKGRRQRVVTNGSMSRWRPVMSGVPQGSVLGPVLFNIFINDIDDGIECTLSKFADDTKLSGAVDTEEGRDAIQRDLDRLERWARVNLMRFNTAKCRVLHLGWRNPRHLYRLEGAVLESSSAEKDLGVLMDDKLNMSQQCALAAQKANGILGSIMRGVASRDREVIVPLYSALVRPHLEYCVQVWRPQYKKDRELLERVQRRATKMIRGLEHLPYEDRLRELGLFSLEKRRLRGDLIAAFQYLKGAYKQEGSKLFERVDNSRTRGNGFKLKEGRFRLDVRGKFFTRRVVRCWNRLPREVVDALSLEVFKARLDGALGNLV
>CR1-C3_gag#LINE/CR1 377-1493 via tfasty with CR1-H_gag, 1 frameshift and 1 stopcodon.  [Gallus]
MVTTRRGRQAEAETQTGGPQPLWADACTQTDLLRSERAAQTFGCGELWNLEVTRGTEVGEGCHGCRCAQLDDLLEQLTRLXEEVARLRCIQQSEREIDAWYRAVARADRQPCLGAQPGEXDKQTSHLTEGKHVQGEGDWTFVSARGKRRRLPLAPEVPLANRFQALVWEREEGMDSGLXPERGDHIKKVQPRTxVTTSATKKKRRVLVIGDSLLRGTEAPICRPDNLSREVCCLLGARIRDIKKRISGTIKPXDYYPLLVFQAGSREAATRKLKNIKEDFTSLGKMLKGSGAQVVFSSVLPAGDWDPGRRRRTDQLNDWLRGWCHAEGYGFYDLGRTFDKPGMLTWDGTQLTRRGKNILGSKLAGLITRALN
>CR1-C3_pol#LINE/CR1 1394-4432 [Gallus]
QTRNVDVGWDATDQEGQEYTRQQAGWAHHQGFKLELLGEGGVLLSDREEPGNTVTLGSSRGKPQICPGGLWEGSSRKVMRPKAQLKCLYTNARSVGNKQEELETVVHLENYDLIAITETWWDDSHNWNTTIEGYKLFRRDRQGRRGGGVALYVKKWIDCEELPLRNSQEQVESLWVKIRDGTNKGQLVVGVYYRPPDQGEPVDEAFLLQLQEVSCSQALILMGDFNHPDICWENNTVSCKRSRRLLESIDDNFLVQVLDRPTRGEALLDLVLTNAEEIVKDIKIGGSLGCSDHALVEFVISRNVGLAKSGVRTLNFRRANFRLFKELLDEISWEAVLRDKGVEQSWLLFKDAFLRAQELSIPQNKKAGRGGRKPAWLGKDLLVKLREKKGXYRQWKQGRVTWEEYRDAVRTCRDGIRKAKAQMELNLARDVKNNKKGFYRYXGQKRQAKESVPPLINEKGELATTDMEKAEVLNEFFASVFTGSQDSHISHIPEPHIPEPLGGNWGSKLPPTVRAEQVRDRLMRLNVYKSMGPDDMHPRVLRELADVVAEPLSIIFEKSWLSGEVPGDWKKGNITPIYKKGRKEDPGNYRPVSLTSVPGKIMEQILLEDMLRHMRDEQVIRDSQHGFTKGRSCLTNLVAFYDGVTASVDKGKATDVIYLDFCKAFDMVPHHILISKLERYGFEGWTIRWIRNWLEGRSQRVVVNGSMSRWRPVTSGVPQGSVLGPVLFNIFISDIDDGIECTLSKFADDTKLSGAVDTAEGRDAIQRDLDKLERWAXVNLMRFNKAKCKVLHLGRGNPRYVYRLGEELLESSPAEKDLGVLVDEKLNMSQQCALAAQKANGILGCIRRGVASRAREVIVPLYSALVRPHLEYCVQVWGPQHRKDVELLEXVQRRATKMIXGLEHLSYEDRLKELGLFSLEKRRLRGDLIAAFQYLKGXYKQEGNQLFTRVDSDRTRGNGFKLKEGRFRLDVRGKFFTERVVRCWNRLPREAVDAPSLEVFKARLDGALGNLI
>CR1-C_gag#LINE/CR1 439-1530 [Gallus]
MVTTRRRAAAKRNVETQTESMNAHAAVQVSGCGECLALSLLQEGSRDTTCVRCEQVDDLLSLVVELKEEVERLRSIRDCGKGIDWWSCTLPSLQEGCGGDAPQAVGDHLPSHSQVGRGDLKDSEGWKQVPVRGNKRTAPQPVPPSQVPLHNRYEALELEGLGDVDVGESPSVQERLPKASQSAPRFATTSVRKKRRAVIIGDSLLRGTEGPICRSDPSHREVCCLPGARVRDVARNITRLVKPSDYYPLLVFHIGNEEVGKRSSRAIKRDFRALGRLLKGSGAQVVFSSVLSVGDWDPHKRRRVDTLNEWLCEWCRTQGFGYYGLGRSLEKGGMLTADGSRLTRRATNILGNKLAGLVSRALN
>CR1-C_pol#LINE/CR1 1515-4543 [Gallus]
QGFKLDMMGEGGVLGDREVRGNAVTLGGGKGKPQTCPGGIREGSSEKATRPIAKLKCLYTSARSMGNKQEELETVVQLGKYDLIAITETWWDESHDWNTLIEDYRLFRRDRQGRRGGGVALYVRKWIDCEELCLRNSHDQVESLWVKIKDRSSKGHLVVGVCYRPPDQGEAVDEAFLLQLQEVSRSRALVLMGDFNHPDICWDSGMAGGRQSRRFLESVEDNFLVQVIDGPTRGEALLDLVLTNAEESIREVKIGGSLGCSDHALVEFVILKNAGLAKSRARTLCFRRANFRLLKELLSGIPWETVLKGMGTEQSWQLFKDTLLRAQRLSIPQQKKSSRGGRRPSWLCKDLQLKLREKREMYRKWKQGCVSWEEYRAVVRVCRDRIRKAKAQMELNLARDVKDNKKGFYRYIGRRRQAKESVPPLMKGNGELASSDIEKAEVLSECFASVFTGGQASRVCQDHEPLGEGVGSGFCPTVTVEQVRVLLMKLNVYKSMGPDDIHPRVLKEMADVVAEPLSIIFEKSWLSGEVPGDWKKGNITPIFKKGRKEDPGNYRPVSLTSVPGKIMEQILLEAMLRHIRDKEVIRDSQHGFTKGRSCLTNLVAFYDGVTASVDGGRAVDVIYLDFCKAFDMVPHHILLSKLERCGFEGWTVRWIRNWLAGRSQRVVINGSVSGWRPVTSGVPQGSVLGPVLFNIFINDIDDGIECTLSKFADDTKLSGAVDTLEGREAIQRDLDRLEKWAHENLMRFNKAKCRVLHLGRGNPRYLYKLGEDLLESSPAEKDLGVLVDEKLDMSQQCALAARKANCVLGCIKKGVASREREVIVPLYSALVRPHLEYCVQAWGPQYRKDVELLERVQRRATKMIRGLEHLSYEERLRELGLFSLEKRRLRGDLIVAFQYLKGAYKQEGERLFTRVDSDRTRGNGFKLRQGRFRLDIRRKFFTQRVVTHWNRLPKEVVDAPSLEAFKARLDVALGSLVWWLATLHIAGGLKLDDHCGPFQPRPFYDSMIL
>CR1-D_gag#LINE/CR1 423-1539 via tfasty with CR1-B_gag, 2 frameshifts.  [Gallus]
MVSTRRRXRVSAPVRKDAATLTEXGGNHAAVQTSGCVECMSLSLASWGSSQNSCVRCEQVDDLLXLVARLQDEIYRLKSVMGDKKKEQWKPQFTHAQTGYFKGKKLQNPRQPVSHQVEEKNCKAGGKNTKERSGWRQVCARSCKRKPSLPAPPPQVPLYNRYEALDVEGPSVGDNSPLXLDXLTKPNQEKPSPNIKTTSLKKKRRVLVVGDSSLQGTERPICRADPLLREVCCLPGARVRDVTRKLPSLVRPTDHNPLLLFHIGRDEAATCGSRAIKRDFRALGRRLKELNAQIIFSSLPPVLGKDTETNQRILSLNTWLCGWCRRQNFGFFFDNQMAYMAPGLWAPDGVRLSQRGRRVLGEKLAGLIGRALN
>CR1-D_pol#LINE/CR1 1422-4583 [Gallus]
QPNGLHGTGFVGTRWGSPFSKGEKGPWGKASGAHWEGFKLGLKGDGGDSEPSHDKVWDGIAILEGQGASRGLEGPAALRGAGNTAAHTKSYDDEAVTAGATGEGNGENQGKYLKGIKELSFKEVTRPAAQLKCLYTNARSLGNKQEELEATVLLENHDIVAVTETWWDDSHDWSVAIDGYKLFRRDRRGRRGGGVAIYIRKGIECEELSLKNSHEQVESLWVTVRDRGSKGSLVIGVYYRPPDQAEPVDEAFYLQLQEASRSQALVLLGDFNHPDICWKSSTASCRQSRRLLECIEDNFLSQVXDGPTRGDAILDLLLTNANELIGDIRIGGCLGCSDHAMVEFTLRRDMRQAKSKIRXLNFRKANFQLFRELVNKTPWETVLMGKGAEQSWQIFKEAFLRAQELSIPRCSKSGKEGKRPAWLNRDLLVKLKSKKKMHRQWKQGQVPWEEYKEAARLCRDGVRKAKAQLELNLARDAKKNKKGFYRYLNQKRKVQEGVPPLVSDTGRLVTTDKEKAEVLNNFFASVFSDNCSPHSPQTFGLVGGDWGSNVPPTVSEDQVRDHLRNLNIHKSMGPDEMHPRVLRELADVVAKPLSMIFEKSWQSGEVPGDWKKGNITPIFKKGKKDDPGNYRPVSLTSVPGKIMEQILLEAMLRHMEDREVIRENQHGFTKGKSCLTNLVAFYDGVTASMDKGRATDVIYLDFSKAFDTVPHNILLSKLERYGFDGWTVQWTKNWLQDRVQRVVVNGSMSGWRSVTSGVPQGSVLGPILFNIFISDIDSGVECTLSKFADDTKLWGAVDTPEGRDAIQRDLDRLEQWAQVNLMRFNKSKCKVLHLGRGNPHYQYKLGDERIERSPAEKDLGVLVDGKLDMSQQCALAAQKANRILGCIKRSVASRSREVILPLYSALVRPHLEYCVQMWSPQYRRDMDLLERVQRRATKMIQGMEHLSYEDRLRELGLFSLEKRRLRGDLIAAFQYLKGSYRKEGDRLFSRVCGDRTRGNGFKLKEGRFRLDIRKKSFTVRVVRHWNRLPRDVVDAPSLETFKARLDQALGNLI
>CR1-E_Pass_pol#LINE/CR1 86-2986 via tfasty with CR1-E_pol, 1 stopcodon [Passeriformes]
EGGGAPIHPNPASQMPTPVMDAxKQCKGIPDTPASEPALSGARLRCXYTNARSMGNKQEELETCTRLRGYDTIGITETWWDGSYDWSIGMEGFRLFRKDRLGRRGGGVALYVNDQLESMELCLGKDEEPAESLWVKIKGRAGTGDVIVGICYRPPNQEDGVDEAPCRQIGVXAHSQALVLMGDFNRPDICWRDNTAGHKQSXRFLECVNDNFLTXVXEEPTRRGAMLDLVLTNREELVGNAVLQGSLGCSDHETVEXEILRAVRRARSKLTALDFRRADFGLFKDLLSRVPWDRALEGRGAQECWLNFKDHLLQAQEQCIPTRRKSGKNARRPPWMDKELLSKLRAKKEAFRKWKRGQVAWEEYREIVREARDKVREAKAQLELSLARDIKDNRKGFYRYVASKRKTRDNVGPLQKETGDLATLDKEKAEVLNDFCASVFNGKCSSHAAQVKKGKCRDWENEDPEPTVGEDQVRDHLRNLNVHKSMGPDEIHPRVLRELADEVAKPLSIIFEKSWQSGEVPDDWKKGNITPIFKKGKAEDPGNYRPVSLTSVPGKIMEQILLETMLRHMENKEVIGNSQHGFXKGKSCLTNLVTFCDGATALVDRGRATDIVYLDLCKAFDTVPHDILVSKLERHGFDGWTTRWIKNWLDGRTQRVVVNGSLSTWRPVTSGVPQGSVLGPILFNIFVGDMDSGIECTLSKFADDTKLCGAVDTLEGRDAIQRDXDRLERWARANLMKFNKAKCKVLHLGRGNPRHTYRLGGEVIESSPAEKDLGVMVDEKLNMSRQCALAAQKAXXILGCIQRSVASRSREXILPLCSALVRPHLERCVQLWCPQHKKDMELLEQVQRRATKLIRGLEHLPYEDRLRKLGLFSLEKRRLRGDLIATFQYLKGAYREAGEGLFVRNCSDRTRSNGYKLKEGKFRLDIRKKFFTVRVVRHWNRLPREVVDAPXLAVFKARLDKALSNLV
>CR1-E_gag#LINE/CR1 397-1497 [Gallus]
MVSTRRRAKAAALAGGYAPPTPXMTSASTQTELLKEEASVQTXVCGKCLDLAPGAEVSGKLACVRCAQVEDLLRQLTDLQETVKRLCTIREAEIERVSRIHVQPALNPQSGAKQPQTPPLAHPVGGEANSDEKWQIATRKTNKRKKPASKPEVPLQNRFTVLQTEKEKETITGKSSELSKAARPAPHCITTTATKKKRRVIVVGDSLLRGTEAPICRPDPLSREVCCLPGARIKDVTERLPDLVRPTDYYPLLLFHVGTSDTAVSNLKNIKRDYKELGAAVKNSGAQVVFSSILXVRGMGRERTDRIKKINKWLREWCREQGFGYLCHGTSFEKSGLLGEDGVHLSEKGKTIFGSKLSNLIRRALN
>CR1-E_pol#LINE/CR1 1395-4430 [Gallus]
EIWSSGGGWGSSLREGEDHLWQQAFQFNQEGFKLELPGEGILKPSHFEADDGNGCPGPGVGSQASKTAPKVQDKGTPIGKSASMGAQLKCLYTNARSMGNKQEELQACACLQGYDVIGITETWWDGSHDWNVGIDGYKLFRKDRQGRRGGGVALYINDQLESMELHLGIDEELTESLWVRVKGKAGEGDIVVGVCYRPPDQEDRVDEALYKQIGAASRSQNMVLMGDFNHPDICWRDNTAGHQKSKRFLECVDDNFLFQVVQEPMRKGAMLDLVLTNEEGLVSNVKLKGSLGCSDHEMVEFKILRASKRVRSKLATLDFRRADFELFRELLGRVTWXKALEGRGAQESWSVFKDHLLQAQKQCIPRKRKAGKNARRPPWINKELLDLLKRKKKVYREWKQERVTWEDYKEVVRAARDQVRKAKTQTELNLARDIKGNKKKFYRYISDKRKAREDVGPLRKETGDLVTRDTEKAEVLNDFFASVFTGKGSSHTAQAAESKGKNLEKEDLPAVSEDQVRDHLKNLKVHKSMGPDEIHPRVLRELADEVAKPLSIIFERSWQSGEVPTDWKRGNITPIFKKGKKEDPGNYRPVSLTSVPGKIMEQILLKALLRHMENKDEVIGGNQHGFTKGKSCLTNLVAFYDGVTASVDKGRATDVIYLDLCKAFDTVPHDILVAKLEKNGFDGWTTRWIRNWLDGRTQRVAVNGSMSKWRPVTSGVPQGSVLGPVLFNIFVGDMDSGIECTLSKFADDTKLSGAVDTLEGRDAIQRDLDRLERWAHANLMKFNKAKCKVLHLGRGNPKHRYRLGGEWLESSPEEKDLGVSVDERLNMSRQCALAAQKANRILGCIKRSVTSRSREVILPLYSALVRPHLEYCVQFWGPQHKKDMELLERVQRRATKMIRGLEHLPYEDRLRELGLFSLEKRRLRGDLIAAFQYLKGAYRKAGEGLFIRACSDRTRGNGFKLEEGRFRLDIRKKFFTVRVVRHWNRLPXEVVDAPSLEAFKARLDGALSNLV
>CR1-F_gag#LINE/CR1 234-1304 (Initiation M currently is L in consensus)  [Gallus]
MYRQRACTRKTVATQTEGLPRNVAVQVSGCRECQSLLLPREDGKDATCVRCEQVDELLSLVVELREEVERLRTIRECEREIDWWSDSLRERCRDSAPQTVVDPLPCCSRAQRADSRGEEEWQQVPARKRRRPPPRPTTVPQVSLRNRFDALKPEGEVSEDKVGRLPPSVTKVRRSAPRLKTASSKKERRVIVVGDSLLRGTEGPICRPDPTRREVCCLPGARVRDISRKLPGLIHPSDYYPLLIVQAGSDEVADRSLRAIKNDFRGLGRLVDNAGIQVVFAGIPTVAGKDNAVTRKTHRINTWLRGWCKRKNLGFFDHGAVYSAPGLRSADGYHLSQRGKRILAQELAGLVERSLN
>CR1-F_pol#LINE/CR1 1184-4162 [Gallus]
SWGGLLGTWPEVCRWVSPVSKGETDPCPGAGRTCREVFKLDMRGEGDKTRPARDEPGGAIIGLGVRREAQLKCVYTNARSMGNKQEELEAIVQQASYDLVAITETWWDHSHDWSAAMDGYKLFRKDRQGRRGGGVALYVKECFEVTELMTGDNKVESLWVKIRGRADKADILVGVCYRPPNQDEETDELFYEQLAEAARSPALVLMGDFNFPDICWEYNLAQKKQSRRFLECMEDNFLMQMIREPTRGAAPLDLLFTNREGLVGDVEVGGCLGQSDHDMVEFSILGGVRRGNSKTATLDFRRADFELFRRLVGRVPWGSVLESKGVQDGWLLFKKEVLKAQEQAVPLSRKMSRRGRRPAWMNRELFLRLQEKKRIYLLWKKGRATRKEYKEVVKMCREKIRKAKAQLELNLAAGVKGNKKLFYKYINSKRRTRENLHSLLDEAGNVTTEDKEKADVLNAFFTSVFKSQTSYPQVSPLSDLAALAGEQTKPPTIQEETVRDLLLQLDCHKSMGPDEIHPRVLRELAEVIAEPLSIIYQRSLLTGEVPEDWRLANVTPIYKKGCREDPGNYRPVSLTSVPGKIMEQIVLREITRHVRDNRGIRPSQHGFTKGRSCLTNLISFYDLVTRLVDEGKAVDVVYLDFSKAFDTVSHSILLQKLAVRGLDRYTLGWVRNWLEGRAQRVVVNGVKSSWRPVTSGVPQGSVLGPVLFNIFIDDLDEGIECTLSKFADDTKLAGSVDLPEGSEALQRDLDRLDSWAEANGMGFNKTKCRVLHFGHNNPRQRYRLGAEWLEDCVEEMDLGVLIDARLNMSQQCAQVAKKANGILACIRNSVASRNREVIVPLYSALVRPHLEYCVQFWAPHCKKDIEALERVQRRATKLVRGLEHRPYEERLKELGLFSLEKRRLRGDLIALYNYLKGGCSELGVSLFSRVTSDRTRGNGFKLRQGRFRLDVRKYYFSERVVRHWNGLPREVVESPSLVVFKERLDVVLRDMV
>CR1-G_gag#LINE/CR1 220-1296 [Gallus]
MVSTRQQAYSKKTVATQTEGLPRNVAVQVSGCRECLSLLLPGEGGRDSTCVRCEQVDELLSLVVELKEEVERLRTIRECEREIDWWSDSLACQREGCQGDTPRKVVDPLPCHSRTDLTDEEGWKRVPTRRHGSPPRLPTPLPQLPLSNRFEMLEIEGEVSGEAMEDLPRREPKARRSPPRLETASVRKERRVVVVGDSLLRGTEGPICRPDPSRREVCCLPGARVRDITRKLPKLVRSTDYFPLLIVQVGSDEIAQRSLRTMKRDFRGLGRLVQGVGAQVIFCSIPSGAVRDTERAWKAQVMNNWLRGWCRGRNFGFFDHGAVYSAPGLLSVHGTHLSQRGKRILAQELAGLIERALN
>CR1-G_pol#LINE/CR1 1176-4151 [Gallus]
SWGSLLGPWPVVRAWNPPISKGETNPSAGASRAYRKSFKLATTGEGDKTGLTRDEPRGTMLELGVRQMTRLKCIYTNARSMGNKQEELEAIVRQANYDLVAITETWWDHSHDWSAVMDGYKLFRRDRRGRKGGGVALYIKXCFDVEELGVGNDKVECLWVRIRGKACRGDILVGVCYRPPNQDEEXDEAFYEQLAEVARSPALVLMGDFNFPDICWKYNTAQRKQSKRFLECVEDSFLTQLVREPTRGGALLDLLFTNSEGLVGDVKAGDCLGQSDHEIVEFSILGDVRRVTSKTAILNFQRADFDLFRTLVAXVPWESLLKGKGVQEAWTLLKMEILKAQEQAVPECRKASRRGRRPVWMNRELLLRLRKKKRVYVLWKKGQATWGDYKEVAKVCREEVRKAKAQLELRLATAVKENKKSFYKYISGKRRTKENFHPLLDAAGNVTTEDKEKAEVLNAFFTSAFNRQISYPQGTLRPDLEVWDATQNTPPVIQVETVRELLLHLDCHKSMGPDGLHPRVLRELAGVIAEPLSAIYQRSWLSGEVPEDWRLADVTPIYKKGRKEDPGNYRPVSLTSVPGKVMEQIILGEITRHVRGVQGIRPSQHGFMKGRSCLTNLISFYDWVTRLVDEGKAVDVVYLDFSKAFDTVSHSILLGKLAARGLDRYTLLWVRNWLEGRAQRVVVNGVKSSWRPVTSGVPQGSVLGPILFNIFIDDLDEGIECTLSKFADDTKLGGGVDLPEGREALQRDLDKLDRWAEVNGMRFNKAKCRVLHFGHNNPMQRYRLGAEWLDDCEEERDLGVLVDARLNMSRQCAQVAKRANAILACIRNSVASRSREVIIPLYSALVRPHLEYCVQFWAPHYKKDIEALERVQRRATKLVRGLEHKSYEERLRELGLFSLEKRRLRGDLIALYNFLKGGCDEEGFGLFSQATNRTRGNGHKLYQRRFRLDIRKNFFSQRVVRHWNGLPREVVESPSLAVFKRRLDEELRDMV
>CR1-H_gag#LINE/CR1 471-1688 [Gallus]
MAAPRRKAAARKNVETQTEVPCTHERKAAAKKNVETQTEVPKQDASAQVSGCSECQSLAFAVLGEGDSTCVRCDQLNDLLSLVVDLKEEVERLRSIKECEREIDWWCQTLSAPRSWQPAEAPHGARHPLPPCKQVTEGNQQADSVPAAVSPLSSPPPSNNGEESGGVGQWQKAPARRCRRALPEIPLPPQLPLRNRYSALQGQLDNGGDDGSPQLVVLPKSNQTSLSIKTSSAKKKRRVIVIGDSLLKGAEGPICRPDPLHREVCCLPGARVKDVRKKLPSLVRPSDYYPLLLFQVGSDDIGRTSLRTMKKDFRALGRQVKGSGAQVVFSSIPPVIGNDEGLNMMGQRINTWLRAWCARQGFGFFDLCSVCTRPGLLATDRSSFSHRWKGVLRRELGRFIDRALN
>CR1-H_pol#LINE/CR1 1676-4699 [Gallus]
SFKLGTKGGGGVTGVTRTEPVCNVPVLVGEGCASKIPQSCVLVKEEDDSPFCRKNTRVGVRLVAVETPEYGHEGIRATATQKEAQLRCLYTNARSMGNKQEELEAIVRSESYDIVAITETWWNDSHSWSAVMDGYRLFKRDRQGRKGGGVALYVKKECECMEINDGDDRVESLWVRIKAKANKTDIIVGVCYRPPNQDEEVDKTLYRQLGEVSRSLPLVLVGDFNFPDICWIYNTADREQSRRFLECVGDNFLTQLVREPTRGSKILDLLFVNREGLVGDVKVGGRLGHSDHEMLDFSILVEPRRGVSRTATLDFRRADFNLFRTMVERVPWEVVLESVGAQEGWEYFKEVILKVQELTIPKSRKTSRRARRPDWLNRDLWLELKNKRKVYGLWKSGQATYDDYRYVVKLCREKIRKAKAQLELNLATKVKDNNKYFYKYINSKRRARENLHPLLDAEGNLVTKDQDKAEVLNAFFASVFNSKTCYSLGTQPPALVDRDGEQNRPCMIHDEMVLDLLRKLDAHKSMGPDGLHPRVLRELADVVAKPLSIILRQSWLTGDVPADWRLANVTPIFKKGRKDDPGSYRPISLTSVPGKVMERIISGAIMDQLKVNQGIRPSQHGFTNGRSCLTNLISFYDKVTRLVDEGKAVDVVYLDFSKAFDTVPHNILVEKLAAHGLDGRTLRWVKHWLDGRAQRVVVNGVKSSWRPVTSGVPQGSVLGPLLFNIFINDLDEGIECTLSKFADDTKLGGSVDLPEGRRALQRDLDRLDRWAKVNCMSFNRAKCRVLHFGHNNPRQPYRLGEEWLESCLMERDLGVLMDSRLNMSQQCAQVAKKANGILACIRNGVVSRTREVILPLYSALVRPHLEYCVQFWAPQYRKDIEVLEQVQRRATRLVKGLENMPYEERLKELGLFSLGKRRLRGDLIALFQYLKGAYSESGVGLFSLVTGDRTRGNGLKLRQGKFRLDIRKXFFTERVVKHWNRLPREVVESPSLDVFKNRLDVVLRDMI
>CR1-Je_Tgu_gag#LINE/CR1 64-1164  [Taeniopygia guttata]
MAPTRQKATASLSSAPTTADAAAQTELRWEHAATQVPGCRVCPALTPAPASSSEHTCGRCAQVEELLRLVTELREEVSRLRSIRESERDCWNRTLPSLGQARQADRTHDTEDSLSSLRLAEHSDLRDGGQWRQVPARRSRRVSSVTAPPPQVPWRNRCEALQVEPNNNEDDGSSSXEVSLRLSRPAPCVKTASIKKKRRVVVIGDSLLKGTEGPICRPDPLLREVCCLPGAWVKDVKRKLPTLVRPSDYYPLLIFQVGSDEVATRSPRAIKRDFRALGRLVKGSGAQVVFSSILPVAGNDEGRNRKSQQINTWLRAWCHRQNFWGFDHGSVYTTPGLLATDGVHLSQRGKRIFAQELAGLIERALN
>CR1-Je_Tgu_pol#LINE/CR1 1149-4184  [Taeniopygia guttata]
KSFKLDLKGERDKTRLARDKPGGGTPVFEGRCASEVLRSAVSVEAGDGDPCGSKDARVIDVLETTEAPENGHAGIRASPPEKAAGSIAQLKCIYTNAHSMGNKQEELEAIAQQENYDTVAITETWWDDSHNWSAAMDGYKLFRRDRQGRRGGGVALYVRECFDXLELNDGDDRVECLWVRIRGKANKADILVGVCYRPPNQDEEADEIFYKQLGEVSRSLALVLVGDFNLPDVCWKYNTAERKQSRRFLECVEDNFLTQLVXEPAREGAPLDLLFVNREGLVGDVMVGGRLGHSDHEMIEFSILGEVRRGVSRTATLDFRRADFGLFRRLVDRVPWEAVLKGKGVQEGWTFFKKEILKAQEQAVPMCRKTSRRGRRPAWLNRELWLELREKKRVYDLWKKGQATQEDYKDVVRLCREKIRRAKAQLELNLATAVKDNKKCFYKYISNKRRAKENLHPLLDAGGNIVTKDEEKAEVLNAFFASVFNSKTSCSXGTQPPELEDRDGEQNEAPIIQGEMVSDLLRHLDTHKSMGPDGIHPRVLRELAEXLTEPLSIIYQQSWLTGEVPXDWRLANVTPIYKKGRKEDPGNYRPVSLTSVPGKVMEQIILSAITRHVQDNQGIRPSQHGFMKGRSCLTNLISFYDKVTRLVDEGKAVDVVYLDFSKAFDTVSHSILLEKLAAHGLDGCTLRWVKNWLDGRAQRVVVNGVTSSWRPVTSGVPQGSVLGPVLFNIFIDDLDEGIECTLSQFADDTKLGGSVDLLEGRKALQRDLDRLDRWAEANCMRFNKAKCRVLHLGHNNPMQRYRLGAEWLESCPAEKDLGVLVDSRLNMSQQCAQVAKKANGILACISNSVASRTRAVIVPLYSALVRPHLESCVQFWAPHYKKDIEVLERVQRRATELXKGLEHKSYEERLRELGXFSLEKRRLRGDLIALYNYLKGGCSQVGVGLFSQVTSDRTRGNGLKLRQGRFRLDIRKNFFTERVVKHWNRLPREVVESPSLEVFKRRVDVALRDMV
>CR1-L1_Tgu_pol#LINE/CR1 1316-4186 [Estrildidae]
EGFKLGLKXEGDAAGLSGSRPKDGKTVLGEKSAAQLRCMXANAHSMGXKQXELEAVVQQQSYDVVAITETXWXDSHSWSTALDGYKLFRRDGKXRRGGGVALYIREALDVXGIETNDDEVESLWVRIKGRANKAXILLGVCYRPPNQDEEVDNLFYKQLNNVSGSSALVLVGDFNLPDICWELNTAEKQQSRKFLECVEDNFLSQLVGKPTRGGTMLDLLFTNGDGLVGDVEVGGRLGHSDHEIIEFSIIGEIRRNINKISTLDFRRADFGLFRRLIQRVPWERALENKGVQERWVCFKAEILRAQEQTVPVCRKMSRRGKRPVWMRNEVLKELRNKKKMYHLFKEGLISQEVFKGAARACRKKIREAKAQFELNLATSVKNNKKSFYKYINGKRKGITNLGSLLDEAGNLVTKDEEKAEMLNAFFASVFSGKAACPQDNCPQGLIGGAREQNGPLVIQEEAVRELLGHLDIYKSMGPDGIHPRVMRELADVLAKPLSIIYQESWLTGEVPDDWKLANVTPIYKKGRKEDPGNYRPVSLTSVPGKIMEQFILSAITQHLQDGQGIRPSQHGFTKGRSCLTNLVSFYDQVTRLVDAGKAVDVVYLDFSKAFDTVSHSTLLEKLAAHGLDGSTLRWVRNWLDGRAQRVVVNGAASSWGPATSGVPQGSVLGPVLFNIFIDDMDEGIESFISKFADDTKLGACVDLLEGRRALQRDLDRLDGWAESNSMKFNKSKCRVLHFGHKNPLQRYRLGTVWLDSVQAERDLGVLVDSRLDMSQQCASVAKKANGILACIRNCVTSRSREVILPLYSALVRPHLECCVQFWAPQFRKDVEMLERVQRRATRLVRGLEHKPYEERLRELGLFSLEKRRLRGDLIALYSFLKGGCRQVGVDLFHRAATGRTRGHSLKLRQGRFRLDIRKKIFTERIIKYWNCLPREVVESPSLDMFKKRLDLALGAIV
>CR1-X3_Pass_pol#LINE/CR1 1361-4333 via tfasty with CR1-X_Tgu_pol, 1 stopcodon [Passeriformes]
DAPXSEGKKSSSTGASGARxQSFKLAWKGERDKTRLASDERWDGVPKLEETSTNGIPQSASRGVGYNAPHLKCFYTNARSMRNKQEELEALVXSQSCDVIGVSETWWNESRDWSAGMEGYRLFRRDRQGRRGGGXALYVRERFDCTALTVSDXVVESLWVRIRGMENKGDVVVGVYYRXPSQDXSTDELFYRQLGEISGSVALALMGDFXFPDINREYRTAVTSKSGKFLKFXGDNFLSQVLSEPTRKDALLDLLFVNREGLVGDVTVGGCLGHSDHEMVEFKIFGVMRKKDSRVAXLDFKRANFKLFRELLSRVPWESAFEGLGVHECWSVFKNRLLEAQEQAIPPCRKSSKRGRRPAWLNRELLVELERKKKLYDLWKRGQASQEDYRAVVRICREKTRKAKAQLELKLASVVSDNKKGFLKYVNSKRRSKENIGPILVEDGHLXNRDEEKAEAFNAFFASVFNNTDRPWAARSPESEDHECGNSDFPFVDTEIVRDQLYQLNVHKSMGPDGIHPRVLKELADVTAGPLSIIYQRSWESGEVPADWKLASVIPIYKKGVREDPGNYRPVSLTSVPGKIMEKIILGTTERHLKNNAIIRHSQHGFTKGKSCLTNLISFYDKVTRLVDEGKAVDVVFLDFSKAFDTVPHSILLDKLSSCGMSGFTVRWVKNWLKGRAQRVVVNGATSGWRPVTSGVPQGSVLGPVLFNIFINDLDAGVECTISKFADDTKLGGAVDSLEGQEALQRDLDRLEHWAMINGMKFNKSKCRILHLGRSNAGHKYKLGEEWLESSPAERDLGVLVGSRLSVSQQCALAAKRANPILGCIKHSITSRSKEVIIPLYSALVRPHLERCVQFWAPQFKKDVKVLECVQRRATKLVKGLEGMSCEERLRTLGLSSLEKRRLRGDLIALYSFLRRGSGEGGAXLFSLVSSDRTRGNGSKLRQGRFRLDIRKHFFTERVVKHWNRLPREVVDAPSLSVFKRHLDNALNNML
>CR1-X_Tgu_gag#LINE/CR1 297-1439  [Taeniopygia guttata]
MVLTRRRAXSPVAAGVTEPAVSEASSQPDLLMADAALQVTGCQECLMPLREAGADKQFFCRRCAVVEELCRQVKELQEEVNRLRSIRANEQEIDRLFSETLQSQDSRESRTSIVVEKQVDSEPCRVISQRTVSQGSVEDEGWKQVTARTRRKVPPPQNLTSRTGTFYSRCEALEPEGQTTDEVGEGPSGIVGPPKTTPPVPRITTSSVXRKRRVVVIGDSLLRGTEGPICRPDPTHREVCCLPGARIRDITGKLSSLVRPSDYYPLLVVQTGSDEITKRSPRAIKRDFRALGRLVEGSGAQVVISSILPVTRNNIDRNRQIHQVNAWLRGWCQRKNFGFVDHGMIYSTPGLLTPDGMHLSQRGKRALAQELAGLVDRALN
>CR1-X_Tgu_pol#LINE/CR1 1364-4331 via tfasty with CR1-X_pol, 1 frameshift. Frameshift looks real enough.  [Taeniopygia guttata]
DAPXSEGKKSSSTGASGARxQSFKLAWKGERDKTRLASDERWDGVPELEETSANGIPQSASXGVGYNAPHLKCFYTNARSMRNKQEELEALAQSQRFDITGISETWWDESCDWSALLDGYRLFRRDRQGRRGGGVALYVIEGXECMELTAGNGTVESLWIRIKGQTNNADVIVGVYYRPPSQDDDADELFFEELRDASKSTALVLMGDFNLPEINWEHHTAGTTRARRFLKXLDDNFMEQVLREPTRKDALLDLLLVNRXDLVSEVEIGGRLGHSDHEAIEFKISVDRRKSASKTSALDMRRADFRLLRELVSKVPWENVFAGAGVHQCWSLFKHHLLRAQEQAIPKCRKSSRRGRRPAWLNRDLLLEIRQKRKVYAQWKQGQVTWEEYRDAARHCREKIRAAKAQLELKLARTVGDNKKSFFKYINGXRQCRNNIGPLQDEDGHLTNRDTDKAEVFNXFFASVFNTDDGPRGSQCPELEDHDCENDQLPVDPEIVRDLLLQLDPYKSMGPDGIHPRILKELADVIAKPLSMIFERSWESGEVPADWKLANVVPIFKKGKKEDPGNYRPVSLTSVPGKVMEKIILGGIEKHLKDNAVIGHSQHGFMRGKSCLSNLISFYDKVTHLADQGKPVDVIFLDFSKAFDTVSHXILLDKMSSTQLDKHIMRWVSNWLTGRAQRVTVNGVTSDWRPVTSGVPQGSILGPVLFNIFINDLDAGLEGILSKFADDTKLGGAVDSLEGREALQRDLDKLEGWAITNRMKFNKXKCRILHLGWGNPGCTDRLGNEXLESSAAERDLGVLVDGKLNMSQQCLAARRANPVLGGIRHSIASRAREGIVPLCSALGRPHLECWGQFWAPQYKKDIKLLESVQRRATKMVKGLEGKPYEERLRSLGLFSLEKRRLRGDLIAVYNFLVRGRGGAGTDLFSVVTSDRTRGNGLKLCQGRFRLDIRKRFFTQRVVGHWNRLPREVVTAPSLTEFKKRLDNALRHMV
>CR1-X_gag#LINE/CR1 42-1159 via tfasty with CR1-C3_gag, 1 frameshift and 1 stopcodon.  [Gallus]
MASTRQKAMSSVSPVASPATGTDAATQTELPREHAAIQVSGCRVCPSFXSVSDGSSEXTCGRCAQXEELLSLVTELREEVGRLRSIRESEKEIDWWNRTLPSLRQTRQPATAQETRDPLPSRHQAEGGDLRGQGEWKQVSARGGRxIPSLPTSPSQVPLYNRYEALELDGQANDDVDEGPSRLEGSPRASQPIPRITTTSVKKKRRVVVIGDSLLRGTEGPICRPDPTHREVCCLPGARVRDVTRKLTSLVRPSDYYPLLVFHVGSDEVAKRSPRAIKRDFRALGRLVKGSGAQVVFSSVLPVAGNNIERNRQTQLINTWLQGWCHRQNFGFLDHGMVYTTPGLLAPDGMHLSQRGKRIFVQELAGLIDRALN
>CR1-X_pol#LINE/CR1 1084-4084 ((merged CR1-X2 3'end with CR1-X as 3' end of latter is weak) via tfasty with CR1-Y_pol, 2 frameshifts and 2 stopcodons. [Gallus]
WDAPFSEGEKDFCAGVSRADRxSFKLDLKGERDKTRLASDKLWDGTPKFEGLRASEILQSAPRGAGYNEAHLKCFYTNARSMRNKQEELEALAQSQSYNIIGISETWWEESCDWCVTMDGSGLFXRDRQGRXGGGVALCVREGLGCTELAVGDDTVESLWVRIKGQANKADVVVGVYYRPPSQDDDTDELFFKELRDTSRSAALVLMGDFNLPDVNWEYHTADTNRSRRFLKHLDDNFLVQVLREPTRKGALLDLLLVNREGLVGEVAIGGRLGHSDHEVVEFKIFGDRRKTATKTSTLDMGRADFRLLRELVSKVPWETAFEGIGVHQCWSLFKYHLLRAQEQAIPKCRKSSRRGRRPAWLSRDLLLELRRKKKVYGHWKRGRATWEDYRDAVRHCREKIRAAKAQLELKLASTVGDNKKGFLKYVNSKRRTRDNIGPLLDEDGHLTNRDADKAETFNAFFASVFNTDDGLWDPRSPELEDRDCGNDKLPANPELVRDLLLXLDAYKSMGPDGIHPRVLKELADVIARPLSIIFQRSWESGEVPVDWKLANIVPVFKKGKKEDPGNYRPVSLTSVPGKIMEKIILGVTEKHLKDNAVIGHSQHGFTRGKSCLTNLISFYDKVTHLVDQGKPVDVIFLDFSKAFDTVSHSILLDKMSSIQLDKNIMRWVNNWLMGRAQRVIVNGVTSGWRPVTSGVPQGSILGPVLFNVFINDLDTGLEGILSKFADDTKLGGAVDSLEGREALQRDLDKLEGWAITNRMKFNKSKCRILHLGRGNPGYMYRLGDERLESSPAERDLGVLADGKLNVSQQCALAAQRANRTLGCTRPSTASRAREGIVPLCSALVRPHLEHCVQFWAPQYKKDIKLLESVQRRATKMVKGLEGKTYEERLRSLGLFSPEQRSxGEASWRLQLLTGSGGAALSSALCDSDRTRGNGMELRQGRVRLGVRKRFFTRGWWAWNRLPRAVVTAPSLPEFKKHLDNALRHRVWNFGWSCVEPGVGLDDPCGPFQLGIFYDSMIL
>CR1-Y4_pol#LINE/CR1 fragment; 3'end 2-1141 [Gallus]
AFYDVITGWVDGGRAVDVVYLDFSKAFDTVSHNILVMKLRKCGIDEWTVRWIENWLTGRAQRVVISGAESSWRPVTSGVPQGSVLGPVLFNIFISDLDEGIESTLSKFADDTKLGGVADTPEGCAAIQQDLDRLESWAERNLMRFNKSKCRVLHLGRNNRMHQYRLGADLLERSSAEKDLGVLVDNRLAMSQQCALVAKKANGILGCIKKSVASRSREVILPLYSALVRPHLEYCVQFWAPQFKKDRXLLERVQRRATKMMRGLEHLLYEERLRDLGLFSLEKRRLRGDLINAYKYLKGWESSGWGQALFSGAQRQDKGQWAXTGTQEVPYEHEEELLYCEGDGALEQAAQRGCGVSFSGDIQDPPGRLPVRPAVGNLL
>CR1-Y_gag#LINE/CR1 275-1455 via tfasty with CR1-C3_gag, 1 frameshift and 1 stopcodon.  [Gallus]
MVGTRRSGRAEAATQTEXTQPLWADVCTQVDNPXSEAAVQTVDCGELRNLEVPLGPEGGEGCHGCRCVLLKELLEQMARLQREISSLRGSRESLRETDRRxCEPTPTADTQXPPKSLQVEVANPAAHLQDRXLDSPREERGWTLVSARSRRRRLPPAPTVPPTPAVSPAVSLSNRFEALGPDRDEGLESSPNPCPEKHIENTGSNKHRERGRSGHCINTSATKKGRRVLVIGDSLLGGTEAPICRPDNLSREVCCLPGARVRDIRKALPQLIKPEDYYPFIVIQAGSRDAAMRKLKNVKKDFASLGKMLKGSGVQVVFSSVLPMGSWDPGRXRRTCQVNDWLRGWCLDQGFGYFDLGQAFEKPGMWAPDGLRLSKWGTSVLGSKLSGLITRALN
>CR1-Y_pol#LINE/CR1 1380-4427 [Gallus]
WTPTEQVGHKCSGEQALWIDYQGFKLGSKGEGRGVRCDREGLRDVVTVGDCREKPLSCPIGSCEGSSEKVTLPIPRPKSSCVPLGVTAPAASLKCLYTNARSMGNKQDELEICVRSQGHDLIAVTETWWDSSHDWNAVMEGYVLFRKDRLGKRGGGVALYVREQLECIELHLGEGEERVESLWVRIKGRASMGDTVVGVYYRPPDQEXEVDEAFYKQLEVASQSRALVLMGDFNHPDICWVSNTARHTRSRRFLQCVEDNFLTQVVEEPTRRGVLLDLVLTNRDGLVRDVKAGGSLGCSDHEMVEFKILXGRSKAKSRIATLDFXRANFDLFXDLLGGIPWARVLEGKGARESWXAFKQHFFQAQDRCIPKSRKSGKGGRRPAWMSKELMDKIKGKKKVYEMWKKGLSXWEEYRSVVRACRDATRKAKAHLELXLAKEIKDNKKGFFKYVNSKRKTRENVGPLLNEGGVLVTGDAEKAEMLNAFFASVFTXKTPPRXSRTLEVRERVWEMESFPLVEEGXVRERLGGINVHKSMGPDGMHPRVLRELAEVIAEPLSIIFXRSWRTGEVPEDWRIANVTPVFKKGKKEDPGNYRPVSLTSVPGKVMEQLVLDAISKQLEEKKVIRSSQHGFTKGKSCSTNLVAFYDGITSWVDGGRAVDVVYLDFSKAFDTVSHDILIMKLRKCGIDEWTVRWVENWLTGRAQRVVIGGAESGWRPVTSGVPQGSVLGPVLFNIFIDDLDEGIVSTLSKYADDTKLGGVADTPEGCAAIQQDLDRLESWAAXNQMRFNKSKCRVLHLGRNNRKYQYRLGHDLLERSSAEKDLGVLVDDRLAMSQQCALVAKKANGILGCIKRSVASRSREVILPLYSALVRPHLEYCIQFWAPRYKKDRDLLERVQRRATKMIKGLEHLPYEERLSDLGLFSLEKRRLRGDLINVYKYLKCGSQRDMANLFSAVCGDRTRGNGHKLEHRKFRTNMRRNFFTVRVTEHWNRLPREVVDSPSLEIFKTRLDAYLCSLL
>CR1-Z1_Pass_pol#LINE/CR1 16-2685 via tfasty with CR1-E_pol, 2 stopcodons [Passeriformes]
IVGITETWWDNSRDWRTAMDGCRLFCKDRQGRRGGGVALYVKENLERVEVNYGDYGSPIECLWVKIRXVVSKGDLRVGICYxPPNQXDKANEAIFGSLKQASGQQNLVLMGXFNYPDICWKNNTAAHVSSIKFLECVEDCFLIKMLDVPTRNEALLDLLLTNQENLLCNISVSDSLGCSDHSIVEFGILLSTLKVSTKTKVLDFRRANFSSLRAQLGGIPWEASMEDKGASECWEFFKNALLEAQXQFIPFKGKGSRRSKRPPWLNCELLSLLKTKREAYQRWKSGxIPIENYKGIARACRDAVRKAKAQLELKLARDVKNHKKGFFRYVNNKQKQKENTGPLLNRRGELVTNNAEKAEVLNTFFTSVFTSTAGPQALGTKIQVDANTDPPSVKEELVCELLQELDPYKSMGPDNIHPRVLRELADVVARPLSIIFEKLWRSGDVPEDWKKANVTPIYKKGLKEDPGNYRPISLTSVPGKVTERILLGAITSQMKHVIGKSQHGFTKGKSCLTNLIAFYDKVTCSVDVGRAVDIVYLDFSKAFDTVSHSLLLEKPMRYGLDKWSVRWVGNWLTGXTQRVVVNSSFSNWQPVTSGVPQGSILGPTLFNIFISDLXDGIKCTLTKFADDTKLSGEVDTSEGRATLQEDLDRLEEWANKNLMKFNKDKCKVLHLGKHNPGVQHRLGSTRLGSSSVERDLGVLVDNKLNMSEQCAAAAKKANRMLGCINKGITSRDKEVIIPLYSALVRPHLEYCVQFWSPLYKKDVDRLERVQRRATKMIKGLGSLPCEERLRELGLFSLEKRRLRGDLITMFQYLKGGYKEDGDSLFTRSHMEKTRGNGYKLLLGRFRLDTRGKFFTMRTISHWNNLPREVVDSPTLDTFKIRLDRVLGHLV
>CR1X_SP_pol#LINE/CR1 432-3634 via tfasty with BfCR1_pol, 2 frameshifts. [Strongylocentrotus purpuratus]
MCFMWEKCGLEVKGIQCEGECEQWFHAECINFNSTDYSALGTSSIVWICNICGVHNISRSDLLLPSAFSSNLSSQNLSFDHTDIETCTTNPDSKDEGESDDSLCLGSPKFSSSPRTSKKKPNNPTKPKAKVLTILNVNCQSIRAKKQSFAILIHQHNPDVVIGTESWLTEDIRSSEVFPTDHYNIERRDRPNDPHGGVFLAIRKDLLASREIELETDCELIWCKISMPGAKTLHVAAFYRPHEGDEMSLTELERSLSRLSPTHSVVIGGDFNLPGWDWRNQQVGNCRYPNLHRRLGSLLDDHGLTQVVTEPTRYQNTLDLLLVSNPTVVNEVTVVPGVSDHDCPLVKLDVSQPYQMRRKVLLYSKAQWEKFGESMEAVRDEIEAKVTYASVNELWLIFKTGIEKGINDFIPQKLTPHKANLPWVTNGIRRLIKKRDRLSNECKHLRKREGLIPYALEEQLRDLKRTLQFALRKAYWNYVESIFTVEDDDEGPGKYNCMKRFWQFIKNNRTDSAGIAELKSDGVLFSEPAEKADALNRQFKKVFTQEIPIPPHLLPDTSEHESMPDIVITVKGIEMMLKKLKPHKAPGPDGITPRILKQLSRVIAPILRIIYRLSYDTGEIPDDWHKANVVPVYKKGDRTDPSNYRPISLTCICCKMMEHILASSIMRHGDEKDILHPLQHGFRPKRSCEQQLLGFVSDLHKNMELGLQTDVLVMDFSKAFDKVGHQRLMHKLDHYGVRGKSNRWITNFLHHRTQQVVLEGHASPEVDVDSGVPQGSVLGPSLFLYYINDLPDKLTSPVRLFADDAIIYLAIKGRQDPLELQEDLNRLAEWSSEWMMELNTDKCKTITVSRKKSQIRHQYILNNTPLEAVSSTKYLGITSTSDLKWDKHMTSICQKANNTLAFLRRNLRINSPKLKSTAYKALVRPLIEYSSTVWDPSSANHIHQIEMVQRRAARFTLNRYNTSSVTSMLQQLDWTTLKQRRENYRLVMMYKLHNNLVALDKASYINPVTRPSRTAHAHSYQVPRSRTEQHKQSFFPRTVRSWNNLPSETVCASSVNAFRQCLTGDSN
>CR1_1b_Xt_pol#LINE/CR1 588-4582 via tfasty with CR1-D_pol, 1 frameshift and 1 stopcodon [Xenopus tropicalis]
MSGSNIEGLTQCTACHMYAVVEQQFQSAYLCCGCERIATLEARVRALEEHVATLRSINNLERGLLLTEQELAGSDSMGGGEQRKDDRAVSWVTVRKSSVGKRKREAAPGFAHPNRFARLCEEDGSVNSGLAVLDEADLSNSRETSFSSSGGEESRARPKQMVVIGDSIIRKVDRVICQADRFNRTVCCLPGARVRHVVDRVDTLLGGAGHDPAVLVHIGTNDKMNGRWGTLKSEFRDLGSKIKQRSSNVIFSEILPVPRASLGRQRELRELNAWLKSWCRKEGFGFLEHWADFSLGYNLYSRDGLPPQWKGVCCARGENGxEVGGVFKLDKGGVGELEFYGKISVDGAGGLAKGCGGGVRGAYSLSDKELPLQGKQSHICLSSNSPLANVNIRGRSSNLRCMLANARSLSGKLGELQAIACIENYDLIGITETWWDDKCDWAANLNGYTLFRRDREIKKGGGVCLYVKSDLKPCNKDITNENVESLWVEISVGLKVTKKMIIGVCYKPPRIDEGDEAQLLLQMEEASKLGQVVIMGDFNYPDIDWSNGVAKSEKASRFVNMLNDNFLFQAVQEPTRNDSILDLVXSNNNELISNICVGEHLGNSDHNMVSFEIMLQRQLYKGVTKTLNFRRADFASIRASLQCVNWERLFMGLDTEGKWNIFKTLLCRYTQQYIPLVSKERHRKAKPLWLNKSVSVEVGKKKRAFRAFKLAGTAETFIRYKEANKACKKAIRQAKIEMERDIAARSKKNPKLFFNYVNSKKMKQEGVGTLLSRGGKLVDENGEKAEILNSYFSSVYTSEEPDNEGFPXNMPSSSNLATDAWVTREEIQKRLEHVKVNKGPGPDGIHPRVLNELSAVIAKPLHLIFQDSLRSGMVPRDWRIANVVPLFKKGSRSQPENYRPVSLTSVVGKLLEGVIRDRVLEYIAVHNTISLCQHGFMRNRSCQTNLVAFYEEVSRNLDAGMAVDVIYLDFAKAFDTVPHRRLMIKLRNIGLEHNICNWIENWLKDRVQRVVVNGTFSNWTSVVSGVPQGSVLGPLLFNLFINDLEVGIDSTVSIFADDTKLCKTISSMQDAAALQSDLTKLENWAANWKMRFNVDKCKVMHFGRNNINANYLLNGSVLGXSLMEKDLGVFVDNKLSNSRQCHSVATKANKVLSCIKKGIDSRDENIILPLYRSLVRPHLEYAVQFWAPVLKKDINELERVQRRATKLVKGMEDLNYEVRLSRLGLFSLEKRRLRGDMITLYKYIRGDYRQMGDVLFSHKNNQRTRGHPFRLEERSFHLKQRRWFFTVRAVRLWNALPXDVVMADSVNAFKRGLDEFLXNQNIQGYCDTNIYS
>CR1_Ele1_gag#LINE/CR1 1-726  [Aedes aegypti]
MRNNQLFWFCPSCATLMKDMRLRNTARAAYEVGQGHALNSHSDIMTNLKTEIMDELKAEIRNNFAKLINSSSCTPKSSKRVGIDPRFTRSRRLFSTAANPVSKNQPPLLLGTGSTPSPSIEIGTVPPNQPKFWLYLSRIAKDVSADQVCALAKKRLGTDDVQVVRLVAKGRDINTLSFVSFKIGMSLELKFKALSTSTWPKGVVYREFTNNNNREENFWRPGHVAASDDPLSLPTEEVVLME
>CR1_Ele1_pol#LINE/CR1 645-4727  [Aedes aegypti]
RKFLAPRTCGCIRRSAEPSNRRSGSNGISDDPGRTLPLSLKEAPIPLTAVEPLPPATSSRPGPACELEDGVFRSSFPGKYAYPLRTSPAVPSVVFSVSSPTQTCSAFLNRTPGRKFAASLKEASISLTAVEPLSPSASSRPGPACELEDEVLRTPTSGKYALHLRTSYAVSPDAFSATSTTQTCSSYLDRIPGRKFAASLKEASISLTAVEPLPPSASSRPGPACELEDGVFRNRISGKYDINTSNSLPEVPVVFSVLEELSGLASNSDSPGPSAVPAGNNHRSRIPEYALIDSRMYDLWSSANGDAQMSEAGPSSMFSVDGALLEFARRSDILDCWNGSRDHFTLPLPDVMDLRRVDEASDSRGPPGAEVMTQPELGNTLRRPKTDSKIRRVLTDSQRTSHDVMIYYQNAGGMNCDINSYLLATSDDCFDIIVLTETWLDSRTFSSQVFGPSYEVFRCDRSARNSTKSVGGGVLVAVKKKLKSKPIDNDSWASIEQVWVKIEFSGRNLFLCGIYIPPDRTRDMASIETHNQSIIHISAAANPEDEIVVVGDFNLPGISWQTCGNGFMHPNLGRSSIHAAASRLLDCYSTATLRQINNVLNENNRCLDLCFVSARDVAPLITSAPVALVKNVAHHRPLIIALQHNEIRHRESISPVYYDFRNADQQSIAEFLSSVDWLHVLDSDDVDTAALTLSHVIEHAIERHVPKKVHSSSGPPWQTRELRHLKTSKRAALRLYSKHRTPSLRDHYARVNNAYKNASRRCYKRYQQQVQLNLKSKPKSFWRYVNKQRKQSGLPSVMKLDEEVASDWYDICTLFAKKFSSVFCEEELSEEHVANVANNVPLFGETFNMLTVDDNMIIEAAARLKSSLNPGPDGIPSVLLKAHIVNLLVPIRHVFNLSLNSGRFPAAWKTATMFPVHKKGDRKDVNNYRGISALCCISKLFELIVMKPMLFHCKHYISEDQHGFVSGRSTTTNLLCLTSHIADSFADRAQTDVIYTDLTAAFDKINHAITVAKLERLGVGGLMLRWFSSYLTDRRLTVELAGFSSESFTATSGVPQGSHLGPLIFLLYFNDVNTVIKGPRLSYADDLKLFLRVRTIADAVALQHDLDVFVVWCDMNRLTVNPEKCSIISFSRKLQPILFCYQLKGKVLQRVEDVKDLGVILDAQLTFKHHLSYVIEKASRTLGFIFRIAKDFTDPYCLKSLYCSLVRATLEYCSAVWHPYYRNGVERIESVQRRFIRYALRRLPWRDPFRLPSYQSRCQLIQLESLQTRRDVNRAMVVADLLSGRIDCPALLESINASAHSRTLRNNAMLRLPLRRTNYGQNSAMVGLQRVFNRVAEGFDFHLSRQVIRRNYVEILSRLSV
>CR1_Ele2_gag#LINE/CR1 226-1056  [Aedes aegypti]
MESICFACTNTVKKEDEILCNGFCRSSFHLQCVHQSEEIRNTIADCSQLYWMCKACSKMMSNANFRQAISSTNNVISLMTDEYSKALDELRQEIANNTFKINTILQRTPLPSTPHIPRSQLSVPSRKRPRLIADDSSHHDNTSVGTRELAPDESIPLAAPRKADQFWLYLSGFDPQATVPQIEKLVKNNLNTDKSFDIVKLVPKGKTLDELTFVSFKVGMDLQLKDTALSGSSWQKGIIFRQFDFNHSTSTRQTFRFRPSPRDDHSQQSPNITSYHQ
>CR1_Ele2_pol#LINE/CR1 1052-3952  [Aedes aegypti]
INERSSAQLRNTQHTTTPRETITLYYQNVRGLRTKTNDVFLALSESDYDIIAFTETWLNNDIHNSELTHNFTIYRCDRNASNSCFQRGGGVLIGVRNCLQSTSLTIAECECLEQIVVRITLPDFDLFVCAIYLPPNSDTILYEQHSACVQHLLGLAGDHGRVVVIGDYNLPHLCWMFDEEISSFLPVNASSEQELALIESVVGCGLHQINDLTNANRRLLDLAFVNDDKYVELLEPPQPLMKMDNHHKPFVLKFESTMRSECDALDPFDFDFKQCDFSSLNEQIAAVEWNEYLNGCHIDEAVATFYDQVYGILRETVPLNQRRRGIGKRQPWWNNELQRLRNRLRKARKRYFRSKNEQHKVELRDLESEYNSLHARCFSCYIRRTEENIKHDPKSFWSFVRSRKQTNSIPQHVFYKDVNAETPSDSANLFSSFFRSVLSNNRSPSSEEYLSSLPRYDLNVAVFNFSTRDVCCKLRGIDDSKTAGPDRLPPLFVKNCADSLTVPATILFNRSLSEGTFPCVWKNAAITPIHKSGNMNNVENYRGISILSCLPKAFESLIHDSLYPHVQHIISEFQHGFVKKRSTTSNLMSYVSSLVKAMEKRQQIDAVYIDFTKAFDRVPHSLSVKKLDKMGLPSWLTRWILSYLTERSAHVRIAGISSDPFEITSGVPQGSHLGPLLFVLFVNDLCEVIKSQKLMFADDLKLFRVVSSLTDCCAVQADIDALVRWCMLNGMEVNVQKCCVITFSRKRNVIDFGYRMSATNITRVNTVKDLGVLLDSKLNFAQHIAATTAKAYAVLGFIKRNTQEFEDVYCLKSLYCSLVRSILEYGVLVWAPYHTTQSNRIERIQRNFIRYALRRLPWTDPVRLPPYEHRCALVHLETLACRRVLLQRLFVFDILSNNVDCSVLLTNINLNVPARTTRQADFLRFPVHRTLFGQNNPFYVCCRRFNEVSDRFDFNMSKLTFKRSISS
>CR1_Ele3_gag#LINE/CR1 751-1578  [Aedes aegypti]
MAASEVCHSCARGMTAVEVVCGGFCKATFHFSCANITEDLYKEIRGKPAIFWMCNGCRELMSNARFKNALSSMNAAAIEVNDTYLKLIEEMKSEIKDSLIAEIRQEIKGGFNQLSPAVLSPLPRYFKFGHANSPKRRRDDEAVASDQPSKILRGTGPSTADIPSIHMDRTSDKFWVYLSKICPEVSETDIERLAKDCLHTDEVVVKSLIPRGRSLSTLSFVSFKVGVSLELKPKAMDPVSWPQGIEFREFIEDEGRKTQHFWKPVLSVDSGPMTSS
>CR1_Ele3_pol#LINE/CR1 1578-4493  [Aedes aegypti]
VEPTESSNIPDVLPALSDRGLPRSQLTVYYQNVRGLRTKTNALLQQLLSCDFDVVIFTETWLHTDISNAELTSNYIIYRCDRSSRTSVLRRGGGVLIAVKSELNCKAVHLVDCENLEQVAVHITLPHKSLFLCCIYVRPCSHPDIYIKHAESVQELLDKATPFDTTIIVGDYNLPNLSWDYDDDVQGFLPRNASAEQELVVVDSLLSTGLKQINDLVNDNGKLLDLVFVSDTESMELFEPPSAMLKVDRHHKPLVLKLDSQSPPLAPASERSEYNFARCDFNSINERLATLDWMQLLNLPTVDAAVSAFYDNINQIIRETVPLKTRRPTKLFNQPWWTPQLRNLRNRLRKARKRYFRCRSLENKCNVQLAEAEYASLHEIRFRDHIKNIQTGCKENPISFWSFVNARRRSSGIPVDVSYCDRSSSTDTTSANLFAEFFQSVFEITESPAPQQYVDQLPSFNIHLPQPEFSLDIVYRALSSVDASKGPGPDRLSPVFIKNCAASLATPIMCIFNRSLQEGVFPDVWKLASITPIFKSGNLHRVDNYRPISILNCLSKVFERLLHDMLYPAVQPMISEFQHGFMKKRSTLSNLMTFTSSVVENVEKRQQVDAVYVDLSKAFDKVPHDLAVEKLSRLGLPPWIVNWLKSYLSSRKAFVKIRDSSSNVFEITSGVPQGSHLGPLIFILFINDVCDHLRSSKLLFADDLKIYRVVKSTLDCCVLQADIEKLLSWCQINGMQVNASKCKVITYTRGQSPIRFDYTMNHAPLERVYSIKDLGIILDSKLRFTEHISKTIAKASSMLGFMCRNAADFDDVYALKTLYCSLVRSVLEYGVQIWAPHHAVHELRIERIQKRFVRFALRRLPWTNPDSLPAYEHRCALIGLETLSKRRTSLQRLFIFDMINHHIDCNSVLQKINIHAPLRQLRNTNFLWTPAHRTAYGYNNPLDRSCRLFNGVYDLFDFNISRLVFKNRIKNI
>CR1_Ele4_gag#LINE/CR1 726-1577  [Aedes aegypti]
MLSVCEQCANEFTGTPVKCMGFCSSLFCKKCSGMTDETQRLIDTNNHLVWMCFACCNILSKSRFHKSVASVNAANEKIIDALKTEIKDSILQDIRTEIRDNFKTLVEAVPSTPLAIQPPPFRPSSRSKRQRDTDVDDDSTNGRPSKQPCATGTRYSEVGSLAINPTSATPEFWLYLSGIQPDVEEDQVRHMVQESLATNDLKVVKLIPRNRDLRTLSFVSFKVGVSADLREKAMSADTWPRGIRFREFEDHSLTRQGFWRPTSVPVITVPQTIIIPDPQQPSMG
>CR1_Ele4_pol#LINE/CR1 1580-4465  [Aedes aegypti]
MLNSDTEPPRTSSVLSSFLVYYQNVRGLRTKTSDLFVQLSDCDYEVLAFTETWLHPGIANSELSSAYNLYRCDRNASTSNLQRGGGVMIAVKKHHRCEIVSFGQGFGLEQVAVRIKLPSKSVYVCCIYISPNSDSSIYDQHASCIREVCEKASINDTIVLLGDYNLPHLIWSYDDEINAYLPTNASSESEITLTESVLSVGLFQVLNVLNQNGRLLDLAFVNDAHSVEVLEPPMPLLKVDQHHKPILLNFHLPLKNDDTDYYDIRLDFRHYDVSAVCRSITAINWNVTLNENSVDDAVIEFYNLIHDIIREHVPRKNNQAARSFNQPWWNDDLRHFRNRLRKIRKRYFKHRSEENWITLQSMEREYSSMRRTAFREYISGLEHKAKSDPSSFWKFVKNQRKPNSVPREISFQNEHASSATDSANLLAAFFKSVFNENSTQVTHEVLDGVLSYDLRMPPMEVTVDEVYQRLSDLDTTKGPGPDEIPPLFIKQCAESLALPLSILFNRSLTNRVFPALWKEASITPIHKSGNLTNAENYRGISILSCFSKILECFFHEALYRAVLPVIPEVQHGFVKNRSTTTNLMTFVTSVRTKMEKNRQVDAVYIDFAKAFDRVPHGLLIAKLQKMGLPEWATSWLRSYLTARWAFVKIDGIKSSRFRIPSGVPQGSHLGPLLFILFTADLCGLIQSEKLFFADDLKIFRAILSRIDCCIIQRDLDTIVKWCHANGMEVNADKCKCISFSRSRSPMQQNYEMASQTLERVSSIKDLGVIVDSRMNFNEHIATTTAKAFSLLGFVRRITKSFRDVYAMKSIYCAVVRSVLEYAVQVWAPYHQVQADRIERVQRSFVRYVLRQLPWNDPIRLPPYDHRCRLIGLDTLASRRVMAQRIFCFDLLTGNIDCANLLRQMNFHAPVRRLRQNTLFYLPTHRTLYGHNNPLHSCCRYFNEVHDKFDFNITKTTFKSRIR
>CR1_Ele5_gag#LINE/CR1 182-931  [Aedes aegypti]
MEQTVVIKPKVSQDVNTTKSEIRHKLDPVAHSVKDVFYSNNGNVAIRCDSHSAAMKLLDSAKSTMSANYEIDIQKALRPRLKIVGFSTDFDADSFLTKFRKQNDLPDCSFIQIVRFTKSKRDKENPMSVILEVDALSFKQLIKAKIAYVGWERCPVSESIDVLRCYRCSEFGHIASICTKPLCCPKCTECHEVSECTSEYEKCINCTIVNKDRKLPADQQLEVNHCSWSTECPMYLKRLNKSRQRIDYSS
>CR1_Ele5_pol#LINE/CR1 935-4453  [Aedes aegypti]
QYISEGDPHGCTLVAIQLPSGKCVNSICTAEAIPDTALRSSKIDFQTKFPASFDIPTTCSPIGNTVDNSPSGSNYLLNDLTGSAHPKLFPTDESSLDGFSYQLNELAGPGKDNTCICPAEAGNDATRTLIRPVLQINSVVPTDLDLLSSGANFVSSGKHASSICPAEAGEQSTPNLTHSTLQTCQASSCSAISTDLHQLTEPHNTNVTSANRITVYYQNIRGLRTKIDDFFLAAYESSYDVIVITETWLNDQIFSPQLFGDRFTVYRTDRNSSTSSKKRGGGVLIAVTNRLSSALPSIAIDSTVEHLWVKIFVADNVVAVGAVYLSPEIANDATVIEKHLDSALNITNSLKPGDCHLLLGDFNQSSIIWTHSSSGYLYADPRDSHFSPGSCSLLDGFSQLDMKQLNYIEHHRGRILDLIFANSDIASLCSVQRANDPLLEEDPYHPALVTSLTCNCPVLFDEIETPNEFDFQKANFSTLDYDISHIDWTPLLDASDVDGSVDFFTYTLKQLFINNVPVPRPRRKPPWSNNHLRNLKRHRSNALRKYTNLKTTESKRHFNIASNRYRSYNRFLHARYTNRIESNLKHNPKKFWSFMNAKRKEAGLPTSVFLNEEVADSCDDMCNLFAKHFSDVFRKESVDIHRINNALADVPLNALNMEYFQFSENEVLNALNKLKSSSTAGPDGIPSIVLKKCASSLCAALTIICNRSIAESRFPTKWKESIMFPVYKKGDKRDVKNYRGITSLCAGSKLLEILVSDVLLSASKSYISPDQHGFFPGRSSETNLVQFTSFCLRNIEEGNQVDAVYTDLKSAFDLVDHLILIAKMERLGAPSFFTRWLESYLRNRRLSVKIRAVQSYYFTNNSGVPQGSNLGPLLFSIFINDVCCLLPAGFRLVYADDLKIYLVVKNHEDCIELQRLVDLFEDWCIRNHLVISAQKCTVISFNRKKCPITWDYQICGTLLSRVTVVKDLGVLLDTNLSFRNHFSNIIARANRNLGFIMRSTGDFSDPFTLRSLYYSLVRSTLEYACVVWSPYTNVWILRIEAIQAKFTRYALRLLPWNDIANMPAYEIRCRLLGMESLRNRRNSLRALFAGKLLLAVIDAPNILERLNINAPSVSLRSRDPLRPDFRRTDYGINEPITALCREFNKVYHLFDYSISASVFKSRLRRFSLHPESE
>CR1_Ele6_gag#LINE/CR1 266-1654  [Aedes aegypti]
MTSVICSACTQSIGSESDRVYCFGGCDQILHTRCSELSSSAMAAARGNVALKYFCFGCRKQQTCINEINKKCTDLLNRVNVISDLVSKHDTAFENLDKQLCEKVEAMLLPRLLSAIHATKSSASDCNTCVVASNDSYAAVVSALPTVNVPNTANTNKQIAMNNSNCTPVISDLGGGLLRSGKRRNLDPSRKERATMSTESATPCTPRKSATVARIEQTVLLRPKRKQTSEITQKDVHRKLDPAEFLVKSAFFKEDGEAVIRCETSENALKFVNAATKMLSEKYDISVQKPLKPRIKIFGISEDFTAEEILTKLRKQNNLPESSDVKIVKLQKAKSRKSNPVDAVLEVDAKSFDYLIKLERVNIGWNRCRAMEMVNVLRCYNCSAYGHKASSCSNSVCCPRCSGDHNADECEAEYEKCANCERLNKDRKSKNDELLDTNHSAWGTDCPIYQRRYKLAKERIDYS
>CR1_Ele6_pol#LINE/CR1 1664-5149  [Aedes aegypti]
MDRSMKRQEQHNACSGNLADSICLAEVTVDTAPKSNDGHRFQKPSTIRIYHDLPLDDQQGPSQRVKIIDQWNQQTVCPGNLAGSICLAEVTVDTAPHSNCGDRFQINSTRPYQCTTIIDEQERHHPVAHQVNNYDEQHSARAGKSMLSICRAEAWQDTTHSSRDFHGFQDTNQQARTDEINNCETNTPDVSPAAAHASSSSPSDHSITFYYQNVRGLRTIIEDFYLTVMDAEYDIVVLTETWLNSEIQSPQLFGQLYTVYRQDRDSSRCGKSRGGGVLIAVNNRLASSRIDIARIDTIEHLWIKIEVSASTTYVGVVYIPPDVASDSGTISTLVNSLETIVNASGLHDSHMLFGDFNQPSLTWCLSSGHGLIVDHQLSTTTVTSAILLDGLSLLNMTQVNPFKNALNRTLDLLLVNDDIAEKCILYDPPEPLTRVDPHHPPFLVVYHCQSVTQFRDIVELAAYDFNRTDFEELNQAFQITDWTPLYAAENVNAALDYFVSTLTELFRLHVPLRRSPRKPVWSNGTLRRLKRQRAAALRKYSRHRNPFTRRSFIVASTKYKCYNRTLYERHARRTQTNLRQNPKRFWSFVNEKRKECGLPTSMFYENDSSDSLDGICNLFAKHFSSVFDDTTATTEQLDDAIRYVPENILDFHTCDFSANDILSALRKIKSSTAVGPDGIPTIVLKKCSNALCEPLRYICNSSIRQSTFPNRWKDSVMFPVFKKGDKRDVANYRGITSLCAGSKLLETLVSQDLLRASKAYISPDQHGFYPRRSISTNLVQFTSFCITNMGEGAQIDTVYTDLKAAFDRVNHQLLLRKIHRLGSPTDFVQWLKSYLVNRQLCVKLGNCQSVAFTNHSGVPQGSNLGPLLFSLYFNDVCLVIPAGCRLVYADDLKIFLIVKSADDCRQLQRLLDLFSQWCEANFMCISVGKCAVISFSRCRNLLIWPYTIRGNAIERVASFRDLGVILDSQLTFREHYSYIIAKANRSLGFIFRLSKEFTDPHCLKALYCSLVRSTLETASTVWSPYHDVWIKRIESIQAKFIRYALRFLPWSNPDELPPYENRCRLLELDTLEKRRKMMIAVFAGKIITANIDAPFILSRINLNVVPRPLRTRNFLRLDFQRTDYAQHEPIRRMCEVFNCVYDLFDFNMSIDVFRNRLYSRNL
>CR1_Ele7_gag#LINE/CR1 377-1207  [Aedes aegypti]
MAKNCGKCSKAINGIDVVICRGYCGGFFHLNECSGVTRAMQSYFVSNKKNLFWLCDNCAELFENSHFRMISNQVDEKSPLTSLTTAISELRTEIKQLHAKPAASPAVTPRWSTIVQKRGTKRPRIIEPNAHAQDSCRVGCKKAQENGNVVSVPICKPEAENLFWLYLSKIRPDVTVEAVRDMTKANLGIEDDPKVIKLVPKDRDIESLSFVSFKIGLDPSLEDRALNPDNWPEGLLFREFVDYGAPKFRPPLKFNTQSPLTLHQTTISPITPVMDLS
>CR1_Ele7_pol#LINE/CR1 1204-5049  [Aedes aegypti]
ELIFVIPGRNCLSISEASDSPNTVPLFLPSFISRPGPVFGCGDEVFQAISAGKYSCKLNISLPLKCPTSSSLTSMHIYSCSHLRHTNFSSMRNQAVDSIHHQASSLIKIVSTFLELPGCTPASLKEALNPLAAVELFLPAINSHPGPVGEYGEGVFRTSTAGKYTCNKDISSPVTSIVSSQPISSFMRTTSNFYDSPVPTRTISTFDQLPGCMPASLMEAPDPLITVENFPPASCSHSGPVYEFGEGVFQPVLAGKYFHESTISLPDENASSSVLIRNDDNILLPRPTAHPVPVGPSPSSVFPIGNSTVRVLEGAGHENATETSKILMYYQNLGGMNSSLAEYQLAISDGCYDIYAISETWLNGNTSSNQLFDDRYSVFRQDRSPSNSDKSSGGGVLLAVRSKFKSRRLVHPNIASVEQLWVAVTTTDATLYLCVIYFPPDRVNDNLLIENHIDSLNWIVSQLGPRDNIIVLGDFNLSAISWQQDSNGSFFPTTSRSSIGSASRALLDSYSTAGLKQKVGVVNENNRMLDLCFVSEELQNDCKIMQAPSPLVKTCKHHPALLMEIAVNPQLCFRNTLEDVRYDFGKADFNGMNNFLTSLDWDDILHNSDANLAASTLSGILLYAIGQFVPIKPSFKPPKPIWSNPELKQLKRAKQAALRRHSKYRTDSTREMYVQANTEYKRLNDHLYNAHQDNLQRRLKHNPKSFWNYVNDQRKESGLPSTMSNGTFEADSTAGIADLFRTQFSSVFTDELVDPCVVDEATRIVPQLPISVQRFYVTDGMVKSAGKKLKSSTGSGPDGIPSLVLKRCVDSLASPLASIFNLSLSTGIFPNCWKESYVFPVFKKGCKRLVSNYRGIAALSATSKLFELIVLRELVHSYAHYISPQQHGFMAKRSTTTNLASFTSFVIRQIEDGQQVDAIYTDLSAAFDKMNHQIALAKFDKLGMDTQILSWLHSYLVDRSMSVKIGDHVSLPFSVCSGVPQGSHIGPFLFLLYMNDVNFVLNCLKLSYADDLKLYYTIKKAEDALFLQQELEVFAEWCRINRMVLNVTKCSVISFGRKHALHHFGYNLNGVQLQRETTIKDLGILIDSKLTFKDHVAYVVSKASSQLGFLFRFAKKFKDIYCLKALYCSIVRPILEYSSAVWSPYYQNEIQRIEAIQRKFIRFALRHLRWNNPLNLPSYRSRCKLINLDLLEDRRNVAKCCFIGDLLQGNIDCPTLLSLVNINIPSRNLRSHSFLTISPARTNYGLHEPMRSMCRVFNQCYRVFDFNMSRVANKCNFRRILC
>CR1_Ele8_gag#LINE/CR1 2-856  [Aedes aegypti]
MSVVCAACIGDATESHVRCRGFCTETFHPRCTGISADTFEEVMKNQQLFWLCPSCTSLMKDIRFRNTARAAHDFGHDQAIHSQSDTLQHLKSEILMELKNEIRTNFATLINSNSFTPKTTQRVKMDALPTTRGRRLFSTANLSAPKSKPVLLQGTGSTLSPSTEIQTVPAPQPKFWLYLSRVARDVSVEQITALACQRLNTADIQVIRLVAKGKDISTLSFVSFKIGMNAELKPKALSTSTWPKGLVFREFSNDNATGNFWRPRPPFAHNDPLSIPMEADNMRME
>CR1_Ele8_pol#LINE/CR1 856-4596  [Aedes aegypti]
IEDIQPATVFDIYDATLLPTHHHQPPGRTLTASLMEAPDLLNTVEPLLPAINSRPGPVFETVEGVFQNRNSGKYVFDTNCSPPEKHLNSSHYATCTTLSSTLFHQPPGRKLASSLMGAPILLNTVEPLQPAFNSRPGPVFETEEGVFQNRNSGKYDFDTNCSLPETPLDSSHNASNLTRSSTLQYHPPGRTLASSLMEASNPLNTVEPLQPAFNSRPGPVFETGEGVFQNHHKCKYDIHTNSALPVILPASSLSSDGGQDCLFQDVARVPTSATTVPFAQHISAGSNRSDVHHSIRGYSSSESHSELRVYYQNVRGLRTKIDQFFVAVADAEYDIIVLTETWLDDCIFSPQLFGNAYSVYRTDRSPLNSRKTRGGGVLIAVSSCLQSCIDPSSVSSSLEQVWVKVRLRGFAVSIGVLYLPPDRKNDLLDIQQHLESVESVMSGLEQHDFAILFGDYNHPEMLWSPSEDGGFKIDSGRTSLSASSSALYDGFCFHGLTQVNSIKNAYDRILDLVLVNERTLPVCRLSQAVESLVVPDTAHPALEIGIRITTPVKFEHVLECRRFDFHRADYDVLSNELASIDWQFLDSVRSLNDMVDTFSNEVLRIIERHVPVQRPPLKPPWTNPYLRKLKKRRGSALRKYRRSRVPLLKRRFVLASNKYVSYNRLSYVRYVDRTQRNLRLYPKRFWSFVKSKRKEDGLPSVMHYEESTVETAAEKCNLFAQHFKAAFSDVDVSSSQVAEALRNTPSESIDFGIFEITEDHVLEALRKLKYSASPGPDGIPSCLLKRCSAALLVPLMKLFNCSLQRGTFPAAWKTSLLSPIFKKGDKCDIANYRGITSLTACSKVFEIIVNNALFESCKNYISTAQHGFFPKRSVNTNLVEFTSLCIRSMDAGKQVDVIYTDFKSAFDRVNHAILLRKLEKLGMSPGLVRWFESYLSGRSMKVRIGAAHSDSFAIPSGVPQGSNLGPLLFSLFINDVAFIVPRGERVLYADDVKIFMVVNSVEDCLALQATLNSFECWSRRNKLELCVRKCYSITFSRKHNPIHFDYSLSGQTLERKNEVKDLGVTLDNELTFRPHYEDVLSRANKQLGFIFKIAEGFSDPLCFKSLYCALVRSILEAAVVVWCPYNRVWIDRFEAVQRKFVRLALRNLPWRDRIHLPPYEHRCMLLGLDTLESRRVSMQSSFIGKIFKGEIDAPAILHELRIYVPERPLRRRNFLNMDARNSRYGQHDPIRYMVARFNEVFEQFDFI
>CR1_Ele9_gag#LINE/CR1 160-1824  [Aedes aegypti]
MKCGVVNCTQNDNRFLWRCQGNCKRTYHAACIGVQRHHEEILRTFMLPLCQDCQDKFIPEFNLNELSTSFKHISESIGHSLTANHKLATNFNSLSAMHDETLAHFEQMLSEIKRSISIVNSSSKTSAAEIKHQLSALLDTPPTDPCAAVEKAVKSAATAAVEEIIISTSAAAHSIDQLPQLINDLVDKNAILASDVKSHIEEMAKTFSATHTHTCEPIMANNLANELGDIIKPSPSWRMLGNKKVWKHDWTEYDAKQRSRRTQEKKEKKARRRRKQRQEIYARNQNHRNINNNNNNNNSNNYNYNYNNNNNGNNKNNNNRSISNINNNSNSRNNSTISNINDNNHNIDKSTTNNTEITSTHMNSVRGNSSLPLDKELLAAARVQFSQPPKKDNGPKFINFQKGETINPYRPEKPARLENPPLFDPMRPPIVRLTEESAAGDQRFLKARLRDPKIMDIVRTYLSFLHDQTPSTCIRGLTKTSASLTLAAEGLPADTNLLREIFLDVHEELGISRSDALEDLKSYRAFLSSERIQRLQLTRESANKFYSAGLQNFRK
>CR1_Ele9_pol#LINE/CR1 1791-4844  [Aedes aegypti]
ILLSRLTKFSKIKTHSLEADITDVSTTSTLHTLPDAHSNVSITNNPKISLSSQQNATEILVYCQNFNRMKSSAKMKEIHQKLLSSSFNIILGTETSWDESVRSEEIFGNNFNVFRHDRNLQHCNKKSGGGVLIAINADFTSEEIETFKHKEFENVWAKALINGETHIFSSVYFPPEHANKHSFELFFKIVETIISNMEPEVKLHIYGDFNQRNADFITDNENESLLLPVVGEDSTLQFLFDKTSYFGLNQINHVKNQQNSYLDLLFTNCTEDFCVYTSLSPLWKNEVFHTAIEYSIFIHKTSLPSDWEYEEVPEYNKANYXEAKRRLCTINWQHIISIDGNVDTEVDKFHSIIQQIINETVPTRRKRRIQNNKLPVWFSPHLKNLKNKKQKAHKLYKKENTATNLQNYHDTCNQLNSAINSAHEEYNRKVESEVKSCPKNFFNYVNTQLKSSNFPSRMHFDGNVGENSSDICNLFADFFQEVYTTYSEEDRDRNFFSFFPEISNSISIEKLSQQEILSALKNLDATKGAGPDGIAPVFFKNLSEELTLPLERLFNMSLNNGKFPVAWKSSYLVPVFKSGTKSDIRNYRGIAIISCIPKLFESLVNDKIFQQVKNQITCRQHGFFKGRSTSSNLLEFVSFILNAMDNGKHVEALYTDFSKAFDRIDIPLLIFKLQKIGMEPGLLSWIQSYLSHRKQIVRFQNKLSAPISVTSGVPQGSHLGPLLFILYVNDISFLLRKIKFLIYADDMKLFMEVSNSSEAEEFQNDINLFFTWCQKSLLQLNIKKCNSIAFSRKYVTPPIEVFLGNQVVQKCKIVRDLGVILDSKLTFVEHYNSIINKANSMLGFIKRFSNNFQDPYTIKLLYTTYVRPILEYCHLVWNPYHVVHEERIESVQKQFLLYALRKLNWTVLPLPSYEARCMLINLETLKQRREFAMILFINNIISNRVDSAALLSQLNFYTPSRHLRTRKLFSEKSCRTHYAQNGPINRMMRQYNVHCEFIGITMSKEQLKTQLKNNRSNP
>CR1_Ele10_gag#LINE/CR1 107-1513  [Aedes aegypti]
MQCSVESCNISDDRFLWKCEFCFKNYHAACIGVQRHQESFILSFMVPLCGDCQHNLKTGIDTRKVLHQQQQLIDSIRAQTDANLRVAADLKKLSAMGDLFDQIELQLKESVLSINNSTSSIVSNAVSALSRVAEKNSTIKNDTPNSDLLAIKNHLTGLLDISMKSSKQNIEDFVETLTTDLTGELKKICSEVQSLSSLTIEMAAHCNDHNASQPHMTTDAIVEMQSIGNEILSEVKVLIDTVNSPQTNIDAVRFVEVESPPSLLDELADQGIETVNLNPGRNSNGTAGWRLLGTKKVWRSDWTEYDNRQQRRASQQKTKEKAQKRKKANKHRGHNNSTNRKTNSIFSKTPSKHTRSKNERENMKNNTSQKWFNYNDSNMKRRSNGAVSNGLPSDKDLLAAAKLTFSKPPVKQRGIKFQRGEILNPYPVDDAFPSCSTSSSNWLFGPALRNSFSQHCSSCSCEKTCFRST
>CR1_Ele10_pol#LINE/CR1 1492-4566  [Aedes aegypti]
KNVFSINLTQSSDVDPDDPIVADEQLVGNILNNDNVSNDRSELSNNVMQRDVLPSTSSEANATEILVYCQNFNRMKSASKMNEIYKRILTSSFSVVMGTETSWNEKIKSEEVFGNSFNVFRDDRDLVLTQRMSGGGVLIAISTKFNSELIISSKHKEFEHVWVKAHIAGETHIFASVYFPPDQACKSSYEIFFQTAEEIVSQLSPEFKVHIYGDFNQRNADFIRDSENESILLPVVGENESLQFIFEKAAFLGLNQINHVKNRQNCYLDFLFSNIMDDFCVNESVSPLWKNEAFHTAIEYSIFVHNNHNSDNCDFENFFDYKNANYDGIKQKLNRIDWQSVLKNQGDLEIAVTDFYSILSEIIQMEVPLLRRRRRNGSKNPVWINKQITNLKNRKQKAHKIYRQQKSRESLENYLYIVNQLNQAISAALEEYNTKIENDLKSCPRNFFNYAKSKMKSNNFPSKMTLDDRAADNPDGMCNLFATFFQETFTNFSDKDRDFEYFSSFPDFTSDIGVSQILLQDILTGLKNLDSTKGSGPDGIPPILLKNLANEFTAPLFWLFNKSLEMSRFPKEWKRSYLIPIYKSGRKSDVRNYRGIAIISSIPKLFESIINKNVFSQIKHRITNTQHGFYKGRSTTTNLLEFVNYTLNAMDRGNHVEALYTDFSKAFDRLDIPMLIFKLNKMGIAMRLLNWIESYLTDRQQIVRFEGKMSKPVHVTSGVPQGSHLGPLLFILFVNDISYVLKHLKILIYADDMKLYMEINSNKDSDIYLNEISIFDKWCSKSLLQLNVKKCNLITYSRKRNTPQITVSLGNQIVQKCDKIRDLGVILDSKLTFTDHYNTIIHKATNMLSFIKRFSYNFRDPYTIKTLYIAYVRSVLEYCSIVWSPHIKIHGDRIESVQKQFLLYALRKLGWTTFPLPSYEARCMLIDIQTLNERREIAMISFINDIVSQRIDSTNLLSCLNFYTPARQLRNRNLFASNNHRTNYAKFGPMNRMMSLYNQHCTEIDLTMSRTKLRQYFNSLRYNTT
>CR1_Ele11_gag#LINE/CR1 14-811  [Aedes aegypti]
MAFCDRMIHLRCSPTKLNKPFVNIIQSCPNLLWICNECVKLMKCARFKSTVSSFGNALELITEKQEIAHAELKREIAKQGQQIAXLSKGIALSTPTHSKSGLTPRQPPLKRRRDESLLPNKPLVGGTKVATDNNVTTEVLTVPEPAELFWLXLSRIHPSVKPEAIEKLVKDCVQCEDSVKVVPLIKKDTDISRMSFISFKIGMDPKLRETALSAETWPKGILFREFESGNSKNMWFPRLNTPTVTISPAPGPSQYSTPTTGVEPMC
>CR1_Ele12_gag#LINE/CR1 140-1381  [Aedes aegypti]
MNCEICLLDSVTDSIMWSCIGRSRKFHPACVGVNIQRGSLRKKERRMDTSSFVLPCCSSCQTMVTASFEFKSLADQQAQLAEQINKNTEVIHRSIQPNSLGVIDEAIDRLEALVTDVKNQLATAKSSCFAGNVNAVKNHITAMFDVALESSKSSISTAVQSIANNITDEVKGLSKDVRELASLTLDITSLEPMRNNPLLEIDILNELKAISANIMTNSSTEVESLDPTLDSPPSLNAELNAKKEDNSGWRLLGTRKVWKANWEEYDKRQLRRLDQQKQAEKARRRRKRNATRNSTTSRNSRLENNVNNDCNNNYTNAPRRTVFGSRRYDNDNSNKSNMNANYLPPDRELLAAAKNQFSRPPSNYRPTIRFEKRETLNPYQPDGPTNPQHIMTQRSPPSPPCEACACKHSCFRRT
>CR1_Ele12_pol#LINE/CR1 1348-4398  [Aedes aegypti]
MRMQTFVFSSDLTLSSEEVDDNLTRSSEVEYKQTTQIALDSFNEINSSSSSVNSSGTSNEIITYCQNFNRMRSAAKLTEIHRKVSGCAYSVILGTETSWDESIRSEEIFGNNYNVYRADRNYQWSEKKSGGGVLIAVSAKLNSEIIVTTKFKEFEHVWAKVQLSGETHIFVSVYFPPNNACKETYDKFFSVAENVMSSLPPEVKIHIYGDFNQRNIDFIPDMDNDYILLPVIGESELLQFIFDKIANLGLNQINHVKNQQNCYLDLLLTNVSDDFCVNEALTPLWKNEVFHTAIEFSQFISNTDFYIDNEFEEVFDFNSANYDNIRNKLNNINWQSILRSKDDVNNSTEVFYNCLFKIILEEVPIIKRRCNGFSKHPVWFNKEIINLKNRKQKLHKIYKKHKSQENLQVYLNMSVQLNSAMRLAYESYNSKTEQEIKNCPKNFFNYVKSKLKSNNFPSTMYFNEKVGHTSQDICNLFSNFFQEVYTTYSEADRDYEYFDFHPEFPNDVGISHINVHEILNGLKNLDATKGNGPDGVPPIFMKTLAIELTTPLFWLFNMSLESGVFPKMWKSSYLVPIFKSGKKSDIINYRGIALISCIPKLFEAIINEKVFIQIKNRITTAQHGFFKGRSTATNLLEFVNYSLSAMENGNHVEALYTDFSKAFDRVDIPMLIFKLQKIGIEAKLLKWIESYLTTRELIVKFKGKKSTPIHATSGVPQGSHLGPLLFILFVNDLSFILDKIKVLIYADDMKLYLEIKTAQDIHTFKHEVQIFHTWCQKSLLQLNVKKCNLISFNRKRDIPNVTITLGNQNVEKCNRIRDLGIILDSKLTFIDHYNTMINKANNMLGFIKRFAYNFNDPYTIKTLFIAYVRSILEYCSIIWSPFSTVHDERIESVQKQFLLYALRKLGWTEFPLPSYKARCMLINIQTLRERREYAMISFINDIVSHKVDSPELLSKLNFYVPSRRLRHRELFAINYHRTNYAKFGPMNQMMTTYNKHYNSIDLTWSKAKLKQYFRTLS
>CR1_Ele13_gag#LINE/CR1 702-1529  [Aedes aegypti]
MPSVCEKCANDLVGEIIKCGGFCTGQFCLRCSKIPSELYPTIKTHQHLVWMCDACRNLLKNSRFTKAMTSISAANDCIVEALKTDIRDSILTEVRNEIRSSFKKMIDSVPLTPLNPIPLQLPFSSRKKRPRDAENEDENNRRPAKLICGTSSSSNAVVPTVNIAEPRQEQFWLYLSGIHPSVPDENIKQLAQESLGTNELTVAKLVPKDKDIRSLTFISFKIGMPSNLKEKAMSATTWPIGIKFREFESAGTTQPVFWIPPVTQPETNNPTAIQSM
>CR1_Ele13_pol#LINE/CR1 1493-4399  [Aedes aegypti]
AGNEQPDSHSIDVIPVQIPSVHDATIPVTVYYQNVRGLRTKTNALHLSLSSCDYDIIAFTETWLRDDISNAELSSNYSLYRCDRSSSTSNLTRGGGVLIGVRKSLQCSFVDVPNACKLEQVAVKVSLANLSMYICCIYVRPNSDPEIYRQHSRSVRYLLDLANDTDMVVVLGDYNLPNLSWNFDDDLNAYLPANASSEHEITLTQSILDTGLSQVNDITNCNGRLLDLSFVSDTQKIESLEPPNSLLPIDAHHRPFVLKCDISSVTDTQDNIFCYDFKRCDVEVLNDALARVDWSSLLTDCHIDTAVSRFYETINNIIAELVPLKKIWRTHHKCPWWNRELRTMRNRLRKFRKKYFKHRSADNKQSLQRMENLYDELRTTAFRNYIRRLESDFKHDPFSFWSFVKSRKHGQGVPSDMVYRSCKASSFRDTANLFADFFSTVYSNQQFNAVQTASNSSVHLPRLEVSTNDVHTALSDVDPTKGAGPDRLPPVFFKKCASSLSLPVSIIFNKSLLDGIFPEAWKIASITPIHKSGSIHDVENYRPISILNCLGKVLEKMVHEVLYRSVRHVISDSQHGFMKNRSTTTNLMTFANKLTKRIEKRQQVDAVYIDFSKAFDKVPHTLAVEKMRHIGLPDWIINWTSSYLTNRKSYVKISDAFSDTFSVPSGVPQGSHLGPLIFIIFVNDICSLLRCDCLMFADDLKIYRTVLSPLDCCALQEDLNIVLDWCGRNGMQVNISKCKVISYSRQRSPFFFPYRLDSEQLERVDKIRDLGVVIDSKVRFNEHISIVTAKSYALLGFIRRNTAAFDDVYALKTLFCSLVRSTLEYAVQVWAPYHNEQCHRIESVQKSFLRYALRRLPWSNPIELPAYEDRCQLIDIETLANRRKKLRRLFVFDLIMNRIDCNYLLGNICFYAPVRTLRNRSILWIPTRRTQYAFFDPFDDSCRLFNDVSDKFDLNISKNVFASRIRNLD
>CR1_Ele14_gag#LINE/CR1 367-1194  [Aedes aegypti]
MAKQCGKCLEPITGIDVVVCRGYCGAFFHMTSCTNVTRALTSYFTTHKKNLFWMCDRCAELFENSHFRALTNHADERSPLNSLTSAITDLRSEIKQLNSKPSTSISPATNIRWPTIDQQRSAKRRRENDSNVRVTDQCRTGSKKANENVVSVPICQTDVNQKFWLYLSRICPDVSVDSVSAMIKANLELTSDPTVVKLVPKDKDISTLTFVSFKIGLDPSLKSKALDPETWPEGLLFREFEDFGIPKFRKPLPLKLSIPPLQQQPLQSPMTPTMEC
>CR1_Ele14_pol#LINE/CR1 1194-4637  [Aedes aegypti]
LTLVNPGYNRCTSFGETQLFSCSPASSSSPPGCTPASLWEAPDPLGTVEPLLPATCSHPGPVSECGDGVFHHENAGKYNCTKDDSLPLTLIASSNLVETHSRLYNRRFVDVDDFRSSRSISSSSPGCMPASFLGAPYPLGTVEPLLPATRSHPGPVSECGDGVFQHVDAGKYKCIKNNILPSTSIVSSRDDNDDAIWIYYQNVRGLRTKIDDLLLATTDCNFDVIIMTETGLDNCINGQQLFGSGFNVYRCDRSPVNSSKSRFGGVLIAIAQRYVSSVERTVSAQSLEQICVSSTIKGRKVFMCAIYIPPDRSQDVNVINDHLSALNELCEKCSLGDAVLVCGDYNQPRMNWCLVDNTVQCNSRQLPLASSTLLDGMDYLCLAQRNLVRNQLDRTLDLVFCLSECVADVDCSLAPMLPVDSHHPPLEISLPACLVRDERIAQPQENRPLNFRQIDFDALLDYLLIIDWNEIFLSNDIDQVAENFCSILNNWLALNVPRIRPSVSPAWSTPRLRELKRARNACQRKLRRQRTPSNKRKFQRASNAYRFKNASLYKLYILRVQRDLRRNPRGFWRFVNSKRKSSAIPTNVFLNEQCARTAVESSQLFARHFEAIFAANTASIQEVADATRDVPADVVDLSAFTINPDMVLLAAKKLKRSYVPGPDGLPAIIICRCISALVQPLCDIFNQSLQQAKFPRIWKQSFITPVFKRGDRHDVTNYRGITSLSAVSKLFEIIMCGIIFETTKCYISVEQHGFMPSRSVTTNLLTFTSKCMKSMEEKAQVDVIYTDLKAAFDKIDHRILLHKLSRLGVSTHLVSWMESYLTGRELRVKIDGCVSLPFSNKSGVPQGSNLGPLLFIIFFNDAGLVLGEGFKLIYADDLKLYIVVRTENDCMRLQNSLTLFADWCRRNKLIISVEKCQVITFHRKMHPIVFHYEIDGIILNRVDHVTDLGVQLDEKMSFELHRSAIISKATRQLGFISKVAKDFSDPHCWKSLYCSLVRPILENASVVWHPHQLTWSLRIERIQKRFIRLALRNLPWRDPDNLPPYPDRCRLLGLETLDRRRKVQQSLLIAKLLNGEVDAPELLSLLEFRVPNRVLRSTTLLQSSFHRTVFGYNEPISACIRAFSAVEEFFEFDEPTRHFANRIRSVVQ
>CR1_Ele15_gag#LINE/CR1 383-1297  [Aedes aegypti]
MEACHACSTLMESGRVINCNGTCGRLYHFTCVGMSKSQFTAWTAXIGLYXFCESCRLNFEPAVYDRDKTIMKALRELLIRTNSMDTRLANYGENLRKINSTIFGPKQQSKSSTDSLHQSNFLQQIDEMTLDDTTDDPINRSRSCENTSFFEVLDEVNGSIALLPDKFVVGANKRVQIIANPSSGSGSSENSPRITVSTPAATNKQTFAQNDRSSRRHTDRITNPSVLPGDRMSVTNSDRSQNGVSRTRPEAPSLKVANITSDSHELESFYVTPFAPDQNEEEVKRYVREISNVHTSLCERGQTGT
>CR1_Ele15_pol#LINE/CR1 1582-5520  [Aedes aegypti]
MSPEARDDATHILNQVKKFQSNENSTNITNSTDTQRVQPFADFASADLSRAYHSAKLPVSPGELYSGICLAEAGKNAAPNLVRVSNLQPLHVSNYRRIDDQPFIEFSSADNSSACHLAALPVSPGKFDSGICPAEARNDAAPNXSREINLQLIGNLATSINGTEDLYFQPCLQVSEEFTTRFIRSGDHSDQHFGEFSSSDDPGAYHFAALPVSPGKFFSGICPAEAGEDTTQNLNRVLNLQSTEHPIAYINPYGEHHIHPFAKSADVSTAYHFAALPVSSGELYSGICPAEAGKDAAQNMMRYPNFQQHHETATCIDQTDRAVCESSSNDHNIILPTINARNGFNDKKCSLLVYYQNVGGINTRVCDYRLACSDSSYDAYAFTETWLNSDTISSQIFSDTYSVFRLDRNPQNSLKNSGGGVLLAVKASFKPRQLSVPNSEAIEQLWVAISFQTNTLFICVLYIPPDRSHDMNVIDQHVSAFNWITDKMKIKDSLLILGDFNIPGIRWKFSTSNYLYPDVTSSSIRSSDATLIDSLNMARVSQLNYVVNHNNRILDLCFGSIDGDVRFSLIEAPSCLVKPTTHHPSLLIEVIGATPCVFVEPVESLYNDFKHGDYSGMNTFFSNINWLDVINQDLELSVATFSNIVLYAIDQFVPKRIHRPPTNPPWSNYRLKQLKRLKRSTLRKYSKFKTLSCKLEYHAANVRYKRLNEKLYLSHQRKIQQKLRHNPKAFWNHVNEQRKESGLPTAMFKDSVEESSTEGICNLFLSQFSSVFTSEYLDEQQVFLAANNVPVYPPVGDHPFVNSEFVCKNCSALKASTSCGPDGIPAIVLKNCSSILSVPLSQLFNLSLQAGSFPECWKKSFVFPVFKKGNKRDVKNYRGISALCAVSKLFEKVVHNFLLHNCLHFISEHQHGFMPKRSTNTNLVAYTSFIAKELQKGHQVDSIYTDFSAAFDKINHQIIVAKFSRLGFSGSFIDWLKSYLTGRKMAIKIGDCTSPYFLVTSGVPQGSHLGPLIFLVYLNDVHSLLKSFKLSFADDFKLYCIVDDVNNACFLQSQLDAFTVWCKTNRMELNADKCSVISFSRKRSTFNFDYKIGSTVLRRESVVKDLGVLLDSKLSFKEHIAFVASKASKTLGFIFRVAKQFKNIQCLKSLFCSLVRSILEYSSVVWAPYYQNSISRIEAIQRRFVRFALRHLPWNNPTNLPIYEDRCKLIGLELLSVRREISKSLFVSDLLQLKIDCPHLLSLLNFNVPHRPLRSSTFIFLHGARTNYGYNEPFSAMCRSFNRCSHEFDFHIPRTTLRTKFSQIISESHQNSR
>CR1_Ele16_gag#LINE/CR1 784-1620  [Aedes aegypti]
MVDVCESCAHELTDQIVVKCNAFCSSKFCQRCSRMPDEILRAVNSSQNLFWACNACTDLMKKSRFRNAMVSVNDVNHTTIDELKAEIRDYVLGEIKTEIRLNFKNFADNMPVTPIGTLRPLVQVSTRSKRNREDDIDQTRTRPQKLFRGTGVAASSGMTTTDGGPTIHEEDRFWLYLSGISPEVTDDAVSSLVSSALETNDSIVTKLVPRGKDMSTLSFISFKVGLRPSLKEKAMTASSWPRGLVFREFVDDTRDNRRGFWKPSITTADAGPTPATIIQ
>CR1_Ele16_pol#LINE/CR1 1623-4520  [Aedes aegypti]
MFPTSHLSSTPAKSKISVYYQNVGGMRSKIRSFFLTSVSLDYDVIVFTETWLYDGIRNSELTEEYTIYRCDRNSASSNFTRGGGVLIAVRKTLPCSSVHLHDSEHLEQVAVSIELPRQYVYVCAIYIRPNSDPTIYSTHSSSICQILDMANTDDSVVVVGDYNLPRLTWHFDDEVDCYLPINASSEQEITLTENILASGLKQICDVTNENGRLLDLAFVNTVAYVECIEPPSAILRVDRHHTPFVLRIDVQHNDEPEPPPSPSDDIFDFNRCDYDALIDALSQYDWNVMLLGLTTDEAVSRFYDTIHDLLRRFAPLARRHTTRTNRKPWWNSELQHLKNVLRKARKRFFRNKTVQNGLSVRRLEDELKSKMDLQYRMYLGNLQDDLKVNPSNFWRFIKSKRCANTIPSNITYHGQSSHSTVEATELFAEFFKTVYSSPISTISDDYLQSLPSYNIHLPPISVTSNDALASLKRLDPKKGPGPDGLPSVFLTRCAVQLATPVSLIFNKSIAEGTFPRAWKSAAVTPIHKTGSIHSAENYRGISILCHLSKVLESIIYDKLYAAAQPILSEFQHGFVKKRSTVTNLLSYISTLNSSLEKRLQIDSIYIDFSKAFDKVPHELALKKLDRLGFPVWIVQWLRSYLSERTSFVKIGCHKSESFRTTSGVPQGSHLGPLIFIIFVNDLCTYLESCKLMYADDLKLYRIVTSVLDCVALQSDVQRLEEWCSLNGMEVNASKCKIIRFNRTRSDIVFDYKLMDKTLEKVTSIRDLGLIVDNKLRFSEHISATIAKAFVVLGFVRRNAADFEDVYTLKALYCSLVRSILEYAVQVWSPYHAIQANRIERVQKKFLRFALRRLPWNDPLRLPPYEQRCQLISLETLASRRTLSERMFVFDVLSGNLDCPELLQRINFSVPSRSLRRHSALWLPRHRTNFGENNPIDRCCRKFNEIAHLHEFGXSKNVFKCRIRNVL
>CR1_Ele17_gag#LINE/CR1 771-1622  [Aedes aegypti]
MSDICEKCANHITGDSINCGGFCSSMVCMRCSGIADDAYASIKANMHLVWMCTACKNLLSKARFSNSLVSINKANESVIESMKVEIRNSVLAEIKYEIRSNFKTLIDSVPRTPASIYRTPHPPSIRSKRLRDNDCDDDAATHRPAKSMCCVGTSATVADLVVSEAAEENRAKFWLYLSGILPEVPESKVVELAESRLKTTNLQVVKLVPRGKDARTLTFVSYKIGIPLELKTIALAPETWPRGIRFREFESVGNKKQFFWRPEAVTPNPIIQTETPIASSILPR
>CR1_Ele17_pol#LINE/CR1 1615-4588  [Aedes aegypti]
VSEELTTTATSVHHAISHIIPPSFPVPPSPTVTPFPRAPIVPLTIYYQNVGGMRTKTNDFHLLTASCDYDVIVLTETWLRSDVRNTELSSDYNIYRCDRSSMTSRFQRGGGTLIAVKKSVASMAVQLDRSDSLEQVAVKVSSSNKSVYVCGIYLRPNSDPGKYAAHSDCVEQIINKTSFGDSVVIVGDYNLPHLLWSYDDDVNSYIPTNASTEQELSFAENMIATGLQQICNVRNSNGRLLDLAFVNSSEVELLEAPSAILPTDRHHKPFVLRLATRSASENLDVAVGQDFDFRRCNYEAVIDDLHLLNWDEIFNGANINEAVDTFYTLVFGIISRHTPLRRTNPQRSNYQPWWNSDLRHQRNVLRKARRRFLRHRTEXNKSFLRSLESEYNECVSSSFREYIFRIQDEVKADPSSFWRFFKSRKDAQAIPSEMSYGDSLSYDIEGSVELFADYFKSVYNVETPPDPHEMLNSLPSFDIHLPFPTFAVAEVVSALNSVDPSKGPGPDKLPPVFIQRCAEVLGPPVCRLFNLSLSEAVFPDAWKVAAITPIHKAENIHDVKNYRPISILCCLAKTLELLVHSRMYAAAMPVISQYQHGFVKNRSTATNLMVFASAVNSSLEKRCQVDGVYVDFSKAFDKVPHELAMRKLERLGFPDWLVKWLRSYLRDRTAFVNLRSTKSTSFATPSGVPQGSHLGPLIFILFINDLSHRLNSKHLMYADDLKLYRIISSMVDCAALQQDIDAVARWCVMNGMEMNALKCKVISFTKSRSQLSFNYTANGVSFERVTSIKDLGVIMDRKLNFAEHISKTTTKAFAMLGFIRRNASDFQDVYALKTVYCAIVRSLLEYAVQIWAPYQETHITRIEKVQRCFMRFALRRLPWNDPLRLPPYENRCELIKLEPLRTRRVFLQRMFAFDVLTNRIDCPDLLQQANFFVPARRSRPRSLFWTARHRTVFGQNHPMERCFNLLNVDVFDFDVSRNKFKARIRLLH
>CR1_Ele18_gag#LINE/CR1 763-1620  [Aedes aegypti]
MAQICEKCANEISGETVTCGGFCSSIVCLKCSAISDAMYASIKANMHLVWMCTCCRNLLSKARFSNSLVSVNKASESVIESMKAEIRDSILADIKHEIRSNFKTLINSVPRTPASHYRTPLVASSKSKRPRENDDDXDNPASRPAKSMCCIGTNAADTNLVVPEAPTEDSNMFWLYLSGILPEVPDSKVTELAESKLKSTNLRVVKLVAPGRDIKSLTFVSYKIGMPADLKPTALSTETWPRGIRFREFENKGSKKQFFWRPTEPTPNQSDLTETPRASGQSHFQR
>CR1_Ele18_pola#LINE/CR1 1617-4628  [Aedes aegypti]
AINSAVVSRIEGGSPTVDHNVINHSPNATITVSHSTPTTAPSPIADRYTPRSSNTPLTVYYQNVGGMRSKTNDFFLATASCEYDVIVLTETWLRSDVSNSELSSDYNIFRCDRSSASCHFSRGGGVLIAVKKAISSLPVRLERCNSLEQIVVKLRLQSKSVYVCGIYLRPNSDPDKYAAHADSVQQIMQKTSDGDSVLIIGDYNLPHLHWAYDDDLDSHLPTNASSEQELVFTENMIASGLLQICDVRNSNDRLLDLAFVSNSSEVELFEVPFSILPPDRHHKPFVLRLFTSELEASHAVSAQHDFNFNRCNYNAVIEELSLFRWEELFQETDVNAAVANFYNVVFGVIRRHTPLRRSSPRRPNSLPWWNADLRRRRNVLRKVRRRFLQHRSEENRSLLRRLEAEYNECVSSSFREYIFRIEDEVKADPSVFWRFFKERKGAQSLPSEMSFGGITSHSPTESVELFADFFKSVYNPSSPLISADALDLLPSFDIHFPCPTFSIADVTEALNAIDSSKGPGSDKLPPVFIKRCAEVLAIPVCRLFNLSLTEAIFPDAWKLSAITPIHKAGNLHKIENYRPISILCCLAKTFERLIHDRMYSAAKPLISQYQHGFMKNRSTTTNLMAYVSSLNFSMEKRFQVDSIYVDFSKAFDKVPHDLTLRKLDRLGFPDWFINWLRSYLRDRTAYVNLKSVESTRFPTPSGVPQGSHLGPLIFIIFVNDLIDRINSHRLMYADDLKIYRIISSSIDCAALQQDIDTVSSWCVLNGMEMNAIKCKVISFTKSRAQMRFDYSANGTLLDRVKSIKDLGVVMDEKLNFNEHVAATTAKAFAVLGFIRRNASEFRDPYALKSAYCSLVRSILEYAVQVWAPYHETQIARIERVQRCFVRYALRRLPWSNPIVLPAYDSRRQLIGLESLRHRRVYLQRMFAYDVISSRIDCPELLQQANFFVPARLLRQRSLIRISRHRTVFGQNHPLEKCFNLLNDVDIFDFTIDRNRFKNIVRQIY
>CR1_Ele19_gag#LINE/CR1 216-1001  [Aedes aegypti]
MAISVCCSCAGELVKAEEIVCNGFCRSSFHLKCVHQSVATRDAVINCSQLFWMCCACTKMMANANFRHAISSTNNAVEAISAEHSKALIELRQEMEQNTAKINSILSQIPSALQNRTGRRGSTSSNTNRKRPRIDEEDTQPESNVTVGTKEIDPQVTIPLAESKTDDNLFWLYLSGFDPKASEDDIRGLVQQNLNTTDTIDVRKLVPKGKKLEELTFVSFKVGVGVQLKDLALLTSTWQKGITFREFDFHPRPTFQFHRTQQ
>CR1_Ele19_pol#LINE/CR1 1000-4002  [Aedes aegypti]
SNETEIIXPLSSNPARLCYPPVHINAPTVCTSFAPLTTRDNIVKTVDTHNPLKSSMTVYYQNVRGLRTKTNELFAALSCCDYDIVVLTETWLNGNVLNSELTNEYAIYRCDRNPSTSQHLRGGGVLIGVKNTIPSNVLSVSGAERLEQVVVQATVGCVSLVVCAIYLPPNTELDLYEQHAACINELHNRLSDGNRVVVLGDYNLPLLRWCFDDDIGCFIPMNASSEQELSLVENVVASGLQQVNHLINENGRLLDLAFVNSGNTCEIVEPPLPLMNVDRHHQPFVMVIETLLSELDDDCSNLAYDFNQCNYDELNFAISQVNWVEILNLDALDDAVDRFYGELNSIFRRYVPLRRQTQLPRNKQPWWNGELRNLRNRLRKARKRYFRSRSDDLKALVRDLECKFNSLNASRFRSYISRLESKMKDDPKHFWTFLRNRTSNCGAPRIVNYQNETSTTWIESANLFSSFFRSVLSNNSPPLSETYLNSLQTFDFNLPATTLTEQDVYSKLRDVDRSKGPGSDGLPPSFIKACSISLALPASLLFNRSLAESTFPSRWKDALITPIHKAGNLHDVRNYRGISILSCLAKVFESLVLDLVYPAVQNVIMNEQHGFVKKRSTTTNLMNYVSTLIENLEKRQQIDAVYIDFSKAFDQVPHQLAVEKLKRIGFPDWLTKWISSYLSGRFASVKLGAVKSDPFQVTSGVPQGSHLGPLLFVLFVNDLCSELKSSKTMYADDLKIFRVISSLVDCCALQEDIEHVLRWCERNGMEVNVQKCNIITFARIRSPIVFSYAVKDCSLNRVSLVKDLGILLDSKLRFTEHISSVVAKSFAVLGIIKRNAREFKDVYCLKTLYISLVRSILEYGVVVWTPFHAVHIERIERVQKAFIRFALRRLPWRNRPHLPPYEHRCALINLPTLKTRRTYLQRLFIFDLLENNIDCPELLTRLRFNVPARTTRRTEFFRRSTHRTQYGQNSPLYVCCQSFNDVNQYYEFRISKLAFKSRIRF
>CR1_Ele20_gag#LINE/CR1 254-1573  [Aedes aegypti]
MPVEMDGEEGEHGCCNQPCAQCALPIRDGDASVECFGRCKLSIHVHCLPDATNEEIVLLRKIRNAAFVCDACLSLAEFDDRHSEKRLDEIAKKLEDLAGVAEVVKNFDQSVKRIVRDELARANKRDAAALGDKDDVSHRMVTRSSAKRRKIDNLGNRVEEEVTPKSTFAEVLKKRSEKRVIEQPKKILPVQKPNPVVVVKPKSGVQVEDVRAELRKKVDARQLNVQRVTSGKSGEVVIALKDEQSVKLLRENVEKNMGGLYDVHVRESIKPTIKLIGMSEEMNEQELKETLIDQNLAFENLKHFKLCKSYCNEKLRFNNVSAIIELDAETFRKAMLEERLNCGWDRCRVVDGLRVTRCYNCCAFNHKSKDCKATTPKCAVCSGNHLVNECKSNVNECANCKKMNTDRKLRLDTNHAAWSVLCPVYQKQLEQRKSFVDYSV
>CR1_Ele20_pol#LINE/CR1 1583-5752  [Aedes aegypti]
MSLHEDFENGERSCVGNIEVVDTPASSGNLIQSIWSAEARHDTAPCLNLNALQMAGRLHDHDDPLPASEDPFDEACCPAGCSTVVDIRTSLESNGRPKLMGSTSTLSINTSSCSTQTERTSRSMMDAPKPPDTVEIHRSSASSDCSGHPSRSVPVFGVGEGAVHLACLGKYYDVCDLSYPESHSTRSKTTTKRHHSASSSLPDIQFASSSRSSSSCSTATERTSRSMMDAPKPPDTVEIHRSSFSSDCSGHPSRSVPVFGTGEGAVHLACPGKYYDACDPSCPESHSIRSKTTTKRHHSASSSTPDIQLSSQYASSIRGSSSCSTVTERTSRSMMDAPEPPDTVEIRRSSFPSDCSGHPSRSVPVFGTGEGAVHLACLGKYNDVGSSSYSESHPACSDIASNVDQPSLTCHRGRSDSTAASDAIANKLMVYYQNVRGLRTKIDDFFVTVVDCDYDVIVLTETWLDDRIYSAQLFGNRFMVFRNDRNPFNSTKARGGGVLIAVSNRLNCLLDSAHINPSVEQLWVKVTTPNRAISIGAVYVPPDRKTDMLYIENHINSIGAVLSRLDTNDFALVFGDYNQSGLAWNVQSNNIPSIDVNRSVISASCSSLLDGFSLHGLVQLNTIFNRNSRLLDFLLVNEVALPDCTICEAPEPLIGLDADHPALETQINMSLPIQYDNFDDPLAFDFNRADFVSMSQALALIDWQYLETCLCVNEAVDYFTSNLNHIISANVPLRRPSAKPIWGNARLRYLKRLRSKALRKYLENKNPLTKQSFVLASNEYRSYNRFLYNGYTNRMQDKLRRNPKSFWSFVKTKKKEDGLPSEIYFGDKFAASVVDKSNLLAERFKNVFNDSTAAESQIDTALSDTPRDAFNLSMFSVTPDMVESAIRKLKHSNESGPDGIPPSILKKCSTELILPLTKLFNASLLQRLFPERWKYSYMFPVFKKGDKKNAENYRGITSLCACSKVFEIIVNDVLLSCCKNYILPDQHGFYPRRSISTNLAPFVSLCLQNMEAGVQVDVIYTDLKAAFDRVDHSILLAKLGKLGVSSDLVHWFQSYLTHRKLCVKLGSANSGYFTNTSGVPQGSNLGPLLFSIFLNDIGFALPTGCRILFADDIKIVVVVRCENDCLVLQHLINVFCEWCDRNFVTISVQKCNVISFHRKQKPIIFNYTIDDLPLHRVDTIRDLGITLDSALTFKPHYLDTIAKANRQLGFIFKIADEFRDPTCLKALYCSLVRSIIEFGSVIWCPYQRVWIMRLETVQRKFVRYALRHLPWRDPTSLPPYEHRCQLLGIDTLESRRSTAQSVFVAKVLVGEIDSPEILANLLVYAPERPLRTRSFLHLPARTVNYGLHDPIRYMAARFNEHYHLFDFGLATSTFRQRIERVLREEEREDI
>CR1_Ele21_gag#LINE/CR1 362-1219  [Aedes aegypti]
MEICNSCAVIMNTSEVACGGFCKATFHYKCAKISESFYKEICGNSAVFWMCKGCCDMMKNSRFKNAMISTNAATLELKDAYQKVVEDLKTEIKDSLIAELKQEIQGGFNKLSPAVLSPVPRHFQFRGRNTPKRIRDEDASEPTEQPTKIFCGTSQSASNALEARSDENFWVYLTKISPEVSENDVLNLAKERLQTEDVVVRSLVPRGKPLSMLSFVSFKVGVHNDYKSKAMDPATWPKGIQFREFVDNDSNSRHFWKPPQRIDPGATSSIQSQQLSSHPVQEPLPT
>CR1_Ele21_pol#LINE/CR1 1219-4122  [Aedes aegypti]
VDESRSHLKYPSNFSSTFLTVYYQNVRGIRTKTQELLLNLCSCDYDIVVLTETWLRPDISNDEFASSYNVFRCDRSSATSSLQRGGGVLIAVKAELNCRSVELENCESLEQAVVQIKLQKFSVYVCGIYLRPNSQPELYYSHSMAVQQLCERTASADKVIVMGDYNLPQLIWQNDEDIDGLLPCNASSEQEIALVETMVASGLRQINCLRNLNGRLLDLVFVNEARDIEVIEPPSPLLKIDYHHKPLVLRMDLNDARMQFAEDSSQQRDFDFQRCDFAELNDAISAIDWEIAFDGRGTDETVCIFYDILYGILDEHVPRRRRTRCSYKHPWWTSELQHLRNVVRKSRRRYFRARTDENRNNLRLIETSYNECQTAAFRSYVARLETTAKHDPTAFWNFIRNRKHSTRFPAEMTYKKTIASCPEDVANMFADCFKNVYSSNPPTFSSDNLRNCPTYDLNLAPFDISRQDVYSALKNLDVTKGAGTDNLPPLVLKECAESLQMPLEIIYNKSLRNSTFPSIWKKASITPIFKAGSSHAVENYRGVSILCSVAKVFEGLVHNVLYAASTPIISELQHGFVKKRSTTTNLMMFTNFLSTEIEKRSQVDAIYFDFSKAFDKVPHELAIAKLRHLGFPDWITEWLRSYLTQRVAFVNINGTHSSVFSIASGVPQGSVLGPLIFILFINDLCFRLKSGKLFYADDLKIYRTIASHLDCCALQADIKELELWCMENGMELNIKKCKSVVFSRRQSCIEFGYSIGSEPLERVESIRDLGVILDSKLRFNEHVNATTAKAFAALGFVRRNASCFKDIYALKALYCSLVRSILEYAVCVWSPQHTTHIIRIEKVQRSFIRFALRQLPWSDPFNLPDYTSRCRLIALQTLSSRRSNLQRLFMFDLIRGNLDCPSLLQNVSFYAPNRHLRQRDLLLIRRHRTSYGFNNPLCVCSRLFNSVSDLFDFNVSKSVFKSRIRVLE
>CR1_Ele22_gag#LINE/CR1 487-877 (internal deletion)  [Aedes aegypti]
MADHCLTCARASSSEELTYTCDGFCKRWAHRSCLxRDGLSCESAKAIPLIKQGTDVNSLNFISFKVGVDPKYRSAALDPSSWPKGILFREFEDNKAKSFWMPKPSTPSINTTTNFDETPQITAASMETTEC
>CR1_Ele22_pol#LINE/CR1 908-4294  [Aedes aegypti]
MGASGPSNTVESSTRNSNTSIMLSCHRSRPGPVFGNRLEVSQPTNEGKYESLRICSCSDVVSASSSFNCFQIVTSHDERNNAHRNTKLNSSYHRSTGCMQQSFMEAPRPFAAVEPATNLVTDTTSSSLHHSHPVPASESGLGVFQTSLPGEHSSCSASTFPDESLTPSNITTTTSSQPLSIYYQXVRGLRTKTNHLRSQLSSCDYDVLLFTETWLRPDIENAEFASHYNVFRCDRSASTSQFSRGGGVLIAVHNRPQCESVEWTNGENLEQAAVRIKLSDRLLYILAIYLPPNSSIEVYNAHALSIQHIVGLLSDFDIFLALGDYNLPNLRWLFDEDINGYLPSNASTEHELAMVEAMFTSGLQQVNHFVNVNGRLLDLAFANLPEHLDLIEPSVPFLPVDSHHQPFIVLLDACCDILSTCPNIGESLYFDFQKCNFELLDNAFSTIDWELLNGPTVEELLSDFNRRVYEVIQEIVPRKRLPSTSVYSKPWWSPELRNLRNILRKARNRYFKSKSESDKIQLRELENTYKNRLSVTYENYISAVQTNVKQNPSLFWNYVKRQRSSDRIPSNVRYAGSMAATDSETADLFAAFFENVFSRASPVPRADRFEDVPSYNISIPECHFSNEDVLPVLEDLDDKKGPGVDGFAPILFKKCAHVLAKPIAAIFNRSIQERKFPSAWKTAIIVPIHKAGSQHLVENYRGISVLCCLSKVFEKLLHKVLYNAASSIMCEYQHGFVRNRSTTSNLMCYVTAISRAMESKQQVDAIYIDFAKAFDTVPHLVVVEKMEHLGFPRWITSWLFSYLSDRNAFVKVNFARSKLFEISSGVPQGSVLGPLIFIIFVNDLILKLSSYKLSFADDLKIFRIISTAADCLALQNDIDALLVWCDDNGMRVNSGKCKIISFTRNSTLRLHQYTIGTTLLERVQSICDLGVTIDSKLRFNKHISTITAKAWSVLGFIRRHASEFTDIYALKTLFCALVRSILEYAAPVWTPYHLSYSLQLERVQKCFLRFALRGLPWRDPENLPSYPERCQLINLETLSERRAKSQQVFIFDIITGNLDCPMLLSEVPFYVPPRSLRNAPFLANPVHRTSYGQNNPFSAGVRAFNNVSVLFDFDMSKAVFKNRLRNVIS
>CR1_Ele23_gag#LINE/CR1 1354-2152 via tfasty with CR1-5_CQ_gag, 1 frameshift and 1 stopcodon. [Aedes aegypti]
MSCNKRQKVIDDADRVNCRGYCGNSYHMICVMLDYSLRDILKGHEKNLFWMCDGCAEMFSSDHFRNIASRCTNGHVPDESSFKTLKEDIAGLKEIVRNLSSKIDSKPVTPVMTTSWPVPNRMSGLNPVPNTHKKKRENSQLKEKPSNIRGTKAASELVKTISPPEELFWLYFTSSTSDKDIVTFVKNCMDLTDMEPxVVRLVPKDKDPTTLSFVTFKVGVNKALKDLALSSEIWPENVYFREFESHPKNQRRVISVTSGKSPHHVQ
>CR1_Ele23_pol#LINE/CR1 2146-6159  [Aedes aegypti]
CPVIHQPPGRTXASSLLEASDPPITVEFFLPATCSRPGPVYGVFRISNAGKFTVLPNHPCPEVLSASRPYPSNVLLRPSFAWIPGRTPDLSFMEASNPPNTVEPFPPAIHSRPGPVFGIGGEVFQNTSAGKYFTSTHNTCSETFITSRTRGLSVSGLGFTPILGSMEASHPPIKIQSSLPTFNRGPGLVLGSKGSSLASFLVVSDPHQPERTACSIEEVPEPLDPVAPFVSSHHSRSGPVVEYGDGIFRPPIAGKYQTLWNNSLPDMPLRFSVPHGSIDSLNNIRERINCTSHPLLGPMFDASLQPERTACSTKEVPKPLGSVALAGSGHHSRSGPAAECGDGGFRPFTSGKSPSDGNISSTDARSCFSKHXTPNTLRIYYQNVRGLRTKIDDFFLAVSENEYDIIILTETWLNDVIYSAQLFGDHYRVYRNDRSSVNSCKSRGGGVLIAISSNFNSFREPASVHDSIEQLWVRVDMHQVIVSIGVLYLPPDRKNNLNDIRNHVDSIGSVISRLGPNDLALQFGDYNQSTISWTSSETGPPSIDLDRSCLSVASSALFDGFNLHGLTQFNGIKNTRGRVLDFVLLNDAALPTCTVRRALEPLVPIDDSHPPIEVDVCCLAPVSFEPEFDATCLDFRKADYTVLNAALLSVDWSFLNSADNVDDAVEYFTNSVNRIVASHVPVIRPAPKPIWSNNRLRSLKRRRSAALRRYCNHRSAYLKQQFNTISREYREYNKLSYLRYTTRTQQNLRSNPKKFWAFVRSKRKEDGLPTSMFYGSNTASSAAEKCELFAAQFSAAFNDSAATPSQVEDAVHDTPIDVLNFTTFRIDAENVTKAIRKLKSSYSAGPDGIPPALLKRCLPALHEPLAVIYNLSFQREQFPSRWKHSFLFPIYKKGDKRDVSNYRGITSLSACSKVFEIIVNDVLFNCCSHYISIDQHGFFPKRSVTSNLAQFVSTCLQAMDDGKQVDAVYLDLKAAFDRVDHRILLKKLERIGISQDCIEWFRSYLTGRSLCVKIGSCHSTHFRNVSGVPQGSNLGPLLFSIFVNDVSLILPPGVKLFYADDAKLYVVVNCIEDCIQLQTLLCKFERWCVHNCLTLSIEKCQVITFSRKRKPITFQYSLSDKFLERVQRVRDLGVILDEKLTFRFHYDDIISRANRQLGFIMKVTTDFQDPLCLKALYCALVRSILEFADVVWCPFQTTWISRIESVQRKFVRFALRTLPWRNDQHLTSYHDRCQLLGIDTLENRRRIAQAMYVVKLLNGTIDSSALLARINFNAPERSLRRHSFLRLEGRNSRYGQHDPIRFMSNTFNSVAHLFDFNMPVSAVQQRFSSHFRTNQADQ
>CR1_Ele24_gag#LINE/CR1 354-1184  [Aedes aegypti]
MDSKCYHCAKQVKTIEFLQCGLCNQAVHIKCVGLKRQDMEFVNEHKNVIWFCDKCIDQLQHVKDNPIKSTADVVSEISDSIKVSLDELKTELRETKELTKSLAEKKQPVESSGFYRNRPWPSIKRTREAATRDTPKSRPDVKLLSGTKSVEADNIIVETIAKPAEKFWIYLSRIARHVTEADISELVKTCLQIKDEVVVRKLVRKDADLKQFAFISFKVGINKDLRDTALDPSIWPKGILFREFENLQSERDFWGPTKVPRIDDRTPAMETSPNLLQ
>CR1_Ele24_pol#LINE/CR1 1220-5062  [Aedes aegypti]
MSKSTMDAPKPPDTVEPCRCSSIAACSSRQSRSVPVFGTGDGAIHLACPGKYYDISSFSFPKSPPACRNSSRRYRTSPTSPFNSRAACSHPQGTELDRRAEHNPRCSVDGFFETCSSSQTAMSAEHTRLVSVTSNSGLILKQPDDASSTPGRTVAGIMEGLHPPSTVAPQQPPLISRPGPVSGTGGGLFRAVNTGKFDLSVCRSILDPFTSFSMPFAPQRSSSSIGRILGRTTSSNMEAPEPPTAVQLFQPTTDSRPSPVRGCGEGVFQLTVNGKYAPSSNNSLADVVAASSSSSSEQRRPSTSRGRFQAPSRETNASGPVLATNPSPIVKLPTSVYYQNVRGLRTKTAKLRLALSSCDYDILAFTETWLRPDISNAEFSSGYTIFRCDRSALSSNFLRGGGVLIAVKKSFQCELVICTGCEHIEQITVRIKLQGCWLIICTIYLPPNSGPDLYSACSSVIQQITESMSESDIFLLLGDFNLPNLRWQLDEDFNGYLPSNASTEQELALVEATIANGLQQMNNIVNANGNLLDLIFVNLPEHLDLVEPPLPLLAVDTHHMPFVVLLSTNFPDVSDDQSEDIGFNFLRCNFDVLNAALSSISWEIHPDSSVDYALTTFYNKLKQVILEYVPRKHRATNSVYNKPWWTTELRNLRNVLRKSRTRYFSSRSAANKSHLRDVEIRYNTLLLATHNDYIARIQSYAKHNPSSFWNFIKRQRSNNCIPANVEYSGHSASTNSEAADLFAAFFESVFTRVSPVPRHDRFQNIPSFDISIPLPQFSIEEVSQALNDLDVKKGSGDDNLPPLLFKRCASTLAGPITDVFNRSLAERKFPCAWKNAIIVPIHKSGSRNRVENYRGITLLCCLSKVLEKLMYNILYNAALPIISNSQHGFMRNRSTTTNLMCYVTALSREVEAKQQVDSIYIDFAKAFDTVPHLLTVEKMSHLGFPGWTTQWLFSYLSNRTAYVTVNSASSSAFEITSGVPQGSVLGPLIFIIFVNDLYQLLSSCNLSFADDLKLYRVIRSALDCIAMQADVDAIIVWCSDNGMRINSNKCKVISFTRRNHQYRHEYTAGSAVIERVQSICDLGVTIDSKIRFNEHVAIITAKAWSALGFVRRHASDFTDIYALKSLFCALVRSILEYAAPVWSPYHVTQTLRIERVQKKFVHFALRHLPWIDPTNLPHYPDRCRLINLETLSARRTQLQQLFIFDTICGNLDCPTLLGEVSFNVPPRRFRSSSFLTIPYHRTAYGQNNSFSLCVKAFNDVSDRFDFNLSKVMFKTRIKNLG
>CR1_Ele25_gag#LINE/CR1 320-1234  [Aedes aegypti]
MRGGLDQTISSVTVEKCFASNMSLVCCSCAGDIGEIQVECQGFCKAIFHPRCCGVAAEVFEQVMRNNQLFWFCPSCTALMKDMRLRNTARAAYEVGQGHALNSHSDIMANLKTEIMDELKAEIRNNFAKLVNSNSFTPKSSRRVGIDPRFTRSRRLFSTAANPIPNNQPPLLLGTGSTPSPSIEIATVPPPQPKFWLYLSRIAKDVSVDQIRALAKKRLGSDDVQVVRLVARGRNIDTMSFISFKIGVNLDLKPKALSTSTWPKGIVYREFTDNNKNENFWRPEPVAATDDPLSFASEEEVVLME
>CR1_Ele25_pol#LINE/CR1 1480-5382  [Aedes aegypti]
MSSFHQPTSHNRTPGRRFAASLKEASIPLTAVEPLPPATSSRPGPACELEDEVFRNPISGKYADILSTSPAVPYVASSTTSPIRVYSTSSFWNPGRILAASLKEASNPLTAVEPLPPATSSRPGPACEQGNEVFRNPAAGKYIDILRTSSAVPYVDSSLPSNIQASSTSSNRTPGRNLAASRKEASIPLTAVEPLPPATSSRPGPACEQGNEVFRNLSTGKYDLIPRTSPAVSLVVSRSRIPKDALTNSRLYDQWRISEGDSQLAQAGPSRNATWLSIPMPIPERTDTSSMEASYPTTVEKTGSSICRRPSLGCGVEDGVFQAATIGNASSDARDRIAYFNTSSLPDSRSLCVYYQNVRGLRTKTHDLKLRLSSCDYDIVVLTETWLRPDISNSELSSDYTIFRCDRNKTTSNLSRGGGVLVAVKGDLQCTEVSLSDCADLEQVAVCVKLPNQTLNIFGIYLRPNSEPSLYSTHSAAVQRVSDSTSNNDVILVFGDYNLPHLQWSFDEDVNGYLPTNASSEQEVSLTESIMACGLVQINSFTNRSHRILDLVFTNFSDISELSQPVLPLLPIDDHHPPLVLQIDVCFSAPSQLDPDPNILGLDFRRCNFSSLNNLLDSVDWDNQLLGHSVDESVGLFYDKMYEILRSVIPRRRCVNLGVDRKPWWNPELRNMRNRLRKVRKRYFASKTVENRNLLCLVESSYNELIDMSYRRYLENLQLTAKNNPSKFWKHMKAQKASHGIPNNVTYGDINATTHVEAAELFAKFFQSVYSATSPRVYPGCFQNVRTHNIHIPPFQFSHQEVLNALLSLDTTKGAGVDGLTPHLLKSCASSLVAPLTLLFNRSLNENTFPQLWKIATMVPVYKSGSIRLVENYRGISILCCLGKMLESMVHKVVMSASISIISQYQHGFIPHRSTTSNLLCYTNVLFREIERRKQVDSIYVDFSKAFDTVPHLYAVEKLRHMGFPDWISDWILSYLTDRKAFVKVNSSRSSTFSIPSGVPQGSVLGPLIFVLYINDLCHRFSSGRLCFADDLKIFRVINSTLDCVALQDDIDSLLQWCIENGMTLNIGKCKVITFCRSLSSINYTYAINGTTLERVGSIRDLGVVIDSKLRFNEHITVITAKAFSVLGFIRRNASQFTDVYALKALFCALVRSVLEYAAPVWAPYHTSLMIRIERVQKSFIRFALRRLPWNDPINLPDYPARCQLVDLELLSNRRLKLQRLLVHDILTNNIDCPDLLSEVQLSVPNRRLRHTTLIAIPLHRTSYGYHDPFTTCLRNFNSVCEMFDFNVSKDCFRARIKNIV
>CR1_Ele26_pol#LINE/CR1 3-3278  [Aedes aegypti]
SGEGVFHRLHSGKYLQVDCDSCTEVVSFDSAYDVDLSASNELRTCNRPPQTTPSVLXDHPSNMRPTFSPHSGRTASSTMEAPTPPSTVEFLQPAFFSRPDPVVGCGEGVFQPVQSGKYVENADCLLPDISTPSSLRIYYQNVRGLRTKIDSLFLAVSDLDYDVIVLCETWLDDRILSSQLFGNLYSVFRTDRSALNSDKRSGGGVLIAVSSRLSCSLDSAVISNELEQLWVKIVLPRNNVSIGVMYLPPDKKNDIGVIHRHIDSIGAVQSLLQENDMALQFGDYNLSNVFWSSNXDDNVSIDLTRSRLNPASSTLLDGFCFHGLSQVNTLVNGGDRTLDLVLVNDVVMQNFSLFEAIEALTVIDIHHPPIELVVSCPLPVTYEALFDHTGFDYKKANFESLNSALYLIDWSHLDCIDDVNESVAFFTNSVMQVVAEHVPLRRPPSKPPWSNNRLRFLKRRRSAALRLYRSHRSQESKLHFNRSSSEYRSYNAYLYARYKRRTEQNLRTNPKQFWSFVNAKRNEDGLPTSMYLGDLSADSASDKCELFAMQFRRAFNDSISQQNQADHALQDTPHDVFSYEMFYVTEQEVTRAISKLKLSYNPGPDGIPPALLKRCSATLLRPLTKLLNQSLRLQQFPACWKKSFLFPVHKKGDKRCVSNYRGITSLCACSKVFEIIINDSLFDCCKNYISTDQHGFFPRRSVESNLVEFTTLCIKAIDAGKQVDAVYLDLKAAFDRVDHRILXQKLRKCGVSTGFSNWFDSYLTDRSLCVKIGSCESASFTNISGVPQGSNLGPLLFSLFINDASLILPPGTRLFYADDAKVYMIVNGLNDCIRLQSLLDSFEAWCVRNFLTLSIEKCQVISYGRKRNPIRFPYKLSGTTLERVQRVRDLGVVLDEELTFNYHYDDAISRANRQLGFVLKVXDGFRDPLCLKSLYCALVRPILEFAAVVWCPFHASWITRIESVQRKFVRRALRNLPWRDPRNLPPYHDRCRLIGIZTLENRRHVAQTAFVSKLLKGEIDSPSLLADVNVYAPERTLRRRHFISLGSRSTLYGQHDPVRFMTAKFNEVFHLFDFNVSITTLRNRFVQYFGRN
>CR1_Ele27_gag#LINE/CR1 399-1298 via tfasty with CR1-3_AG_gag, 1 stopcodon. [Aedes aegypti]
MDCAKCTMKIAGIESPVVCRGYCGSVFHMTCAGVSRALTDYFAKHRKNLFWMCDKCAELFENSHLRAITKQADEKSPLMSLTNAITNLQTEIQKISSKPASTMSSPNRWPMISEMTRAKKRPRGFDSSECQSGSKQLDQNVVSVPVSEKPAAKFWLYLSRIRLDVTNEAIAAMVKANLELDSDPVVVKLVAKGADTSNMSFVSFKVGLDPSLKDNALDPSTWPEGIMFREFEDYSSQKFRRAPTVSPGLSPLATTATITVNxMLIYLRRDAPAKAVRKALSHPKQSHHSPFTINDYIRTT
>CR1_Ele27_pol#LINE/CR1 1210-4804  [Aedes aegypti]
LVSSCHQSHPGPVFAEKGEAFRTPLAGKYLNYASPIVPEVFSDFSNADCERAYFGGQPVLGNLMVDSPVLIWAPRRALHHDPPFFNQHSPGCTCESFMEDSNPPETVEPINEYSPYLHHPISSCQHRHPGPVFVERGGVFQTPTAGKYSNCSSLHLPEVLLDTHRTHFDAADANDGTPEGTQHSVEIHHSDVQCATQQHSGHQRGLATTPVNRQSTPVDRFLSVYYQNVRGIRTKTNTLRLMLSSCDYDVIVFTETWLRQDIADSEISSEYNIFRCDRSAATSEFSRGGGVLIAVKTALQCSALELSDCGQLEQMVVRIKLANRSLIIVAIYLRPNSIPASYTAHTNAIQALCDMVSDTDIILALGDYNLPNLQWQFDEDINGYLPTNASTEQDVILTESFSTSGLIQLNSISNSNGRILDLAYANTPDYIELIDPPLPLIKMDEHHKPFILRLDTRYTSPCFDNVPMDATAFDFKRCDTDALRYKLSSIDWIHQLSCSSVDETVCAFYNILHGIFDQCVPHRRLAPAIVNRKPWWTAELRQMRNRLRKTRNRYFGDRTDANRIALHQLETDYNDLLSSTYAVYVNNIQSNLKQNPSSFWSFVRAQKSSKRTPCNVEYNGQTASSAKEAANLFANFFQSVFRDSSPAARFHHLPSYDVNLPDFRFSAGEVLELLHCLDASKGPGVDGLPPSFIKSCAHELVTPVALIFNRSLTEGTFPAMWKTARMIAIHKGGSINHVENYRGISILCCLGKVFETGVRRYLYNAAKPFISEFQHGFVENRSTTTNLMEYVNTLFPAVESRCQVDSVYVDFSKAFDLVPHNLLIEKLRHLGFPNWITNWLNSYLTDRKAFVQVNQQVSTHFPIPSGVPQGSVLGPLIFVLFINDLADRVSSGKLFFADDLKMFRIIASALDCTALQNDIDQLTDWCQENGMFVNIKKCKVITFTRCHTPICFSYKIGSASLERVESIRDLGVIMDSRLNFNEQVSLAVSKAFSVLGLVRRHSTFITDIYALKALYCSLVRSILEYAAPVWAPHQVTQILKIERVQKYFIRFALRQLPWENPSELPPYNSRCLLIDLETLSARRTKLQRVFIFDLLSNRIDCSALLNSXNINVPSRTLRSHNALVLPVSRTXYGFNNPFYVCIRAFNTVFHLFDFDISKNVFVSRIKNIA
>CR1_Ele28_gag#LINE/CR1 352-1176  [Aedes aegypti]
MAKSCGKCAEAITGLDLVICRGYCRSAFHMNCTTVTRALQSYFTSHKKNLFWMCDKCAELFENSHFRAISVPQNDDWPLSSLTTAITELRTEIQQMAAKTTSSLTPVARSRWPVVGQRMQFKRKREEQNESRVTEACKTGAKQSVGNVVAVPTCVEQQDTKFWLYISRIRPDVSSDAVMAMVKANLEIEADPTVVKLVPKGKDISSLTFVSFKIGIDADLKSKALDPATWPEGIMFREFEDFGAQRSQLPSKVPRFLTPSNRDVLTPDTPVMNLT
>CR1_Ele28_pol#LINE/CR1 1239-4867 via tfasty with CR1_Ele24_pol, 1 frameshift. [Aedes aegypti]
MEAPNPPATVAPLLSTFISRPGPVCGIGGGVFQHPTNGKYNNRIYRTVTDSFHGSSDSFDLCTSFELPSFIAIPGCTPASNKEASEPPLTVEPIPPATRSHPGPVFEIGKEVFQINIAGKYTQASNNFLPFTSSLASSEVCQRSPLDVNSPDMHQLNSLPAQMWSPGCTSPASPKEASNPLITVEPLLPAFSSHPGPVFEHGEEVFRILNAGKYSPMLSNFSAVTSAASSVSSTPQLDHNAQPPTTCDGTSSAPPGKHLFSLYYQNVRGLRTKISKLRLLLSSCDYDVLVFTETWLRPDIVSAEISPDYVFYRCDRSSSTSHYSRGGGVLIAVKCRFKCELVPLSSCEHLEQVTIRVKMSHRSLYVVAVYLPPNSPTDVYSAHASAVEHIANISSKKDIILSLGDFNLPNLRWQLDDAMNGYIPSNISSEPEQSLVEAMFAIGLQQVNNLVNINDRLLDLAFVSLPEYLDLIPPPIPLLTIDNHHMPFVLIFDECEELISEPDDFIENSNFNFNACDYDQLNEALAAIDWNAVLQCGSVDEMLISFYDKLYGIFNEHVPRKRRKFTSTFSKPWWSAELRNLRNILRKARKRFFLTKSEGERENLHDVEIAYKELLLSSHENYVSTIQTNVKQNPSLFWDFVKKQKGTTRITSNVHLNGSHASTNKEAADLFASFFESVFSRAAPVPRRDCFAHIPTIDISLPVIQFSCNEVLEAINELDVSKGQGTDAVPPLLLRNCSTTLADPITKIFNRSLSEKTFPALWKQACIVPIHKSGNCSSVSNYRGVSILCCMSKIFEKMVHSILYNVAVPIISNTQHGFMRRRSTTSNLMSYVATLSRELEHRRQVDSVYIDFAKAFDTVPHVTIVNKMKHIGFPDWIIDWLRSYLSDRSAYVVINSARSRSFAITSGVPQGSVLGPLLFNIFVNDLSLLLSSFVLSFADDMKMYRTIFSQLDCVALQEDVNTLLIWCGDNGMRVNGTKCKVISFSRCSDKTVFEYSIDSVLLQRVTSICDLGVIIDEKLKFNEHIGVTAAKAFSALGFIRRHAADFTDIYALKILYCSLVRSILEYAAPVWCPYYSTLVLKIERVQRRFIRFALRNLPWNDPVHLPPYPDRCRLIGLETLSQRRVSMQCVFIFDIIQGNIDSPVLLEQIPLYVPPRQLRYSSMLAIPHHRTNYGHFNALDFCLREFNRFSDSFDFNVSKNVFVNRIRDRI
>CR1_Ele29_gag#LINE/CR1 591-1469  [Aedes aegypti]
MEICNSCAVNMTAPEVVCGGFCKATFHFKCAKISDTLYSQIVTNSATFWMCQGCREIMGNARFKNTLNSMNAATKEVNDMYQKLVDDLKTEIKDSLIAELKQEIQGGFNKLSPAILSPAPXRFQFNNRSASKRLRDRDEVTFQLPDQPSKVFRGTNQAINASEDSADRSXNRFWIYLTKISPEVTEDDVVNLAKNCLQTENVVAKVLVPKGRPLSSFSFISFKVGVSNDLKSRALDPSNWPREIQFREFVETSSSVRHFWKPGQAADPGVSNNPELRPAPASTSYQPHQQLTE
>CR1_Ele29_pol#LINE/CR1 1493-4417  [Aedes aegypti]
MLSTPYLIPHNTSPTCSTSGSQSFPTSLTVYYQNVRGLRTKTNNLLLSLLTCDFDIVVLTETWLHSEIASSELTCNYVIYRCDRNSSTSNLRRGGGVLIAVKSELNCKAANLTSPVDLEQTIVQIVLPHLSVYICCVYIRPNSHPDIYTKHVESVDQVLKEVNAHDIILCLGDYNLPNLTWRFDEDLSGFLPTNVSTEQEIALVEPMLSTGLYQINDVLNVNDRLLDLVFVSDPCIIDLFESPSSLLKIDAHHKPIILSLDARSRHARLQSSPELSADYDFSRCDYHAINNLIASQDWNQLLDQDSVDNSVATFYHVINRIISETVPVKAKRSTKSFRQPWWTPQLRNLRNRLRKARKRFYRNRNPTTISNLKTAEDDYLRLQHNRFREYVNSLQSNFKQDPSSFWTYINKRKSSATIPADVSYRTRSAGSPEENANLFAEFFRSVYVENPPPISQDYVNSLPSYNIQLHRVTFDGDSIRAALSKVDASKGPGPDLIPPSFIKQCAQSLAAPIASIFNRSLIEGVFPEAWKLASITPIHKSGSVHDVENYRPISILCCLAKVFETLLHDALYPVVQPAISESQHGFVKKRSTTSNLMTFTHAVFDKLEKRSQVDAIYVDFSKAFDKVPHNLAIAKLNRLGLPCWTIQWLKSYLSSRKAFVKVQGARSDIFGISSGVPQGSHLGPLIFVLFINDLCDQLDCGKLLYADDLKLFRTIKTLLDCCALQADVDRVSNWCDLNGMQMNANKCKVISFSRRQSTTVFDYSLNSSSLERVSSIKDLGVILDSKLRFHEHIATMTAKANAMLGFLRRNTQLFDDAYALKSLYCALVRSVLEYGVQIWAPYHAVHVESIERVQKRFIRYALRGLPWNDPAHLPPYEHRCALIGVQSLANRRTLLQRLFVFDVITGNIDCSSLLANVQFHAPARQLRNRQLLWIPSHRSLYGYNNPLDSCCRLFNDVCDVFDFNISKLVFKNRIK
>CR1_Ele30_gag#LINE/CR1 333-1187  [Aedes aegypti]
MEKKHCGECHLEINDLEPVRCGLCESPFHISQNCCGFNLRSCKDVFAQGKAVFVCTKCRDELNGRSIRAYIADQAHRNVSPTASADNINTQIQQLSGIVAELSRKVDNIANISTPKLPVVREMRTPVWPGLGMKRRRGENGQSLAPAADRGTGAMDFSDLSIPFITPAASPPKFWLYLSGFQPKISDDDVQKIVARCLDLRDPFEVIRLVPKGADTKNMSFISFKIGLELALKQQALDAARWPTGLMFREFVDFSKNRRPLSFAREPPAVTPTQEQPTGNPETIV
>CR1_Ele30_pol#LINE/CR1 1325-4189  [Aedes aegypti]
MVYYQNVRGLRTKIDDVFLAAHDCEFDAVIFTETGLDDCITSLQLFGTTYNVFRCDRCPRNSNKSRFGGVLIAVAEQYTSCKIDTTSARNLEQISVSTNIKGKKLSLCAVYIPPDRSQDLSVINEHIASVQELCNNCSANETVLICGDFNRPRMRWVRNDTGIICGGSLLPPTSHTLLDGMEFLGLGQRNLETNLLGRTLDLVFCPLECEATVGGCSMPMLPVDSHHPPLAISLHTDVDEALSSTVGDRIAVRPLNYRLIDFPGLSDRLNNIDWTSLFASKEVDDMAECFCGEINRWLETNVPRVRPSFTPAWSSSRLRQLKRERNACQRKLQRRRTNANARIFHRAVNAYRHLNASLYKSYVLRMQSSLRSNPRGFWNFVNSKRKTSSIPSNVYFGNATASSSLESCELFARHFASVFSSHVTSQQEAENVASNVPCDLVDFGIFVITPEMVVKAAKKLKSTFSPGPDGLPAVVIRRCITVLARPLSDIFNRSFEQAKFPDIWKQSFMCPIFKNGDRRNVVNYRGITSLSASSKVFEIIVSGAMLERTKNYISFDQHGFMPGRSVTTNLLSFTSKCIASMEARAQMDVIYTDLKAAFDKIDHTILLCKLSRLGFSSQLVCWLNSYLFGRVLRVKLDNAVSTPFSNKSGVPQGSNLGPLLFALFFNDVALFFEDGSKLVYADDFKLFLEVRSIDDCLQLQSQLQVFVAWCTKNKLVISVAKCYVITFHRTQRPIVFDYNIGGTILTRVSEVHDLGVQLDAKLMFDCQRSMVISKATQRLGFIFKIAKDFNDPHCLKALYCSLVRPILENASVVWCPHQVSWCLRIERVQKRFVRMALRNLPWRDPVNLPPYPERCQLLGLDTLQRRRKIQQALIIAKLINGEIDSPELRGMLNFRVPSRSLRNTTLLEQRFHRTLFGYNEPMAACIRTFSMVEDLFDFDENIDKFAGKINRSRLF
>CR1_Ele31_gag#LINE/CR1 379-1191  [Aedes aegypti]
MAKNCSKCSEAINGIDYVVCRGYCGAFFHMNACSGVTRALLNYFTTNKKNLFWMCDKCAELFENSHFRTISTNADQTSPLNLLTTAITELRTEIKQINAKPKAQFSPAVGWPSLTERRTTKRPFEQVVARASENCRVGSKQPQANVVTVPVCQKEDNQFWLYISRIRPDVTTEAVQAMVKANLNVDDDPTVVKLIPKEKDISTLTFVSFKIGLDPSMKPKALDPETWPEGLLFREFEDYGAQKFRVPLKHRKPMTPSLSVSSPITPVMDLS
>CR1_Ele31_pol#LINE/CR1 1191-4868  [Aedes aegypti]
LSTINPGRTTLSTLEAPEPPSTVVSFLPALSSRPGPVFWSGEGVFQSVAIGKYSFNIDNIVPDALVDSSQLLQFRHSSSGSIVAEEGCMPVSLMEASYPLISVESVPPSFISHPCPEFECGEEVFQTTTTGKYAYSLNNYVPDYSGASSRSLYSCLSGSARIVPAPGCTPASLMEAPNSLNTVEPFPPALRSHPGPVFENEEGVFQPVNAGKFANVRNTALPVISIASSYQTPDDFRSIDDVIEINDRPCTGSTAPSSSNLTPNVGTRLAGISSRTLSVYYQNVRGLRTKISRLRLLLSSCDYDVLVFTETWLRGDIESNEISPDYAFFRCDRSESSSQHLRGGGVLIAVKNYLKCEYFPLDNCETLEQVAVRINLHHRTLYVIAVYLPPNSSQDLYTAHSCAVQLIADRLMESDILLSAGDFNFPHLRWHLDEDINGYVPVNTSTDTELNFTEAMFASGLRQINSFINTNGRLLDLMFTNLPEYLDVIAPCSPLLPVDSHHMPVIILLDESDTQTFPDNLETCFRFDYSACDFELLNSVFENTDWGRSSNYATVDQMLSSFYESLAGVISRYVPRKRQAFISIYNKPWWNPELRHLRNILRKMRNRYFNTKNDHDKTRLRDFEQQYKESLYASHESYLASIQRNVKQDPSRFWDFVKQRKAGIAIPSSVSFDGVTAHSNTEVADLFATFFESVFSRASPVQRRDSFEQIPVHNITLPFVQFSVEEVQNALEDLDSTKGPGTDNLPPLFWKNCAATLAMPITAVFNRSLRDRRFPSAWKTASITPIHKSGSYNCVANYRGVSILCSLSKVFEKLIHAVLYRAAAPIISNNQHGFMKHRSTTSNLMCYVSAVSRELESRRQIDAVYVDFAKAFDSVPHDIICRKLSHLGFPAWLTDWLCSYLTDREAFVKVKSTRSRTFNIPSGVPQGSVLGPLIFIIYVNDLYELLSSFNLSYADDLKIFRVIASSADCVELQEDINRLLIWCDDNGMRVNSKKCKVISFSRSNSISLHQYNMGLDFLERVDSICDLGVTIDSKLRFNEHISIITAKAFTVLGFIRRHASGFTDIYCLKTLFCSLVRSILEYASPVWSPFYVKHNLAIERIQKSFLRFALRHLPWNDPINLPSYPERLKLINLESLSARRIRSQRLFIFDLITNNIDCPDLLELIPWNVPSRRLRNSVLFVIPFHRSNFGYSNCFHMCLRSFNDVCDEFDFNMSKNVFSVRIRGLD
>CR1_Ele32_pol#LINE/CR1 3-2837  [Aedes aegypti]
LRTKIDALYCNAIDCNYDVIILIETGLDAAINSVQLFGDNFNVFRCDRNAKNSTKSSFGGVLIAVHRRFTSSSISITTGESLEQVCVSVLVGNQRILLCAIYIPPDKSKDVNVMDEHIESVRELRNLSSGNDYLLVFGDYNQPELCWKRCGDEIRPTNSGSISAASSSLIDGMDFCNLHQMNIERNHLNRTLDLVFTSLELSPEITCSVAPLLPTDQHHPPLELDLMLPNGVNNVPTVSNATGELDFTKIDFEALSLFLSETVWHVLLDGLTADNMAETFCSVIANWLNTNVPTRRPAVSPVWGTPLLRNLKRRRNALQRRLRRHRSLENIRSFHRACDEYRELNSSLYKSYVLRVQSNLQRNPKQFWNYVNSKRKSSTIPMSVFLNDSVSSSPLEKCELFAAHFSSVFDAKPASPSEVDSAVSDVPRDLLDLDIFQITPAMVSQAAKKLKCTFSPGPDGIPSAVYCRCMSALAEPLCRIFNQSFVDSTFPAIWKQSFLVPVHKKGEKRNVINYRGITSLSAASKLFEMIVSDVILAQAKGYISIDQHGFMPGRSVTTNLLDFSTTCFEQLENGAQVDVIYTDLKAAFDTINHDILLAKISKLGASNRLSSWLLSYLTGRTLRVKVDSCMSSSFTSMSGVPQGSNLGPLLFLLFFNDVMLLLGHGCRLAYADDLKLYFVVRTVEDCVRLQALLDMFVDWCRRNRMTLSVPKCIVVSFYRITRPIMHNYVVNDVVLKRADSFCDLGVLLDHKLTFNLHRSNVIAKANRQLGFIAKISRDFTDPHCLKALYCSLIRPILESAAVVWTPYQLSWSLRLESVQRKFMRLALRNLPWRDPLNLPPYPDRCRLLDLDTLDRRRKTQQVAFIAKLMNGEVDCSRLLSMLNFRVAPRVLRGGALLQQRFHRTAFGSNEPFTSMIRLFSMFEDLYDFDGSSNQFVSRVRSSDLI
>CR1_Ele33#LINE/CR1 1123-5238  [Aedes aegypti]
CLKISIYAEYEHENDSVATTSNAGIFSDPCYGPELTFINPGRKSIRTMEAPYSPNTVPFFLPTLISRPVPVFGCEEGVFQTVSIGKYTCDVNKTLPVKSSNSSNTSPNYICSRSRHQKHVTIMNNQPSSSIELSTHTESPGCTPASLKGAPNPLVTVEPLLPAFSSHPGPVYEFGGGVFRPAIAGKYTCNKNFNLPVNPVDSSNAMSIASPPSSSSSSTILSCSSHAEPPGCTPASLKGAPNPLVTVEPLLPAISSHPGPVYEFGEGVFRPAIAGKYTCNKNFNLPVNSVDSSNATSIASLPXSSSSSTILTCSSHAESPGCTPASLMEAPNPLVTVEPLLPAFYSHPGPVYENGEGVFQPAQAGKYSQAPTYALPDATEHSSTLGRQEDIMLPPHAVQSPNADAIEIIENSNVMVGNGADRLLSIYYQNVRGLRTKIVQLRLLLSSCDYDVLIFTETWLRADIESSEISTDYTFFRCDRNERTSHHSRGGGVLIAVKNRLNCDSIEMTNYERLEQIVVCIRFQKHSLYIAAIYLPPNSIPELYAKHADAMQFIVEQAEATDIVMSIGDFNLPNLCWQQDDDINGLIPTNVTAEHEQSLIEAMFAVGFRQINSLVNSNSRLLDLAFINLPERVDLTAPSSPLLPMDIHHPPFILLLCENDELLNLADDENYEVKFNFEVCDFELLSDIFGSTDWNALLGNTNLEAMLSAFYQKLNSVFGEHVPKTRRNTRSIFNKPWWTPELRNQRNNLRKARKRFFQSRDDCDRSHLQEIEIRYKTLLLSTYESYISTVQSSLKQNPSRFWEFVKNLQSSNRIPPSVTYNGIEAHNTSEAADLFAEFFESVFSKVSPVQRSNIFAHLQEHDFSFPDLQFSPDEVLEALRDLDIKKGPGTDGIPPLVIRNCAAALCIPITCIFNCSLRERTFPAAWKMAYIVPVYKSGSRNHVSNYRGISILCCLSKILEKLIHKTLSNTLTSIISESQHGFMKNRSTTTNLMSYVSTLFREVEARQQVDSIYVDFAKAFDTVPHIVVIEKFKRLGFPRWLTEWLYSYLTNRYAFVMVNSTRSRTFNITSGVPQGSVLGPLIFNVFINDLYSLLSSCNLSFADDLKFYRTISSPQDCIALQEDIDIMLIWCDNNGMRVNSGKCKIISFTRCNTSYQHRYFIGAEELVRVNSICDLGVTIDFKVRFNEHIGLTVAKAFSVLGMIRRHTNSFTDVYALKTLYCSLVRSILEYASPVWCPSQVTQILSIERVQKKFLRFALSRLPWNDARNLPSYHERCQLIRLESLSARRTNQQRLFIFDLIKGGIDCPALLELLSFNAPSRRFRNAVLLYIPNHRTNYGYNSSLSSCLRAFNDVGDKFDFDVTKNIFLNRIRN
>CR1_Ele33_gag#LINE/CR1 392-1225  [Aedes aegypti]
MAKNCGTCSKAINGIDVVVCRGYCGGFFHLNECSGVTRAMQSYFTSNRKNLFWMCDNCAELFENSHFRVISNQADEKSPLNSLASAITELRTEIRQLHAKPVAYPSPAESPRWPSFDQRRGTKRPRIIETNVRAQDSCRVGSKKAEENVVSVAICKSEADNRFWLYLSKIRPDVTTEAVCEMTKANLNMENDPIVVKLVPKGKQIESLSFVSFKIGLDPLLKRKALDPETWPEGLLFREFVDYSASKFRSTLNMNTRMTPLLQPQTPVSSVTPVMDLS
>CR1_Ele33_pol#LINE/CR1 1264-5238  [Aedes aegypti]
MEAPYSPNTVPFFLPTLISRPVPVFGCEEGVFQTVSIGKYTCDVNKTLPVKSSNSSNTSPNYICSRSRHQKHVTIMNNQPSSSIELSTHTESPGCTPASLKGAPNPLVTVEPLLPAFSSHPGPVYEFGGGVFRPAIAGKYTCNKNFNLPVNPVDSSNAMSIASPPSSSSSSTILSCSSHAEPPGCTPASLKGAPNPLVTVEPLLPAISSHPGPVYEFGEGVFRPAIAGKYTCNKNFNLPVNSVDSSNATSIASLPXSSSSSTILTCSSHAESPGCTPASLMEAPNPLVTVEPLLPAFYSHPGPVYENGEGVFQPAQAGKYSQAPTYALPDATEHSSTLGRQEDIMLPPHAVQSPNADAIEIIENSNVMVGNGADRLLSIYYQNVRGLRTKIVQLRLLLSSCDYDVLIFTETWLRADIESSEISTDYTFFRCDRNERTSHHSRGGGVLIAVKNRLNCDSIEMTNYERLEQIVVCIRFQKHSLYIAAIYLPPNSIPELYAKHADAMQFIVEQAEATDIVMSIGDFNLPNLCWQQDDDINGLIPTNVTAEHEQSLIEAMFAVGFRQINSLVNSNSRLLDLAFINLPERVDLTAPSSPLLPMDIHHPPFILLLCENDELLNLADDENYEVKFNFEVCDFELLSDIFGSTDWNALLGNTNLEAMLSAFYQKLNSVFGEHVPKTRRNTRSIFNKPWWTPELRNQRNNLRKARKRFFQSRDDCDRSHLQEIEIRYKTLLLSTYESYISTVQSSLKQNPSRFWEFVKNLQSSNRIPPSVTYNGIEAHNTSEAADLFAEFFESVFSKVSPVQRSNIFAHLQEHDFSFPDLQFSPDEVLEALRDLDIKKGPGTDGIPPLVIRNCAAALCIPITCIFNCSLRERTFPAAWKMAYIVPVYKSGSRNHVSNYRGISILCCLSKILEKLIHKTLSNTLTSIISESQHGFMKNRSTTTNLMSYVSTLFREVEARQQVDSIYVDFAKAFDTVPHIVVIEKFKRLGFPRWLTEWLYSYLTNRYAFVMVNSTRSRTFNITSGVPQGSVLGPLIFNVFINDLYSLLSSCNLSFADDLKFYRTISSPQDCIALQEDIDIMLIWCDNNGMRVNSGKCKIISFTRCNTSYQHRYFIGAEELVRVNSICDLGVTIDFKVRFNEHIGLTVAKAFSVLGMIRRHTNSFTDVYALKTLYCSLVRSILEYASPVWCPSQVTQILSIERVQKKFLRFALSRLPWNDARNLPSYHERCQLIRLESLSARRTNQQRLFIFDLIKGGIDCPALLELLSFNAPSRRFRNAVLLYIPNHRTNYGYNSSLSSCLRAFNDVGDKFDFDVTKNIFLNRIRN
>CR1_Ele34_gag#LINE/CR1 434-1222  [Aedes aegypti]
MACNKCQETIADTERIICRGYCGHSFHLTCVRMDHSFRDVQVAHERNVFWMCDGCADLFSSDHFRKISSRYSNEIVHDEASIKCLKDDIAELKQIVGLLSSKVEAKPTTPIMSTPWSGLNRMRSSSNVPNTPKRQRVESLPMERPTIIRGSKAASELVKTVSPPEELFWLYLSAFDPCTSEXDVSNFVRNCMGLSAEVEPKVVKLVPKDKDPATLNFVTFKVGMKLSLKTSALSKETWPENIYFREFENQPKNQRKIVRVTAE
>CR1_Ele34_pol#LINE/CR1 1438-4902  [Aedes aegypti]
MFVVSSSPASISFHRTSTFGSPGRTPASSLLEASDSPNTVVPLLPATCSRPGPVFGSEEEVFQHSSAGKYITPTNYSLPEIFVVSSSSMSNDSCCTSSFLPPGRMPAPSLLEASDSPSTVEPLLPATCSRPGPVCGSEEEVFQNPTAGKYTVPPLSCSRTEIRVVSSFYDDAPTATPASSCSIAHPTNQDITIYYQNVGGMNSDIDDFRVAISDHCYDIIVFTETWLDSRTLSHQIFGNAYEVFRCDRNADNSRKTTGGGVLVAVNSRLKTKKVESPSWVCLEQVWTSIKLGDRSLFLCALYIAPDRIRDRELIETHCQSVYSVLESTKAKDEVIVLGDFNMPGISWEKSSNGFLHPDIGHSVIHSNASFLLDNYSSATLSQINHVTNQNNRRLDLCFVSTQDTAPFLCEAPVPLVKLTLHHPPLLLAIGSKLPHDYVISPNVVYYDFRKADHRGIAQLLSGFDWSVILDSDDIEEAAQTFSNVLSYVLDRHVPKKVQHHSFRPPWQTSELRRLKSKKRAALKKFTTHRTPLLKRHYARVNNEYKQAAKDCFLRYQRGIQTKLKYRPKQFWKHVDEQRREAGLPSCMSLNGNVASSPQDICNLFADKFASVFNDEILSDEHITLAAANVPQFGQTLSSVDINEDMIIRASSKLKTSYNPGPDGVPSSFLKTHMRDLISPLLHVFRLSLTLGVFPSTWKLAHMFPVHKSGNKHDVGNYRGITSLCAVAKLFELVMMEPLLAHCKPYISVDQHGFVTGRSTATNLLCLTSYITESMSKRFQTDVIYTDLTAAFDKLNHNVAVAKLDRLGIHGCFLQWLQSYLTGRHLAVLIGDCYSSSFAATSGIPQGSHLGPXIFLIYFNDVNLVIEGPRLSYADDLKLYLRIRSIDDCYFLHQQLNAFADWCNLNRMEVNPAKCSVISFSRKKQHILHSYTLSGEVIKRVSQVKDLGVILDAQLSFKQHVDYAVGKASRVLGFIFRTAKEFTDIYCLKSLYCSLSRSILEYCSVVWTPHYNNGVLRIESVQRRFLRYALRRLPWSDPFRLPSYQSRCQLIDLESLSVRRDTARALLLSDVLQGRIDCPYILNEININVQPRALRNRSMLRLPLQRTNYSTHGAINGMQRVFNRVATLFDFNLSRHSLRTRFSSFFFKCFLICPFL
>CR1_Ele35_gag#LINE/CR1 409-1257  [Aedes aegypti]
MSLVCCSCAGDIGDIQVECQGFCKAIFHPRCCAVAADVFEEVMRNNQLFWFCPSCTALMKDMRLRNTARAAYEVGQGHALNSHSDIMKNLKTEIMDELKAEIRTNFAKLINSSTCTPKSSKRVGVDPRFTRSRRLFSTVAKSIPNQQPPLLLGTGSTPSPSLDIVTVPPNQPKFWLYLSRIARDVSVNQICALAKKRLGTDDVQVIRLVGKGRDMSTLSFISFKIGMNMEMKSKALSTSTWPKGVVYREFTDNRTDENFWRPVPAAASDDPLSLSTEDVVLME
>CR1_Ele35_pol#LINE/CR1 1263-5066  [Aedes aegypti]
MEEVNSYSSPGRKLATSIKEASVPLTAVEPLPPATSSRPGPACEKEDEVFQNFSTGKYVILPRTSSAVPFVDFSISPSIQILPTSSSWTPGRIFAACIKETPTLLTAVEPFPPTTSSRPGPACEHEDGVFRTPTTGKYADLSSISSAVSFVVSSITSSIHSRSTSLKSTPGRTFSASLKEAPIPFTAVEPFQPATSSRPGPACDLEDGVFRAPMKGKYTDLPSISSAVSFVDSRNLVPKDALTDSRLYDLWTTALGDPQLAIAGPSRNSACFSAIPKLQLTAKPSIPFNVSGGSTQHKRPERCPENPSDMPFDLRIYYQNVRGLRTKIDDVFLSTAELDYDVYVFTETWLDECIESRQLFSPDYSVFRVDRCATNSSRRRGGGVLIAVKEKFGTTVVSTRANIEQLWVKMSTQVTDIFIGALYIPPDKSQDGTFMQLHLDVISEVCSSRSDASPLVVFGDFNQPRLAWLLSNGYAIVDALNSHISSASQILLDNMAFQGLRQRNSIRNSSGRVLDLVFSDDSSKKSVLATPATEHVVPLDRYHPALDFSVQIPSSMTFYEDIDLSERDFRRCNFDALNSLLSQVDWSEVHQCSDVDSAVTCFNAIIHNYIAETVPLNRPPRKPAWSNRHLGVLRRRRDKLLQQYNRQKCAHFKRQLDEASRIYRGYNRFLYKNYVSRKQNDLRRNPKSFWNFVNSKRKEHGLPTTMHRGDVFTSSQDEKCALFAQQFSSVFVGRIPTVQDTEAATCIVPRDVVDLDIFHVNESMVYAALQKLKLSNCPGPDGIPSCIFRKCGASLVAPLVSIFNKSLQSQLFPTAWKTSYMRPVFKKGDKTDFANYRGITSLSAGAKCLETIVNKVMFSSFCCYISEAQHGFFPRRSVESNLVDFTSTCIRSMDNGAQIDAVYTDIKAAFDTVNHEILLAKLLRLGVSTRMCNWLQSYLRNRSLCVKVGSTVSHPFHPASGVPQGSNLGPLLFSLFFNDVTIVLANGGLLIYADDLKIFLVVRTEADCRDLQELLNQFARWCTMNFLAVSVSKCCVISYRRCKSPILYDYNINGQELERVDKVKDLGVLLDYRLTFKLHYATIIDKANRQLGFILKITKEFNDPMCLRSLYCSLVRSILEFASIVWSPYEAVWITRIEAVQRKFVRHALRDLPWRDPLNLPPYDHRCRLLGLEPLHVRRKNSRAVYGSKIVRTEVDCPALLQHVQFYAPERVLRTRQLIQIASRNTGYGANDPLNSICNEFRQAYGVFDFNLTTNTFRQRLSRTRFIN
>CR1_Ele36_pol#LINE/CR1 335-3769  [Aedes aegypti]
MEAPNPSNSVEPRRQHQXSRPGPVVETEERGXHRAPFGKYRSVSFTSQTETTSALSNDPSHSNNIETQSHPGPVFGDMEGVYQSITSGYSSDENYARNSTSQPWRIVESILEAPGSSASVVPTPALAHHSRLXPGGNCSPGVFQPALAGKYIHDLAHTSPDSASNFSSMAGSTNTSPLTSRVSSQQDIIVYYQNAGGINSDVDEFCVAVSDNVYAIIVITETWLDSRTLSRQVFGNDYEVFRCDRNTNNSRKAKGGGVLVAVRSTFQARELENEAWRSLEQVWTSIKLGDRTLFLCALYIPPDRVRDRALVETHCQSVLSVIEMANATDELIVIGDFNLPGISWKTSHSGFLFPDVDHSVIHANASFLLDNYSSATLSQINHVTNQNQRSLDLCFVSAQDTAPFLCEAPSPLVKTALHHPPLQLSIKTTLLHDFNISPAAVSYDFRKADHRNIANLLSSFNWDDILGNSDIDTAAQTFSNVLNYVIDRHVPKKSHHPPSRSPWQTNELRRLKSRKRAALRKYTKHRTTSLRRSYVQINHEYKRVAKRCFLQYQQGIQRKLKACPKQFWKFVNEQRREAGLPSSMMLNGNVASTPNDICQHFARKFASVFTEDRLTEDDIQLAANSVPLLSENMDAIDIDRNVIARACSKLKKSFNPGPDGIPSAFLKEHLDSLLTPLLLVFQLSVTVGVFPSCWKLAYMFPVHKKGNKRDCNNYRGITSLSAIAKLFELIIMEPLFSHCKPYISTDQHGFLAGRSTATNLLCLTSYITNSMSERAQTDVIYTDLTAAFDKLNHRIAIAKLDRLGINGSLLQWLQSYLTGRHLFVDLGDCQSPTFAVSSGIPQGSHLGPLLFLIYFNDVNLVIKGPRLSYADDLKLFLRIRSTDDCRFLQLQLNAFADWCHLNQMDVNPLKCSVISFSRKKETIVHKYALFGQDIERVNQIKDLGVILDIQLSFKQHISFVVDKASKILGLIFRISKHFSDIYCLKSLYCSLSRSVLEYCSVVWTPHYNNGVERVESVQRRFLRFALRRLPWSDPYRLPSYESRCQLIRLEPLSVRRDTARALFIADILQGHIDCPALLEQVNINVQPRALRNNVTLRLPLQRTNYSMFGAIYGLQRLFNRVAALFDFNLSRQLLRRRFSSFFDRS
>CR1_Ele37_gag#LINE/CR1 346-1203  [Aedes aegypti]
MSSSAACDHCAKPIKCEEDCVTCMAFCERMVHLKCTVAKLNKAFVRIVHENPNLMWMCDECAKLMKIARFKSTVSSFGEAINAITEKQESVHAEIKKELAKQGQQIAQLSMRITPLTPILSQEPGTSSRQPPLKRRRDDGSVSNKPLVGGTKIVADANVLTVPEPIELFWVYLSRIHPSVKPDAVEQLVKDCLHCEGIIKAIPLVKRGIDTNRLNFISFKVGIDPSLREAALNADTWPKGILFREFEDSTSKNLWLPRQNTPAILISPDPASSPFSTPVSGIVPSC
>CR1_Ele37_pol#LINE/CR1 1248-4919  [Aedes aegypti]
MGALEPLDTVAQAASRHLSRSGPVVEYGNRVSQPSHTGKYSSFSSSSPLDQFSRSSAVDPSATTSNRLYSQIAATMASSYLESADNYLISIDGPSIEAHCATQLFSQPGRTVYSFLEAPDSSSEVVPSPAIAQHSRPGPLARCGSGVFHRALTGKYIQASVPSSPDAPSIFSVNDDISTSSAAGQPERIVESFMEALDPSATVLPLAAHVHHSRSGPVVGNGERVFQQPDSGEYSPVSTCTHSTPDALLHSRISEPSAATSKLDIVLYYQNVGGMNTSIDDYRLAVSDACYDIIVLTETWLDSKTLSNQVFGSGYEVFRCDRNPNNSCKRTGGGVLVAVRSGLRVKALDNGLWRCLEQVWVSIQFDGRTLFLCALYIAPDRVRDVELINAHCQSVFSMMESASPTDEIIIVGDFNLAGVSWKPSHSGFLYPDPECSSFHACAINLLDSYSAATLTQINHVVNENNRSLDLCFVSFQEKAPIISEAPCALVKDVAHHPALMISIEGYQISEFDDRPASVSYNFVKADHRSIADVLSSIDWATILDPRDVEVAATTFSNVLSYVIDRHVPKRIHLQDAHPPWQTKELRQLKSQKRAALRKLTKHRTLPLRDDYVRINNEYKRLSRLCYSQHQRDIELKLKNKPKSFWKFVNEQRKESGLPSSMELNGEIASTTQEICQLFAEKFANVFNDEGITEDQVSRAASYVPLNGESLSAIDVQFDAITKATSKLKSSNNPGPDGVPSALLKKHIDNLLVPLRHLFQMSLSSGTFPSCWKTAYMFPVHKKGSKHDVNNYRGIAALCSVSKLFELVVMEPLLSHCQQYLSPDQHGFTAGRSTTTNLLCLTSYITNSMTERTQTDVIYTDLSAAFDKLDHAIAIAKLDRLGVSGNLLCWFRTYLTGRQLLVSIGDFKSSSFSASSGIPQGSHLGPLIFLLYFNDVHLLIKGPRLSYADDLKMFLQIRSTTDCHFLQQQIDAFANWCSLNRMVVNPVKCSIITFSRLKQPTLFAYSLYGTIIERVNHVKDLGVIMDSQLSFRQHVSYTVDKASRTLGFIFRIAKNFTDIYCLKSLYCSLVRSTLEYCSAVWCPAYNNGAERIESVQRRFLRFALRKLPWTNPFRLPSYESRCQLIDLELLRTRRDTIRALTIADTLQGRIDCASILEQIDLNARPRLLRNSSLLRLPLRRTNYSTNGGINGLLKLFNRVASIFDFHLTREFLRRRFSSFFAGRNN
>CR1_Ele38_gag#LINE/CR1 280-1140  [Aedes aegypti]
MSDACDHCAKPVRNDDEYISCMAFCERMVHIRCSVTKLNKPFVKIIQESPNLIWMCDECVKLMKIARFKSVVSSFGEAIQSITEKQESVHAEIRKELAKQGQQIALLSKRMTPSSPFLREPGSSFQQPPSKRRRDEEFNFKQVATKPLLGGTKDTTTASILTVPEPEELFWLYLSRVHPNVKPEAIEKLAKDCLQCDKPIKAIPLIKRGTDTSRLSFISYKIGIDPKFRDAALSPDTWPKGVLFREFEDQSSKNMWLPRLHTPTITVSPEIGASQFSTPTSVVNLAN
>CR1_Ele38_pol#LINE/CR1 1155-4889  [Aedes aegypti]
MQRSNVATSVTKCRKPERFACRIKGALDPLDTVAPACSCHRSRSGPVVEIGDGVSQPSISGKYACFCSNSLPDQLQFFSFPSDLVDHNNIDTGTQYSIQLNPNNQSTPTTTEHQVERSFTSSSQPGRSAASILEVSGSSSSVRPFPASVLHSRPGPVARCGSEIFQSALLGKYTQVSAFPMPDAVPNFSILDSTDASDASSTLTHGHPERTVESHMEALNPSDAVQPPAVVVLHSRSGPAVGSGARVFQPLNNGEYSTYVSSQSMPDAHVPSRNIGVSKVRRKEDIVIYYQNVGGMNSRVNDYRMAVSDSCFDIIVLTETWLDSRTLSSQVFGTDYEVFRCDRNPNNSRKLTGGGVLVAVRSRLKAKLIEKESWKCLEQVWVSIKLGDRSLLLCTLYIAPDRVRDNELIEAHCDSVITAMESANPVDDVFILGDFNLPGISWLSSQNGFLYPDPVHSSMHDCAVSLLDSYSAATLAQINHVVNENNRSLDLCFVSVQDQAPFIGAAPCELVKAVPHHPPLIIAVENNQAHDFDNCPAGVSYDFSKADHRSIAAVLADINWDNVLDLRDINTSAQTFSHILTYVIDRHVPKKVVHHDSRPPWQTSELRKLKSVKRAALRRYTKYRTPSLRSYYLRVNYEYQRVSRHCFLQYQRSIELKFKRKPKSFWKYVNEQRKESGFPSSMEWNGKSSSCLQEICQFFASKFSSVFSGESISNDQVICAANNVPMNGQALGSLDLDINAVSRAASQLKSSNHPGPDGVPSAFLKEHIGNLLAPLCCLFRLSLSSGIFPSCWKVANMFPVHKKGRKRDVDNYRGITSLSAVSKLFELVVMEPLLSHCKHLLDSDQHGFIAGRSTTTNLLCFTTFITDSMIARVQTDAIYTDLSAAFDKLNHDIAIAKLDRFGVCGNLLSWFGSYLTNRQLRVVIGDCSSDSFHATSGIPQGSHLGPLIFLLYFNDVHLVIKGPRLSYADDLKIFLRICSVADCLYLQQQLDSFASWCSLNGMVVNPTKCSIITFSRKKQPITFDYSLLGTKIERVNHIKDLGVFLDSQLTYKQHISYTVSKASTTLGFIFRIAKNFSDIYCLKSLYCSLVRSTLEYGSAVWSPIYNNGAERIESVQRRFLRFALRKLPWRDPFRLPSYESRCRLIDLDLLRNRRDTFRALTIADVLLGRIDCGTILERVHLNARPRSLRNSVMLRLPLTRTNYGLHGALSGLQRVFNKVASLFDFNTTREMLRRRFLSFFDERRV
>CR1_Ele39_gag#LINE/CR1 360-1259  [Aedes aegypti]
MTAITACDRCAKTVKRNENFIECMGFCNNVVHMKCDNLNIEFIATIRERPNLFWMCDECTKLMKVTRFKSVVSSLGCAISTVIENQMTGISELKAEISKNNQQVAEVIVENNNQVAQLANIVNASTPVPAPNRERPSKRRREDTETSNAITLGTRNIASDIAVAVKPAANLFWMYLSRFHPSVKEDVVENLAREGLQTREPLKVVSLVKKGADLSSMNFISFKVGVPVELKDVALNPNTWPEGILFREFEGQSKNSVWLPPAMSTTTRDGTPFGTPAPVPTPTFDAPISITIPTTISDEA
>CR1_Ele39_pol#LINE/CR1 1313-5107  [Aedes aegypti]
MMEAPNLPNSVAPSAVFAHHSRLGPEVGGGNGVFHPACPGKYFSNKSSSAELSLPQIESNSRTVSTADSILNFWTLRRTIGHASTICGHPGRTNESILGGSCSSNSVAPIAASVLHSRPGPVVRCGFGVPNLSCQASTTSTVHRAIILRLILVRLXVLYDQLIPHHIRSTFTAPASSHELHCGPPGRTVESFLGAPSSSISVVPIAASVPHSRPGPELRCGMGVSQLAFLGKYNGFCDNSLLDSDSHSSTTEITPTPTSHQAGIINRSLPTSTVSSNLSGRDSKEADSHRFSRRSDIDNHRSAVCRKHZLVIFYQNVGGINSEVNNYYLAVSDTCYDVIVMIETWLDDRTLSNQVFGSDYEVFRCDRNPHNSRKSTGGGVLIAVRRGLKAKIVEDDEWISLEQVWIAVELNDRKLYLCAVYIPPDRIRDIDLVRTHCRSISSVVEMSSPLDELMVLGDFNLAGISWKPSHGGFLFPDSRQSVLYPAAIHLLDSYSASTLSQINHVLNENQRSLDLCFVSTQDTAPFISEAPVPLVKHVSHHPPLIVNIPKCLDRDFIDFPEPVSYDFRKADHRSITDVLTSLDWDVIFDTDDANSAALTFSHVLGYVIDRHVPKRSQQLNRLPWQTSELKQLKTIKRAALRRYTKYRTVSLKIQYVRLNYEYKRISRLCYSRYQQNIQGKLRSHPKSFWKYVNQQRKETGLPSSMTWNNLTASDPQRICQLFSSKFADVFTDETLTDGQIAIAATNVPLYAQTLSTIDISVEMISTAASQLKPSFNPGPDGVPSAFLKKHISNLLMPLHRLFRSSVSSGIFPSCWKIAHMFPVHKKGSKRNMDNYRGISSLSAVSKLFELIIMQPLLSHSKQYLSDDQHGFMVGRSTTTNLLCLTSFITESMVERMQTDVIYTDLSAAFDKLNHSIAIAKLHRLGVSGTLLQWFRSYLSGRQLMVTIGDCTSETFPATSGIPQGSHLGPLIFLLYFNDVNLVLEAPRLSYADDLKLFLRIQSVNDCHFLQRQLGIFANWCSINRMLVNPEKCSVITFSRKKEPIYFDYELSNTTIKRTTHIKDLGVILDSQLNYKQHMSYAIDKASRALGFIFRMTKHFSDVHCLKSLYGSLVRSILEYCSPVWNPYYNNGVERVESVQRRFLRFALRKLPWSNPFRLPSYEDRCRLIGLELLRVRRDTSRALLVADILQGRIDCSYLLQQININVQPRALRNSVMLRTPLHRTNYGLNGAIGGIQRVFNRVSASFDFHLPRSTLRRRFVSHFAE
>CR1_Ele40_gag#LINE/CR1 383-1240  [Aedes aegypti]
MTSACDHCAKPIKGEDESVSCMAFCDRMIHLRCSVTKLNKNFVNIVQTCPNLFWMCDECVKLMKCARFKATVSSFGDAINAMTERQELAHAELRKEIAKQGEQIAKLSKGIALSTPTLSGSGGLVRQPPLKRRRNEGLSTSKPLVTGTRIVADDNVFTEVRTVPEPPEMFWLYLSRIHPSVKSESVEKLVKDCVHCQDPVTVVPLVKRGADTSRMSFISFKVGMDSKFRETALNSDTWPQGILFREFEGTGSKNMWLPQLTTPTISITPAMERSPFVTPTTSMDQR
>CR1_Ele40_pol#LINE/CR1 1501-4938  [Aedes aegypti]
MHQATLPGRTTESTLGVASYSSSVAPFAASVLQSRPGPESSCGLAASQSAISGKYNDDRELSLPDTNQIYSTSGYTSSSSPYPDLTLEEVLHGLAEDISLGTPTATNADSSSFDMRSNNEHRFQHPGRTILSTTGAPLSPSTVVTMQPALDSRPGPVVGCGEGVSQPVQSGKYTECADSILPDDLIPSSLRIYYQNVRGLRTKIESFFLAVTELDYDVIVLTETWLDHRILSAQLFGSHYSVFRTDRSALNSNKSRGGGVLIAVSSQFNCCSDPTPVNDQLEQLWVRILLPDRNVSIGVFYLPPDMKNDADVIRCHIESIAAVHNNLSENDLILQFGDYNQSDIYWAAEADNRLSIDLDRSRMCPASSALLDGFCFHGLSQVNTLTNTTNRTLDLVLVCDTVLPNFTLLAAAEALTTLDDHHPAIELIVMCPLPVTYEMSHDYTGFNFQKANFESLNVALMSVDWNHLDSIPDINEAVDFFTNSVLQAVTNNVPPRRPPSKPPWSNGQLRLLRRRRSAALRCYCNNRSQQTKLAFNEASREYRNYNALLYARYKRRTEQNLRTNPKQFWSFINSKRKENGLPTSMYLDEQSADCASDKCELFAAQFQRAFNNFVAAPSQVHVALDDTTRDVFSYEMFEISEREVASAITKLKPSYTPGPDGIPPALLKRCSALLIPLVKLFNRSLGCRVFPRSWKMSFLFPIHKKGDKRSVSNYRGITSLCVCSKVFEIIINDSLFNSCKQYISSDQHGFFPKRSVTTNLVEFSTQCIRAIDAGKQVDAVYLDLKAAFDRVDHGILLQKLRKCGVSDSFIDWFESYLTNRSLCVKIGSNESSSFTNLSGVPQGSNLGPLLFSLFINDASLVLPPGTRLFYADDTKVYMIVDSLDDCHHLQRLLNDFEAWCSRNCMTLSIEKCQVISFNRKRNPIHFQYTLSGTAIERVQRVRDLGVWLDEEFTFNYHFNDIVSRANKQLGFVLKVTEGFSDPLCLRSLYCALVRSILEFAAIVWCPFHASWITRIESVQRKFLRHALRNLPWRDPSNLPPYEDRCRLLGIDTLENRRCVSQAAFVAKLLQGDIDSPSLLADVSIYAPERNLRRRNFVSLGSRNTLYGQHDPTRYMATKFNEIYHLFDFNITMTTLRNRFAEYFRHS
>CR1_Ele41_pol#LINE/CR1 2-3277  [Aedes aegypti]
SQPALPGKYACYTRRSXRDELPNFSSLSAADVTSMTPKCNPVMSSNGQQPGRSVESLMEAPGPSDPVERNAVTVLHSRPGPAVGCGTGVFQSATSGEYSSIIDNAPSPSIVLNSRTCNARKMPISVNAKKSDDLLIYYQNAGGMNCDVDKYLLATSDDCYDIIVLTETWLDTRTISTQVFTPEYEVFRCDRNPRNSRKSTGGGVLIAVKKKLKANIIENDLWCSTEQLWVHVQFFGHSLFLCGIYIPPDRARDETLIETHLQSVTSVIEIAKPMDEIVVLGDFNLPGISWISSGNGFLHPDMNHSHVHSAASRLLDGYSTATLRQINHVTNENLRSLDLCFVSAQDVAPPISNAPSSLVKQVNHHPPLVLKLIVQHYSTSESIAQVTYDFTKADHEGILEFLAAVEWTEVLDTRDVDNAVSTLAHILGHVIERHVPKKTLASKGLPWQTRELRTMKTAKRTALRRYTKNPTPRMRDQYVRLNAAYKRTSRHCFNRYQQQVQRDLTAKPKSFWRYVNEQRKVSGLPPSLFLNGDVASEPQSVCQLFAQKFSSTFCDEVIPEVLVTQAASNVPLVNDSWATLTVDDDMISRAASQLKSTMKPGPDGIPSAFLKRHIDSLLVPIRHVFNLSLISGAFPSLWKNASVFPVHKKGERKDVNNYRGISSLCAISKLFELVVMDPLMTHCKNHLSDDQHGFISGRSTATNLIRLTSHIADSFAEGAQTDAIYTDLTAAFDKINHAIATAKLERFGISGNMLRWLHSYLIGRKLTVTIEGFQSNEFLATSGIPQGSHLGPLIFLIYFNDVHYTLKGPRLSFADDLKIYRRIHSDYDAMCLQQDLHAFASWCTLNRMTVNPGKCSVISFVRIRRPVVFRYELYNTVIQRVDSVKDLGVILDPQLTFKHHVAYVVAKASRTLGFIFRVAKDFTSVYCLKSLYCSLVRSTLEYCSVVWNPYYQNGSDRIESIQHRFIRFALRQLPWRDPLRLPSYRSRCQLIDLETLQLRRDIARAMVVADTLQGRIDCPVLLQSLDLNVRPRVLRNNTMLRLPFRRTNFGQQSAYIGIKRVFNRVASVFDFHLSRQTIRRKFKTVFLSFLDE
>CR1_Ele42_gag#LINE/CR1 605-1468  [Aedes aegypti]
MVCKRCQKKVSGDDGVVCRGYCGASFHAFCVNVDEPLRKQLGQYRNNVFWMCDGCANLFGNAHFRALMTGFDEKSSMVPSAIQSMQCEIEKLHASVKTLSAKVDGMPTTPTPFSTPNPWPAIHRINRFTKSAKRFRDTDGNPVNVEDGSMKMGTKTTNPCSTICLDSRQEDELIWIYLSAFHPNTTESQISSFVTECLELTANAHLKVIKLVPKGKDLNTLNYVSFKIGLSVQFKEKAFSCESWPENIRFRQFEDNRAKNLPRVISLSSTVQQGITVPPPMDSSSLDI
>CR1_Ele42_pol#LINE/CR1 1510-5754 May be way too long. [Aedes aegypti]
MGTPSDPVTVEPNHHATSNASVFASCHLRRPGPVYGGLEGVSQPAFSGKYAYHNGHSLGDISNNSSSSENDDPPANLHQNSFSTSQFHLPGRNGEGLMEAPGPSDPVEQSTASVLHNRPGSVISCGAGVFQSVSSGCLTRHSHYGPKLINPSSSSFMPSSLTSSKAPGCTPVSLMEAPYPLVTVEPFLPATSSHPGPVYECGDGVFQTTTAGKYSHNMNILPPVTSVASSCSSSTSSACGLPITDILDVSISAKWTPGRTLAASHKEAPIPLSVVEPPLPATSSRPGPTSELGDGVFRTQISGKYDDFMSFPYPEPIVASSPSTIFAPSNAILSQQPTSIVRSCPDENIQSHNLDNRIPSSQPPLSANWTPGRILAASLEEAPIPLSVVEPPPPATSSRPGPTSELGDGVFRTSTSGKYDLHPVFPEPESISNSSTSNLVLPPEATSRNSTSAPASSDVLLYYQNVGGINTSLAEYQAAVSDGCYDVYALTETWLNGNTLTCQLFDASYSVYRQDRSSLSSNKSTGGGVLLAVRSNFKSRSLSPPNNALVEQLWVAISTVDGTLFICVVYIPPDRVNDAALIDKHVESLSWITSQLGARDKVIILGDFNMGSISWQRHSLGFYYPIASRSSISQTSRDLLDAYSTAGLKQAIGIENEHNRMLDLCFVSDQLLESCTIIQAPSPLVKLCRHHPPILMNFQIYPIRHFHNTAESISYDFNKANFNGMNAFLAHVDWDEILRDYDANLAASTVSGILLYAIDQFVPVKSRPEAAKPPWSNAHLKNLKRVKRAALRRHSKFRTDTTRASYMKANQDYQQLNDHLYNAYQNRMQRQLRTNPKSFWRYVNDQRKESGLPSTMNDGSSVADSIGGIADMFRSQFSRVFTNEHLDSHDVALAIRNVPRLPGSGQLCIINDDMVIAASKEIKSSTGYGPDGIPSLIIKRCVDTLAKPLTAVFNLSLSTGVFPNCWKHSYVFPVFKKGCKSSVSNYRGIAALSSISKLFEVIVLRQLVQSYAHYISEDQHGFMPKRSTTTNLTCFISFVTRQIESGQQVDAIYTDLSAAFDKMNHQIALAKFDKLGMNNTLLTWLRSYLTGRSMSVKIADHVSLPFPAWSGVPQGSHLGPFLFLLYMNDVNFVLKCLKLSYADDVKLYYTIKQPQDTVFLQRQLETFAEWCRLNRMLLNTSKCSVISFGRKQSMIPFAYALSGEQLQRESTIKDLGIMIDSKLTFKDHVSYIVSKASAQLGFVFRFAKKIKDIYCLKSLYCSIVRPILEYSSVVWSPYYQNEIQRIETVQRKFIRFALRHLRWRDPLNLPSYSSRCQLINLDSLEARRNVAKACFIGDLLQGNMDCPALLNMLDINTRRRNLRTHSFFNLSVTRTNYSLHEPVRSMSRLFNQCYFVFDFNVSRERNKCNFRRVLC
>CR1_Ja_Tgu_gag#LINE/CR1 2-1045  [Taeniopygia guttata]
LARGEPPRKRAAVQAPGCRECLSLVLXAGGQWEDTCVRCEQVXDLLCPVAELKEEVGRPRSIRECEREIDWWSRILPSLREMQWMEAQQESEEPXPSCHQAEGRDLEDGGEWKQVPARGGXRIPSRPPSPSQVPLQNRYEALDPEGQADDSGEEXLPGGSPRSMRSARRITAARIKKKRRVVVVGDSLLRGAEGPVCQPDPSHREVCCLPGARVRDITRRLPGLIQPSDYYPLLVVQVGSDEVXERSXRAIKKDFXALGRLVEGTGAQVVFSSIPSVAGKNAERNRRTHXINXWLKDWCHRWNFGFFDHGAVYTAPGLLETDGVHLSKRGKRILAHELAGLIERALN
>CR1_Ja_Tgu_pol#LINE/CR1 1030-3903  [Taeniopygia guttata]
EGFKLGLKGEGDKTRLARDEPGGGMPVLGVKSAAQLKCIYTNARSMGNKQEELEAIVQQESYDVVAVTETWWDDSRDWSAAMDGYKLFRRDRRGRRGGGVALYVRECFDCTELEDSDDKVECLWVRIRGKANKADILVGVCYRPPNQDEEADEXFYERLADVSRSPALVLVGDFNLPDVCWKLNTAERRQSRRFLECVEDNFLTQLVSEPTRGGALLDLLFTNREGLVGDVVVGGRLGHSDHEXIEFSXLGEVRRGINKTSALDFRRADFGLFRTLIRRVPWEAALKNKGVQEGWTYFKKEILKAQEQAVPMCRKMSRRGRRPAWLSRELSQELREKKRVYXLWKKGQATQEXXKDVVRSCREKIRKAKAQLELNLATXVKDNKKCFYKYINNKRRAKENLHPLLDAGGNXVTKDEEKAEVLNAFFASVFNXKTGYPQDNRPPELVDRDGEQNRPPVIQEEAVSDLLSHLDAHKSMGPDGIHPRVXRELAEELAKPLSIIYHQSWLTGEVPDDWRLASVTPIHKKGRKEDPGNYRPVSLTSVPGKVMEQIILSAITRHVQDNQGIRPSQHGFRKGRSCLTNLISFYDQVTRLVDEGKAVDVVYLDFSKAFDTVSHSILLEKLAAHGLDRCTLRWVKNWLDGRAQRVVVNGAASSWRPVTSGVPQGSVLGPVLFNIFIDDLDEGIECTLSKFADDTKLGGSVDLLEGRKALQRDLDRLDRWAEANGMRFNKAKCRVLHXGHNNPMQRYRLGAEWLESGPAEKDLGVLVDSRLNMSQQCAQVAKKANGILACISNSVASRTRAVIVPLYSALVRPHLECCVQFWAPXFRKDIEVLERVQRRATELVKGLEHKSCEERLRELGXFSLEKRRLRGDLIALYNCLKGGCSQVGVGLFSQATSDRTRGHGLKLRQGRFRLDIRKNFFTERVVRHWNGLPREVVESPSLEVFKKXLDVALSAMV
>DMCR1A_gag#LINE/CR1 435-1466 [Drosophila fruit fly genus]
METVNVVCFYKNCCQVIKPEQPKMTCWLCDRMVHTKCAGFNGRTSDDLAKGKNLNYCCDACLVVANEMKSFMRQTKGGLKELINSFGVARDSFRRADDLLSALNSQFNGLKLLDESPKRKKAAGGRLPKAPQPRANDQQDSTTDQLSIAANPHMLLRSAAKKDSEQSDQSAVEGAHPVIAKDSELSALVSQPVIPPVSISLPPQGNIESGLPAQVGTSEIQSAGPKPLAVVPLKKQIFVSRLSPDQTSSDVLSYIQDKTKADNIKVEKFNFSYARDISSFKITVPNELFSTICSGDFWPDSMVVKEFEAKIKNRKKGPVGIKLPSRGQTTAPSASSSSSSSKN
>DMCR1A_pol#LINE/CR1 1400-4294 [Drosophila fruit fly genus]
TSLTWPDHCTIRLFIFFLFKKLTTNLTISYQNVRGLRSKLTKLYCDSLSFASHIIVFTETWLKPEILNSEVFPGMYTIYRYDRPSRRGGGVLIAVRSTLASEELLLDESRNSEFLCVKLSFSDRSVYITCSYIPPSSEFPEYQNHLSAIQSILNKLSDRDQLVVLGDFNIPGTMWSPEKQSNILLPLAQHDFIDGLLDLSLSQVNYIPNSLGRLLDLCFVTSPESVFLSRVAPLTQPEDPYHPTFEVAIDIGTVLKVNSEKSTKRIPCFRKANFRRLNNFIAGFNWSDLYSCNIMADAINMFYTAIKSFFDSCVPMYYPSISKPPWFNKELTHLRNVKSRLYIKFKNTGSQSILCKYLSARLNFTVLNAQCYKNYLNRCKFQFAQDPKQFYNFVSTKRKTSSYPSSLFFENTTVTSDQAIADLFAKFFQTTYSTLPHSEQPYSYAVSKSNLIFCPTINESSLLNDLQRVKPVYSPGPDGIPGCVLRFCAEALCKPLLKLFTLSLESSQFPHIWKESFVIPLHKKGSKLDASNYRGISKLSAIPKLFENVITPHLQHLCRSIISPCQHGFMKRRSTTTNLLELTSFVIQGFKNNLQTDVIYTDFSKAFDSVNHYLLIRKLDLLGFPVDLLNWISSYLNGRTQQVLFKNSLSCILRVTSGVPQGSHLGPLLFTLFINDLPLIIKHSRVLMYADDVKLCLQHKDTSCHLDLQSDLDRFQIWCRDNVLDLNGSKCKVMTFCRANPIRTTYTLSGCSLDRITRVDDLGVLLDPKLKFSDHISSIVNKARGVLGFIKRWSKEFDDPYLTKTLFISLVRPILEYGSPVWSPQYAVHSDRIESVQKNFLLFALRRLNWDANRILPPYSSRLLLINLPSLANRRTMLGTVFICKLIRGDVESPDLISRLNFSVPSRFTRNYIPLILNHCRSNYELHDPYRVLCSDYNRLYPIICNLDSLPLLKQSILTFLLHN
>HER1_ST_pol#LINE/CR1 2-1384 (fragment) [Scyliorhinus torazame]
EVVWVEVRNRKGAVTLLGVFYRPPNSSRDVEEQIGKQILERCRSHRVVVMGDFNFPNIEWKLFRSNSLDGVVFVQCVQEXFLTQYVDCPTRGGAILDLVLGNEPGQVIDLLVGEHFGDSDHNSVTFTLVMERDRCVQQGKVYNWGKGKYDVVRQELKCISWEHRLSGKDTSEMWNLFKEQVLRVLDMYVPVRQGRDGRVREPWLTREVECLVKRKKETYVRLRKQGSDRALEGYKIARRELKKGIRRAKRGHEQSLAGRIKENPKAFYTYVRNMRMTRARVGPIKDSSGRLCIESEEIGEVLNEYVSSVFTNERGHIVGEDSVKQTGKLEEKLVRKEDVLGILKNLRIDKSPGPDGIYPRILWEARDEIAEPLAMIFSSSLSTGVVPGDWRVANVVPLFKKGNRDNPGNYRPVSLTSVVGKVMERVLKDRISEHLERHCLIRDSQHGFVRGRSCLKSLIEF
>HER_LINE_pol#LINE/CR1 1-1131 fragment [Scyliorhinus torazame]
EFFEEVTKHVDEGKAVDVVYMDFSKAFDKVPHGRLMQKVRRHGIVGNLASWITNWLTDRSQRVVVDGKYSAWIPVTSGVPQGSVLGPLLFVIFINDLDEGVEGWVSKFADDTKIGGVVDSKEGCCRLQRDIDRMQSWAEKWQMEFNPEKCEVVHFGRTNMNAEYRVNGRVLGNVEEQRDLGVYVHTSLKVATQVDRAVKKAYGVLAFINRGIEFKSREVMMQLYKTLVRPHLEYCVQFWSPHFRKDVEALEKVQRRFTRMLPGMESRSYEERLRVLGLFSLERRRMRGDLIEVYKMIRGIDRVDSQRLFPRVEQTITRGHKFKVKGGRYRRDIRGRFFTQRVVGAWNALPVEVVESETLGTFKQLLDRYMDYGKMI
>L3_Mars_gag#LINE/CR1 420-1406  [Metatheria]
MESRGNCAVTCIECAMFVFLPQPSDCYLCSKCRLISLLEEKVKGLEECLSTLQVVRENEVFLKETEARLQWERKGSEVEEGRLDPCQEVGEWKNVTQRRKGRKRTAVXLELKNRFEALPEEEGAGCSEEEXAACPPKNDXVEPQKLSGERSSSKGQRKKRRVVVVGDSLLRGTEAAICRPDNNNREVCCLPGACIQDITENLPRLVKTDDNYPLLVIHVGTNDTARRNLESIAXDYEVLGKKLKTIGAQVVFSSLLPIEGKGXRREKLIWEVNSWLRRWCLRMGFGFLDHGLKYRDDRFLARDGVHLTKAGKNVFAXCLANLIKRALN
>L3_Mars_pol#LINE/CR1 1412-4336   [Metatheria]
MGEGENCLCISXKLDTIESSYNEGRRIAVETPRNSQETKSKKGASSKTHGLKCLYTNAQSLGNKQEELEVLMQGGKFDLIGITETWWDETHDWNMALDGYTLFKRNRIGKRGXGEVALYIKKVYSCEEIQEPEGGSMVESIWVKINGGRNRSDFVIGVYYRPPGQKEEIDEEFGKQITSLAQRHDIVVMGDFNYPDICWSSLSAKSRAANNFLTCLNDNFILQKVEEPTRGNSILDLILTNKEELVAGVEMMGTLGGSDHSXLEFVIEKERKSGHSLTCTLDFGKADFKGFRERIGRIPWTKXLQGKSAQEGWETLKNEILKTQRETIPMRRKNGXCLKRPMWMHRELTNQLRFLKEMYRRWKQGQVTEDEYKSMAWSCKNSVRSAKAQNELRLARKAKDNKKRFFLSYIGRKRRIKEGIGPLLGVDGTMITDNREKAELLNSYFASXFSAKENDLCTGNDRTKMANRELIPKISKEIVREHLAALDEFKSPGPDELHPRVLKELADVIAEPLSVIFERSWKTGEVPQDWRRANVVLIFKKGKRTESANYRPVSLTSIPGKILEWIIKEMVGEHLEREAVITKSQHGFIKNRSCQTNLISFFDRITKLVDEGNAIDIVYLDFSKAFDKVSHAILVEKMERCGLDDNTIRWIRNWLDGQTQRVVVNGSMSTWQEVSSGVPQGSVLGPVLFNIFINDLDKGIDGMLIKFADDTKLEGRIANTLDDRVRIQKDLDRLEHWAESNKMKFNRDKCKVLHLGXKNQLHKYKMGEAWLDSSXSEKDLGVLVDCKLNMSQQCDVAAKKANAILGCIKRGIASRNREVIVPLYSALVRPHLEYCVQFWAPQFKKDIDKLESVQRRATRMVKGLESMSYEDRLKELGMFSLEKRRLRGDMIAVFKYLKGCHVEEGLDLFCLAPEGRTRSNGWKLQRGKFRLDVRKNFLTIRAVQKWNGLPREVVGSPSLEVFKQRLDDHLSGML
>L3_gag#LINE/CR1 105-1097 [Mammalia]
MDTEGTVPVTCRVCAMFVFLPEAXTNYVCYKCKLVSLLEEKVKGLEERLSTLRLIREDEGFLXRMEEIIQEGXQKEKDSEEAEGNQNQRQEVGEWKNVTQRKRRKRRNSAPLELXNRXEALPTEGESGPSEEEAASHAPRNNKEDSQALAGARNPVXAPRKKRRXVVVGDSPLRDTEAAVCRPDVANQEVCCLPGACIRDVTESLPRLIKPADRYPLLLIHVGTNDTVRRNLECISSDFEVLGRKLKDLGAQVVFSSLLPVEGRDFGRERRIWEVNSWLRRWCRRTGFGFLDHGLXYQNDGLLARDGVHLTKTGKNVFXXRLADLIKRTLN
>L3_pol#LINE/CR1 947-4015 [Mammalia]
MVSKNRIWFSGPWLXIPERWAPGXGRSASHEDREERVXXETRRPDQEDFKLKFEGKEKKCPDKTVKPDTMEDXRYDIERRTTVEEVPSNSQEKITGKEARNNTYGLRCLYTNAQSMGNKXSXLEILTQGGKYDLIGITETWWDGTHDWNTAMEGXTLFKRNRSXRRGGRVALYVKKXYTCAEIHEPEGRSVXESIWVRIKGERNRSDIVVGVYYRPPGQMEXMDDAFLIQITKLAQRQDXVVMGDFNYPDICWKSHSAKSRASDKFLTCLADNFISQKVEEATRGTATLDLILTNKEELVGEVEVDRNLGRKCHVILEFIIAKKGKVKSPHMFQTLQGKADFKKFREKRYDSMARDSKRKMAQEGWEALKNEILITITNDPMRKKRGRAFKKPTWPHRVFSDVRFQKDMYQKMKGGYVTKDEXRVSQARKNSVRKAKVQNELRLAKKNAKDDKXKAFQSYVRSRRKKKXTGPLLGTGGVMLTDDREKAELLNSYFASVFSIKENDLQTGKGRTNIVKRELKPKIGEEIVREHLAALNEFKSPGPDELHPRVLKELADVIAEPLSVIFEKSRRTEEVPEDWRRANVXPXFKKGKKMDSXNYRPVSLTSIPGKILERIIKQMVCEHLEKEAVITRSQHGFTKNKSCQTNLISFFDRVTRLVDQGNAVDXVYLDFSKAFDKVSHDILVDKMEKYGLDDSTVRWIRSWLNDYTQKVLINGSMSTWREVSSGVPQGSVLGPVLFNIFINDLDEDIEGMLIKFADDTKLGGIANTXDDRIKIQXDLDRLERWAETNKMKFNRDKCKVLHLGSKNQLHKYRMERIWLSSSSREKDLGVLVDRKLNMSQQCDVAAKKANAILGCINRSIVSRTREVIVPLYSALVRPHLEYCVQFWAPHFKRDIDKLERVQRRATRMVKGLETMSYEERLKELGMFSLEKRRLRGDMIAVFKYLKGCHVEEGLDLFCVAPEGRTRTNGWKLQGGRFRLNIRKNFLTIRAVQKWNGLPREVVSSPSLEVFKQRLDDHLSGML
>LFR1_LP_pol#LINE/CR1 47-1318 via tfasty with CR1-G_pol, 2 frameshifts and 2 stopcodons (fragment) [Lepidosiren paradoxa]
PVISLEEVQASLSKTKNTSSMGPDNIPGSLLVSLKSSFAPQLHRLFNLSLHTGHVPQEWRTATVIPLHKGGRHYxPGNYRPIRLTSLICKAMECIIADLINKDLGGLQTLDPLQFGFMKGRSCLLNLVDFFERVTESLDQDGEVHTTYLDLAKAFDTIPLSGIVERLIQINVKPFITHWIANWLTNRTQKIKIGGANSSICTVTSGIPQGSVLGPLLFGIYFSEVKSNVEGLWLTKFADDxKLGAVVNLMQTMILKQGLNQMNTWCKDHGLKLNAKKCVIVQFGNRSTSTSYQIEGVPLNTEAVVRDLGTYVDEKLSFDQHVATVVRKAFGIAHLIAKGMQSRSREVLIPLYSALIQPIIEYNAPFGMYLSKHLAQLERPQHFITKRISGLEGKQYEECLKSLSLFSVAYRLLRGDLCLTYRAL
>LINE2A_CB_pol#LINE/CR1 27-3776  [Caenorhabditis briggsae]
RAVTPSIPLISIFLAAMVVTIIKHKPRNKRKALSALKDENGGKKSKLSEYSSKEAVDDIIESVDDMSNPLYDLLSNDFKSKEEFTVNDIAMMFKSLAETILKLQSQNTMLKNQNCILNANLSNLTEKVDGLEENLKLLSSQPKESPKPPTTLIKTFASAVASTISAPESQITFMRAASLANSEDARKSNVIIKNIDLSEEAIEKAEIRLQNCQGLRYFDAIGFSHTSSGQRAAHCAPGIQVQGGSKNCPHQIQLNQSFNTGVLECVSPPRPLQTRTREISTILENGDPKEQRGRSNHLYGSQSGSRQSCLQRKSGAVAMGQKTLDPRKFLKIGYTNSCSIKNKVLQLDLWSSNSNIDILCLVETKIDSNYPDSLLSLDEKYAVIRKDRNRHGGGLAILIKKPINYTVVSLPTHLESVEILSVDIKIHGKTTRLIVSYNPNHNYCFKDLRESLNILLSTENPSIITGDFNCAHVDWNSYTASDSQCQSLLDFSLYNGLTQFVQNPTRLEQPNILDLVFTNSMDIIRDVIVGEKFSDHCRIEIDTFILLNSISPLKSTKNFKKGDFRSMNYILSNIDWDLRFSTMSIDEMFDDLRGIILELIESFVPTETHRIHNIIYSKETKQLLKKKLLIWKKAGNSDEYKHVSALFKRSLVKSEEERIYKRLNSGSKNFFGFMKSKFKGNSDIPAIRYKSNENVIMSDEGKAEIFGDCFSEFFNIDKDILPATGNLISKFSSDVIFTPENIELLLYKLKGRNNTSPDSIPSIFLKRACTPLAIPLCIIFTESYRVGRIPKSWKEAIVMPLHKKGSRSDPLNYRPISLTSNICKIMEKLIRKHLVQYLSENNLLSEKQFGFLNQRSTISQLIAYQNKLVFNSLNGLDTHSVYIDFQRAFDTVPINKLIHKLESFGISPKLRNWLHSFVTDRKFQVKINDILSKERRVLSGVPQGSVLGPTLFLLYINCIGDKFQSDYLLFADDLKIYDTNDRLIDADLIELENWCSKWKMKAAPKKCEYIKFNATRKYANSNVMNPKLNQALIPPVENVRDLGIYFSSNLSFHYHYSLIIRKSHQRINMFFSILKNASWSVFIKCYTIYIRPLLEYGTIVTSPILKDHIIKLESVQKSFVFRIFKKFRMAYTSYFEALEECQLSSLEYRRLYNDLVYTYKIIVSKEIIMEVPIFEIFNHAGSLRRHKYYLKSLIKNSTKISSQFLSNRVIRCWNSLAKVCPVKPSSAAFKNRLLSCDLKHFLVLNSTNY
>LINE2A_CE_gag#LINE/CR1 71-883 [Caenorhabditis elegans]
MPPPDDDMIVDSSPTATIPPTCDNILRNQNLPSTPASGQPSIKELIERITILEKTVKEQSKKIAELEATKGFPLITNDASKSKSKLYSAVVQNDPQSVKIIEKAHFAADLRKLGENSIYAIIENVPDCKKEEQTTIDASLMENLAKLDTLPKPEQFFRIKCKKPDVPSRPLKVKFATEYQRDTFIRQFSKALHNLPERPVSSRTIRCRRDMSPEELILLKQRRATAYEENRKAGVIKYYVRDLDICELSTPRPLTAQITPTSAPGLSSST
>LINE2A_CE_pol#LINE/CR1 884-3955 [Caenorhabditis elegans]
EFCHRTYSTKLANSSSSSSPTTSMIEISITRQCPLVAKITPVHSTAKSSNAKSTVSTAAMLYTKKSTTLSNSTQKAATKRQATAPTPANHQSTSSVDSLSKLNCASANIRSIASAERLKYIQDYIREENIDILFLTETFLSPDTPSSLCSTMDLMCIRSDRLQSHPKSRGGGVAIFHKPSLIMSQIDSLQNGYYDRHFCDILAVDHKPSKARFILVYRPPDTSIQQTAALYSNLSELISSPANYHFILGDFNLPNLIWDKLDQLPINIHQDLSDLMSSHNLAQIIKKPTRTAMSGKQNFLDLLFTDSPSLISNVSIDSPIMLSDHSTIRFNLVLNYARTARRLNRRTTILQFRKCNFEALNNHLLIFNWARQFSYFSRCETKLIHFLKIFNELIREFTPAAKLTNTISPNFKKNLRKRVKQRRLRSPPSDQKKYIKARLRSIKKMLAKEENRIVESKNPRQLLSMVKKRTSTPSHVTCLVVKGQLSTNSVAIADEFLNSFAKSFTPPSDPFPALPAQKPIAIDPDFTPINICRIIQKLRPKIGFSQDNINFFVIKKCVHSLSVPLSLIFSESYASGQFPEIWKSSIIVPVHKKGCRTDANNYRPISLTHPLSRVFEKFIVEKLRKECSSKISKSQFGFMNSRSCTLALLNACSKILDSLTIRSKYVDAIYLDFKKAFDSVPHNLLLCKLELFGLDVKMCNWFRSFLSNRTSSIKVCDHVSKNKLEVLSGVPQGSVCGPFLFLIYINDLLGMLPPDVQISAFADDIKIYGDNSNSIQKSIDIVTDWCRKWSLNLAENKSVVVHYGKNNPKFVYTANGIIIAKKKSVKDLGIFVDDKLNFHGHITYVTNAALLKCRQLLKAFRSTNASLYFKLYNIYVQPILDYGCEIYSPTSGALIKQLEKPLRFFTRLVFQRCNIKYSSYEDRLAQANLKSVQHRRVLQILRTYHNIITGNFHYPNVSSSVKKAVTPRYPYMLRSVGETNKGFLRVNLATWNRLAKQIPEKLNRSMFASRLNSFPLNILIPPT
>LINE2B_CB_pol#LINE/CR1 3-2399 fragment  [Caenorhabditis briggsae]
SLIAHLDKFLPLDSSILXXDFIFPSLSWNPLNHNHQFXSFLTSRGLHQHVCFPTRVSDTSAKILDLVISSDDLPLSNVAVEPPLLNSDHFAVKFHILPTTLTPLSPSISRPRLWFKKCNLRSLNSDLATIDWDLSFSXLPSPSEKFTKFIDILSTLIRNHTPLLPPPKSKPFSLPFRKLKRARHLYSKLLKTPTTAPRKILHVRTRIKSLTRTINKKMVSDEFRILSAPHCRAARALIKSRIRSSPKVPPLSANGCLITSEHEKSTLFTKTFSSNYNHLTSSASITPAISHQHLPFSGSDLEIFDPWIIEKLLRKLPPRCGYSPHSANYFIIKKCATTLALPLSIIFSDSLSTSHVPDSWKHAVVVPIPKKGSPSSPENYRPISLTDPFARIFERLVCDRIKWEFLHQFSSLQHGFLSNRSCTTSLVQSFSNYKATLLKYNTLDVVFFDFRKAFDQVHHQLLIQKLASFGVPKSYVAWFSSFLSGRTFSVKIYDFIGPPSSVIPSGVPQGSVSGPLLFLIFINDLLLELEQIPSLHLAAFADDIKLYSHDPIALQTGINMVVNWATANHLPLAHSKTALLRLGSHNSSHPLNIAGVTLTPSSSVRDLGLITDSSLKFSAHINKITSLALLRSKQLLKSFRSKSPEFYIHLFKCYVLPILEYCSVVYSPPPSSRLALKLESPLRFFSKCIFQRCNIQYSSYSDRLSILNMFSIRHRRLKAQLILLYKFLNGSAYFPNLNAHVKYSSSPRRPMNLIIVQPYSSDYFSXIVPLWNAITSQVTRFLLPSEFESLISSSITRY
>LINE2B_CE_pol#LINE/CR1 12-3040 via tfasty with LINE2A_CE_pol, 1 frameshift and 2 stopcodons. [Caenorhabditis elegans]
CFSTYCSLDNSSSSSSYLSPPSNPIPQTSDYTSLTVDTHISERLSSSQQFSSPPGSFIPSLDNLTLKPMSLANVRGVAVLPKIIMLKEFFTSSDLDILFLTETFLNNTVPSGLFASPLFCFRKSRPxSRTSFxGGGVAIMYKNSLKISIRNINFETHYPKHRCEILAFDILNTHSPAPPLTVFLVYRPPCCSVAENASLIAHLEDYLPLSRTLLTGDFNFPQINWSSPNASSHPFASFLCSSDLSQRVRFPTRVSCTSSNILDLVACSSDISVLDLAPQPALLNSDHLSVEFKIPLPYPTVIPSCSSSQDSRNVLLYDYKKCDFPSLNRDLACINWQFEFSFLNSVSDKFEHLLSILENLLTQYCPTKSMIPTSSIPPSSNSLWKLKRLRQKISKLVLSRNCPPETIIIAQAKYRKLYRNYKNSLRRSENGIVSSSNYAKIRRLINSRLKTLDLVPAIISDNKTIVSDSDKSEIFAKMFASHYSPENTQLPDPLLNSPRNSDSTNSNSTTNSIRNDSFQPYIIESVLSKLPPKCGFSPHCANYLVLKKCATPLALPLSLIFHQSFAESTIPARWKQAIIIPILKKGNPSSPHNYRPISLTDPFVRVMERIICSRIRTDFSHLLSPHQHGFLQLRSCPSSLVRSITLYHSIIRQEKSLDIIFFDFAKAFDKVSHSILLKKLASFGLDPLTCSWFKEFLNQRTFSVKINKFLSKNTYPISSGVPQGSVSGPLLFILFINDLLIDLEHSINVSCFADDIKIYHHNPLIIQQSIDTIVSWSKKNELPLAPAKSASLSLGSLNTNHSYSVDGVPIIPSSTVRDLGLVTDPKLKFEAHIAKVSSLAMLRAKQLLKAFSSNSPHFYGFLFKTYVAPIINYCAEVYSPSPNSLLSTKLEKPLRHFTKRVLQRCNTKFSSYEDRLSIMKLFSTRHTRIKAQMKLLYRFLTGSSHFPSLNQFVSFASSNRHPMILVRKDSCTAHFFAQSVPIWNNLFKNVPVFLSPFQFSHFLDLHIPRY
>LINE2C1_CE_pol#LINE/CR1 180-3083 [Caenorhabditis elegans]
MLHLILVSAHWWLCLPLCLIPSPSSPFLLLITLEIRPLPPPTCQKNAPFLNCHLANTRSVACAERLVALHEYVRANKIDILCITESNLSTQIPLALCSSHDILCLRCDRGPPHPKSRGGGVAVFYSKSITLIQADSLLDQFYPLHSCEIVTFDHKLSKSRFIIVYRPPLTSVTETNYLFENISLLLTSQAKNHYILGDFNIPSARWSRDIPVPPGIPQALEDLIISHNLTQMVNFSTRVAFSGIGNFLDLIFSDNPNTFLSCSPSLPLICSDHSTVSFTLAIDCNSKPLPPPKTKSLDFRKCDFLSLNQHLMSYNWPRQLSYFSNTDSKLAHFSRIFNELIVLYTPIAKPPRPKSTCHKSIYRLARRACSNTISVRRKMRKELKSIKRKFAHEEDRAIHSTDPRSVFQLVKKRISPRPQPINLDINNETVSDPVRIADEFIHNFALSFTAPCPPFPALPAPKPSKLSPDFSPFNIHRHIKALKAKIGFSTDNINFFIIKKCSDSLTVPLSIIFSESFSSSFFPTPWKTSIIVPLHKKGSTTNPGNYRPITLTHPLSRLFERVVLDALKQKLSPLLSSKQFGFLPARSCTLAVLESTSKIQKVLLDKSKYVDTIYFDFKKAFDSVPHNLLLLKLLNVGLDSGCCEWISSFLSNRSSKIKIDHFISDNSFNVMSGVPQGSVTGPFLFLLYINDLLDLFPPDVHVTAFADDLKLLGSDPTSIQTSINIVADWCKKWRLNLAEHKTAVLHFGKQNPRHKYFVNSVEIKPRDSIRDLGIIVDTKLSFVNHINQTSNSALLKCRQILRSFRSTSPEFYFKLFNVYIRPVLEYGCELFPPNSTKLAKKLESPLRFFSKCVFQRCNLSYSSYSSRLSQFNLLSTHHRRVLQILRTFHKIISSEYHFPSLSSFVRASRSTRHPYLLVVCGVPSKCFLHVNLSLWNRIAKRFPKLLTPNAFASRLGSIPFDTLFPPT
>LINE2C_CB_pol#LINE/CR1 100-3117  [Caenorhabditis briggsae]
EIXHRTRSDIYHHDTTCMSQRLFKSINVHSNVIVCPTVAPRPVSDISPCHIAAPVLSPFPLKPLPKTNPLPASAVKSAVINLSCKLSNVRSIASAERLQVLHSDMLDNQIDLHFVTESFLSPSVPDSLSSSSTLHCLRFDRRSPNPKGKGGGVAVFARKDIQLVEADSLSSQFYPLHHCEIITVDLLQISCRFVLVYRPPSTSPAQSDVLFHNLSLLLSNSYRFNFLLGDFNYPQINWSSDNLLPNDLPAGLESLMSLSDLTQIVDFPTRTSHCGAENFLDLVFCNKPQHISKTVNLPPFLLSDHSSVLFETILPSISPPSPILNTTSSKRLDYIKCDVKRLLDHLCSYNWPRQLSFFSTVDSKLAHFSAIFNELVVLYTPTVRARRPTFSHRKPKVFRFIQRRNPSLPRPQLKLLVRRQLNRVKRARAREELSIINNKNPKELFHFVKSRLRPPHCPISLLVNGTLSSDASELANEFSSVFQEAFSPPSPPFSALPAIAPFAVCPDFSPLNIAKHIGSLPSKVGFSPDFINFLVIKKCSDAITIPLSLIFQESFSSAKFPEIWKHSVVSPIFKKGSKYDANNYRPITLTHALSRLFERLVLEELKRVIGPSISPNQYGFVSKRSCVLAVLESTSRIQKTLANKQQFVDVIYFDFRKAFDTVPHNLLLLKMRRIGIDERCCVWFESFLSNRSSNVKVNGLMSTSEIVVKSGVPQGSVTGPFLFLIYINDLLGLFPPNVHVTAFADDLKITGSDPLDMQRSIEIVEHWCDIWRLKLAENKTAVMHYGKRNPKTVYFIKGSPITPHRSFKDLGILVDDQLQFDKHINLIAYSAKLKSRQILKTFQSKNPCLYFRLFDTYIRPVLEYGCELFDPSNATLANKLESPLRYFTRKVFQRCNMPFNSYTDRLSQFSMLTTLHRRTLLVLRTYHKIVINSYHFPSMSSYILPSHSNRAPYLFKINGQYFDCFLHRNLSMWNRVCKVINSKLSPVAFAKRVGAIPYDILIPPT
>LINE2C_CE_pol#LINE/CR1 168-3185 [Caenorhabditis elegans]
GFLCSSTYCSLNSHPFSRSTTQTNSPILNCSYSSSSSPLSTSLPVCSTDKIVLHTLKFSLANVRGVSVLPKIIMLKEFFSSSDIDILLLTETFLNSSVPTSLFSTANISFIRLDRNTELHSKVSGGGIVIMHKSSINVSLRDINLEKHYPKHRCEILAVDILSSDPSHPPLTIVLIYRPPCCSAAENIALCTHLEAYIPLSNIILTGDLNFALIEWSNNTTSTHPFSLFLSSNNLSQKVRFPTRISRTSSNILDLVTCSPDVSVLDLSPRPAVLNSDHLSVEFKIPLHPSYHKPIIGVSSQPATPTKIFDYKKCNFPLLNSDLSRVNWDWEFSAFKTVSEKYEHLLTILENLLTLHCPTKSPNLGTSSAPASNLLRKLKRPRKKTNKLLLSRNSPFETIKNAQVKYRKLYRQYRKSVRCFENDIINNSNFSKVRRLINSRLKIQEKVPAILVDNKPIVNDSDISEVFAKIFASQFSPEGNLSPNSPPPPPHNQPNSPPAPNKSPNNCTQADSFLPYIIESVLSKLPPKCGFSPHAANYLVIKKCATPLALPLSIIFRQSFSDSAIPNRWKHAVIIPIPKKGNPSSPSNYRPISLTDPFARIMERIICSRIRSEYSHLLSPHQHGFLNFRSCPSSLVRSISLYHSILKNEKSLDILFFDFAKAFDKVSHPILLKKLALFGLDKLTCSWFKEFLHLRTFSVKINKFVSSNAYPISSGVPQGSVSGPLLFILFINDLLIDLEPNIHVSCFADDIKIFHHNPSTLQNSIDTIVKWSKKNKLPLAPAKSSVLSLGSRNSNHTYRVDNVPILPSSTVRDLGLITDFKLNFEPHIIKISCLAMLRAKQILKAFSSNSHKFYSHLFKTYVAPIINYCSEIYSPSPNSSLSAILEKPLRTFTKRVLQRCNVKFTSYENRLCIMELFSTRHTRIKAQMKLLYRLLTGSTHFSKLTQFVKFSNSNRRPMILVRKDTCTSHFFAKSIPIWNNLVKNIPVFLSPYQFSNFLDLNIPRY
>LINE2D_CE_pol#LINE/CR1 3-2472 (fragment; 1 frameshift) [Caenorhabditis elegans]
PPCCSVSENAALIAHLESYIPLSRTILAGDLNFPQINWSSANSSLHPFASFLSSSNLSQKVHFPTRISASSSNILDLVACSADISILHLSPQPALLNSDHLSVEFKIPILSPIDSPCPTSQDSNSSPLFDYKKCNFPLLNRDLARVNWDFEFCSQKSVSDKFDRLLSILNNLLTQHCPTKSISVSKSPSPYHNIHRKLKRLRNKISKLILSRKCTFEIIKTAQSKYRKLYRNYRKYVRRFENDIIANSNFTKIRRLINSRLKSQNLVPAIILDNKSIVNDSEKSEIFAKIFASHYSDDSSQSQNSLHSPSPTSHSSLQNQTSTSLHVDSFQPYMIESVLSKLPPKCGFSPHCANYLVLKKCATPLAFPLSIIYKQSFADSKIPDCWKKAIIIPIPKKGNPSSPSNYRPISLTDPFVRVMERIICSRIRADFGHLLSPHQHGFLHYRSCPSSLVRSVSLYHSLLKKEKSLDIIFFDFAKAFDKVSHSILLGKLAKFGLDSLTCSWYKEFLENRTFSVKINKFVSKNSYPISSGVPQGSVSGPLLFILFINDLLIDLAPTINISCFADDVKIFHTDPTIIQNSIDIIVSWSKLNELPLAPTKSALLALGTRNKNQSYSVDGVPIPPSSTVRDLGLITDCKLKFDPHIAKVSCLAMLRAKQILKAFSSNTPKFYAHLFKTYVAPILNYCSEIYAPPPxNSLLSAKLEQPLRHFTKRVLQRCNTKFSCYENRLSIMELHSTRHDRIKAQLKLLYRLLTGTSHFSNLNQFVTFSSSNRHPMILVRKDKCSTHFFALIIPVWNNLFKNVTVFMSPYQFCEFIDLNIPRL
>LINE2E_CE_gag#LINE/CR1 53-877 [Caenorhabditis elegans]
MPPPDDNSANITDDSPANRTSIKCDPPKKVHGLPSTPTSSQPSIKDILERLTYLENLVAEQAKTIEELKAAQNSPLPAISQSNKNICPLYSDIVKSDPQFGQVTALTHLSSDLRKLNSKSEYTIIENVTDDKAKGKSPNDMEFMKKLSSIEDLPKPTEFYRLKCKNPDITSRPLKLKFSSEAQRDSFIRGFSTALHSMPDRPITPRPIRCRRDMTPEELLMLKKMRSTAYNENLKAGEIRYYVQDLKVAQLSKPRPLPTQKETPVPTPVLMDSA
>LINE2E_CE_pol#LINE/CR1 878-3810 via tfasty with LINE2A_CE_pol, 1 frameshift and 1 stopcodon. gi|3319427|gb|AAC64624.1 partially overlaps  [Caenorhabditis elegans]
ELGHRTANHHLNHSNSSTLSCPVVASNIFTNFTNLSQVHAATKDLSISNTGARQTCNYPEVFPVGCVLANVRSVSTVERLSFIHSHIRSMNIDALFVTETFLTPSTLCCATDILCHRSDRSDAHPKSKGGGVAMFHRSSLLFSKCDALIEKYYDQHHCDILAIDHNPSKTRFIIVYRPPDTSLSQTAALYHNLSELLNSSNRRNYILGDFNLPNVKWTDLARLPCNIHRDLAAFMISNNLYQVVNKPTRVALSGMENILDLIFTDSPSLISSLKSESPLLLSDHLSIKFDLVLSQPKVAPSLKKHRALLFRKCDFRSLNAHLQSFNWPRQLSYFSNCETKLIHFLKIFNELVREYTPIAVERAKISTKYRRNLHRRMKQRRSRNVHIDTKRIIKARLLAVxKRLAKQETRIVESKNSNQLFNLVKKRIKHSNAITCLEVNGRTTMDPSEITDEFIKTFSESFTLPSEPFSALPAKKPSSITPDFSPVNIHRIIQKLRPKIGYSRDDINFYVIKNCVHALTIPLSHIFSESFDSGHFPEIWKQSVVIPIHKKGKLCDANNFRPISLTHPLSRLFEKIVMDKLRSLTSDKLSRFQFGFMNRRSCTIALLNSCSKAYELLSRRSTYVDLVYFDFKKAFDCVPYNLLLCKLQLFGLDMKLCNWFQSFLCGRKSVIKVDDYVSDNSFDVISGVPQGSVSGPYLFLIYLNDLLEMFPSDVYVTAFADDIKILGDNSTAIQRAIDIVTEWCTKWKLNLAENKTNVVHLGNKNPKTKYFANGIQISEKDSVKDLGVFVDNKLNFKKHINYISNCALLECKQLLKSFRSTNANLYFKLFNVYVQPLLNYGSEVFSPTAKSLIKQLEMPLKFYSRRVFQRCNMQYTSYEDRLAQMNQKSVQHLRILQILRTFHNIVSGEYHFPNVSSLKKARSPRFPLMMKSVRPADKSFLLANLEIWNRVAQLIPEKTSRQMFASRLNFIPLHFLLP
>LINE2F_CE_pol#LINE/CR1 1-750 fragment [Caenorhabditis elegans]
DHVVLQKGIDTVVEWSISNSLPLAHAKTALLRLGSKNPVHPYLIQNKLIHETSTVRDLGLITDSSLNFKAHINRTVALALLRSKQLLKSFKSSSPSFYAYLFNSYVLPIIEYCSVVYSPSPNSKLSAHLEKPLRSFSRQVLQRCNISFTSYENRLLILNIYSIRHRRLKAKLLLLYKFISGTSYFPNLNDLIRITESKRRPMIIICTKPKITDFFTSTVPVWNAIFHNTPHFLSPREFVKVIDSSITRF
>LINE2G_CE_pol#LINE/CR1 1-2582 Overlaps old Sam_pol gi|17544010|ref|NP_500227.1| (1 frameshift; fragment) [Caenorhabditis elegans]
VTGLSNQYSVFRTDRAKGKRGGGVCNVVKVEIPCETVVSxLKTLNAYEILVNDLNIDVVPFRIINIYRAPSCTYQNTVRLISKIEDLVEHQGKVVVVGDLNIGGIDWGLNDSKTKLGSLLVDLCKNYNLEQYVKMPTRKSKILDVALSNSVISNLNIMAPIGSSDHNTIKFTVQLLQNISVPKKMIPDFSKLDWPCCATYFENIEWGKVFDTHSHVNDIYECFLGHIRTMFSQAVPTMPMPETSKPVPQYLRSFEQMVKNQFSKTIMSKTMNDFIEYIYLARKYRKKLRKYLSNLEVKLFKKKGNSKFSKHAKTLLKPRNCSVPALIDNDENEIVSELDKANLLASYFEAQYTNQNNTNFALDDDFVSDQPIPWVTDAEVLKVIMASKKSCSVTSDQVPFTFIKILSPLISSVLAQIFNLSMMRGQVPHAWTESIVIPLDKITNANNPTDFRPISLTSHLCRVYERCILAKIELFLIDNKFWSQNQHGFRPKKSTVTNMLESLNDWSKSIDLGEQIDIIYLDFSKAFDRLPHDLLLDKLVSLRMNKNLLIWLNEFLSNRSFRVRIGQTLSSRKLATCGVPQGAVLSPLLFGIYVNDISSILPEKVACKQFADDTKLYVSTPKTESENNLQSALDAVVDWTRGSKLTLNQSETVHVTVGKRRTDFKYHLDGYPIERKAITRDLGFLISEKLDFSEHWRKCINLAKFQLANMFNQYSTSNKKLMILLYKTFIRPRLEYGTVVSSPTKKSDEKAIESVQNAFTRRLYSRIKKRYINPTDKDYKTAMERNELFDLQTLSTRRKIIDRIQVIRMNNGKVDLKTSEFFEQQETHTRSKKKYIWSTGKSKLRRHFFVNRTLATMKQH
>PSLINE_gag#LINE/CR1 495-1499 [Platemys spixii]
MESERSAVVTCTGCAMFVFLPQDRXDFICTKCRLVSILEEKVKGLETQXSTLRCIKENEVFLDRXHDLLLQAQCEEDSEKAXQGXLXNGEXNWQHVTSRXKRTHXPTVQIEVRNRFQALCTGXTAENDLQDSSEGMDQKEXLLIRRXGMHCPRDGGSTTTTPKRKRRVXVVGDSLLRGTESSICRPDRETXEVCCLPGARIQDVTEXLPRLIKPSDCXPFLLLHVGTNDTAKNDLERXTADYVALGRRIKEFEAQVVFSSILPVEGKGPGRDRRIVEVNAWLRRWCRREGFGFFDHGMLFQEEGLLGRDGIHLTKRGKSIFADRLANLVRRALN
>PSLINE_pol#LINE/CR1 1475-4396 [Platemys spixii]
PSEEGFKLGSMGDGDLSPXVSGEVGHXXEAEGGGCNRGGLLIRTEKVGQSASYLXCLYTNARSLGNKQEELEVLAQSRNYDMIXXTETWWNNSHDWNTVMDGYKLFRKDRQGRKGGGVALYVREHYDXSELQCETGDTPVESLWVKLRSKNNKGDVVVGVCYRXPDQEDEVDEAFFSQLGKVSSSQDLILMGDFNHPDICWKSNTAEHKQSRKFLXXVADNFLVQVLEQPTRGRAXLDLLLTNREDLVGEVEVGXNLGSSDHEMVEFRILTKGRKENSRIRTMDFRKADFDSLRELMGRIPWEANMRGKGIQGXWLYFKETLLRAQEQTIPMCRKNSKYGRRPAWLNXEXFGELKHKKEAYKKWKLGQMTREXYKNTARTCRXEIRKAKAQLELQLARDVKGNKKGFYRYVSNKXKXRESVGPLQNGGGNLVTXDVEKAEVLNAFFASVFTDKVSSQTTALGGTXWGGGEXPSVLKEQVQDYLERLDXHKSMGXDAXHPRVLRELADVIXEPLAIIFEXSWRLGEVPDDWKKANIVPIFKKGKKEDPGNYRPVSLTSXPGKIMEQVLKESILRHLEERKVIRXSQHGFTKGKSCLTNLIAFYEEVTGSVDVGKAVDVIYLDFSKAFDTVSHSILISKLKKYGLDEWTIKWIENWLXHRAQRVVINGSMSSWQPVTSGVPQGSVLGPVLFNIFINDLEDGVDCTLSKFADDTKLGGVVDTLEGRDRIQKDLNKLEDWAKRNLMRFNKDKCRVLHLGWKNPMHSYRLGTDELGSSSAEKDLGVTVDKKLDMSQQCALVAKKANGILGCISKSIASRSREVIIXLYSALVRPHLEYCVQFWAPHYKKDVXKLERVQRRATKMIRGLEHKTYEERLKELGLFSLQKRRMRGDLIAAFNYLKGGSREDGARLFSVVADDRTRSNGLKLQWGRSRLDIRKKFFTRRVVKHWNGLPREVVASPSLEVFKLRLDKTLAGMI
>Perere-2_gag#LINE/CR1 367-1491 [Schistosoma mansoni]
MTGRCNKSICHRPGCRYPVDSGMQCDECKGWYHDVCTNLTPAAFKRFSKNGCVWLCQQCCLDANSLLTEAISIVNAAKKCLGKRGRDTSVRTQSVDTQIDTRQAQVSPKTADPHPTKEEEHPPKRTVTTRNSRKKVSSVPRIKNGTQKGTSGTQNRKARSVSSVKDDPTSQVVLNLPESHSTPDATVVTTPKNVGDWVRVVRKKRQNDVKGNPTPTKRVEKPRSDHSDRSVIFHRVKESDSSEPKARFEHDIVLIKQLLNQVMPKNIPGVTLLKVYRLGNLAHLKPNQSRLLKVVFKSPNERDLILENGHKLKGSGVFLRKDLPLADRVKRREAEKELQLRLDAGEKDLKIVNFRVVRLRQRMMPKPLWVKHEAT
>Perere-2_pol#LINE/CR1 1929-4289 [Schistosoma mansoni]
MVDWGNLRTESSANSFEQELVDAVITCALVQHVKEATRYDPGSASSLLDLILTHYEDDVANLDYMPPLGKSDHAVLSFDFHITVDHEYASAQSRPNVWKADIPDIMKSASSVDWKIDPESSIETAWDLFRNLYLKVTAPHIPWTTPKRPRNSPPWFSREVRILLRKRRKMWDRFRLLGTDEAKSQYQKARNTCASTLRKARKLYEEKIVRESIECPKRLYSYINQRTKRRRNVPSLWGDSTATSLVEDDFGKAQVFSKYFSDVYTIETPFSPVHENPPTQALDSVTIKELDVFGLLIKLDIGKSTGPDELHPKLLKELANFVVNPLSVCFNLSVTQGRLPKDWKNAIVSPVFKTGTKHKPENYRPISLTSVVVKILEKIIRKELLKYLDENRILSKKQNSFRTGYSCLTNLLVARESWCALKDQKLPIDVVYIDFSKAFDKVPHNRLLYKLRNVGIGGNLLMWIKDFLVGRQQRVRVNSKLSSWETVLSGVPQGTVLGPVLFLLYVNDLPRLLSSSVLLYADDVKIWRAIQSKGDSLELQNDLERLSEWSQTWQLPINTSKCIVMHIGHQGTDTYTMNNTELPIVQAHNDLGVIVSQDLKTTAHCRAIDAKGFRTLWSIRRAFRHLDAKTFLTLYTVFVRPKLEYCIQAASPCLKKDSELLERVQRTATRLIPGIAKLPYGTRLTKLNLLPLSYRRIRGDLITVFKLLNDKFAPDMPSFFLSSKTENLRGHSKKVHKPRRNYLSADYRLSHRIINEWNSLPQHVVEAPSVDSFKRKLDQLRDHHCQD
>Perere-4_gag#LINE/CR1 22-1674 [Schistosoma mansoni]
MPTVRLVDIKSEMPTCIKSTQSTRPHALLRPRSNIPKTKESNSVSHVYENADRYSTDIRQLQNSLAEIYSRLNQLAPLTHIWGINTDKNLEQLTKAECILDFVAEEVTKRMMSSHNAVVYNLPDRIHPNKLRDICLKACDMLKVNCQVIRLRKKSDRLTCPLLFKFGCCNDAKQFIDLSKNISSLVPYKSIKVTPDLTPCQRRIRRREAIESYDRVIVKNQLKTVCNEMIDIKRMDNKHDVIPQTTGPSVDLDESADLKSLNKIRSPSVTKRRDGISDPGCSLSIIPKCGPCNETHPTKHIHVKIGSPRDTPQEDSKEPKFISQRQRNPSSLTKKTGEIKSKIRNRGTRKIEANCSVGIPTTVNRFYPLISCNLPSTPRTMGSTLERNKPFYTHTHKNYQNTGHSTHLLKSKTVNNNSNYRFLTPHPMYIPQDHNCNYSQNENFPVSTHHMKTASIHNNSRNHFQLRASDPPHARTSANSYNRGYELNHQNCLANNSTLYSQHVPDFFGIRPLVAPLLKHIALVISNQVRNINSLPPYSSHQKVLLPFPPG
>Perere-4_pol#LINE/CR1 1860-4352 [Schistosoma mansoni]
MCLINARSICNKKTDLALFASIYQPSLIMISEAWTNSNISDLSISLDNYLLYRSDRLKGRGGGCLIYAHSSLNSLLCDMPELNKLKDSVWIVLKPSNSITLLFGCIYQQPNLAIGKIAVLSEVFTLASSLPFTGKLICGDFNMPEISWFPVKAPKRYESFIECLELGQWTQYVSSPTRHQNILDLVFTSGLTPNTVYIGKTFPGSDHNTVVCSLNIKNTNGRRKNVTLRRNYRKVDWNNFHNYLRSTDWGTYFTANNTDTLTNIFYHNIESIMNKIAPLEYWRPKFSKDLFIPAGTRRRLQRHCTRFHNSNDFSSLVTMTEILVQTDAISTQKAIEQEKRAVELSNNSSALTTLFQNKLKRSKSRGNIFIKDKQVYEDPKLVTGLFNEHFCSSLTDEKPLNDSELITASACEITNVDFNVQNISKAISTLKHSYTDGPDGIPASMLKRGGVDMCVLLLKLFAISLSTAHYPTAWKTTHIIPKIKTGPEANVENYRPINITSVVSRVMEKVVKAALVQHLITNNLISVSQHGFLRSRSCDTCLVDYMNNITLKRDNGLLVSVIFLDFKKAFDKVPHERLLAKLRSFGINNPLYSWFVSFLKGRKQMVNYNDCLSLPRPITSGVIQGSVLGPLLFLMYINDICNIIKSGKPYLYADDLKIVYSYKPEVLSESVRLIQDDLNNLTIWSEKWQLPFNLHKCGIMHFGKHPYEPQLYLNKSKVQTLNSVHDLGINYTGSLNFKAHASFIISKARRLIGFITKNFFTTDAKLTLYKICVRPSLEYCSFIFSNMNTTDKIRVEDVQRRFTRQLLGSDTTLDYTSRCMHLSLEPLWHRR
>Perere-5_gag#LINE/CR1 377-1615 [Schistosoma mansoni]
MVGSVHKCGQPYCLFPVEEGMQCDECKKWFHKMCTRLSPAAYKRCSKPNSHWLCMFCCSSKTLLIQEAISLLALAKKVDIGRAGNMDTDNEDCISVVNAAMAGTRHPISQHEAKICTPIQPMKATPLSTEGPVALAATEDPARTTIVQNSSNLDAENSGKWITRKRKRDGKTSKESARMVGKSSLDSRPEHQATPLKSKCKEIINTVVDGNSLTSPNVVGSNSLDPHDTVIKKANSKKPVANRQDLTSRSKAVNTTFKAVKQVPSVIIWNLAESKDTDPAKRHAHDLQLVGSLIRNILPKEVPGVHISKVIRLGKYVGGETQQRRILKLVLGNFEERDVLLNNARKTRDSNIRIRPDWPLEDRTKWKNALTELKTRRLNGEANLTIKGFRVVRSWKPILPRPVWVERMSPKTP
>Perere-5_pol#LINE/CR1 1657-4386 [Schistosoma mansoni]
MSELSLMVDDLNPDIIVITETWLTVDIDCSPVISGYICVRSDRVRSRKGGGIILYIRDHFRINLIISEAHVSGTCEVVCCTIRSRNGLVTIGGIYRSPCCLADDFILKHVCSWSKAECCLIVGDFNAPHINWIELTAPGGGFDSVLLSSIIQCALVQCIVKPTHIDLEHNPSLIDLVLTHHCEDIADIQHLPPLVNSDHVVLSFKFRIHGIEFASAPPRPNIWRANIPAIRDYAISIDWSVDADGSIDDARNRFKSTFESVTQPFIPWSARKLSYCPPWINKETRKLLKRRKHFWDLFLSTGQASFKCEYKNRNVCKKTIAKSRTAYERQLAYDSRNCPKRLFSYVKRRTKRSDGIPSLLLSENSALLTESDLAKAETFANYFSEVYSTCSVTTTCPVDNEIPAIGPLHVTEDIVLPLITNLKPCKIPGPDGLHPRLLSSLADIISRPLTMLFNMSLSQAQLPRDWKDAIVSPIFKDGQRRIVSNYRPVSLTSIVVKLLEKLIRAKLLSHIDSYNLLTPEQHGFRNKHSCLTNLLIAREDWIAALDNGQSVDVIFIDFSKAFDKVSHLGLMQKLSSFGITGAIQEWIGSFLCDRRQGVRVNGTLSEWKPVKSGVSRGTILGPLRFLLYINELPLLLRSSTLLFADDVKIWRTIRNETDRCYLQADLDELVRWAHDWGLEVNSRKSVFMHIGHDISYHYTINGTSLPRVHEHKDLGVIISHDLKTTTHCNAVASKGYRALWSLRRAFKCFDEDMFRILYPTYVRPHLEYCIQAASPCLIKDTKSLERVQRVGTKLVKGLSKLPYDERLKRLNLFPLSYRRTRGDLILAFRIFNYDLGVNMSYLFAPSSTNNLRGHSKKVLKPRSNKLKVGSRFSHRVVNDWNALPEQVVSAPSVNIFKKKLDLHWKEICQD
>Perere-6_gag#LINE/CR1 258-1355 [Schistosoma mansoni]
MVGSSFKCGQPNCLFPVDEGMQCDECKKWYHKMCTRLSPAAYKRCSKPNSHWLCMFCCTNKTTLIQEAMSLLALACKKKDSGCANNASTDSEDCVSVVSAVTKRAEQPTLINDEVKLPLQPTRSKSPHGIDMSNHVSLVEIEDPDKTVTVPNSPNAAVLNDQKWTAVKRKRKGKKANDKAHLVDKPLRNSQSESLNALSHSDRTADHHPSATERNLISSNIIVSKLPESNDPDPKVRHTHDLERLGEYIRSILPDNTKGVQVKKLVRIGKRADDSVLPRPCRLLKVILGSEKQRNLLLSNARSHDNSDIRMRPDVSLEDRIKRKTALAELETRRQNGEENLRLVGFRIVRSWKRMLPRPVWIGRSP
>Perere-6_pol#LINE/CR1 1799-4144 [Schistosoma mansoni]
MTTKCSINSFDSRLLETVMEHALVQHVSKPTRFGVNQGSSLLDLVITHETEDIANLNILPPLVNSDHAVLSFTFRASDMIYDQIKPRPNIWRANIPEIQDCATKIDWSVDTSSSVDEAWSVFKGKFRSVTSRFIPYLVPRRPNNSPPWINKEVKNLLRCRKKHWNMFISTGLEQYRSSYRKIRNNYKALISRTRRSYEKQLVRDCKHSPKRLFSYIKRRTQRSDGIPSLLIQENPLSLARNDTEKAEAFSEYFSKVFSSNNEERSPIHGDCGDLLMDPVVIKKETVLSLLQHLKPDKSSGPDDIHPRIMKALSDVIAEPLPMLFDMSLRQSRLPRDWKDAIISPVYKTGGRDLVSNYRPVSLTSAVVKLMEKIIRMAVINYVERHDLLSKEQHGFRKGLSCLTNLLIAREDWAEAKDRNIPVDVIFIDLSKAFDKVSHSGLKLKLESFGIHYAVIDWISDFLHERRQRVRVNGALSSWEPVKSGVPQGTILGPLLFLLYINELPAIAKSSVLLFADDIKIWRPIYSMSDRIVLQEDLNSLVAWMNGWSLEVNPNKSVVMQLNNYDDSYHYTLCGLVLPKVRNYKDLGVILSNDLKTTSHCKAAAAKGYRALWSIRRSFRYLDGEMFRLLYPTFVRPHLEYGIQAASPCFKYEADMLERVQRRGTKMVKGLSSLSYEDRLRHLNLFPLSYRRIRGDLILAYRILNDDLGTNMSYLFLPSRAEHLRGHSKKVQKPRSNRLRLEFRFSHRVVNYWNSLPEHVISAPSVDIFKTRLDLHSVTNCKD
>Perere-7_gag#LINE/CR1 27-1076 [Schistosoma mansoni]
RLPQSWCVARRLRKAQIKTSCPILFQFGSIIEANHLLKGQSLLRRIPTIKKVRITHDKTAIQRRNSSEVQNNQPSLRGSGSYNVGHSAIPKTPYPTPLKNGGTPHTATSPKNKTKHQAAVTIHPKPKHSTTTKCPPTYASTVSKHSSCVSNVKPKPKPHINRSNSYNRPNTVMRNNTKFSLNTHKYSRSLNTQHAPTHSSRMHYNKHNELAVPPYPNVRLRPTKTTLTHDANKPYSLKHAGYRNQHSPHNRNTTPGNNARQSCNNYLKHTTPLTTRNRSRTPHCTQGNHNVDLLGDPPIDSKYYQNQTTLYNSLISPNLAHTPPHPFLSLSPSTVLLWGLQMLRATIPLF
>Perere-7_pol#LINE/CR1 1037-4240 [Schistosoma mansoni]
MGSPNVEGDNSTILRPLSIYSDLMGSDTSFSPSITVSSLKSSLAEHDHPPNTPPIHLTHPILPNTREHTSFAKLTSDHLSPVNYAGIKLNKQERRANTPTFSSSHSKSDKPQGLQHTILLDKHSSFLTLMLINARSIQNKMTQLRALLLLHSPSLVLITESWLSSDITDTYLQIDTYELFRCDRVTKKGGGCLIYASKNMRAEIFSDHTLSKVPDSTWLTVHTLECKILIGCIYRAPNTPSLTDTIISESFAKAASLDFACKVVCGDFNLPTINWKTHSGPPCYEGILRSLDIHGWQQHVNLPTRNHNILDLIFCHNVTPASMVVGEKFHNSDHKIVFCTLPILAKRKKLKTLNTCFQYRDYANADWSNFRFLMKHSDWNTFFTSDNLLETLEIFNTTTKSALDTTIPSKIAFKTIAPYINQKAKSKLRKLRKTYFTSKDFSALHQVYSVLEGVQSHHNKNKQTEERTALTAASKVQNLCRLLAKRMRKNENHNIHSLLHDGVTYYDQTVICELLSVWFSQNGNTSNAPDFNIKCISKSHISTINFDIRSIHTAIKTLKPNASSGVDDIPSILYKMSGPDIHTLLLKIYTLSLEAGTYPEAWKVTYVLPNTIRTEKPGRKLQTYXYHSQYFAYNGKVIQSQLSDHLLKEELIDPTQHGFIRTRSCSTCLIDFFNEVTRIRDQKKLVIILYFDIKKAFDKVPHNLLINRLQSVGIINPLLQWIKSFLTNRYQITKLNSTTSTPRPITSGVVQGSVLGPLLFIIYINNICKCFTTGKTYLYADDLKVIYKTDIGDVRSTMQTIQHELNKVDDWCKRWGLELNTEKCGWLCIGNTSLKLKLTLNKNPLLRLTSVTDLGVHYSDSLNFSEHISTKASQMRRLLGFILRNFFQKETKIILYKACVRPIVEYCSFLSSNLRLSDILKVEGIQRDFTRKILKNDQLTDYKSRCHILGLEPLWKRRLRSNLILYFKLLKNLTYSTCNIALYQDSHGYNLRDKVSTVKIEKHRSKTRENFFLIKYALIWNSLPSEVRMADKLHTFTRLIDQALTCIDLVQTNTSTSHTDIIGSLHI
>Perere-8_pol#LINE/CR1 47-1342 [Schistosoma mansoni]
MCRKIKVSSIPKKASGNKNAKLRPIAITSPFLKIMEKLLIHPLQPAIKEHCDPFQFAYKCKRSTLDAVAVLHHNIVFGLEKGKKYVRCAFLDFTSAFDSIPRHLLLNKLISIDADSWISNWLCSYFSGREQYTVFEGKCSTSLLSTVGVPQGAVLPPLLFSFFLHDLPSSTENTFVKYADDLTVCMPISTSLHPIEMNEFLSRIERWSVGNGLLLNPSKCQAVNFSLRHGQNLRSILGSHNACAIGDSLINTVSKVKYLGVLFSSDLSWSSHVLLLSKKVYRLTYYIKRLHAFGITRRLLLQFVNSCILPIILYCSPLFFPGLLRKDFAILRRVLKAVCKVCGESFEVIVNMLVDRHLKSCKLFAGVILSDTNHPLHSYLSPCISSGRTRRKYIKIHARKQIYKSSVIPYLANLLCDEQAVRVDLVNNLSS
>Perere_pol#LINE/CR1 357-4505 [Schistosoma mansoni]
VESLAGSLLKHDDLKFELKTLSPLRLLLSKDIVTSEFEDRIKVESVIDLIASEVTKRIISRNNVVIYNIPDKVAIKTVRNSILKAVNLQDNPCQCIRLNKKHQKYSCPIVFRFDSHLLAERLKESEQLVCAHTKFKNARIVSDKTTNQRLTQKRTMNENNIVEVTTNVIAPEAEPTGTANLSHVSQCTDIPMQCASLPLILIVALDNQDISDVDSNVILSSVISEAKDRTPDSIVKAHKNTAKPKKNIPIKKKVNKKPSGSRPNTKNISTALPNKSLISETMLNPTHRKGGYKDTFRSNVTRDGHYNHHVSRPTIRQTGMNQRAAWFPPNVINNKPARCNSYHHSCSGEDGILGYAPSTQPQHTGTCLNCPPKQVQPYQNKDFFRPPEIPCSTSTTIRSCYSPCDPENTLNHSPGIARTHTLDKDALGFFTLHTPFLNLLLINARSLLNKISALRTLAFLAKPSFILITETWCYPAVADSELNIQNYRLYRCDRETKRGGGCLIFALDTLTTNKVEDSILNSLPESIWISINTLNHSLLLGCIYRAPDSTDNLNDRIINAFIHASTLNFSARIITGDFNYPEINWSTGSCQSSNDEFLSILNLYCWSQWVRTPTRGDNTLDLIFGRDTIPLSVQVYNEFESSDHRMVACALPIYPSYNRPIQRTCNYRDYKHADWDLLRSLIKLSDWDEFFSCNSLTDAINIFYLIVNSCLDSCAPIKIYRISKHHELYIPAKYRNKLRRLKKRYFKSNDFTAVTQITIIFNQIKEKHRLKAINEELLALRTSSKVQNLIHIYNKRAKSTQNVDIPCILHNNSFIYDPKTIADLFSGNFANSKESLNDFVSRVICLTGNSIKSISFTCLKISKVTNKLKVSKGHGADGISSFLYKYGGPDIQLLLLKLFTLSMESGSYPDRWKTAYIIPRYKSGDKTDMNNYRPINITPVISRIMEKIISDELPNYLLTEQFIDDSQHGFLKNRSCMTCHFDFFNLVYSLRSQGYLVLVLYLDISKAFDMVNHQLLIGKLASYGVENPLLAWFDSFLSDRHQIVKINSSLSNSVPVRSGVIQGCVLGPLLFLVFINDICECFSVGKSLLFADDLKVVYSFSPHELSNIRNCISTELNKVAQWCSEWQLELNTAKCGCLCFGDTSLNLNLTINGEMLSRLHTVVDLGLRYSDDLSFTEQIMKQTSKSQRLIGFITRNLHNSESRILMYKVCVRPLLEYCAFLLISTRIKDKLRLESVQRRFIFRTLGTDSVLTYNSRCSKLGLDPLWMRRLKLNLIFFFKILNKLSFTSSQEIQYAKAPHYDIRNSLSLAKQTYSRSSLYMNYFTCEFSMLWNNLPQTIRMLNSLPLFVRSINAFCSSENALNALAHASVSYSTSEIIGTLNV
>PlatCR1_pol#LINE/CR1 633-3386 [Ornithorhynchus]
MGELECLAASEDLDIIGISETWWREENQWDTVLPGYKLYRKDRDGRAGGGVALYVRDNVNSNNIKILXDKRSTMESLWIEIPNLNKNIVVGXFYRPPDQDEESXQEMLDEIGEAVKLGQVVIVGDFNYPHIDWLNNSSGXEVEVRFLDRINDCFLEQLVLEPTRKDNILDLILSSGQDLVQEVYVGEPLCNSDHNSXKFNILAGEGRPKKTNTRIXNFRKGNYEKMRTLVRKKLKGVAKKTSDLLEAWRLXKNTXLEAQVKCVPQNKKNRRPNRNPAWLTGRVKEVIGGKKSSFXKWKAHPSEENRKVHKEWQVRCKQEIRRAKKEFEEHLARDAKANNKRFFKYIKSRKPARESVGPLDDRGVKGALRDEKEIAERLNEFFSSVFTEEDVREIPTPKLFFVADRSEELDQIVVTTQDVLDQIDKLDVNKSPGPDGIHPRVLKELGGEVAELLARVCNLSLQTATVPEDWRIANVTPIYKKGSRGDPGNYRPVSLTSIPGKLVESIIKFRISEHLEKHNLLGERQHGFCKGKSCLTNLLEFFEGVNKHVDRGEPVDIIYLDFQKAFDKVPHQRLLKKLSNHGIGGNVLSWIENWLKDRKQRVGINGHFSGWRSVNSGVPQGSVLGPVLFNIFINDLEEGVRSEISKFADDTKLFRVVKCRADGDKLQEDLIKLSEWAEKWQMSFSVSKCKVMHLGKNNPNYNYAMMGSELSVTTQERDLGVIVDCSFKSSVQCAAAAKKANRMLGIIRKGIENETKGIVLPLYKTTVRPHLEYRVQFWSPHLRKDIIELEKVQRRATKMIGGMEKLPYEDRLKRLGLFSLERRRLRGDMIEVYKIMKGVDRANTELLFTKSHNTRTRGHPLKLEGGRFKTNKRKHFFTQRVVSIWNSLPQEVVQAENISRFKRGLDKFMDERSIMGY
>Plat_L3_pol#LINE/CR1 598-3504 [Ornithorhynchus]
MDXLSPKVSEIXIDLGGGLNSRIDLGNSSVGDKVTRRKTEGTTHGYLKCLYANARSMGNKQEELEVLAQDRSYDVTGITETWWDSTHDWSAGLEGYRLFRKDRQGKKGGGVALYIKDXYTCSEAQETEGGQRVESVWVKAKGEKNKGDVMVGVYYRPPNQEEKVDEAFFGQLTKAASGQDLVVMGDFNYPDICWKSNSAGHRSSNRFLDCIGDNFLVQKVEESTRADALLDLILTNGEELVEDLKVDGNLGGSDHKMIVFKILREGRREVSKIKKMNFRKANFNRLRALVGRTRWKESLRGKGVQESWLFFKKTVLQAQEQTIPVXRKDKKGNKMPSWLNPELXRDLKGKWESYKKWKLGQITKEEYKEIARLCRDKIRKAKAGKEMQLARDIKGNKKTFFNYIRQKRRTRENVAPPVDRKGKLITDDCEKAEAFXFFFTSVFTKKIKCEQLTRASPTWDGRLESQTRIGKETVKEYLKKPDVFKSAGPDDMHPRVLKELADVIAEPLAIIFENSRRTGEVPEDWKRANVVPIFKKGKKDDPGNYRPVSLTSIPGKILEQIIKQSICNHLEEHKILGSNQRGFVKSKSCQTNLISFYDRVTGHVDKGEAIDVIYLDFSKAFDSVPHDILIDKLGKYGLDHTTVRWVHSWLEGRTQRAVINGSVSTWREISSGVPQGSVLGPVLFNIFIDDLDEGIESMLIKFADDTKLGGVANTLEDRNKIQSDLDKLEKWSXKNRMKFNRDKCKVVHLGTKNKPHKYRMGKDWLGTSTAEKDLGVIVDXKLNMSQQCSAVIKKANAVLGCINRSMTCKSREVILPLYSALVRPLLEYRVQFWSPHFKKDVEKLERVQRRATKMIKGMENRSYEERLKELGLFSLEKRRLRGDLITVFKYMKGFYGEDADQLFSVSTEDRTRGNGLKLKQERFRLDIRKNFLTVGVIKHWNGLPREVVESPSLEIFKKRIDXHLSWMV
>Q_gag#LINE/CR1 243-1376 gi|11359828|pir||T43019 probable DNA-binding protein - African malaria mosquito retrotransposon Q retrotransposon Q (fragment) [Anopheles genus]
MAAICFSCAEPLEATGCIISCAYCDATFHRGCCKLPPELIDAVLSNVDLHWSCIGCTNMLKNPRCRSVKEIGAQVGFQAALNSAVAAIGKLVEPIVAEVRSGFTLLQTASTPHNRNSDPRPATGRKRRRIIEDSASPGVNKIVNSRGNTLCAASSPNAYTNTTIAVQPAPTQPHELVGTDPLSSPLQAAPREPFTDRIWIRLSAYQRPSLWNKWSLSVKRRLATDDVIAYCLLRRGVSVDSMNWLSFKVRVPAILRDAALTPSTWPVGIGVREFFQSRQHDHQTSSPIATRNRFTTRTPATSTEHRYTTRTPTTTHRLAARTSTPPDPETTSSQQCHPPVNDTLEAPNSTLVSGPPQNHRASSPHLHQSTIDRFFLN
>Q_pol#LINE/CR1 1264-4413 gi|11359829|pir||T43020 probable reverse transcriptase - African malaria mosquito retrotransposon Q retrotransposon Q [Anopheles genus]
MIPWKHPTQHLFLDRPKTTVLHLRTYTSLQSIAFFSTRRSSAHCTQQTRQASCSDNAAQLTYRLPALSNRHNDNATAEYLSCYYQNVRGLRTKTKEFHLAVSEADFDLIALTETWLVDNIPSALLFNNNFSVYRCDRSLSGSSSRGGGVLLAVSNAYESIELPSRDRSLEYICVRVACNNAHLYVMVVYIPPQLSSEISTLRSLHDCISSFTLRLKPSDLLFVIGDFNQPSISWSTADPSSSPAYSSITHYEPTARSLANNTFVDGFKFNGLVQLNHINNSHGRMLDLLYANNAAAKLCSPVFPSVVPLVPLDSYHPALDFNIRINSSTRRNSTTRQNSTTTALYRYNFAKADYVKLNDMISMFNNSFHCSNFISLDEAVCSFSSFMLQAFVVCVPVQRPKPNPPWADRTLKRLKRVKRAAYRHYQTRRCQRSRSIYFDTHSLYCSYNRFRYRRYLSKIQRNLCRWPDSFWRFYNSKTKSTHTPKSITYKGATSANTNEMCNLFADRFADCFSPAMNDTDTIDAALVNTPAGAINMSTPFIDSEIVLSALAQLKPSFAPGPDGIPSTVLKRCQTTVAPILAKLFNASLANGYFPKAWRKSWMVPIYKKGDRTDAINYRGITSLCAIAKVFELVIYKNLLHACRSYLSPYQHGFVPKKSTTTNLVEFVTYCTSQIDAGAQVDAIYTDLKAAFDSLPHAILLAKLDKLGIPSPLVQWLKSYLIHRTYIVKIDKHMSKEIVSSSGVPQGSNIGPLLFILFINDVTLALPPDSISLFADDAKIFAPINNTGDCTFLQDCIEIFCSWCKRNGLTICIEKCYCVSFSRCRSPVTGTYFMDGTAVNRQNHAKDLGVLLDSSLNFKQHIDDVVARGNQLLGVVIRTTNEFRNPMCIKAVYNCIVRSVLEYSCVVWSPTTASSIARIEAIQRKLTRYALRLLPWQDRNNLPPYAARCRLLGLEPLSVRRRNAQCSFIAGLLNGSIDSSPLLHRVDIYAPSRTLRSRETLRLAQPRSSAGRSDPMFRMSAVFNTVSDCFDFDISTQCFKERLRLLPWPQ
>SR1_pol#LINE/CR1 gi|2636683|gb|AAC06264.1| pol [Schistosoma mansoni]
EFLVDDLSILAPLGKSDHAVLSFSFVSKTELRYPTSNKRWNFKRLNVLALQDYLQQVDWNVRPEIEVDAHWDFLLHTILCATEHSVPKMVPKSYKQPAIIKNRTRRLLSRKRHCWAEYKRTDNNGAYRQYKHIRNTCTKAIREDRLQFQTKLIDRFVSNPKSLFSYAASLRQGKTGVSQLLGPNGPTNNDSDAANLLAEHYSRTFQLTHINHTDESFTCTCTGLSEVDLSADLVLRKLQNLKKDTSPGPDMVHSAVLREAASILATPLSVMFAHSLSRGKLPEIWKLAHITPIFKGGRRSEPSSYRPVALLSIPSKIMESLVFDGILEHLSSSKFFSPQQHGFRKGHSCTTNLLTAVDKWTTILDRKGKVDVIYLDFSKAFDRVNHACLIKKLGRLGIKPPLIDWITSYLENRHFKVRINFTLSQAMECPSGVPQGSILGPLLFLIYINDLPQQVSSDLLLFADDVKLWREIRTHNDILVLQEDLTRLQSWVDDNGLTFNTSKCKVVHLRHVADHSYNLGNSPLEVSQVEKDLGVLVPYDLKSYANCDKNASQANLALVTLKRIFGQFDGRTFHIIFNSFIRPHLEYGNIVFPPSLQKDKVTLERIQRRATKSVRGLKFKPYEERLKSLNLYPLEYRRLRGDLLMTYSILNTSGHPLKQLLKLSHNTNLRGNTQKLETLHSRTDCRHNFYSVRVVKCWNS
>SjR1_pol#LINE/CR1 gi|3702848|gb|AAC62955.1| reverse transcriptase SjR1 [Schistosoma japonicum]
LDFSKAFDKVPHKRLLIKLKSYGVKDPLHSWFASFLEGRQQTVKYNNSLSLPKPITSGVIQGSVLGPLLFIIYINDIINVIKHGRPYLYADDLKIVYSYTPDVLEDMTLIQKDLDRLTAWSQKWQLPLNHSKCGILHIGNHNPQFTFYLNGSKVQILQSTSDLGIKYSGNLKFTEHASSVVSKTRKLTGFLLKNFFTREAKLTLFKICVRPTLEYCSFIFSSMNNIDRTRIESVQRSFTRRILGTNSNMNYTARCKTLSLEPLSHRRLRHNLIFFYKIITGISSSAFSPQWNQTPRYDLRNCEATLLINKYQAQQRCKFFIVLYSKLWNKLPQNIRTLS
>T1_gag#LINE/CR1 271-1497 [Anopheles genus]
MQCSTCNAPTDSANSVSCAGVCGSKHHTHCTGLSRDSTRELGRNNQLLWLCKNCNEFRNGTNSLLTSEIAALLELVKAEILTTIDSSLSSLRSAIKSDLLAEILALADKLTPVLAKPSVSQPSRTHTSTNASSLNATNTRTTKTASTRRTFTNSMELTADIQQAANDTNTVEASDSCNHYTHRTKVTSDISAGPCRTNTKSSSDPVLNHDTTNTGIAEKVWLYFTNIKSHVSADDMRVWLKAVLPTDNIDVYRLTKKGANLDLMSFISFKVSIPKSLKDLALQSTIWPVSLTVREFVDRGLPKQRIHERARFDPSALTSHRSSSANCSSAAPKSTAHPDHFLDHRSPSPQRGNQSLSQMTEILEAIQPEFPPTPPQLSPGVGLQSQNNLSNTNRSPQISPFAKRIAHN
>T1_pol#LINE/CR1 1487-4414 [Anopheles genus]
LTINRPFVIYYQNVRGLRTKYNELRLSANESGFEMLALTETWLNESIPSNMVLDSDSYNIYRCDRSRLNNERSRGGGVLLACSSRYPSVALNMNQPTLEALCIRVSFPKFRLYVGIVYVPPYLSSDRNYFESLSAFIXDAYMHMKPNDHLILLGDFNQPALGWSPAAAVRSDSSLPMRHYVPHISLNSSSSCFLDVLNLHELYQLNGVHNHSNHYLDLVLSNSAAAACSSVYPASSLLLPQDAHHPALEIALPSSLFRASRVRNELPSAPNSLSVRYNFRLTDYRKLNSILSRADWSFFYQCTSVDEAVQSFNALLTSALLSCTPIFRSPPNPPWSNRTLRNLKKDRMKYLRRYRLNRSAFNFRLFKYAASAHRLYNRARFEAYSSRLQSRFRSDPASFWQFVRIRRGCNTLPNEMVLDSRTASTPVEICELFSAHFSQMFEPPVSDPNLIEGGLLYTPENLINLSDISVSSETVVQVLFGLKRSFTPGPDGIPASVLINCKDVLAPHLAKIFNLSLSLGVFPALWKSCWLFPVHKKGCRSIVSNYRGITQTCATAKTFELCIFPTILHSCSSAISPKQHGFMPGRSTSTNLMSFVTNIFRSFEAGTQLDAIYTDFHAAFDSLPHSLLLAKLSKLGFGDGIISWLSSYLSNRSCRVKTGSYLSEEFFCTSGVPQGCVLSPLLFSLFINDVCNVLPPDGHLLYADDIKIFLPVSSSSDCMSLQHYLNAFVHWCSSNLLRLCPDKCSVISFSHSLSPISFNYTLSNSSLSRVLSIRDLGIILDSRLNFKLQLDEVLLKANRTLGFILRFTSIFRDQSFLRNLYYALVRPLLEYASIIWNPPTIDGCSRIESIQRLFTRVAFRRLFGAASLPPYETRLQLFNLHSLSFRRQVSQACFIGGLLLSDTDAPDLLSSISLYVPSRSLRPRDPLSIETRHTLYTFNDPILSCFRLFNHFYYLFDFDSSLNSFRNRIFSSNSL
>WORF_DMi_gag#LINE/CR1 188-1252 [Drosophila miranda]
MAIVCSAKKCEFGGVIIGDSFLSCWLCDNFAHIKCAGGGNFGRLNDLISKRMGLSWSCLACREIEAEMRTFMRQTRTGFLDVRKQFVALNEKFLALESQFLGLKLLSESPRRKIPHNDTNLLQPNPIGTPASHLHPSEAFPCRHATPLSVNPPTVAPEFFTPSNVLPSSTQLPNSINPIPAVSVAVTSDAVSAPSAGVLVADDVLPIPAPIPAPIPAAIPTPIPATAIAANSSALVPRSLLGVAPPSRSRSGLQLKAVVPRKAIFVSRLIPEATTEDVKQHLATKLNTSPVDIVVTKFSFKHKRNISSFKILLPDSLLSCSLEPSIWPEHTIVHEFLLKDSNSNPRITEHAPKN
>WORF_DMi_pol#LINE/CR1 1192-4089 [Drosophila miranda]
VPSQRFELESKNYRTCSKKLMYYFSMHYQNVRSLLGKLRQIHTNSASFDFDAIAFTETWLNSSVNDHEIFIDSYTIYRMDRPSFAGGVLIAVKSVFSSELFPFNNIHGIEFVAVKVRVGSAFFYLTCSYIPPRSDAELYLHHLSAINNVVSTLGCNDRIIVMGDFNLPFLSWLPCNDANLLFPNCHNDFINGLTDISLVQINAVKNIRDRLLDLVFVNDGSLTTVSRASPISLPEDPYHPTLLISLECTQSGGADSSMAPCHIKCFRKTNFIDLDLHLSRVDWSFLYSLPNIDATVNSFYSSIYSALNTFVPDITVPVSSKPPWFSKYLSYLKNNKSRLYKKYQKSGSTLALALYSSARSLFLAVNSQCYNHYLSQCSSNFRSDPKKFYSFVNSKRKSNVFPPSLHYQNKTEASAVGIANLFANFFQTTYSSHIYNASTPYPYQLPQANSIFLPFFEESVVLEGLSSMDISFSAGPDKVPSCILKHCAQSLCKPLTFLFNLSLEQSCLPVIWNESYIIPLHKKGSRSNIENYRGIAKLSAIPKLLEFLVTRQLQHLCCSLISPSQHGFFRHRSTSTNLLEFSNLIHRGFQIGLQTDVVFTDFSKAFDSVNHALLIQKLSLLGFPTNLLDWILSYLSNRTQRVLFSNVLSNTVNVTSGVPQGSHLGPLLFILFVNDLPQVITYSTTLMYADDVKICLSYSDWYLHTRLQLDLSELLLWCSTNLLFLNLSKCKLMTFYRRAPHFVSYVLGNHVLERISSSNDLGVLFDHKMCFNTHIAATVNKAKGVLAFIKRWSKEFDDPYVTKQLYISLVRPILEYCSCVWSPQYKEQQAVIESVQKQFLIFALRNFNWDSGRILPPYRSRLNLIDLPSLHHRRICNGVMFVHKLLLGTVDSQTLLGQIDLAVPSRPTRTFRPIRLPICRSNYADHEPFRVLCHNYNSLCLTLSPELSLKLIACNIYNHLNLANF
>ZENON_BM_pol#LINE/CR1 1-2961 Identical to  gi|34099638|gb|AAQ57129.1|  endonuclease and reverse transcriptase-like protein  [Bombyx mori]
MKVRKRKRVLSATPHSTFNVDFSNVRGLHSNLDAVHHHLETAQPALLFLTETQISAPDDTSYLEYPGYVLEHNFLRKAGVCVFVRADVCCRRLRSLEQRDLSLLWLRVDHGGCTRVYACLYRSHSSDAGSALIEHVQEGTNRVLEQYPSAEVVVLGDFNAHHQEWLGSRTTDLPGRTAYDFALAYGLSQLVTQPTRVLDIEGHEPSLLDLLLTTDPAGYSVVVDAPLGSSDHCLIRAATPLSRPSRRTTTRYRRVWQYLSADWDGLREFYASYPWGRFCFSSADPDVCADRLKDVVLQGMELFIPSSEVPVGGRSRPWYNNASRDAAHLKRSAYVAWDDARRRRDPNISEERRKYNAASRSYKKVIARAKSEHVARIGERLKSYPSGSRAFWSLAKAAEGNFCRSSLPPLRKSDDSLAHSAKEKADLLVKLFASNSTVDDGGATPPNILRCDSSLPEICFTQCAVRRELRLLDVHKSSGRDGIPAVVLKTCAPELTPALTRLYRLSYCANRVPSSWKTAHVHPIPKKGDRSDPSSYRPIAITSLLSKVMERIINIQLLKYLEDRQLISDRQYGFRHGRSAGDLLVYLTHRWAEALESKGEALAVSLDIAKAFDWVWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLFILYINDMLSIDGMHCYADDSTGDARYIGHQSLSRSVVQERRSKLVSEVENSLGRVSKWGELNLVQFNPLKTQVCAFTAKKDPFVMAPQFQGVSLQPSESIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRLLLYKAQVRPRVEYCSHLWAGAPKYQLLPFDSIQRRAVRIVDNPGLTDRLEPLGLRRDFGSLCILYRMFHGECSEELFEMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVLSGRQRLGSAPGIAEVHGRR
>CR1-4_BF_gag#LINE/CR1-L2 234-935  [Branchiostoma floridae]
MASTQRNTRASSQTQAKSVELREKLSADNKLLLDAIEATLLLPLKSEIQELKSQLAGVADEQREIKSSVAQVKSQINTTDAAVRETSARLNDLEQYSRRNCLLLHGAVSPTSDTVQFILDTAKNTLGIDLSEGDIDRAHPLPRRKGSDGQRPPPIVIKFVSYTARHKFFSAKSKLKGSKLFVTEQLTKENALLLRATREKMGNGWSMDGRIYCLHDSVKKRVANRTDLDNMEL
>CR1-4_BF_pol#LINE/CR1-L2 1256-4456  [Branchiostoma floridae]
MKSLSVCHANVRSLPANDFVKLHELESVALDVGFDVIALTETWCDETIPDSDISLSSYQSPLRRDRNRHGGGVALYASNNLPCKRRSDLETDGSETIWCEVKLKNWTVYICTCYRPPGQNVDERTAFIDHLQRAVDTIVDNGPSQQNAIVLLGDFNGNSDNAAGMINRFVSDNNFSQLITEPTRSTDTSASVLDLIITDSPGMFVDHGILPPLANCDHAVTYGTMSVKVPKVNAYKRTMYDFTNVDYEELNSKILEVDWNSVISDHIPDVNASAEAFMSTLTDVIKTVIPSKVVTIRPRDKPWMTCEIRRLLRRKRRLYGRYKKTNNSSLFCAFKRVRNNCIDLIRKAKRNHRHSLCLDLANPTSNPKKWWSVSKEIFLGKADRVLPSLLENGNVMTDDKAKADILNNYFASQTYLNTDGASFPNFVPRTELALNSINCCPANVYSVLSNLNINKATGPDGLSNRLLKCIAPSIAQPLSHLFNVSLEYGCFPSIWKFSNVVPVYKKGDKQAKENYRPISLLCCVSKVFERIVYAPLSAYLHGNNLLTDRNSGFTPGDSTVNSLTHLVHKLHKAVDQGFEVRTVFLDISKAFDKVWHDGLLFKLSQLGISGSLLQWIQSYLTNRKQRVVINGACSDWLPIDAGVPQGSLLGPLLFLVFINDLVDNLQTDANLFADDTSLVEVVLDPLVSANRLNHDLRMVGEWSDQWLVTFNPLKTELMTFSMKRVKVYHPPLVFKGVVLKEVDSHKHLGLNLKRDLSWSYHVSTLITKAMKRINLLKRISYFVPRGTLETLYVTMIRPLLEYADIVWCGLLGKDCDLLESVQMAAARVCTGAMRGTKHESLLAEVAWDTLADRRKKHQLIQFWKIMNGLAPLYLHNIIPPRICDTVPYNLRANQNLTSIACKTEKYKRSFLPSTVHLWNELPTNAKAVLSINTFKKELDSLFNKPTKYSHFSYGQGRSAVHLTRLRLNFSQLNYHLFQHHCIDYPTCKCGYHCETTEHYLLHCTLYTSQRSSLLSAVSNIIVDLKHLNDTTLCTLLLSGSTSLSHQQNCNIFDLVITYIHCTGRFS
>CR1-5_BF_pol#LINE/CR1-L2 277-3516  [Branchiostoma floridae]
MGKFPLDKQRHLSICHSNVRSLSANDFIKLHELETIALEDDFDVIALSETWCDSTIPDSDISLASYQSPMRRDRNRHGGGVALYVRNSIPSKRRSDLECDLFETIWCEIEANNWQVFICVCYRPPGQSAQERTAFIEHLQNSADVIMTDPGGKTAVVIVGDFNNTSDNSSVDIDRFVADNNFVQLIREPTRITERTSTLIDLIITDSPSLFTECGTHAPLSNCDHSLIYGKMSLRIPPVKTFKRTVYDFGKADYEGLNSKILTIDWNAMFSANLPDINATTESFMATLSSAIRMFVPSKVITVRPRDQPWMTCEIRHMLRKKKRLYLKYKRTNSPDLFQTFKHIRNACTSLIRKAKLNHRLSLCLDLANPATNPKKWWSVSKEMFLGKLDRAIPSLIDNGRVVSDDKAKAEAFNQYFASQTHLNTAGATLPQFTPRTESTKNCINCSPLDVYTILCNLDVGKATGPDGIGNRLLKHIAPSLAAPLSNLFNRSVQGGCFPGIWKRSNVIPVHKNGDKQTKTNYRPISLLCCISKVFERIVYIPLSSYLYENKLLTDRNSGFSPGDSTVNSLLYLTHNMHQALDQGLDVRTVFLDISKAFDKVWHLGLIFKLKQLGITGPLLAWIESYLNDREQRVVLNGACSEWLPIGAGVPQGSILGPLLFLVFINDLVDNLETDGRLFADDTSLTEIVRDPITSAVRLNHDLRLVHNWSRQWLVTFNPLKTQLITFTTKRTKVVHPPLYFMGIRLTEVSSHKHLGLHLTPKLSWSLHVSIITTNAMKRTNLLKRISRFAPRQTLEILYKTMIRPLLEYADVVWDELSVKDCNLIESVQLTAARICTGAMRGTSNDSILSEVGWETTASRRQKHKLIHFYKMVNGLTPEYLCEIIPPQICDRTTYSLRANQNYIQIPSRTEKYRRSFLPSSVLSWNKLPLTTRVSPSVASFKNELESFFYRPPTHLHFSHGPRYPAIHLTRLRLNFGQLNFHLFQHKCVNSPMCKCGHPNESTIHYFLHCPLYNDARLDMLSSLTTMFMQGILPFDPRHTTENILCSTLLRGNPVLSTIQNCHLFDVVFKFIKQTDRFS
>CR1-6_BF_gag#LINE/CR1-L2 99-863  [Branchiostoma floridae]
MTTTPSTREVKRVSDLVDSQLRLSFDKLKEEFLGAVKQDILAAIKAEVRHELDQFKSSFQAEVDELKHTIVEKDEELTTLKVRLAEAESHADRNEQYSRKHCLLVFGIPPPPSPEERKSEDCASTFMDFTRKHLDVSVQRSDIDIAHRVGRPRDGAHTVIVKFTNYAKRQEVYKAKKRLKGKTNSTGKSYIIRENLTKRNLELYNSAKRLPCVSSAWTQDGKIFVKVNCEGGDPEIHRITGPTDIHQLELMANK
>CR1-6_BF_pol#LINE/CR1-L2 1288-4518  [Branchiostoma floridae]
MPVNNQKHFSLCHANVRSLPAHDFTKLHELETIALEEGYDIIALSETWCDSTIPDVDMYLPSYQVPMRRDRNRHGGGVALYISNSVPCKRRSDLESDTSEAIWCEVDIGMKLFVCCCYRPPGQSAEERSTFFEHLQQSIDVIIDSGPSDKTTIVLLGDLNANSDNAASTIEMFTSENNFDQLISEPTRITDTSSSLLDVLITDSPSLFTECGTNPPLSNCDHSLVYGKMHLKIPRVKTYKRTVYEFHKADYEGLNSELLLIDWGSIVSENIPDINALTETFMTTLSTTIARFVPSKQVTIRPRDQPWMTCEIRQMLRKKKRMYRKYKKTNRPEIYNTFKHIRNSCTKLIRKAKHNHRLGLCLDLANPSSNPKKWWSVSKEIFMGKIDRTLPPLVEDEFTITDDKTKANVFNCYFASQSNLDTTGASLPLFTTRTDTVIDCIICSPSEVYEILCNLDVNKATGPDGLGNRLLKNVAPSLANPLSKLFNISIQHGCFPDIWKCSNVVPVHKKGDKQSKENYRPISLLCCVSKVLERVVHSSLSSYFHQNKLLTDRNAGFALGDSTVNSLTYLVHKIHQALDQGLETRAVFLDISKAFDKVWHTGLLFKLRQLGVTGSLLAWIESYLNNRRQRVVINGVCSEWLPINAGVPQGSLLGPLLFLVFINDIVDDLLTDSRLFADDTALLEIITDPVASADRLNRDLTSVSEWAAQWLVTFNPQKTVLMTFSLKKNKVRHPPLYFKGVQLTEVESHKHLGLHLTRDLSWSLHVSILVTKAMKRINLLKRISCFVPRKTLETLYKAMIRPLIEYANVAWCGILKKDSDSLESVQVSAAKVCTGALRGTNHSRILTEVGWDTLATRREKHVLIHFYKMASGSAPNYLHELVPPLIRDSTPYGLRDDQNYLPIALRTEKYKRSFLPAAVFSWSQLPLSAKTSPSISIFKRELESFFDSPPRHTHYSHGHGRPAVHLTRLRLDFSQLNSHLFKHHCITSPTCECGNSNETTEHYLLHCELYNSERIHMLHSISRLNLEELLSPDPLNSSDNTLCTLLTMGSPFLPHSINCNIFDYVFNFIKMTGRFT
>CR1-8_BF_pol#LINE/CR1-L2 714-3560  [Branchiostoma floridae]
MFTIATTNVRSLNPFTETGHQKITELESHLRTNNISVMGLTETWFNENILSNDISIPGYNIMHRKDRLGRTGGGVALLVSDTLTSRRRSDLESCDNTWEDLWIEIRVAGQKILASCVYRPPSAPDSFYDQLENSLSKAASEKGLTVITGDFNCHHTEWGDSSTDNHALQLADIIERYGLHQSQHQPTRSTLTRQSTLDLIILSDPSRINEMFTLAPVGNSDHATVICKLGISVSTKHIKKHVWYYNRADFDRFRAELGKVNWNNCMCGPTIDEKWNSWKVKFLNIAKNIVPNKTKKVVTARKPWITTELLEAISQKTELYNTFKCSPTPENWRNYTQTKNRLTKDLRRAEAEYYSTVSDRLKTAEGARAFWSVLKQATGKSKSGIPALSVNGIVLDKDKDKAETLNDVFVRVTKEATHPNFTSRLPKFTDEVLSTIHVSEEEVLGVLQGLHPNKAPGPDGITNRLLKEGAPAISASLCQLFNLSLATGQIPKDWKQSNVSAIYKKGDRTDPSNYRPIALLPTVAKVLERVVHNRLYTYLTVNNLLNVNQSGFKKGDGTVLQLLRLVDNWAKSIDDSNVSCTAAVFLDVRRAFDTVWHDGLTYKLSRYGVSGPLISWFNHYLTGRQQRVVINGATSSWRYTYAGVPQGSILGPLLFLVYINDIKDLPCTSDINSFADDTSLSNSGPTAEQVASTTNSDLQLVSDWFDVWGLELHPGKCKVICIKSARSRVVLPPIYISGQLIEQVPFYSHLGVTLHQALGWNEHAQNTSSKARKVLGYLWRLRGKLSKEALELAYLTLVRPRLEYASILFTNMSVAASKVLERVQYHAGRLVTGAAPRTPYSDVLQELGWDRLSTRRDYHRLVIMYKLVTGTVPPHLQPLIPQTRQTQTQLRLRNSSHLHIPRCRTTTYSNSFIPYTSRLWNNLPNHITDSTTFPQFKARCRSHLLSGF
>CR1-9_BF_pol#LINE/CR1-L2 457-3609  [Branchiostoma floridae]
MFLNRILSYTSSTIRALRTNIKPTPLVKRAIFDCGINKYHRRPRGCRGGKNLTRHNPTLTDTSIAPPATYEVENRDRWMNLTNNDKCPPDRHKDKKLELWYTNIRGLRAKREHLSVRLAESYTKPDIIMVTESKLDSSILDNSPDINIDGYLIERKDRNTGKDWGGCLIYYKSGIGLHRRHDLEPPEHELMICTIKLHTGTLLLSLLYRPPGQRVIDCAPIDWYTENLDHLRTKTKAMGTILAGDYNAHHKEWLLSKKTDPPGRHTLTLCTTHGLTQLVKGATHQKGNRLDLIMIDTPNICSDVHIEPEIGKSDHFLLTTSIPCSPVLEKTTPRKIWIYKKADWHALREELAQTNWDDLLDPENPERSCTNVTKAIQEAMKHHIPRRELKTFDGKPEWYNGACERALQKKLKSWHQYKANETQETRTRYNKARNDYTYVTRKAMKAHKKRVKAKMTTGLKNGSKSWWWTAKRLMGQGGQCDIPLLTSGNQTYIHPEEKAECFASIFADKSTISQEENEKEVPLVTTRTTSSLEEVTFCPDQVHEELSTLDTNKATGPDSIPARVLKQAAPELAGPLARLFQLLLDKHHMPKQWKIANVIPVHKKNNKQDPNNYRPISLLSIISKVMEALINKALWSHINKNRLISNNQFGFRAGHSTTDALTFVSQLLHDTKDRRQESRLICLDISRAFDRVWHRGLIAKLNAIGVKGSLLKWIEDYLSNRELKVVISGKTSTSKVINAGVPQGSILGPLLFLIFIDDITEKIRNTAMLYADDTSLMNIIRKRQERTLAAQSLNTDLMGIQNWAKDWNVLFGATKCKSMIVSNLKDVEGNHPDLTFMDTILTEVEEVDLLGLTIRRNLTWSHHIDKMSTDAGKRLGLLRRVSPYLSPEQRATIYKCMVRSSMEYASTVWMGASATSLSSLDAIQRRATKIIDMPQDSLDSIQIQPLEQRRNVGALSLLHRMYHQDAPTLLNNLLPEPYVHRRETRLSTSQHSAALEPVKSTSSCHKRTFLPATVKLWNCLPQDIVNIRDLKNFKRIVNAHLTDIRQRDAL
>CR1-10_BF_pol#LINE/CR1-L2 1-3132  [Branchiostoma floridae]
MGIDLFLYRLTIGLFLSRYKQCSKMAGKSNPSSCKLSVVLLCITMMAALTVFTCLCSIGTDNVSAEFTQWKPAIDLTQHYDVHPNPGPDLSELLLSTDFRSKGLLTIAHLNARGLVPKIDELRCLASTMYISIICVTETWLSSDISDSDMELEGYNLYRRDRNRHGGGVLIYVNDQLYARRRSDLENDGTESIWCEVTKSNVTILINCTYRPPSSDDTFFDIYESQVQKATSNPQTVNLVLGDFNSKNRDWLHSNATDNTGRLLDNIFLNHGLEQMLHEPTRGSNLLDLIAMSHPSMCYQSGTLAPLGDSDHLTTITTLNLQTTRLSGKKLVWLYKKANLDALCNDLSQAPWDTNFIFDTMDDIWNSWYIMFMDICRQHIPHKLISVNRTAKPWIHQNKEIKAAIRRKHRLHSRAKSKNTPEAWSAYRKQRNLVTTLTRNAEAAYIQEVTEDVEAGNTRRFFSFAKSALGKASTGIPALKDGTDIIERPEDKANALNNFFIQQTDLNDRNDSPPTFQPTTIPETTLSNLQLTVDEVRQQLKTLKVGKSCGPDNITPNLLRQVADTICAPLTRLFNTSLSLGQVPSGWKEANVTPIHKSGSRHLTNNYRPISLLNIVPKVLESLVNKHLIKQINPVLSHHQSGFRAHDNTTLQLARLVEEWTRAMDRGEVVGCVFLDLRKAFDKVWHQGLLTKIRAHGIRGSMLNWFHSYLSNRRQRVVIQGGTSEWKSPLAGVPQGSVLGPTLFILYINDLPTCCTQSDANLFADDTSLSTSNRSVQHVVNSLNTDLRSVSNWLTNWKLEANEDKCKVMFITTRTLPRPPAPVILGGCTLQVVTSYKHLGVTLTNTLSWSKHIETTSTKSRRSAGLLCALRKKVPKDILLRLYKTITRPGLEYADVVWAGLTKRDETKLESIQYQTARLISGQHGLPYPSYQSLYTQLSLPSLQFRRQFHTAVTLYKLLNGHCPPHLQTLIPRTRASATESRYSLRNSDHLTSELTKSTRGQKTFIYRATALWNTLPTATRTATSTASFKRKLWECLGNPYAW
>CR1-17_BF_pol#LINE/CR1-L2 103-3549 [Branchiostoma floridae]
SVCRVICSIVGTELNQYRAAIGTFYNIRYGLRLLSSKFCYIGINTISFILSIFYSNFLLLLIVLSNDIHPNPGPIQPTGTSKCLNIFHANVNSLIAGTKLDELATIANRFQIEIIAITETWLSGAIPSEDLVIDGYQLPLRRDRNRHGGGVLVYLSTWIPFKRRVDLEPQLFESIWIELRVKSFKVLFSVYYRPPGQDATTVNEFMDSLSNSVQLARESHPDAIVIVGDFNAKHQQWWHLDQTTSVGAKLFQSTQLLNLTQIINEPTCDLSQNPSLIDLIFTDAFNYVDKTSILAPLSGCHHSPTICSMLFSVYFPKPYSRIVWDYRNINFDKLSEFCTHPTWCDIFLCSSVDESAVKLSQLILEAKDLCVPSKSILVRPKDKPWITRDLRTLMRLRDKLHKAAKLSKSSTNWAAYRRVRNRLSNAISHSKSTYYKRLINSLDDPSTLGKKWWHIVKYFYKPKVTSTIPPLKEGSSFILDSTEKAELLNKYFASQSTVDDSNASLPPFYYLTDQRLSEITTSAEEVCLFVGNIDIHKAHGQDNIDNRFLKVITPLIADKIAYVFNLSLCHGTFPEIWKYANVIPIFKKGDPQDKCNYRPVSLLSSLSKVLEKIVYKHLYNHLTQNSLLYRLQSGFIRGDSTVRQLVYFTHVILEALDSGREVRSVFLDFSKAFDKVWHTGLVYKLQKNGIEGPLINWLYSYLQNRFQRVVIDGQSSNWCGISAGVPQGSVLGPLLFLVYINDIVEGLASQPMLFADDSSLLQVIDNPINDALSLNSDLEKIHLWSTNWLMELNPAKTEEMCFTSKRLYPVHPPLFLNKTMIKSVSSHKHIGVIFSSNMSWHQHIESIVTKASKSVQLFSVLKFKLSRQVLEKIYKSFIRSLLEYADIVWHGCTIEESNLVERIQYHCSLIVTGAIKGSSYSATRKELGWESLSDRRHIHRLLLFHNIVNGLTREYLTTLLPYAITVICNYDLRNSRNLRPIKFSTDRFGKSFTPYSITAWNNLDLTLRTLDFSKFREHLFKTIRPPKFSHFSFGSRHSCILISRLRMGTCSLNYSLFTRGLVSSPACSCGCPYETISHYLLHCPTYNYQRSVLIGKLSGLLVHILDFHSLANNAKEMLILQGSSFCSFNVNCRIIEATHVYIATTNRF
>CR1-22_BF_gag#LINE/CR1-L2 121-1494  [Branchiostoma floridae]
MPTVSKFTRQRSVKVTFLQVEDAQFSDAIELLKKHGVNPLTDIVGIQRRTRGVCEITFKSQSSLAKVSPRLTSDSAVDVELYGSGLTVITAFGIPVEMDDNFIRHRLREFGTVEDSRFLTYANQGFPEILTGTRQYRMKITKHIPNSIRIGSELVTFRYNGQPRICHRCGSDEHFVAACTAVKCTRCFEIGHLATDCDQDIKCNICGGEGHSARSCQLSFANRLNVTTSWTKITPTQPNDKSVKKPVTPGENEYTSQSSVQDNTPTVPKVVVSTAEPQNGVVSTPEPPNGVVSTPESPNGVVSTPESQDGGKEPPGGETDMEDAEDLVTSQTDGLLLKLDDSGDISAEYETDEESVNKRPLPSSQSDSDDSDTSARRTGKATGKKIKKDADASPSESDDSDTSARRNGRAVEKKSKKDADEKGTTKTLPSPGKALVSYKTKVVPSSSLRKKGRKGPK
>CR1-22_BF_pol#LINE/CR1-L2 1503-4523  [Branchiostoma floridae]
MFDNPLTTIWLFLLVALSLRIGTDIVTTGSTYLNPPMDPTQQNIRHPDTASDMTELLLNPNSKNLLTMVHLNARSLLPKIEELRSLVSTMKFSVLCVTETWLSSEIVDRDIELEGYQVYRKDRNRHGGGVMMYVSDSLYTTRRGDLENDEIESIWCDVTKANTNLLINCSYRPPSADDTFFDLFETQIQKATDQAHAVKVILGDFNAKNSNWLNSNTTDNPGRQLDNIFMNHGLEQVLHEPTRGRNLLDLIVTSHPVMCHQTGTLAPLGDSDHLATATALNLKANHHSGKRLVWLYSKANIETLHQHIAAAPWDINHVFDSMDDIWDSWYNMFIAICKQHIPHKFVSTTRTAKPWIHSNKEIKTAIRRKHRLHSRAKRINTEVTWATYRRQRNLVTALTRRAESAYIEELVNDVETGNTRRFFTYAKSALGNTSTGIPALKVGSAILETPEEKANALNNFFINQTDLPARNDPAPTFHPTTVPGTVLDSVQLSVEEVRQQLSSLKVGKSCGPDEISPRLLRLVADPISAPLTCLYNKSLQLGQVPSEWKKANVTPIHKAGSRHLSNNYRPISLLSAVSKVMETLVNKRLIAHINPILTDHQSGFRPLDNTALQLCRLMEEWTDAMDRGQIVGCVFLDLRKAFDKVWHAGLLAKLKAYGINGPMLNWFTSYLSDRRQRVVIQGVGSEWKSPLAGVPQGSVLGPTLFILYINDLATSLTQCQTNLFADDTSLSSCHRSIDSVVASLNSELSSVSTWLSKWKLEANIDKCKVMFITSRALPRSIPPVILGGTVLQVVTSHKHLGVTVTNTLSWSTHVEIISTKARRSSGLLCALRKKIPKNLLLRLYTMITRPSLEYADIVWAGLTKRDQKILESVQYQTTRIISGHFGLPYPSYERLYSELSLPSLQYRRKFHTAVTMYKLLNGRCPPHLQSLLPHARASAIDSRYPLRNSEHLTTPAYKTTRSQRTFVSRAISLWNSLPSSTRTASTISSFKNRLRTSPDNKYSVNA
>CR1-23_BF_pol#LINE/CR1-L2 1-2478 fragment [Branchiostoma floridae]
RADFDNFRLELGKANWTSCMSGSVNARWNSWKDKFLKIAKNTIPNKTVKVNHRSHKPWITTDILDMIRQKTDLYREYKSSPTQQNWTNYTRCKNTLTSELRRAEREYYNSIGDNIKSADDCKLLWSVLKNATGKGRMGIPSLLYQGRTLDKDCEKAELLNNIFVQTTMDSKHPDYMKRLPLYTDNELSFIQLSTEEVYDVLLGLPTNKAPGPDGITNRLLREAAPAISASLCELFNFSLATGHFPTEWKQCNISPVHKKGDRTEPSNYRPIALLQTIAKVLERLVYNRLYTFLTDNNLMNPKQSGFKQGDGTVLQLLRLTDDWAKSIDDPNIACTAAVFLDVKRAFDTVWHDGLIYKLTRYGIHGSLLAWFTNYLSGRQQRVVINGTASTWGSPTAGVPQGSILGPLLFAIYLNDIKDVPTISSLNCFADDTSMYNSGHTAEEVASTTNADLCLVSDWFSDWGLELHPDKCKVMCIKAYQSKVQLPPIYLAGQILEQVTSYTHLGVTMHYTLRWKEHAETVSSKSKKVLGLLSKLQRKLSREALELAYNTLVRTKLEYASILFSNISVTASKTMERVQYHAGRLVSGAMARTPHDKLLEELEWDSLATRRDYNRLLTMQKLVTGSVPAHLQPLVPTTRESRRRLHLRLRNDTHLQVPYCRTTTYKNSFVPYSTRLWNSLPMEVKEATSYNQFKKKCRDHMLSSRQHQKFRRLGNRQSNILTTRLRLGWCQLNSTLAKFNITTRSCACGATSETVAHFLLHCPLHTAARQTLASSVLQLVGQSLSTGVLLNGSPGQNSATNQKLSDALHSFLTSTNRFTAPSICSS
>CR1-24_BF_pol#LINE/CR1-L2 1-2874 fragment [Branchiostoma floridae]
MFQGVIAVVLTTVMFTIGSSNVRSLNPHTASGHYKTSELEEILRTNKISVMGITETWLHHGILLNIPWYSTIHRKDRQGKTGGGVAILISDTLPSKRRVDLETCDSNWEDVWVEVTVAGNKVLVSCVYRPPVAPDSFFDQFETSISKVATDKGTIVITGDFNCHHTDWGDTSTDNNALNLVDIIDRYGLYQCQHQPTRCTPTCQSTLDLMILSDPSRIDDMSTLAPVGNSDHAVITCRLNLSIPTVHPTRKHVWYYNRADFDVFRSELSKINWNSCMHGSIDERWNSWKAKFLNVAKNTIPNKNIKATAPRKPWVTSELLEAIQHKTELYKTFTSSPSNENWKSYTKAKNRLTKDLRQAEAGYYAAVSERLKTAEGARQFWSVLKQATGKGKSAIPALSANGSVVAKDKDKAELLNDIFVNVTSEATHPDCTRRLPRFTNKELNTIVVSVEEVERTLQTLQSNKAPGPDGISNRLLKEAAPIICASLCELFNFSLSTGQFPLEWKRCNISPVYKKGDRTNPSNYRPIALLSTVPKVLERLVHNHLYAYLMNNNLINVNQSGFKKGDGTVLQLMRLVDEWAKSIDDPNIACTAAVFLDVRRAFDTVWHDGLTYKLSRYGVKGALNMWVADYLTGRQQRVVINGVASSWGHTKAGVPQGSILGPLLFLVYINDIKDLPCSSNINCFADDTSLSKSGPTAQEVASTTNTDLQHVSTWFVDWGLELHPDKCKVMCIKSPRSKVQLPTIYIAGQIVEQVPFYTHLGTTIHQTLRWTEHVQTTSNKARRTLGFLWKLRGKLSREALEMAYNTMVRPKLEYASVLLGDLASSSSKMLERVHYQAACLVTGAARRTPSSVVMQELGWDSLATRRHSQSMVLMYKLVNGLVPPHLQPLIPTTRGEHRTTRLRLRNSTHLHIPRCRTQTYQSSFIPHASRLWNDLPQAIKQAGSLRLFKRRLANWTD
>CR1-26_BF_gag#LINE/CR1-L2 127-870  [Branchiostoma floridae]
MGLTVKEKEEVIPNLIDARIKATIEAALVTALKQSDVLATIVPTIVSAVKESVRSSIQDELKKLQDQLVQQERKCTSLQEAYNNLEAKYNDLEQYSRRNCIVISGIPEPPVEEGTDNVVMELVNNKLKCDPPINNQHIDRSHRLGKPRTDGKPRPVIVKFVSYRQKSAVMRAKTKVDARDVLRKDKVYINDNLTKGNMQLLKEARSLVKSNHLNQSWSYDGKIFVKTLNGERQMIFKQADLDIFRSA
>CR1-26_BF_pol#LINE/CR1-L2 1089-4469  [Branchiostoma floridae]
MYRAVIGLFSAHSRLISKERFRLTLNLDIFLSYTTVFISFVVILVAGDVHPNPGPVCRKQFNVMHLNVNSLVAGTKMDELSALAVRLNLDVIAVSETWLGDSVDSFAISLDGFQLPVRRDRNRHGGGVLIYISDQIAYKRRLDLESPSVECIWLELFVGRSRLLFSVYYRPPGQDSKTVDEFVDLFSDSVFTAESSQHDGIIVTGDFNAKHEAWWAHDPITSVGTKLLQASKMLNLTQVIKEPTCDLSRSPSLIDLLFINEKKLIKSTSVLSPLSGCHHSPIVATINLSLRPPRPYVRTIWDYSKTDHSLLALFSSEPIWHEVFYCDTVEEASKKLMELILEAKIKCVPHKDILVRPRDKPWISPDIRRLMHQRDKLHKKAKLTNSPIHWSSYRLIRNKLVHQLSLAKSNYHNRLVASLSSPPSSNKKWWHIVKHFYQSKVNSTIPPLKSGNCFITDSREKATMFNLYFSSQASVDDSSARLPPLDFLTSARLTQCVTSAAEIELYVSDLEVSKACGYDNVDNRFLKSICPYISDKIAYVFNLSLNHGVFPESWKRANVVPIFKKGDPEDVSNYRPVSLLPCLSKILEKIVFKHLYNHLMSQNLLYSLQSGFIRGDSTVGQLVCVTDKILEALDSNREVRAVYLDFSRAFDKVWHKGIIFKLQRNGVEGPVLNWFHSYLSDRVQRVVIDGQHSDWCNIRAGVPQGSVLGPLLFLVYINDMVDDLSSCPFLFADDSSLVDIVDSPTETASSLNSDLSKISSWASTWLMKLNPLKTEEMCFSRKIDPPCHPPLFLDNCVIQSVKDHKHIGVFLTSTMSWEKHITHMIAKVSKRVSTLNKLKFKLPRHVLEVIYKSFIRPLLEYADIVWHGCTISDSRRIERVQYECSLTVSGAVRGSSYLSLLSELGWEKLSDRRHIHSLTMFHKIVHGHTRQYLQELITPEVSASTPYDLRNKHNLQSPACTTTRYQRSFIPYATYHWNGLDIAVRSFNPSTFKNYLIKLVRPSPNTHFSQGPRYACVLLTRLRIGTCSLNFSLFTRNLVDSPSCSCGSRCESVVHYLLYCPNYNQLRKTLLCNLQDLLTLDLKTTSDPVLTQLLLRGSPTLPTETNNHIMQLTQTYILQTNRFQTD
>CR1-28_BF_pol#LINE/CR1-L2 1-3095 via tfasty with CR1-2_HM_pol, 1 frameshift and 1 stopcodon. [Branchiostoma floridae]
ITETWLGSTVDSEAISLEGFQSPVRRDRNRHGGGVLIFVSDQIAFRRRCDLESLTDESIWLELFPGTFRILFSVYYRPPGQDSVTVDSFIDSLQTSVFTAAASNADSIIITGDFNAKHSAWWHLDSNSSLGSKLLQASQMLNLSQMITEPTCDLSRSPSLLDLLFTDTPNLVKSTSVLSPLSGCHHCLCHCELxLLYQTRPYVRTLWDFSKIDYATLVESSTDSKWLDIFYCNSVDAACNMLIDLISETKTKSVPKRNITIRPRDRPWMTARIRELMRKRDKSHKKAKLCNSPSLWASYRKIRNKLVNEIASAKLNHNTRVTNSLLNSPTGSKTWWHLVKTIYRCSATTTIPPLKCNDHYICDSSEKASEFNRYFSLQSTIDDTNARLPTFDYLTNARLFICETTATEVELYVSELDVSKAYGWDNIDNRFLKIICPYISDKIAYVFNLSICHGIFPEVWKRANVVPIFKKGDPCLVSNYRPVSLLPTLSKILEKIVYKHLYNHLMSQNLLYSYQSGFIRGDSTVNQLVYISNKILHAFDENKEVRAVYLDFSKAFDKVWHKGLLFKLQRNGVEGPLLNWIQSYLFGRKQRVTIEGQNSDWSEISAGVPQGSVLGPLLFLIYINDMIEGLDTHSFLFADDSSLLDVVESPLLSANRLNSDLSKISSWTTMWLMELNPSKTIEMCYSTKAKPPTHPPLFLGSVQIKSVNCHKHIGVHLSSTMTWNTHISKMLANASKKVSVFSKLKFKLPRKVLEIIYKSFIRPLLEYGGVVWHGCTTSDSDLIERMQYECSLTVAGAIRGSSYSSLLTELGWEKLSDRRHIQTLILFYKIVHGHTRQYLNDLIPPLVSDSSSYDLRNKNDLLSLKCTTTRYKKSFIPYATYHWNNLTLADRSLSLPQFKKKMVKSVRPVSVPYFSIGPRFTCAILTRFRLGTHSLNSNLYSRNLVTSSACACGHHCESIYHYFLYCPNYTQYRISLLSNLHKLVGFAINMDDLSDHDLVHLMTRGSAFLSNSINTKLLQHVQSFIKETKRFE
>CR1-29_BF_pol#LINE/CR1-L2 3-1622 fragment [Branchiostoma floridae]
LPGRDDSPPTFLPPVSPETLLESLHVTVDEVRQQLLTLKVGKSCGPDDITPNLLRRVADPISAPLTKLFNMSLSRGQVPSMWKDANVTPIHKGGSRHVPNNYRPISLLNIIPKVLENLINKRLVEHIRPMLTQHQSGFRSKDNTTLQLLRLVDEWTKAMDRGEVVGVAFLDLRKAFDKVWHKGLLAKLEGYGIRGPVLEWFASYLTDRRQRVVVNGATSDWKTPLAGVPQGSVLGPTLFILYINDLPYRCTACAANLFADDTSVSTSHRSISIVTDSLNKDLATVSDWLLCWKLEANGDKCKVMYLTSRPLPRTIPPVILAGTTLQIVYSFKHLGVTMTHKLTWSLHVEATTNKARRTAGMLCSLRKKIPKTTLLQLYKTLTRPVLEYADIVWSGLTKRDEKLIESVQYRVARVISGHHGFPYPSYRTVYAHLGLPSLTFRRKFHTLTALFKLRNGHCPPHLCNLVPTTRSSAIQSRYPLRNGNNLSIPLPKSTRTQKTFFHRATQLWNNLTPETQTAPTISSFKAKAWLSLGDPFSVN
>CR1-33_BF_pol#LINE/CR1-L2 1-2124 fragment [Branchiostoma floridae]
VGDRIKTPEDSKLLWTVLNKVTGKGRTGIPALLSQGETLDKDIDKAELLNNIFVQITKESNHPDYTKRLPMFTNNELSSIQLSVEEVYNVLSDLRINKAPGPDCIPNRLLKEAAPVISSSLCELFNFSLATGRLPAEWKQSNISPVHKKGDKTDPYNYRPIALLPTVVKVLERLVHNRLYTYLMDNGLLNPKQSGFKKGDGTVLQLLRLLDDWAKSIDDPNVACTAAVFLDVRRAFDSVWHDGLIYKLSRYGVQGPLSNWFSDYLSGRKQRVIINGVGSSWGSTTAGVPQGSILGPLLFLIYLNDIQELPCKSSINCFADDTSLYNSGRTAFEVANTTNADLRLVSNWFHDWGLQLHPDKCKVMCIKALQSKVKLPPIYLAGELVEEVTCYTHLGLTLHFSLRWKEHAEVVSSKSKKVLGLLSKLQSKLPREAMETAYNTLVRTKLEYASILLSNIGTTASKSLEQVQYHAGRLVSGAMVRTPYAKLLDELEWDTLAARRDHNRLLIMYKLTSGSVPPHLQPLIPTTRNSQRQLNVRLRNDTHLHVPHSRTNTYKNSFVPYTTRLWNSLPKEVKEATSFNLFKRKCRNHMLSARHHQKYRRFGERRSNILATRLRLGWCQLNSTLAKFTITTRRCACGATSETVAHFLLHCSLYTAARQSLTTAVHRLVERPLSTTLLLNGSPGHDDNTNRSLSTAFHTYILSTRRF
>CR1-37_BF_pol#LINE/CR1-L2 1-2727 fragment [Branchiostoma floridae]
GLLLADIVDRYGLHQSQHEGTRLTQTCTSVLDLMILSDPARINHMYTLAPLGTSDHSVVVCKLNLILPSKCVKRHIWLYNRANFDVFRHELSKANWQSCKIGSVDTRWNSWKQKFLNIAKNTIPNKMANTNSRTHKPWVTPDILEMIRHKTLLYHEYKQSRTQDSWTDYTTYKNSLTYELRKAEREYYSTISDKFKTPEGSKLLWSVLSNLTGKGSRGIPTLSYRGVLVEKDGEKAELLNEIFVNITKDCNRPDRTKKLPILTSKQFTSLQVTSEEVLTVLQSLQVNKAPGPDGIPNRLLRETAPEICDSLRCLFNYSLATGLFPTEWKQSNVTPVHKKGDRTDPFNYRPISLLPTVAKVLERLVHNHLYTYLEENRLLHKNQSGFRKGDGTVLQLIRRVDDWAKSIEDPDISCTAAVFLDVKRAFDTVWHQGLTYKLTRYGVGGQLVRWFDSYLTGRQQRVVINGVASTWGTTTAGVPQGSILGPLLFLLYLNDMMSLPCKSSLNCFADDTSLYNSAKTVQEVAVTTNADLQLVSHWFSDWGLSLHPDKCKVVCIKSNRNNVQLPPIYLLGKIVEQVPFYSHLGATIHQSLRWTEHVQEATSKSRKLLGLLRKVSGKLGRQALETAYFALVRPKLEYASALLGDLASSASRMLEQVQYQAGLLVTGAMKGTPKSNLLQELEWDSLATRRQLNSLTIMYKMTNGLVPPHLQLLTPSTRGAQSTTRLQLRNNTHLHVPRCRTQTFKNSFIPFTSSLWNQLPQTVRDARSLADFKRVSKKHLFTTRHHQTYRRLGPRQSNIQAARLRMGWCQLNSTLHKMNIKSKQCVCGASSETVQHYLLHCPLYSEQRSKLTTTVECLVRQRPTVSLLLHGSPDHDPVINRQLSEALCVHDIYQKILFQPCHCLVNFS
>CR1-45_BF_pol#LINE/CR1-L2 3-3095  [Branchiostoma floridae]
ESWLGDSIESDDISLDGFQPPIRRDRNRHGGGVLIYISNTIPCKRRDDLEVISSECVWLELQIGIFKILFATYYRPPGQNISITNDFMDQFIDAVSTAHSERPDAIVVTGDFNSKHNEWWHLDPVNYAGAKLRQATQIVNLQQIITEPTCDLSQSPSLIDLIFTDSPEFFTKTSVLSPLSNCHHSPIIGYMSFLVSVPKPYSRTFWDFSNIDNDSLTFFLSDPKWFDIYGCGTVDEATSKLVQLILEAKYSCIPHKTITIKPNDKPWMSSNIRKLMHLRDKFHKKAKKSNFSADWIAYRNIRNKLTNKISKAKFDYESRLAQSLSNPSTAPKKWWHIVKKFYKRNSFSTIPPLLNGLVSIVDSYEKACIFNDFFASQSTIDTSNAALPDLTFLTSEKSTYISTTSDEVEMLIGCLESSKAHGYDDIDNRFLKLIAPFISDKLAYVFNLSLSHGIFPNVWKKANVIPIFKKGDSRDKTNYRPVSLLPSLSKILEKIVYKHVYNHLISNDLLYTFQSGFMKNDSTTCQLVYICNLILEALDKGKEVRAVFLDFSRAFDKVWHTGLIFKLQQYGIEGPLLNWFSSYLSERLQRVVLDGQASPWREIGAGVPQGSVLGPLLFIIYINDIVNELDSLPFLFADDSSLLEIVENPYTSAHRLNSDLSKILAWSNTWLMDLNPSKTEEMCFTTKKSPQYHPPLFLGTTEIVSVSSHKHIGTILTSDMSWNNHLNNICSNVSKRVNVFKCLKFKLPRHVLQTIYKSFIRPSLEYADVVWHGCSGEKSSLLERIQYQCSIVVSGAIKGSSYSNVCEELGWESLSSRRHNHRLLLFYKIVNGLTRNYLLELLPREITQTTSYNLRNKFNFRLSRYSTNRLIKSFVPYCVSHWNELDSSVRCLRYPMFRSYLTKLVRPNSPLHFSSGPRYTCALLARFRIGTYGLNHSLFKRGLVPSPSCVCGCQSETIYHYLFDCPLFDKHRTVLLNNISNLTDHLFDFDTISDNLKLSIVLRGSPTFNAEINSKLMLFTQKFIDLTQRF
>CR1-46_BF_pol#LINE/CR1-L2 125-3391  [Branchiostoma floridae]
MIILAGDIHPNPGPPFRKEINFMHINVNSLVAGSKIDELSAIVIRFKLDVVAISESWLGDSVNSSDILLNGFQAPIRRDRNRHGGGVLIYVSDKIAYKRRLDLEPSPVECIWLELSTGCSRIIFSVYYRPPGQDSSTANEFIDLFIDSVYAARSSNYDAMIITGDFNAKHNAWWAPDPITPVGMKLFQASTMLNLTQVISEPTCDLSRSPSLIDLLFTDVGQLVKQTIVLSPLSACHHCPIITTFNLSLKCPKPYTRTVWDYSKIDLNLLEDFSFDPKWNDIFYCNNVDDACDKLVELIFEAKSKCVPHKVIVVRPRDKPWMSPRIRSLMRQRDKLHRKAKVSNSPTLWSLYRNVRNKLVREISLSKSNYYNRLVDSLTSSPCSSKKWWHIVKMFFCSKASSTIPPLKSGHSYVTDSCEKARMFNDFFSAQASVDDTKASLPQIDYLTDVRLSECFTTPAEVELYASSLDISKACGYDNVDNRFLKLICPLISDKIAYVFNISLCHGVFPEAWKRANVVPIFKKGDPDDVSNYRPVSLLPSLSKILEKIVFKHLYNHLMSQNLLYSLQSGFIRGDSTVNQLICITDKIFDALDSNREVRAVYLDFSRAFDKVWHKGLIFKLQRNGVDGSILNWFYSYLSSREQRVVIDGQCSDWCYVGAGVPQGSVLGPLLFLVYINDMVDGLVTCPFLFADDSSLLDIVENPNSTAIRLNSDLMKISSWSARWLMELNPLKTEEMLFSKKLNPPYHPPLFLNNCVIKSVKSHKHIGSFLTTTMSWEMQISNMISKTSKRVSALNKLKFRLPRTVLDTIYKSFIRPLLEYADIIWHGCTLCDSQRLERVQYECALTVSGAVRGSSYSSLLAELGWERLSDRRHVHSLVMFYKIVNGHTRQYLKDLIPPVVSVFTSHNLRNKHNLRVPICTTSRYQKSFIPYATQHWNGLDTAVRSLSFSLYKKHLMKLVRPSINKHFSYGPRYTCALLTRLRIGTCSLNQSLFIRNLASSPACNCGCRCEGVVHFLLYCPTYQQYRTIFFDNLQNLLGNSLDFNSLSESARIHLLLRGSTFLSYHTNCSILKLTQLYIVHTKRFATTL
>CR1-51_BF_pol#LINE/CR1-L2 2-1240 fragment [Branchiostoma floridae]
YINDIVNDLVSQPYLFADDSSLLEIVKNPFDSAAILNSDLSKIHSWACQWLMELNPQKTEEMCISVKRHPIVHPPLYLDNCVIQSVITHKHIGVILSSNMSWDAHVNHIVSKVSKSVDLFSGLKFRLPRNVLETLYKSYIRPCLEYADVIWHGTTSEQSNLIERIQYHCSIVVTGAIRGSSYLSCRQELGWETLSDRRHVHRLCLFFKIVNGLTRDYLVEFVPPAISSECTYDLRNKLNLRSTNLSTNRSLKSFYPYCISHWNNLDPSTRSLNFCQFKTFIFKQFRPAKCKYLSHGPRYPCLLLTRLRIGTCSLNSSLLSRGLRNSPACSCGCRSETVAHYLLHCPNYNNQRLLLLGKLSRLLGQSFNLFTHSENMHISLLLNGSPSFSYSLNSKILILTQNFITISKRFIS
>CR1-52_BF_pol#LINE/CR1-L2 60-1541 fragment [Branchiostoma floridae]
GPDSIPARVLKHAATELSKPLAKLFQLLLDKHYMPKQWKVAHVIPVHKKNNKHDPSNYRPISLLSIISKVMESIINKALWKHISENHLISDKQFGFRAGHSTADALTYVIQHLHDAKDKRQESRLICLDISRAFDRVWHKGLIAKLKAIGVDGKVLNWIENYLADRELKAIISGKTSTARVINAGVPQGSILGPLLFIIYINDLTEKLENTSMLYADDSSIMSIIKERRERARAAQSLNSDLEEIQNWANSWNVIFGATKCKCMTISNLKDAVGNHPELSFMDTTLAEVDEVDLLGATIRKDLTWNHHIKKMAADAGKRLGLLRRAAPYLNPQQRAIIYKSMVRSSMEYASTVWMGACSTSLDLLNAIQRRATKIIDLPETDLYKYQIQPLEQRRNVGALTLLHRMYNHDAPAPLNSLLPEPYTHRRETRLSTSQHCNALEPVKSATTSHRRTFLPATTKLWNLLPQHIVTLRDKQKFKTSINNHFSDLRQRP
>CR1-53_BF_gag#LINE/CR1-L2 146-919  [Branchiostoma floridae]
MPGRKQSKRKRRPTSGDSVAHDSEDSSMATQVSLSSIAAHLSEFASKTSASFDKLNASIYHLGEDMKSLRQEVVSLQQSVSFAHDEIDALKQETSTKNSGLEQRVIALEEKLLLSELYSKKQNLLLWGVQAEEEEDVVEKTYKFMEDNLKMTNVKSIAFVNVHRLPKMRGNPIIAKFVSMADRDLVLRHAYRLQPKSGIGVSVHLPVPIQKAKERLKPAFYDARSKGLKPKFKLVGATMHLCVAGGKKFKTPEDYFN
>CR1-53_BF_pol#LINE/CR1-L2 1156-4566  [Branchiostoma floridae]
MPISTEQHMAVIGMFEADRHFAVLKRCKTCIHFDIFLLFFPLPVLVVLSLIAGDIHPNPGPSTMYTSFKYLNILHANVNSLVAGSKLDELSSLAIQHKLDVIAISESWLGDTIDTSNIVLDGFQSPIRRDRNRHGGGVVVYVSDQIAFNRRTDLETATVECIWLELCTGKFRILFAVYYRPPAQDLYTINEFVDSFSDSVFSAGGTPHDALIITGDFNAKHQAWWPRDPITTAGLKLFQASQMLNLTQVIKEPTCDLSLSASLIDLLFTDTSGIVLSTSVLSPLSGCHHSPIVATFKLSLQLPRPYTRSVWDYSRIDFTKLTTFVSDPKWNDIYHCNSVNEAGSKLTDLIYEAKNICVPHKTIKIRPRDKPWMLPRLRRLMRQRDKLHKRAKLSNNPVHWASYRRIRNKLVGDIASAKSDYHNRLVQSLSEPNTASKKWWHIIKYFYRCNSISTIPPLNLGNTFTTDSKEKASLFNEYFAAQSSVDDSNAVLPELDYLTDARLYECVTSAEEVELYISLLDVSKAHGFDSVDNRFLKLIGPFISDKIAFVFNLSLCHGTFPQNWKCANVVPIFKKGDPQQVSNYRPVSLLPSLSKILEKIVYKHLYNHLLSQSLLSSFQSGFIRGDSTVCQLVCITHKILEALDANKEVRAVYLDFSRAFDKVWHDGLIFKLRRNGVEGPLLNWFQSYLHGRIQRVVVDGQCSGWLSVCAGVPQGSVLGPLLFLIYINDMLDDLLTQPFLFADDSSLIDIVENPILTSIRLNSDLQRILSWSNKWLMELNPSKTEEICISKKKVPPIHPPLFLGNSVIQTVKHHKHIGVILTSNMSWSTHIIQMVAKVFKKVSIIKNLKFKLPRNILENIYKTFIRPSLEYADVVWHSCSDSDSRLIERLQYECSLTVSGAVRGSSYSSVLQELGWEKLSERRYVHSLLLFYKIVNGQARQYLTDLLPPAVSEATSYNLRNKSNIQMPVCTTNRFLRSFVPYSIQKWNCLDLSIRSLSPHLFKKYLIKSVRPVVPTYFSSGPRYPCVLLTRLRVGTHSLNHSLSVRNLVDNPSCTCGCRCESISHFLLHCPNYINQRLLLFDRIKNLNISTLNTDAMSETAVINLLIRGSPLLSSTDNANVLYIAQMYLLETKRFV
>CR1-54_BF_pol#LINE/CR1-L2 1-1944 fragment [Branchiostoma floridae]
NATLPDFNSLTDARLSCVFTTPEEVELYIRSLDTSKANGYDNIDNYFLKLITPLISDKVAYVFNLSLSYGIFPMIWKRANVVPIFKKGDPHDKCNYRPVSLLPNLSKVLEKIVYKHIYNHLFSNDLIYSLQSGFVHGDSTVCQLVYICHTILKAFEEGKEVRSVFLDFSRAFDKVWHSGLIFKLQQYGIDGPLLNWIYSYLCERSQRVVIDGQSSPWSKIGAGVPQGSVLGPLLFIIYINDIVNNLSSLPFLFADDSSLLEVVEDPTTSAYRLNSDLSTILSWSHKWLMELNPLKTEEMVFSAKRSPVNHPPLYLGTSEIKRVLFHKHIGVVLTSNLSWHNHIIQMLAKISKQVNVFRGLKFKLTRKVLETIYKSFIRPCLEYADAVWDGCTAEDSNLIERIQYVCSLIVSGAVKGSSYISVCQELGWESLSSRRHIHRLSLFYKIVHGQTRRYLIDLIPPEISQTTSYNLRNRSNFRLSIQSTDRFGKSFVPHCLNLWNDLDLVIRSSRYSLFRKYLIKSVRPIRPPHYDCGPRYTCALLVRLRIGTCALNQSLFIRGLSPSASCRCGFRCESVLHFMLYCPLYIHQRSEFFGNLADLLGHRVNLNNMSDNVKLHFILRGSALLPSVYNFKTMLLTQTYIEDTKRF
>CR1-55_BF_pol#LINE/CR1-L2 1-558 fragment [Branchiostoma floridae]
STEMYADDTSLYKAAKSVSAIVAALQPDLIELSNWVSVNRLVMNVLKTKCMLFGTARKLALLPDKSLNLVIGSEKVEQVIEAVLLGLHMDPSLTWNLHTKYLVTKLSGNLAYVRRYACYIPDDVCKLVLQALVLSVVQYCSPLLASMSDSNMRKLQIVQNRACRLLLKCTSDTSVRRMHLELGWP
>CR1-46_HM_gag#LINE/CR1? 45-1417 via tfasty with CR1-43_HM_gag, 2 frameshifts and 5 stopcodons  [Hydra magnipapillata]
MAPREISELFLFLNSNKNLVENYVSNVEEICSHPKDVIINEFSKLQEEDIFSLRSFLFTEILESFELEQFSSLNISLDADDPLKKNLRKRYKVSTCLDDIYLLSISLAEKQLHKEFTKLINNSKIVSEKITTNVTDINILSNLKELNDRLKTLQSDNVKIREDLRILQGKYDELQESNSEIIKNQQQLSLNYATNSSFIQKPIENSIVTNSINFRSLTQNHTQRKTNPSFTVEDKLKKNxKQVKLMHKKLKYHPKWQTIIPxYQHPHxYNSLQKNxTxKYDRDCLEERKNYYLKPGVSTSKKEPIFGNKIAKNRNSIAGSRIVRESYIFVGGVCNSISEALLFNYIKKEIGVEPIAVTLNRENKYNRSFKVTIKSHEKHIVLKPEVWDHNIIVKQFRKSRENLGTEMMLQNNNNIPSISQSVTKSQSEDEHQSDVVNQSDVEHQLYAARAMSLNQKS
>CRE1_pol#LINE/CRE 221-3284 via tfasty with SLACS_pol, 4 frameshifts. [Crithidia fasciculata]
TAFGLVGPLPTFSSLVSGSIPVGHETLFLSKLHIYIHNNHSHNCSGAGPFRTILTFGAPNSHILTKNGRATRGDGPSVAEHLKRRRVEGSEPVVVGSRQEGLSGESAVEAIVVESGSEADEESTARGLGASRQAPGDDSGGPVPRAEEDLAPVGYLYPENLAVPQGAACPVVGCGYRPNTRVGPRLVEHLNTVHRDILGNIPVDAWRRQGLVRCLRCGSALTASGHGRGAHGGKCGPYRSRNAAIRARTQSFFGGISQNSDTLTAGNGVSEAGGLVEVGRVEDPTTDPWYRVRTPLKRQIYRTDFRVWQGLARPVLLGYSLADTAGKEGRLLALLNLPRDHLEVQVNAKRGIQPQPAEIEAQVRRKVVELAGIGAVGRAMAVMTRGRLVEVPLERVMEQLEELHPQEDPRGYPAAPDTSEVLRAKEQKVRRAIAARMGRGTAPGLDGWTRELLLPLAEDPALLHEITSVVSDIMQGKVAEVVARRLRSSAVTPIPKDEAGTKIRPIVPESAWLKLASLVAMAEIPSSFKETFKGWQYGVWGDVAKAVAKIRRDSEEHEYLVALDGVNAYNTMSRAHILQAVYAEQRLKPIWGVVKVALGGPGFLGVYRDGCLKGNLWSTKGIRQGMVLGPLLYATGMAAAIGPVRQRIPGVPVTAYIDDITLAASGAEGARAAEAYADALETVGVVTNARKSMVVGPEGTRVGIGGVDLPVVAEARILGAHFRARGTPEARTIEWLQAAVEKWRPIHQKLRQDIIPKNIAMMMTRISLGSKMTFLLQTHSPQELETAAKTADDEVEQTLQHLMGQVEITPRARLLAQLPIREGGLGLRRSSEIAKFAQADVGQGEAHQAHTKALDEGIKHQLQPLLSESEVQILKSNAGMGAGRVLTDSSLRIPDVAATIALRERLLLRVLPEGVQCVCGGDATNYHVHTCSNIPTKPRTRRHDGVVDELVALARKMGYEPSKEPRADVASRARPDLYITGSLKPAATDVTITYPGRQAMGSTLPLQQAYRNKMGAWEAWGNLRGVDMQPVVLGTNAEIHPESREWIRRLTSVEDKDKIHTSYNEVTGRIVETVLVGNVELFNAVTNLALVRELM
>CRE2_pol#LINE/CRE crithidia gi|1362544|pir||S58380 probable RNA-directed DNA polymerase (EC 2.7.7.49) - Crithidia fasciculata retrotransposon CRE2 [Crithidia fasciculata]
MAKMMKYLKEKMCLSGAGSNSQGKEKTSLRVRCGLPPVYPRVADGRTEEGEFVFGGKKQPAATTPPLPPLTTQPQGFQVTAELVEQVLRILQTGGIPVPTPPHTGTTTPATHQSEAPPQTGLATTRDTRATDRKQTPQRGPQEPKREVPTPRLVAPQPSVPPGFRLVPARASTPPRWQREATAQAATTTGAANRVSTPQQRTPTTSRSATPQPNIASPSGAPPRYNATRLSPVTPLLVPVPPRDGRTYAQATRSTTPILYNAQHGTTTSATRQATPSLWAARASTATPHRAPSPTVRLPTRTVPPAILTEEQRKADPEFHQVRTQNQRHRRMLEALVASMKDSEATAAHYETSYMYAKVLAEHAEMGREGLRRHFSLLADNYPKAHPVDRPYWYCQGQTPEGRPCTYAHEHEAVMRSHIAKRHEGQRVEMRQHVLSSYSGGAHNGRSTCAATTAAAMWSTRPDARRDTATWAAFKKSTPAATKAMLQDLRLAVPTTARRALEAVVAREADTTQDDQETHQKLILVSGRVNRAVGAADVTTQLAKMVTEKHDESAYEDVTEVAFNILAPAGATGIEGMPHVPEKIELPSASTKQTIELNLHAVASATEPTHLTAAVREVQKRRGIEITTWHRYDGAVHTTSPTAPPSNSVVMLLYTRAQTTQDEQKQLTLKGADGDKDDDTYSFLSDDSDTEDRVPEDIDDRTSTSFTQELSPQTTAEDGEHVFGGHVDPAVLGDWSEEDDSLEQETADRACRGSAAAKTERHRSMTKFLERLAQHESMTHSPTSPGDVIRAVIEEDEASSALFACGIETARTCRSCGYQVDAEVLDDIAVVTVTNTGLRQDNLSTQQLDDAINQHTIYTPEECARCGRETASATHRLVQWAVAVVLPEKEDTTQTTEERHLPRTVMATNGNGSQCTLHLVAMANIHAHRTAEVWEMVARHSDGNEQWRRRGHTDEEDQQTETERRGNVLLYTRDAPTVLAVFTTAARSTSAVEESTALTNVTTPQPAATPEHRQETRATQDAQQTQRETPTPQRSLEGILEEVTGVRPRSAVSNIEAVRRMLCSIASGKMRARGGISINQAFATLANVTQEWRTAFADNGWERRGCAACGAREGQKLFDSQLSIVDVAIRMKEEISTTDLTAALGIRKTQTSDACPVCDAHMQSTIQHVPGKAVMFSIEEATATGNQITTRVAPPTFTHKAPNGAEVTRSLLAVIDTTTGPEAQVHRVTANWGTAAQRWCKVLPEGGEQETKPTVPPKGNLLCYLSHKPRVTQTAQRTEDDDHRDTNNEEISSSSHQAPKKRERPASSTTTPPSMKPSNCSEVKIDTTPGRQRQPHNREEEQTRETARAPTYPTDNAANENASARKREEQRGPLGGATSTSPVVINSSADFSMVEDTAATPIQRTMSFTLDPLSPEDEDAVAPDPFLASIVQVVGEEDEGTAEAPSMNNGENSEPAETPTRSLFEAEDVPLPASIIDVDDGAEEDAPHAQNNGQQVRNAATSPQRDRVTPPPDARHCPLCPHTPKNQSTPKPQRFQQLCSHMNIKHHVAEVAEAVLEAAGLERCSRCRQFLRRTQRARESHRCEPQAGEPTRDEEGGETQHGAPRATATVRDFRHDSPTADDTEWLEKTSSTVRHLHKKEWGHWLVTVGTVLTGYTASVEEERWKRQLAMTTVVRDNLGRQRRGDGETSQAQPQRSEANTAPQGRGEETTATQPHRAITEENWGQDRAAEEEGQLPQQHKGMTAEAEREEQNRKRILNQLSLGALGKAARSLFNTQLPRATIEEARPQLEALHPQASVSDLPLPSETPFLHAVKPERVRAVITKQLGRAAAPGLDGWTRELLVPITEDKGLLTELTALVQDMLVGNVHPSFATRIRACILHPFRKEAGSAKVRPITPESALMKLAAHIALDSVEKSFRSTFKGWQYGVWGDSTEAVKRIREAYAEASSDTLVALDATNAYNRMSRRHILEAAYAQPELRFAFGVVNLSLGAAGELALYENGAKIHALKSTEGVRQGMVLSPLLFANAMSGIIRPLMEMHPRVKVVAYLDDVTLIGPHAAVQDFLAEAGPQLSRVGFDINPAKSHHLAKLEVPEALSVSGRTIPIAQGVVRILGAGFRGDTASVEEWVWEKTKTHDHYFEKLQSEWLPRLARLQLLRGSTVPRLNHLLRTHKPEELNRSTTWFDERVMETALNIANIGDRRNADDGDPGHTPPDPLRETRLLVRLPMAMGGLGLRSQKPIAGFAAECVGTKNAQRERTAVVDVEIEKSLHSLLSEPALLLLDANTATGATRALVDPAVKMSDRAAEVMLKQRLFQRVLPVGWQCVCGEDATNEHINRCRQAEGGARIARHNKVRDTVIGWATEIGYVARAEPPTQNQLATTIENSHRRRLDVEITTPNGTFTTDVTVTYPGRTGLGTHAVQEAHTNKLAKHGDDARAQDKIFAPLALESTGGIHKDGFQWMRRLAGVKPHPYTPNTALSMLLTKVAQALHEGNAYMFHVADQAHKHRQLGRSVGEVQE
>CZAR_gag#LINE/CRE gi|162248|gb|AAA30238.1| gag protein [Trypanosoma cruzi]
MTRSAAASRTPFIHRDSVDPSQLQDIITAATTEAIKRLTSPTNGRYTDNNGNRSWRSRSGRPNRRDAELLWRSQPPQGGPQMMQGGNRSWQYRDQQPRRYRSQSSLERHNTSHRRREGLNRRFVRGPRGSDEGPHTNSGDHSQAPQPHPPGKKGGRAGVATRRFSGTTNQTKKPASCNSSASGARAAAYQEKHQRYIGATKTLVPWWTALYQSGAQNYHCPLCSFNRPGEHDVFYHCRQAHPTYDKCYPYRLHLNGHCTFPVEKSCSLNAVLAVLSHYEDESQLSQEVRSTYTVPCRENTERIIRAMDVNLRWHRYRLWSSSLKTIRSYGVCFPQRRWPESTARHAGGPCQWRMRIRPTRKHCRTNPPSSPCSRERRHPYNSHRSC
>CZAR_pol#LINE/CRE gi|162249|gb|AAA30239.1| reverse transcriptase endonuclease [Trypanosoma cruzi]
MAHDSHQITEIRRRGGTGVRPLGQASDGGGGHPICDPPTASKRHGGKRTGGLVATNAPNHVVAYIPSALRKDTEWVMIDGMVQKVQRKPLNTHKVILCLYRRLMPETGPEEDEEDDEQEPQARNREQDGRTLATAPKGSRRPQSQKWEEAPDDSSMVDGFGKNGYGQPPGSATHSSPPASSSPSTQTITQDPFLTPIAPRKRGRRGEDQEEESEADGNKGGGIVCEEDEEGLLQPSVPPTSSQPNQQAPQVHFLDEEEEEITLRRTQPQETPHTNKDDTPPHQQSSLPQEEVEMEEEGVGGDEGDSETPRDTTGQEDGGHPFSHDKTTRLLDPVWCLAGGCHHKFSGPRRGEHLRSHIHAVHRKQERMDITNEALISQGLVRCDACGEVCSASLRARAAHRPRCGQYTCRKENMATQREEYRASVTGSHYTKTAAFLERTPAVEWPTTPATDPRQDPWLQERVPTRRYLHKREWPNWLDVCRTVMLGYNASAPEERSRKQVAIMDLVRQHLRLPENPRSRRQATRTNHDKQHTTDPPPDHCNTTTVVRGAMETTKDGEESVSDETEQQDTTAHQPERILTASDIYKTRRVETLCTLQATGRAALLTAAEAEPVVFSPELVQSLDDLYPQEDTSLYPEPAVSAPLVTFDSKELAKIIGSRLTRGAAPGLDGWTRELLYPLTKDKALLMEITAILTDMANGNVAPEVAHRLRATNLTVLRKPNKKFPPIGAECVWAKAISLMAVDAVMPALKTCFKNLQYGVGNNIELAIQKIRRDFHLKGSVAMLDGRNAYNAISRTAILSAVYGNTAWSPLWRVTRLLLGTEGLVGFYEKGQLVHSWKSTRGVRQGMVLGPVLFSIGTIATLRQLESSFSNASFTAYLDDVTVAAPPGMLGKVCEATSRAMRALGIETNEDKTEVLNKGGPVDMPTEYIRPFARVLGAGVANDPESELITQFVQRKAEETDRLFRAIVELPFAKHTQVRLLSVSALPRVTFLLRTHAPAHTRAAASGSTTASPASWASSWTAPSRSAHAHCGHPGAPGGCGLRRQREIAEFAYACLGEKGKQRAMTDELDAKHQSDLYETLQGPDRKVFVSNTAAGAGRPLTDPQVHADDRGFSTYLRERLLMRVLPEGQKCVCGADASNEHVHTCTRLQQNPRTTRHDMINMTFANGLRLCGFQCGMEPRLTEASRRRPDILIVGLDTYAITDVTVTYAGRVTAYVSEESMEEADPLRAARDRLTQKRQKYRHWALANGLDFEPFVMLTNGAIHPASRRWLRRILGNQDHRLTITNAYDMIVADTLAAMLRGNVHVFNAACAARAG
>SLACS_TB_gag#LINE/CRE trypanosoma (ORF starts 112 AA earlier) [Trypanosoma brucei]
MVRNLRSSEPQKISRFPRHHGEGKKASSPALNLQWPGQKQVASAVAPEMRKRAPPKNNNTSIHRNCRKHLRKEGDWWIVEGGQNHKKAAHSPLKTKPVNKEGNRKKYGRPPREVEGKWLTSLIAATTEAVLRQLGKGKSPTAHTKSNQSRVPLQHSEKTAKGIKYATPQPKKKAHEQRKELPHWPPTKRSHGANKGQGAPVRAPAKTQGKGEEQPHTMRTWAQVAAPKKQKVTSKPPMAQKKKAQGEKKGAAANPFHWELQVEQLLKDAEQIRESMYIRFLHVRQSWWSTCFKAHMEFHCPVCGFAHPEETITVTHCRQQHPGGPPDSLHPDNNRESGAVSQVPPAHFRRWWLSSHIWRKRKISTLLSPKLPVPEQGDYPNARSGIGTGAPHSPHHCDRSAGPP
>SLACS_TB_pol#LINE/CRE trypanosoma [Trypanosoma brucei]
MEGPSNPGENLGIISVNPNTCESIELTNQILAKTYTTSWTDMEVYARGNGRICTAYPDVDHPLQDVRGNVSSILERGERSGGFETHPPRDPVTPRERHGNIQTRGAVIAPTPFHVVAAIPQQTRKRRWDILDGMVRRTVSQSTVDPKTVVMCVYRREEEETYDVLDEEEQDDDLLGIPNPTPRRLRISQAGPQQNSWVDTRGRRAYGSQEEQDERTSTDQVSIFSHDETRELSSPLECPIVGCTASFVGPRRWEKAKSHIYGVHSLEEVREIPRGELICKGIVRCETCATLLPTSDRAKQAHRDDCRPYLPRKENIRRKRAAEREATEASAQQGIALRLERQGPYITPRDIEEPTNTTTESWWREKVATKRYLHRKEWPQWLDICRTVLLGYSASSQGERHQRQVMLLDLVRNHLHTRTARREQQQQRGKDNQEEEDRQKKEEKSLRNAWKPCASSVRQGGQPSSSQPKRLNRWSTAPKWLKQSGNCTRRRISMIFPGPPVEQPGVVSVDAEEVAKTIARRLTRGAAPGLDGWTRELLYPLTLDPALKMEIAAVVKDIINADVSMEVGRRLQATSLTVLRKPNGKYRPIGAESVWAKLASHIAISRVMKTAEKKFSGIQFGVGGHIEEAIAKIRKDFATKGSLAMLDGRNAYNAISRRAILEAVYGDSTWSPLWRLVSLLLGTTGEVGFYENGKLCHTWESTRGVRQGMVLGPLLFSIGTLATLRRLQQTFPEAQFTAYLDDVTVAAPPEELKNVCAATAEAMEALGIVNNADKTEVLELTGDTGFGTAVKRVREFLERTWPDPMSEEIREGVEKKAMETDRLFKAIVELPLYNRTRWRILAMSAMPRITFLLRNHDMQHTHRVASWFDERTTQVMEHILGQPMTERARNIAALPVSMGGCGIRRMAQVAEYAHQCAGEKGLQQRKTEEADQRQQDDLYATLGGADRQVFTANTAAGAGRPLTDAQVRLDDATFGVYLRERYCRVLPEGVKCLCGEDASNHHIHTGTKVHNKPRQMRHDIINSVFANGLRLCGFQCATEPRLNEVSKRRPDILIAGLDTYAVTDITVTYPGRVTVGNTAQGQRSVAAADPMKAALVAFQEKERKYSYWAIQNGLAFAPFVMLTNGAIFGKSRDWLRRVLRGQDHRLTVTTAFDGITADVVAAVLRGNVHVYSAAQARGETLR
>57226582_Cne_pol#LINE/CRE-Cnl1 gi|57226582|gb|AAW43042.1| hypothetical protein CND00010 [Cryptococcus neoformans var. neoformans JEC21]
MAENGFKMLGTMVGPKKAREEFLKSKMESEVKKIARLKDLPNQHALLLLRFCIQQNLRHLQRSLKSDDLKDYWEKMDQELWDEVQRMRTRQTEGTEAENALGKKLSHLPARFGGLGLLSFTDVAPLAYKAAAAQADKHLANIFGLDLPDEAPTPSQRELCSSMWEHQQTTILEGLNDPARKRLIENASKIGKRWLNVIPYFQPLRLSNQEVATGLHDRTLVGSSIAICSFCGSDSPLGHDELCRSRNSWAQRRHDSINRIIHRGLQSVEGAVVSLEPRTLEGQRRNDLRVRGRCGLHATDYDLKVYCLNDRDARSTLSAKLPSTPVATHVLNRCLSWLDKVSEIATKKAPATHAGVFKAVVMSTGGLMSRETADEMRKWRREMGHMAFEGMMRKMSLELVRARARTFAM
>58267822_Cne_pol#LINE/CRE-Cnl1 gi|58267822|ref|XP_571067.1| hypothetical protein CND05380 [Cryptococcus neoformans var. neoformans JEC21]
MPGKSIGEPGENFGVFPEFFYGDCFPWRARRQFLRLEPVQEVGPEQEAEPEQEVEPEQEKENVESGGNLATAPVVQMNQEVDSTVSAPLGPCPRKSIPFTLPDQGNTADRFRYLATIPNRKKPIPGRLHPAFQDAAARCAEAYLTRPTEANLLNFLALPKVGLFPATLEKKPALFLASYPNVSWPTPKPKPQNPTTASDTSKTATKLVESGHLGSAARILAEDAKAMEIDDRVLEQLESKHPRGPEKPFGRKAGPKQGKNITEQSMREALDTFAADTAPGVSGWTVPLLKSAMHRPSVVKFLTTLCTSITSSTALGQSMLRTSRLIALKKDDGSVRPIAVGELIYRLCAKAILRSYFHTDFLLPYQLGVKSPGGVEPIVRAAERALEGSLGAEYTHLASLDATNAFNRVDRKVMADAVEKHAPVLWRTCKWAYGEPSDLICGDTILQSSQGVRQGDPFGPLFFSIALRPTLHALSIALGPDTQAVAYLDDIYLFSNDPNVMQRTQAFLADKENVIKLNNNKCKQVTFTEMAENGFKMLGTMVGPKKAREEFLKDKMESEARKIARLKDLPSQHALLLLRFCIQQNLRHLQRSLRTDDLKEYWEKMDQELWDEVQRMRTRQTEGSEAENMLGKKLSHLPARFGGLGLLSFTDVAPLANKAAAAQADKYLANIFALDLPDEAPTPSQRELCSSMWEHQQTAILEGLNDPGRKRLIENASGIGKRWLNVVPYFQPLRLSNQEVATGLHDRTLVGSSLAICSFCGSDSPLGHDELCRSRNSWAQRRHDSINRIIHRGLQSVEGAVVSIEPRTLEGQRRNDLRVRGRCGLHATDYDLKVYCLNDRDARSTTSAKPAASSLTNHVLNRCLSWLDKVSENATRKAPATHSGLFKAVVMSTGGIVSRETADEMRRWRREMGPMAFEGMMKKISLELVRARARTFAM
>Cnl1_pol#LINE/CRE-Cnl1  From retrobase; includes  gi|58262638|ref|XP_568729.1| retrotransposable element slacs 132 kda protein (orf2), putative [Cryptococcus neoformans var. neoformans JEC21]
MSLQRAKNARGDPGRCNLCSADYRDLKDHLNKQHSTHFFVPSDLRGSSLVACPRCGTPCSAGTGLSRHQSRYCGLTAPRIRRNRVGNSTNTSRCPPSNTAASPIVPSPSPERPSPPQPAEVVASLEPLSEAEEVLEVAQVDAETVDTLEGTRRAPESVPRSAEEGSTRVRELNMTAPEEEHRGEEESSHTNPTAPAGLENAVSSTLGPSPGTLPSLLPSQECANERFLYLAHLPVRSKPLPNNLVTDFMDAAERCALAYIAQPSDSTLLAFLALPKVGLTQALAPEQPLRPSTFLKQFPHIPWPEQPPARRPPSNIRPDTTKQVIKLVENGRLGAAERVLEEDASVAELDQGVIDQLITKHPKGPSCPFGNAVGPTPGKAPDIDTIQKALDSFKPDTAPGVSGWSVPLLKTAAKREPVKQFLQLLCAAIANNTAPGRSMLRTSRLIPLKKDDGSIRPIAVGELIYRLCAKALIISHFQPDFLLPFQLGVKSIGGVEPIVRLTERVLEGSAGAEFSFLASLDASNAFNRVDRAEMAAAVKTHAPTLWRTCKWAYGDSSDLVCGDKILQSSQGVRQGDPFGPLFFSITLRPTLNALSQSLGPSTQALAYLDDIYLFSNDSQVLSKTTQFLADKQHIIKLNEKKCKLISFDEIRQEGFKMLGTMVGGKEKRAEFLEGRIRKEMAKVGKLKDLPHQHALLLLRFCIQQNLRHLQRSLRSDDLVDLWERLDTMLWEEVKRMRMRQREDTAEEEALGRSLTKLPARLGGLGLLSFKDVAPLAYRSAAEASDTLLDNLGLLSSPEEPPTPIPQRTRCAELWESQQEAILHNLGDTERKRLTENASRLGRSWLSVIPYLQPLRLSNVEIASGLHDRTLVGSSIPVCRFCGSDSPLGHDELCRARNPWTQRRHNAINRVIYQHLKQIQGATVEIEPHTLSGQRRNDLRVRGSSALAFTDYDLKVYSLGDRDARSTVTPCAPNGKLADFCLDRCVNWLDKVGQVVSKNAPKVTGGVFKPIILSTGGLMSRSTADEWKDWRDAMPVGGFEKMEKRIGVELVKARARTLVL
>60474046_Ddi_pol#LINE/DRE gi|60474046|gb|EAL71983.1| hypothetical protein DDB0190137 [Dictyostelium discoideum]
MFNYERIDHGNGKGTGVSIENRNLSTGYLTVNFKDTEGRILSVKFNSYININILLIYAPASIPRRNAFIIAAKNLIKDQKIKHDIIAGDFNADHNNNSHYGIGIRSIIEESNLKDIGANNNIATFSRSNSRLDRIYCKPTMVGSNPLRVHEDIYNKSDHTPISIDLKMNNNSANDININNIKIEKLPWTLCKETLADPTIHEEISQIIENNKQYINTLDDWIHFKNYTIRHHLKKQQNLIKKEKNKKKSRLHRLIEREDLYPGQRKQLEDEMEELLKEEEANKQWETKLKLHLNQETPSRYLTSKLKKRKKDRSIFQIKNKDGTIVSEKVEIAKCFLEFYQEQYDEKPDNESKHKELLDKWIVDKQYISRLSLDSAITPKEVNNAIKNSNPHKSPGLDGINAALYRNHSASLSTILAKVFNDTLTNQKEINPNFKEGFITTLFKKGDELQIANRRPITLLNTDYKLLSKIINNRLLAVTKKIINKFQNGFVPNRYIQDNIQIMKEVIERANKSRNSTTLITFFDFNKAFDSISHKSIRRTLSHIGIPKTIVELIMNLLKETTNKIKINDFLVGHITVNRGTKQGDPLSPTIFALVMEALLIDILKEIEIKGFKLSDQKRIKLTAFADDMSTFNNSAEELKLVLDKINNYCLGTSSKLNQEKTVMICIGNIPPNLPFKISEAPERYLGLNFTKVGLNSKITSIINSIKDSLNNWKSQATTIRAKMTIVKTYALSRLSYHQYLDSLNESHITELNNIIKWFLFSAIKNTYTEEHKYRTLMTMDRAYGDWKEGGIKMWDLGIRQVAFKVWNMNRLLHIIKIKACNILQEWYMEQISNSKYISIGLREMVDRWKDFRNNFAPQHNKLKSLPDCIKGQNKKPLQLKEIYNMLITHKYKSIRKTDGQKNLISINNINIPSIFQHINHISHQKGRNTLFRFFSRSLPGINYERNVPCKICNNIIRDPYTHLFIDCMQVKEIENIIISTFNNLSFFKIRNWDLNSLDISKTNKKERIYPNLIGIIIHQLWRIICHKLFNQDESKTPPSFDPTLIEKELTNLIKIEKFILIKKIERSETIYKLNNRDQLIINFNTSWHNPNTPNPIPL
>DINOLT1_gag#LINE/DRE 223-1584 [Dictyostelium discoideum]
MNKLANTIMTESTETLADKIKKSNELRTKFKYLKNTYRTLDKISEAIYHTQIELKQYKFMINIPDEISNNLKAELEIHLQGDDKIIISKNKFKILTDCRTQVIKYSNVFNGVLKGVHRAIIKPKKIFKTFNWEKSMDIVEKTLHEEGLEIIKLDNLGENLIIHSFNSIISPEHKDQLIHCKHITILFLTTTEETKNQRKTNKEIEDEISENSKITELPNPEIKENTRINIKSKEESNHKNTSESKNNNKNKIENRKENNKEINNDNIKDKSKNEKVKENEIENKKPTTIRATTTTTTTETTNTINNIEKRKVLRVPPITVTYSVDSKEKRKMELTEDEEALEVVRKMFENEEENRIFEEKINNQKKKETPRLASIKKRQTMSPIQNPESPATPETVKRKRSNSSPNPTTNHQEISTPYKTPTKITKEESDLMEAALRDKLPKVLQDILPSVSFV
>DINOLT1_pol#LINE/DRE 1694-5128 [Dictyostelium discoideum]
MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNLNITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSSSQIHRIKNPSNGEIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTIKIPEHFIPYCSYNTNYS
>DRE_gag#LINE/DRE 391-1725 [Dictyostelium discoideum]
MKITNNTTNIKQHKCLQKISEIVDKTQLKKKQFKYVININHEPDDKIKKDLEKSLDKKDVLIKSNNTFKILTDSISTVIYFVNMFDAELKGQFITTLRPKNMYTDFDWYKSLTEIEWVIENEGCKLIKSEIKGETLIIKTVKRVVEEYDTIIELDNLTLIGHSNKGWRDQTSLPENQEENKNKKQSDEQQPKSTSEQIPKQGKRTIIIPPITSSSNDKTFMALDDTAQKVIDASLENVDELTRIENEINTQSIKNQEIKTKSEKPIEPPSPYNTPIKQHGETKRLTTEEKLREVNDIFDFTSPNTDAIRKIEFPLSIPSNQWFFSSPIKHIMSFSPTYGTPSKIIDSPSKLLNTPKNKQQDKTNRTNKTPVKPKLGEYGQKSIKTKMDEDIDNFNKEILKQISKSKNPTNTQDQQHNEQSKDQLEDKINQKLQKVDKNLPQIKL
>DRE_pol#LINE/DRE 1701-5159 [Dictyostelium discoideum]
KSTPNKTIKKNTIRIGVWNVQGSNTIQSASIINTVLDNNKLDAALLTETNIKTNKIYSINQQYKNKITHHAPIDKTGQGVSQIIINTQIKTTTKTINERIISSEWMIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIEQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKLLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKSGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK
>TRE3A_gag#LINE/DRE 170-1423 (TDD3 similar) [Dictyostelium discoideum]
MNSYADAAKMANPSTHMDEASENFIKEFSTKTAEIKETYPKLSIGLKDISKYCETILNMTALSTYEKNNGFYPITLEFPKMDLMGLEEMRKTLSNYDIPIDKIYIGKGTRKTIHLMIKNEQSLLNIIRDRSKLGTFITSSRDYHVLTGRVRIPREKAGIVDALIKTAFAEEIPYAIYHTIYSTDHLLVFGLIECKIGDQMKSGQHNTEIANFTIRTATKTYSSQKKNKKVESNNTEEPLEDEMTDDPPNIQNRIAIKSSQPKPQQQTNNPANNKSDKQSTQEKKAQSKKSSQPLPPKNQAESQSVKPTTTTTTTSNAIQKDNANKTSTNIHSSSENREKTPNIPPSHKRKNEEIHSNNEVTQLSPTINRSNPYIPSTPKTPVKKERKGIIESFIESIYPSPSKPQLYDSQEEIDIIS
>TRE3A_pol#LINE/DRE 1423-5127  (TDD3 similar, but with frame-shifts) [Dictyostelium discoideum]
MVVIKINQWNVRGWGTDTSFKNKTDFIKSQSPPNSLALTIVNELNADATQAHQLFPGSIISATNRGNGIGILNHNNQNIKLSPIFIIEGRLIISDILIKDTTTRILAIYAPAQPDKRKTLASTLNKHFNNQYHNLTSNPKKNIDIIAGDFNCLDFNDNHTSNDDQGNLTTQSPDEMATVIEAIRISNNLMDMDQLNKRPTFSRTIHNTNNNLTRILERRLDRIYLNNSIINYSQLYLRNLIPPKINDIPLSDHNFLSTTFTLPNIQMNKRRWRLKKSSILSSIMLKKIDFLLNDYSRELSSNHNSISFSQLNSLLNKIKQLYTEFQKQNDYNNKANIKNLISLLETEFKDQAFATLSAINESKKREEQLKQELNNYCEETSLKYISARIKKRHNDFTINAVKDAQGRTINKQELIEEEYVKYYSNLYDYKEDDPPSHYEMLENWTVTRDSTWDNLENEFTSQEILEVIKQLNPHKSPGPDGIPNLFYITHKEKLAPILASAFNDTLRNPHLISKNYKEGLIITIPKKGDPELIKNRRPITLANCIYKIHSKLINNRIIPILTKVINHNQKGFVPGRFIIDNIISMNELINYCNDKRINGIITLYDFEKAFDSISHGSILRSLQHINIPTNIINLIMNLLTKSEARIEINGRTTIPFEIKRGVKQGDPLSPTLFVLVIEALARKILQDDRITGLPLNNSNHREKFQSFADDSASMVPDSQQLELVLQHFNSFCKATSSKLNIDKSSSILIGNPDNTNQRIPISTNPERYLGYFFTGKGITRKMPEILNTIRSSLVLWKTTDSTIKTKTNILKAFALSKLTYYSYVENFKEEELNQINKLVEWFLSAPNNKNASGFQVINLMRTKRARYPLKVGGWNIWNIELRQLAQKLWIINQFILALETKQTNSSHHKSWEYQIQKNKFTSRYLKENLDEWNKIRIKKAIFNNNLTSIKNENGQPLSLAEWYTTIQDQNPTIPKTEFQSSLNLRGYSYNQLFNNILKIKDPKTRDTMFRFHARCLPINYLHNKQCPLCKEDMSKDPYGHLFFSCKKTKQFIKINKLKNFIYITTGKGKNWHHTRIRQNNNFINRITPKLSPTAKKDQEVNADYANHRFHKEYFEWNYKAIDYDLTRSFAYRNLMALILHNIWIWICNQIYSEDPLTDESLSYSSLLKKWHKLATLEYIKKAKDLKNLSAKDHNNFKDPKILLTSTIKLRKTTANYYCIPESSLPNIISFDQFI
>TRE3B_gag#LINE/DRE 139-1347 [Dictyostelium discoideum]
MADDHSTELQLNHTDNNTTNTNNTSTTSTTKNKSAKIDTPKKQTPTNQLSLNKGLDNQLDIIAPPSITRPLSFLEKNNNTINIKCYFNQPHIREELTSKDDTRIQQIHKNIHKLFEDILSPSAFKIIGATAFVNCNVDKLTSIINLQNQLALNIDKLNYRFDISSNDYAIIKTFIKTYSPKHANDAITNNLTKFTSCTSIESFTVTYSYAVAFKSYIITYHLIDHTHNIVDQKIEQPSGITRYIKAATRSVTKHKIQHAKNADMATTIKNAITNPNMNKNNQPPKNNINTPPINEIANSNRNNNSLQNSGSKAILNESLDINNQSQNNNEISHKSDSSNNNNGKNSLSMSNPTDPTIVPQKPLQSQPNKPSAPTPNTINTRRSSNALTTQPVNTGAAKPSKV
>TRE3B_pol#LINE/DRE 1341-5171 [Dictyostelium discoideum]
GMSSKINFITWNCRGFTENPNNQHNSYQKAVDTLQLLISKLPPRPTISILTELNSSPLQLKHDFPDHIISVTKRGNGVIIINHNPNTLKLKHISTIDGRAILADVIFPNQLPIGILGIYAPASNNTIKKNSYATSLQTLLHNHSTNPIPNQSQHVSIIAGDFNCIHNDNSLLDDIIQSYTYQHHLIDQGEFKNTPTHTHGNRLDRIYTQYNRIDPENIYTQVHQIPSSLSDHNPISTTISSPFQINKHKKRWILSPGTANDHEAINIINHLITNHNNTSINQFTNWSKVKSKIIKTLKNYQYNKDKQTQRAKQILLEKAAKFKHLEEQCIAEYNIICNKNKLHQNHTNILKKHINGEIPSKYLSAILNKRSKDAKIESIQYGNIITSDPDQIENAFVEFYTNLYSLQICCPITHQLMLNTWPIIKNEYWNGLDSPFIQDEVEAAIKTCNPNKSPGPDGVTNAFYINHLNQVKPILTTLFNDILENPHHITTEFTEGLIHTIYKKGNPLLISNRRPITLLNTDYKILSKVINARLLRILPFIINNNQTGFVPHRFIIDNIININELINYLKSKNLPGIITLFDFFKAFDSISHDSIKRTLIHIGIPIKLINLIHKLLSDSQAKISINGKTTRKFDIKRGVKQGDPISATLFVIVIEILARTINADNSIIGLPISPNPQIKIKFTQFADDSTTYNINYEQQQQSIKHFDNFCASTSSSLNFDKSAIIEINPHKITDKHIINNIPQSKRIPITKKDQSERVLGYFFNHNGLHRKLPETMKTLIKSLVLWKTSGTTLKTKTTIINTYSLSPITYLSYLEEFTKDEEIQINKLISWFMNSPANSESPTLNTNSIENNTSTIHSRAKIPLMCYDRSLKPLKEGGWGMWNIQLRQVAQKIWIYNRFLQMHKSANNSIYMISWMDQIINKSISSPYLIKIKKEWENYATQIGHLKDKVQILQPILTKNQPSQTLNTNNISLPPTLKEIYSTILNNHQCKSKDYIGKKYSDLLLTSHQQSIQLLWKYTYDQLFVKIQKLKDPKGRDTMQRFHARCLPINHLHNKVCPICNNEMNNDPYGHLFFNCQHTINFINHDKLKYFIYKNCNGNKNWSLTKNQTTKLYTLIYKPQTNNKAFKPDPTININFHFAENAQYKKYRFNWNYINTNLDLVRTHAYWNIISLVIHQIWIWLCKSLFDINITQSIDNWNNQINNTTLDYDILKSKWHKLIRLEYSRTLSNFNQYSIKNNLTKTQKETQWSETIKKFKKEWSINTNEPIPTITPPINY
>TRE3C_gag#LINE/DRE 175-1131 [Dictyostelium discoideum]
KSKIFLYKHIIKKKNNKNNIKKKKKKKKMNFFDKLKGELNLGEEELNKKTIQIRLFYPHTLELNSNSTKLIDNFIVNGTLNIVRRQKGITVFGRILKEKFTLLHECYSTFKYEDFPLQKFILYTPGYHYVHFYTFTKNIIKKINNQMVKENWGLEPLLIDECNIVMLPDVIRYSCILLFNKEDDISIIKTNIDAIKGSKHPIRAFISEYNNKEIRDVRKKKNTSNKNQQPTTTNTTKSIPSTPPTTNASTTTPITTTPITTTQTTTTPTTTTHQLPTSNTTINNLNKTTTTTTTTTKPINKITTSNGTKFPIASSIRK
>TRE3C_pol#LINE/DRE gi|5410438|gb|AAD43059.1|AF134171_2 pol [Dictyostelium discoideum]
MEQLKLLLWNCRGNQSTNAKNKTEETIKRIGTQLALLTETNFNGFNHHKTMFNFERIDHGSGKGTGIAIENRDTRKGHISINFKDDDGRILSIKYNSFNSINILLIYAPATISERNTFIINSKSLFKKYNSINHQIIAGDFNNNHDCNSFFGTELRKIIDQDMLLDTGIEENTPTFPRSMKRLDRIYCHPTLLNQNSKLVVHNTVFNKSDHFPITITIQTNRETTTTTTTKLERLPWTLCKEILNNKHIHDGLSELISKNKDKIKSVEEWTKFKNNVIRDYLKKEQNKIKKEKNKRKYVIHKLLGNSDIIPKMRKELNEEISRILEEERKVKAWDIKLKLHLHQETPSKYLTSILKSRAKDKSIFQIKDKDNKTISDKENIAKRFVEFYQDQYEEKEDNEETHKKLLEKWEVDVDLIKKLEIDRPIRIHEVTKAIKTSSIHKSPGLDGINALFYKYHINSIARILTIAFNDLLTNKKEIPTKFKEGVITTIFKKGDELNISNRRPITLLNTDYKILSKILNSRLLDITSKIINKFQNGFVPNRFIQDNIQIMKEVIEISNKRKNNTLITFYDFNKAFDSISHKSITRTLEHIGIPPKFTAILLNLLKDTKNKIKINDFLVNGITIRRGTKQGDPISPTIFALVLEPLLIDIINDNTIKGFTLPNSKSLKLTAFADDIATFTNSTEELMKINTKIQKYCSATSSSLNKEKTVMIAIGDKPHDLPFQESTVPERYLGLNFTKTGLNSKYNTLIQEMKNNLIKWKSQAITMKAKMTILKTYVLSKLTYHQYMDNLNEEQIEEINNMTRWFLFSSVKNTYTEERKYKTMMKIDRAYADWKEGGIKLWDIELRHIAFKIWYMNRLLHNNYNNNNNTLQEWYMEQLSRKKAHTSTLNDMCRHWGVFRVKFYQNHPKINELPDCIRNDNDEPLKLKEIYELMIKDRHPTPRRTEWQKLWAVRYNTAIPKVFININSISHQKGRNTLFRFFSRSLPGINHERDTRCKICGHLFRDPYSHLFTLCQDILDIEKTIISTVNKLSFIKIHRWSMDTLDISKYNRTERIFPNLIGIIAHQLWKIICHKLFNTDESKPEPKFEQKVIETELLNLIETEKFITLKKIKHDEAILKNTNQDLHKYKFNKAWQTPAAPNPLPI
>Dong-1_NVe_pol#LINE/Dong-R4 47-3433 via tfasty with Dong_FR_pol, 1 stopcodon. [Nematostella vectensis]
MKMSSNSNRDNDVNENGGVLSSGREGVGGQAPLGRQQTTGRRKWNNALYRVVMECYFESKPGTRGYRRRMLNSWQNRGMFRLSEQNLADHARAIRNNNWLSDIELEEIKRQVNNVEGMESNNVVVDEVEVVDEGDGQQDQGVNDEQRFESSGDEGTNEFQALNVEELxARQREILDDIKRAFEEGDVEELRSLKHVERSKLREVSQEVNKVLEHIKTVDITGTNRLVRAAAIVVIQRLGLKKRSNQPRKEPFWKRRIRSKIDSLRKEISKLESSKTMQKKGGRGLTQIMKKHQVKKKGLNVVIEELKQRVLASAAKLKRYENRINQFRQNRLFQCDQKKLYQELDGINMENNIIPDPQESCEFWKSIWENQSEHNREAEWLDDVREELSQHVPQEDVVIKEADVKKQLKKVANWKGPGLDGVQGYWLKNFRALHHPIAEQLNLILESGFVPQWMNQGRTVLCVKDLTLGNTAENFRPITCLPLMWKLLSGTLADKIYDHLENAEMLPVEQKGCRRASRGTKDQLLIDKMVLRNCKRRKTNLAMAWIDYRKAYDMVPHSWILETLNMTGVAPNIQLLLRNSMLNWKTTLTSSGQTLGEVKIQRGIFQGDSLSPLLFVICLIPLSIILRSASGRYQLGKDAGSLNHLLFMDDLKLYGKNEREVDSLINSVRVFSSDIGMEFGLKKCGILILKRGKVVNSDGIELPDGQKMKTIENEGYKYLGILEYDDLLHGKIKEDLSREYFRRLKKVLKAKLNGKNTIMAINTWAVSVLRYGAGVVKWTKTELENIDRKTRKRMTIYGMLHPRANVGRLYLPRRCGGRGLIGVEDCIHLEEKGLADYVHKSEEPLLLAVRNEGILRVEEEQTARVLKEKLKEKRQEDWKTKPLHGQFLRQTEEIRDESSWDWMTKGNLKKETEGLITAAQDQALRTNALKAKIEKQQISPLCRMCGLKDETVNHLLCECSKMAQSQYKHRHDNVARIVHWAIAKEHGFEVKEKWYEHELLPVIEKPDLKILWDVTIQTDREIQARRPDIVIVNRKEGECIVIDIAVPGDANVGEKEKEKVLKYQDIRREIARLWDIKTCVVPIVVGALGTVSKNLTKHLSSIGLKTRIELLQKGALLGSARLLRQVLEV
>DongAG_pol#LINE/Dong-R4 Previously named Dong_Ag_pol. This is  gi|34392535|dbj|BAC82595.1| reverse transcriptase [Anopheles gambiae]
METRSMRKRTTRLPEEGAPTGAGPGTGDRASIQRLEDEMVQERSFSQRALPVPRTQNRNGSPINHQGNAASANVAVADRQQSLILAGGRRQRIMWTREMNHYVIRCYYVYTRMETDMPGRVKMLGMFNDRFPRFAHQLDLSKLYIRQRAIILPEELEFIKLEVRREFGEEEAGWRESSRISARLNTIDQNTSRASEDRDLDEPTAPGLSVDIQHQMATAVTQFHGTDPLSRHRLPKLHYSYRLKTAVSIINQDVLPQYLDSVGSIEDLQLIVYSAAVAVVRTLWLRTYPQGDSEGRPCSKAEKPAWMRRLENRINATRTKIGRMQEYQRGNSSMKVVRQIAEMVKPKELRDLTDANITEVLDIHLQRLSALAKRLRRYAECSKRKEQNRMFNINEREFYNWIRNDKPNFREGLPDIGDFTQFWANLCEKPVQHNSEGMRLAEDERFSDGIEDMPVLVVNAQDIREATQYTRNGAAPGPDFVYNFWYKKLITIHEQIAACFNTVLEDSRKLPKFITGGVTYFLPKDQNTKNPAKYRPLTCLSNLNKVLSSVITQKVKDHCDTNNVMTEEQTGRRKNTQGCKDQVIIDAVIVGQAAKKQRNLDMAYIDYKKAYDSVPHSYLLKVLQLYKVDGNVIKLMQHAMGMWSTSLHVTDGKVVLRSRSLNIRRGIFQGDTFSTLWFCLAMNPLSRTLNQQCNFGYLLKSEEISTRITHTFFMDDLKLFAETVQKMHHLLKNVQGFSNDIKMEFGIGKCRSIHLHRGQVLDADSFRANEQEEIRHMVQGETYKFLGFLQLRGIHYAVIKKELQDKFLHRVSCILKSFLSVGNKVKAINTFAVALLTYSFGVMKWSNTDLEALERTIRVVSTKHQMRHPKASVERVILPRKIGGVGIIDIQALCISQIHQLRSYFVESQNRHELYRTVYKADHGLSALHLAQQDYQLNCNIKTVDGKGATWKQKELHGTHTHQLNLEHIDKVSSSTWLVRCDLFCETEGFMVAIQDRVIATWNYRRCILREDVEDRCRKCNSGGESIEHVIAGCPVLAGSAYLDRHNDVAKIVHQQLALRHKLVERFLPCYRYLPDPVQENDCIKLYWDREIITDILIRANRPDILVYEKRKKRATIDIDIAVTLDHNVQTTFSTKVMKYHDLAEELKQTWYLEDIRIVPVIISATGIVPMALLRSLDELELQRELPRIQKAVILRTCSTLRRFLNPYN
>DongAa_pol#LINE/Dong-R4 189-3851 [Aedes aegypti]
MKANPAMETRSMRNRRMRSPEEGAPTGAGPGTGDRASGQRLEEDNVQERPSSQRAQPVPRTRNRNGSSRNHQGHAAPTDVAVADRRQSLTLAGGRRQRIMWTREMNMYVIRCYYVCTRMETDMSGRSGMLEMFNERFPRFARQLDLNKLYTRQRAIMSHNMLTAAEVEYIKLEVQREIGEEGTRSSDTSRRSSVGLDAPITSESRDSPAPTAPGPTADMQRQQLRDELALHMGTAVTQFRGTDPMSRHRIPKLRYSYRLTSAVSILNQDILPQYLEAVENLEDLQFIVYSAAIAVVKTLGLRTRPQGEDGTRPNAQKPVWMRRLESRIATLRSKVGRLTQYKQGNRSTRLVRHVAEIVRPAELRDLREVDITEILDTHVQRLSALAKRLRRYGECSKRKEQNRMFNINEREFYNRIRNDKVDFGEGLPEIGDVTQFWANLWENPTEHDGDGMWLAEEERQCDGIGDMTAVVVTAQDIREATRYTRNWAAPGPDFVHNFWYKKLTTIHGRMAECFNTVLGDPTQLPEFITRGVTFLLPKDQHTADPAKYRPITCLSSLYKVLSSVIARRVQAHCDANNVMTEEQKGCRRNTQGCKDQVIVDAVIVGQATQKQRNLSMAYIDYKKAYDSVPHSYLLKVLQLYKVDGNVIRLMQHAMGMWSTSLHITDGTAVLRSRTLSIRRGIFQGDTFSPLWFCLAMNPLSKALNQCNYGYQLKSGERSTRVTHTFYMDDLKLFAESVQRLHQLLQLVTTFSNDIRMEFGIDKCRSIHLRRGQVMDASCFRVNEQEEIRNMVEGETYKYLGFLQLRGIRHTMIKKELQEKFLSRVNCILKSFLSAGNKVKAINTFAVPLLTYSFGVVKWTKTDLEAIERAVRVAFTKHRMRHPKSSIERVTLPRAAGGRGVTDIQALCVSQIQQLRAYFVESQNRHEIYRTVCEADHGFSALHLAQEDYQLNCDIKTVDEMIAMWKQKELHGTHPHQLELEHIDKVASNTWLVRGDLFSETEGFMVAIQDRVIATKNYRHYILHEDVEDRCRKCNSVGETIEHVVAGCSVLAGSAYLDRHNEVAKIVHQQLALKHNLVDRFVPYYKYLPDPVLENSCIKLYWDREIITDVLIRANRPDIVVYDKRMKRVTLIDIAVPLDHNVQSTFSNKIAKYHDLAEELKQMWHLEDVRIVPVVLSATGIVPKSLLRSLDELELKKDLHSIQKAVILGTCSIVRRFLNHHN
>Dong_FR_pol#LINE/Dong-R4 94-3540 [Takifugu rubripes]
ARLLTHICLHLGMSGTXTDRVIPARTSPGSTRSASGVGEPGPPDVKLATGTRHSWSRAENVVLMECYYGSNPSERGYMQRMWEKWVLRNPTSSLTKKQLLAQCSNIRNKKLLSQLEIDEARRCASPTVQICYGKGEPGRQVSXGVISSSPPNIEIGYKAPMTDGLGTRAADLRERIMKSWGNSTTSLPRLTHKVPDQSLLEDMNTALSTIPTTTITETNQLMYAAATVILQMLGYKMKSMNSQKEQMAPWRRRLEAKIMATRREVSLLTELSRGVNLRTEXPKKYNKLSTTEALETAKQRLTALATRLKRYTREVEARRINKVFSTNPAKVYSQWQGNKMTTDPPRAETEQYWKSIWEKEATHNTXAQWLQDLQTEHSQLPEQDPVVITLADIQTRVSKMKSWTAPGPDKIHAYWLKKLTALHERLAAQMNQLLTSGNHPEWLTQGRTVLIMKDPQKGTIPSNYRPITCLSTTWKLLSGIIAAKISRHMDQYMSRAQKGIGNNTRGAKHQLLVDRAIAQDCRTRHTNLCTAWIDYKKAYDSMPHTWILECLKLYNINRTLREFIQNSMKLWNTTLEANSKPIARVSIRCGIYQGDALSPLLFCIGLNPLSQIITKSGYGYQFRSGTTVSHLLYMDDIKLYAKNERDIDSLIHLTRIYSKDIGMSFGLDKCGRMISRRGKVIATDGVELPEGNITDVQDSYKYLGIPQANGNHEEAARRSATAKYLQRLRQVLKSQLNGKNKIQAINTYALPVIRYPAGIIPWPLEEIQATDIKTRKLNGKHKIQAINTYALPVIRYPAGIIPWPLEEIQATDIKTRKLLTMHGGFHPKSSVLRLYTKRKEGGRGLVSVRTTVQEETTSLREYIKKMAPTDRLLSECLRQQKPTKEEEPEGLSWKDKPLHGMYHRQIEEVADIEKTYQWLEKAGLKDSTEALLMAAQEQALSTRAIEARVYHTRQDPRCRLCGDAPETVQHITAGCKMLAGKAYMERHNQVAGIVYRNICTEYGLEVPGSRWETPPKVLENKQAKILWDFQIQTDKMVVANQPDIVVVDKHQKTVVVIDVAIPSDSNIRKKEHEKLEKYQGLKEEMERMWGMKATVVPVVIGTLGAVTPKLSRWLQQIPGTTSEISVQKSAVLGTAKILRRTLRLPGLW
>Dong_pol#LINE/Dong-R4 419-4006 Previous name: BmRP2_pol[Bombyx mori]
MLRRGRIFLPASTKAGKTRGRMKWSREVNLFIMRTYYYVTKLETDLTIYRKKLHEHFSLKYPNVIISQQRISDQKRAIERNKLLSQETLDRLKEEVRKQLEDEQTNNVENEKLNSETYSHEYTTLTPQTILTKKTQQHTNIISSTQTSHSSTQTESITLLLENEVDILNTNPTEGATQTQEVKDKFETNLTMYSGMDPKARPPLPKLKYSSKLNELIRLFNNDILVDYISPDTQLSDVHTLTYCTAVTISEQLKYKIIAIEGNARHKKNFKPPWQQRLEKDIAKLRADIGKLTQYINNNRSKKVVQSVEQIFKNTKIHTSHENGNKKSQEFLDTLKQKLALKAHRLKRYNNSQKRKNENTIFLTNEKLFYRNLIKPKTDRDNSNIDIPTAEQLEMYWARLWENSAKHNDKANWITEEKERWDTIEEMQFDDVTEEEITTITARLHNWKSPGIDKIHNFWFKKLICLHKTIAKNLTDIISGNQSIPEFIATGITYMIPKGDFSIEASQYRPITCLPTIYKILTTVITKKINSHIEHNNILAEEQKGCRRGHMGCKEQLIIDSTIMKHATTKNRNLHCTYIDYKKAFDSIPHSWLIQVLEIYKINPIIISFLRNIMTHWQTTLKLKNPPNFVTTRQIAIKKGIYQGDSLSPLWFCLALNPLSHQLHNDRAGYRIKQQDNTETIISHLIYMDDIKLYAKNDKEMKKLIDTTTIFSNDISMQFGLDKCKTVHIIKGKVQPGDYTIDDTNTITAMEPSDLYKYLGFQQLKGLDHITIKQSLTSEYKKRINAICKTKLSGKHLIKALNTYAIPILTYSFGIIKWSKTDIEQIERITRTTLTKHNNLHPKSAIERLTIKRQDGGRGMIDIWHLWRKQIHSLKTFFYIKSDLSEIHRAIAQNDNNYTPLNLKQKELIDNTENLRNRNPQKDMEENWKKKALHGRHPHDLSQSHIDSKASNMWLKTGSLFPETEGFLIAIQDQVINTKNYRKYIIKDPTIRDDKCRKCNTQPETIQHITGACSTLTQTDYTHRHNQLANIIHQQLALKHKLIQNTNTPYYNYKPQTVLENDSCKLYYDRAILTDRTIHYNRPDITLQDKNNKVTYIIDIAVPNTHNIQKTFTEKMTKYTELKEEIVRIWKQKKAYIVPIIISTTGVVPNHIHNSLKLLDLKDNIFISLQKAAILNTCRIVRKFMQLEENQTYYTQ
>EhRLE2_pol#LINE/Dong-R4 gi|34392537|dbj|BAC82596.1| reverse transcriptase [Entamoeba histolytica]
MSTTGKKEIRKEIGREEQPSEEDTKEFLNKIYNRGKRIKKENERIKEIIEESNRRNLKRIIITKENIENVITRIPSWKAPGIENMHGYYWKRLESVRDRLVIVFNEWLDTPENIPIEMLTGRTILIHKGGDSKKAENYRPITCLNVIMKIFTSIINRKIEEQLANNEEKYQINKSQYGNKKRSLAAKEVNINSLLERNEREVQKKRYLESFYDIRKAYDTVNDEWLENVLRYFKIPFQITELIKSMSSRWRIRIGYRYKEEIREVKIKNGILQGDSISPLLFILQMNIISDVIDRTNEKRLKVKHVLYMDDIKVTSETKKGMEMVHKNIIETIEVIGMEVNVNKSGVMKKGNIGIQDNMKDIPIVDSEHQYKYLGVYQFTRNDDVGCIERISKSIEEGIKENNKGNDSSMNYINRINTEIIPKFTYSASVVKLPIMKLIEIDKMIRIEVKEGKIIGAGMCTSRLYVNRNKMGDGLKSIRDEYAIKLIRSILYYTWKRGNRIGDMIGINENKNRMLNRLYKSMLKKRINKEEFRKIVEEERGKRDKNRIIKYVREKFQEDYINKWRNKKVNSEILKGFEDKTMEQKKTIKVWKGINVIRKAYIQIKKMEEKARNVGVRKALMKHDMRYAICPICNKIATINHILLNCIVTKKTQMNKHDRIGEYIWRSLKIKYQLYENKEKMKMREEENTKKLIIRKEELGKNERRIEKDKILIVWNHEVVNRSEDKFHKRIDIYVRDLNKKEAMIIDMTIVRDKNISKAFTDKINMYSKLHEHIRKIERLVRVIVIPVVITVSGLINKETVILLNAEGIEIPREIMTREIVISNMKDLMRYCGDHSGEYSNVEIPEEEDSQESEGREEILT
>EhRLE3_pol#LINE/Dong-R4 gi|34392539|dbj|BAC82597.1| reverse transcriptase [Entamoeba histolytica]
MMKYGKMQHLNKSKEDEYPDNISTINFWKGIYETNTNIDFLNINLYEILNENRINNRMSIITPNELDCDTKFVDKFEIKLKMIKYKGFWIKYLEQPKKYLLKLFNEWLNNPNEILLHFIQGRTILIYKKGDKLDTQNYRPITCLNCLLKVYTSILKMKIENQLMLNPIEKQLSLNQIGCKKYTYASKEGLLYNTIINQLLLKTKWKWVETYYDVSKAYDSINHQWIKQCLIYFNILLVVINSILYILNNTYLNLYYNQESDNMINVERGIIQGDSLSPLLFILSIDVLSKQLDKQISKLNIKMNGEEKQVQLNHILYMDDLKIMTNSLDEMEKAHKLTKEIFNAIGLKINLEKSGIMTNISGKINGELDELPRVTNDNPYKYLGIEIGDKININKYCTRILNDVSSILSSLNTMKYSSLNTIRKINSDIISKLRYGFCIVPWKLGELEKIDKQIRKSLIQLQLYSRNIPKSRLFVKKNELGLGLMSPRDECGKELLRIYLKYKWRSSTEIGEMIEAIKESPNGIIKRMKKAFGKNINFNELMNVIELNERKHNVKEIFEWINNELNDRYLNEWKEKKCGEYIRCANGTFNDKKLTVATWRSLDIKRNEFLQIVKMQEGVTMTGNIKSKILQNDALKYCKHCPNTIASISHILLGCPVMKKNQISKHDYVCKQIFKHILIIHFNEFDAIDFDNPPKCINNDKMVITYNKDLIVSDHSFHARRPDIYYQNMKEKKGYIIDVAICQDNNLELNYIHKINKYKELQEKIRNNRELIYVEIIPVILSINGLIHKESVRRVKSLKLK
>Plat_R4_pol#LINE/Dong-R4 238-3726 [Ornithorhynchus]
SGTARNRSSTQDQRVVTAPXVLPDGSQATTRTGLPRQRIKRTAEMNKXIMXRYFETTQLETETTAYRPAAYQXFIAKYPELTARLTEQNVADRRRAITTRNLLIETEINTIRREVSEQLGINRKADEEAPVDNESEDGDTPLXKKSETKEEPAVIANESHEDQQLFQIVEHHFNAAVTAFGGTDPIQRRSIPKIRASKKMGIIMGYLNNRVLPQYLNETSDPEYVRYIIYCAAVAAIRSMGLKTIPQHNNKRVNRVKCEPEWRRRLEQKISKLRKQLGRLTQYKNNNRSRKLINKVARIITPLALNDLSKDKLIEITDTRTQKLTAYSKRLRRYKESRERKNQNQGFQSNQXKFYRDLQREKIDYSEGVPPIEDVTEFRSSIWEVPKSHNTEATRLREEKTRTDGIMEMSPIGISEQEVTEAIEAASNWKAPGPDLLQNFWLKKLTTAHGAIARCFVKILREPEEMPDFMTSGNSFLLPKDNDTSNPAKYRPITXLPTIYKLMTSILAKKIYSHCERNNIXTEEQKGCRKLSQGCKEQVIIDSVIVNQAIKKQRNLSMSYIDYKKAYDSVPHSYLIEILKVYKIDPSIVNFLQRAMSKWNTTLHLSNGERTVKSRAILIKRGIFQGDSLSPLWFCLGLNPLSRKLNNTGHGFKIKHEDEHHIVSHLLYVDDLKLYANSKTQLHKLLKITKNFSDDIQMEFGTDKCKSIQMVKGQLTVTDGFTVSKDQIIEDLVQGEAYKYLGFLQLRGINRIAIKEKLKKTFSLRAEKILKTYLNAGNKTKAINAFAVPVLTYSFGIIKWSDTXLEAITRNIRALMTKRRTHHPKAAIERITLPYEEGGRGVINIYNLYYSQIAKPRDYFYSKSDCNLYKSVIKTDRSFTPLKLGNIEYDPAANLQTIQRQIQTWKQKELHGTYPHQLSQNYVDKTVSNLRLKRGLLFAETEGFAVAIRDRAIGAKNYRKYILKENLLDDKCRRCVAANETIEHVIGGCATLAAVDYTNRHNNVAKIVHQQLAFNRKLANGLTPXYKYEPENVMENSCYKLYRDGAVITDRQILADRPDILLLDKLNKTAELIDIAVPLSRNIPRTYAEKINKYVGLVEELKQMRRLKXSKVKPIIVSATGVVPHTLVKRLKELGIHYTPASIQKAXLLDTCHITRRFLSQQ
>R4-1_AC_pol#LINE/Dong-R4 159-3569 [Anolis carolinensis]
MENQTQTKSILARSSPRIKRTAVDAADSGHPSTSGLRNHQNPNEQSQKRQKYTMPENRTIMKCYYKSEPQRRGYQKRMHQLWKQEYPDSQITEPRLADQRRFIIRNKVFSEVELEEIQKICKVDYHQTTAQTAAETPATLGMVEQIEPEESVALLQEFEEPALETSVEPPGTLTARQQELKDKIMAHAAANAIRQRLPTLKTVPKRHLAPLMKDVNAALSTVQITSIEQTNQFAYSAAVIVTEELGLLQPRQPQRKSTGKPKWKVRLELKIKKLRSDASNLKNMKERKLKNDKIKQYLIRKYWLNTRKIEEALEIVKEQITATARKIERYEARIIQYRQNQLFQSDQRRFYQSLNQTTDTVTIKPEKTATTKFWKELWENNKNYNKNAGWIKEFEGKFSQNKMELMEITTEMISKRVQKVKNWTSPGSDQLHGFWLKHLISLHGKMAQQFNEMLQKGSISEWLTTGRTYLIQKDPAKGAAPGNYRPITCLPTMFKLLTGIIADRIQDYLEEKNILPDEQKGNKRKSRGTKDQLLIDKMILENCKSRKANLHMTWIDYKKAFDSLPHSWIIKCLDAIGICKTVGTFIENMMEHWKTELFVGNESYGLVNIRRGIFQGDSLSPLLFIIAMIPLSTILQKTNLGYQISKNSHKISHLMYMDDLKLYGKTETEIQSLTNTVRIFSTDINMEFGLDKCSTVALKKGKIIESEGINMPNGQTIKCHQPEAYKYLGILQLDNIKHEHVKTVVSKEYTQRVRKILKSKLNGGNTIKAINTWAIPVIRYTAGIINWTQVELDNLDRKTRKLMTIHHSLHPRSDVDRLYLPRRSGGRGLLQVKQAVKEEEHALAEYVKQSEEPALIEVKNQKLLKTQQTKNQYKKTALQTRADSWHNKTLHGKFLDKIEGKADKEKTWLWLTNGTLKKETEGLILAAQEQAIRTNAIKAKIEKSADDPKCRLCKETDETIDHILSCCKKIAQTDYKQRHNYVAQMIHWNLCLKYHLPAAKNWWDHKPAKVLENEHAKILWDFRIQTDKVLEHNTPDITVVEKNKVWIIDVAIPGDSRIDEKQQEKLSRYQDLKIELQRLWQKPVQVVPVVMGTLGAVPKDLSRHLETIDIDKITICQLQKATLLGSAHIIRKYITQS
>R4-1_BM_pol#LINE/Dong-R4 22-1776 Fragment and large internal deletion [Bombyx mori]
IDLLKQKVAAWSKRVRRYSERVQRYRQNRLFVSDQRKFYRSLEQANVSAVTERPAGQEMVTFWRNLWSRPVEHVEGSWMQVIEDSCAGIPPMSPVTISKGDIKAAVCSSSHWKSPGCDGLQLYWLKSFRACHETLARQFQEALDTKVLPAFLTTGITHLIPKSESTADPAQYRPITCLPTTYKTLTSVLETKISHHIDSCRVLSGAQNGCRRGSRGTKELLLIDAVAGQQVKRNRRNFSAAWIDYKKAFDSVPHTWLKRVLELYKIDDTVRDFLGACMGQWSTMLSLSGVRLSAVVMECDKGLTPLALARDGWQSPAVLSTSDREAIWKGKELHGRFFQALHEPHVDKEASVHWLRFGDLFGETEGFVCAIQDQVIRTNNYRKHILRDGTADICRLCRRPGESLRHVTSGCSMLANTEYLHRHNQAARILHQELALKYGLIEQRLPYYKYQPDAVLENDRAKLYWDRPIITDRTILANKPDIVLMDRTESRVFLVDITIPYDENLVRAEADKKTKYLDLAHEVTDMWRVVSTEIIPVVVSVNGLVPKSLSKHLERLGLNKKSVVAQMQKAVLLDNARIVRRFLSQ
>R4-1_TCa#LINE/Dong-R4 283-1608 [Tribolium castaneum]
WWYKYLGFKQSNRISHSDTKXKLVDSFITRCRQLVKTHLNSKNLMKAINTFAVPVLVYSFGIIKWTNTDINNINIKIRTLFTRFRKHHPKSAIERFSLSREYGGRGFLNLQNLHTRQISSLKKYFLNRSNKNILFKAICLSDHNFTPLNLSNPNINEIISDENSIIETLKEKPLHGRFFKELDNSNYIDKKASHLWLTKTNIFSETEGFIFAIQDQVINTKNYQKFIXKKNNDVCRLCGTHSETIQHLISSCQVLVASDYKVRHDNVAKIIHSELAFNSGLIQTKSPYYKYEPDSFIENDNFKLYWDRTVLTNLTITANRPDIIFISKLERHAFIIDIAVPNTHNIQETYNTKISKYMILASEIKNIWNLEKIKIVPIIISAVGVVPKNLKQNLELLKLSSNLIVEIQKSVLLKTCNIVRNFQHHYLIAISVMVISCLTXV
>R4-1_TCa#LINE/Dong-R4 415-1608 [Tribolium castaneum]
MKAINTFAVPVLVYSFGIIKWTNTDINNINIKIRTLFTRFRKHHPKSAIERFSLSREYGGRGFLNLQNLHTRQISSLKKYFLNRSNKNILFKAICLSDHNFTPLNLSNPNINEIISDENSIIETLKEKPLHGRFFKELDNSNYIDKKASHLWLTKTNIFSETEGFIFAIQDQVINTKNYQKFIXKKNNDVCRLCGTHSETIQHLISSCQVLVASDYKVRHDNVAKIIHSELAFNSGLIQTKSPYYKYEPDSFIENDNFKLYWDRTVLTNLTITANRPDIIFISKLERHAFIIDIAVPNTHNIQETYNTKISKYMILASEIKNIWNLEKIKIVPIIISAVGVVPKNLKQNLELLKLSSNLIVEIQKSVLLKTCNIVRNFQHHYLIAISVMVISCLTXV
>R4_AL_pol#LINE/Dong-R4 gi|903661|gb|AAA97394.1| reverse transcriptase coding region; start site of translation has not been determined [Ascaris lumbricoides]
EDHNPKGWTQSPRHVWCWLSWSVVGRIAMPCSTNSFFERGTPEPHREPISGTDSSESLGMGTHRSPRLNDDEVINGPKGHESDPVHVVRAPRTLHPRRLELPIGVNNLGEASQLRQDSAIAEEAQLESTENHDGRRPPLRGGRKLWSEKEIATLRRLCEAYGNRQVCWKEVQRKFADFHEERTVAALATKWGALKRPRAPMVGAPPTPDHDPERGPAGEGDGGTTSQENVPTDDPIPANGPTEGKESDVRPAVACRCTEPEEQLMESDVRPPAVVRLADPEQHTMKSGVKPVALDGSADLEERPKEKDIEQMGVDFEGEPRFRAFRKAFYGYFRWAVNSFDREPVKRVRRDCPKVFYAYADYLIATGSSKALGPNQSRIGRLNGLVYAAARTIHQFWREEVGHRQQGEKGWYTKTKATREDLQMLISMMESELARRKEKRKPGAKELENIHKLVARLGTRSTSGIVRRLEMTRQRLKLLEDRISLHEQEKRRKRLRKQFAETPSLKLLTKGAKDRGDTMVTMKSVMDFWRPIIGRRVTSNPDQLQVLRDWRDEQKKAYPADLDLEKADLEEKYEGAIRRIQPWKAPGPDGLHAHWWKALPSAKRLLGELVVDWLTTGKVTTGWMCRGRTILIPKKGDRGDPSNYRPITCLNTCYKVLTSVMNSVILSHLSRGEALPMNQRAMRKREWGCTHAMVLDRAMVMDAMAQKKHSLSVAWLDYRKAYDSVSHEYIRWAINSVNIPRSVQLTLKRLMSDWETRFESTQCRPKLRSDKMKVLNGIFQGDSLSPTLFVLCIAPISYALNKGVGQCQSSSGWSAGYGFEIGHQFYMDDLKLYARTPAMLDSQIQVVSEVSEAMGLHLNLSKCAKAHYAPHGAGGAQEAVEGAEGSRKGEIPILGLRSTYKYLGVEQRLLPMEVALKEFEDKFMDRAETIFASELTWGQMATAYNTIAIAGLRYVYSNTNGASPKLLEALKRAATLDTRIRDLLRRHKCRFRNSFVERLYIPRECGGYGLKSVEDTLRESILATWSYIATNPHLAGQQYFFERLAARGKRTPMADGVKILLDLGVEPQVDLKRRTVTVDGIVFEDPTKLHRYLVGKLLKARTEARIRRWKEASLAGRLVNDTSIDMRLSCLWMKKGFVSARNLRDALAVQEGSLLTRACPALKGKGGQEVCRCCHAAPETAEHITSACRYWLPSLYVERHDSVARNLYYVICCRYGITPVHYSNRVSPLSENSQCRVLWNMDMQTRTPMKHRKPDIVVFDLKREKILMFEVSIAHASGLLKQREIKINRYTVNSEELPDETITPYPPGPNLAADLAATYGWQVEFAPVVV
>Rex6_OL_pol#LINE/Dong-R4 Genomic sequence AB021490 43684-46911 via tfasty with Dong_FR_pol, 2 frameshifts.  Rex6 is probably identical to Dong2_FR in RepBase [Oryzias latipes]
MRDNEPHVMPAQTSPGQTRSASGAEGPEHPDGKWATGTRRKWTRCENKVLLECYYSSNPTQRGYMQRMWNEWMLRNPQSRLTAKQLVAQRTNNHKRQLLSQLEIEAIQYNATGEPEQVREEVIPHSHPEIGYTAPTTTIPLSEAATDLKDKIMSTMKTRQPYLGSDVPPESLLETVNEALRAIPTTTITETNELVYTSAAVILEMLGYKSNHGRKQYPPWKQRLEAKIKATRKDVSRLTEAQRGTMRKQVPKRYSQMPIPEALETAKQKLLALSSRLKRYTRDNEARRINRLFATQPAKVYAQWQGQNSRADPPRLETEQYWKSIWEKETAHNSNAQWLVSLKKEHSNLPEQNPVTITVADIQERVSGMKNWTAPGPDMIHAYWLKKLTALHERLAAQINQLLRDGTHPEWLTEGRTILIQKDPLKGAVPSNYQPITCLSTTWKLMSGIIATKINRYMDQFMSNTQKGIGRDSRGAKHQLLVDRTVAQDCKSRHTNLCTAWIDYKKAYDSMPHTWITECLELYNINRTLRAFIGNSMKLWKTTLEANGKPLAQVSIKFGIYQGDALSPLLFCIGLNPLSQIINKTGYGYRLRNGANISHLLYMDDIKLYAKSERDIDSLIHTTRIYSTDIGMSFGLEKCSRMVTKRGKVVHTGGVSLPEGTIADIEDSYKYLGIPQANGNLEQATRKAATAKYLQRVRQVLRSQLNGKNKARAINSYALPVIRYPAGIIRWPKEEIQTTDVKTRKLLTMHGGFHPKSSTLRLYASRKEGGRGLVSVEATIQDETSKMHEYIKLKAPTDSVLSECLRQWRAEDTVLEDRSSWEDKPLHGMYHRTITEVADIKKSYQWLERAGLQDSTEALILAAQEQALSTRAIEAQIYHTRQDPRCRLCKEAPETIQNITAGCKMLAGKAYMERHNQVAGIIYRNMCAEYGLETPRSKWETPPKVVENERAKILWDFQIQTDRMVMANQPDIVVVDKEQRKAVVVDVAVPSDGNIRKKEHEKLEKYQGLREELEKAWKVKVTVVLVVIGALGAVTPKLEEWLQQIPGKTSDLSVQKSAVLGTAKILRRTLKLPGLW
>X4_LINE_pol#LINE/Dong-R4 20-274 Small fragment near N-terminus [Amniota]
SLLINGLTPYYKYEPKNMLENSHSKMYWDRAMITDQQILANRPDILLFDKLNKTVXLIDIAVLLSRNIPRTYAEKINKYVALVES
>GilD_pol#LINE/Genie (a.k.a GENIE2) gi|20148855|gb|AAM12686.1|AF433877_1 putative reverse transcriptase/endonuclease (member with ORF; Burke & Eickbush consensus BK000098 does not have ORF). [Giardia intestinalis]
MNARWYLWVPREQAVSLYLGDHSEDACPLAGHTRWLCGLPCESAKQPTEHLREANDDRHRVLGDDKLILPAHIPNQTEPAMLIHQGARMIASIEQAGTGVALPAIRGLDALVGSCQRAPLPDNTTEQSQSKADPDPEKARRRIANRVNNALSFGAVAKALRALDETPTIDKPEKAKAALSALHPCVLPEGYVGLDYPPSMSSTGLEPATEEEMRKALFGTLNKKASGVSGLGPVQLKAMKQNDSFVKYLTQAYNELTTHPEAMSDVMAMFEFRAILIPKESDGYRPIAIGKTVTNIFHRVLLKRLIRHANYLSCEQIAFKQNAYAVGVRRAHELISRPGMHAVSLDTKNAFNSLPRAEVVRALNEAGVPKVLVDYIRNFLDLRHSRDVKCEVCGVPQGDPLSTFLFCMAIERLLRRLKERGITFLAYADDIVAFHDEGYPAGVITQQATAEAAAMGLTIRSDKCKSTMAGEEVTFLNHPVSPTPASLAPKAIAGAETALRKIENAPITIHQKLILLSLCVVPMVNYAPLVEITSDKADYEELDRRRTRLQQTNQQKLRSPGRLPGVPEEKGGLGLLMPGLYHDELRRAWASLDVNKGTRDPVELSVGGQALQGKGTYFNRLLTRTHQLPDRAAAYCLQMCGVLTEEERALKEKGGSIMAQTRGTCPGCHTARTLDHDMNCPKAAWTRTTRHDMIVACLYLRVSGKFNAELEVKTHSHLSDQNQKPDIWLVDKCKAIDVGVIQPRQMDAYYNEKVKKYRDGTLPIIYGTDGSLHPKSKRHLEELHVDVEKLSVRAAFAIAHMAAEANEHLTKLIRRAGPKAWSPRATVSCHPTSDNRMNPSLGPDDNDREGAQDWTHNRVESQPGEKAPLAAADLYGQY
>GilM_pol#LINE/Genie (a.k.a GENIE1, GiRE1) [Giardia intestinalis]
MRSALSAPSGTTEIGASSGPEPPNHAPTDSHRPLPRGTPDPMTLGDGNDASTTAMARPSSCEPLCGSHGPPSPQPGPGNSRSATDNSPNESSPVHGLQGSGASVARDASPPCLSNDLLPCGQEPLPIPDDGLPYDLGHDNSPSITDEQEARGADLPAPGGRTTVCERCGEVLPDSAAIDVHIGMHHPPPGSPSPSRSPSPLSGSAPPPAAAEPSPSPTPDPVFPYACSMCRARYKTERGLKAHIARLGHYLPLDATVPERIGVPSGSPSPELLRLLTDVFTEMAGRLPPVEALARFLSTCRRMEGSGRLPPAQSLLRKGLLGRAWQALLSETSSAARVPEPQGKEREAIVHELHPRPMPVSLPPVHHVLGPSPKITAKALLKELQAMRPVAAGPSGLGKPHLLHLCGAAGAAELFTSVLTTLFSSRNWAQLQPLCEFRLKLLPKSGGRWRPIAVQETLLVAFHRLLLRRTPALRKLPAWQLAFEHLAQMKAIRAAEELKRTHHLLTVDVRNAFNSVPHSVILFALRRAGVVQPTVAYIESFLAARHSSDLPAVPAGVPQGDPLSMAMFCQSLVWPVETYLGQYKVVAYADDLVIASEEAIPIDTVKSDAQSALSRIGLTVELSKCSSTQAGAISFMGTRVLKHSSFNLAQTSARRLHEHLAVLRASGLSLHDRLRLLSACVVPAVNYGPLVDDYPGPSPYADVDAQIVEEVATLLEIPEPLAKTLALTPRAKYGLGLVLPHHYYDEMHRQRQDMKAGVFRELRKKRLQDTAALRSFLPLALLGCAPLDNTQVLFIGDCLAGRYQRGRPMGTCCHCKQPFLPRHHLVCKAINGIHVARHDKILDALLACSRGRAGSVVRNPTIPVDHLQPDLVIGGGFGDLVVTVPWRLERSYALKAAKYRPLVLQGRAAHILPVVVGADGVLHHLSAAGLAFAGVDLARFMQEAAQVILWHYRLSALLYAGLRVERPVHRPAPAVSLPEPAPNEARATPPTPLTPAMWSPGTSPSVEIMADLSQHPDAAVPPPWGPAEVSSSITWGTDHPAQPDANERPDPFMCSRAPSPPPLDDDSPDDAGAPEPVHKALPSFFKRVGPPKPHAPDGFYPFKRIDTGR
>GilT_pol#LINE/Genie (a.k.a GENIE1a)gi|17865315|gb|AAL47181.1|AF433876_1 putative reverse transcriptase/endonuclease [Giardia intestinalis]
MPRHMRHSAPPRRAARGPPPRPCPGAPRPSTPHAGLRFDPAPPDVLEQSAASRQELQGFKKHSPLPPASDGPLPPVRGALSSALPHDLGHDNSPSLSDPRADGRDLDPGPGAAPPPSGTRCGQCGEELPDSAAIDAHIALHHPPTPLAAPTPSSCSSTPDLAAAALPAEPEPSASPSLSADPAYPFRCAICRAQYKTERGLKAHMGRLRHFTPLEETVHDMIGIPSGNPTEPLLQLVLATYTGLARTLPPAETLARLLTICRKADGSGRLPPSRMLLRRGLLGRAWQAVQDEASQAPRIPEPRGEQRRQIIRDLHPLPMDVSLPAVPHTLGPAPKITGKALVRELRSMKAVATGPSGLGKAHLLHLCDKAGAAEVFATALAGLLATRDWGQLKPLAEFRLKLLPKPNGKWRPIAIQETLLVAFHRAILKQTAPLKKLPSWQLAFEQMAHVKAISRAEELKASHHLLTVDVRNAFNSVPHAVIIFSLHRARVPLPTVEYVSSFLGARHCVDLAAVPAGVPQGDPLSMALFCQSIVWPAEAFLSQYELLAYADDLVVASHPSVPADTVKRDASDALAKVGLCVEQPKCASTQLGAIAFMGTRILRDGPYNLGEQATRSLLGHLETLRAADLSRHDRLRLLAACIVPSVNYGPLVDAYPGPHSYADVDAAVVAEVAGLLSIPDQQARALALTPRSNYGLGLVLPGHYHADMQQQRREMAAGTFRELRRKRIKQSAPLRSFLPLALLRGPPLNNDQVLFVGECLLGRYQKSVVLGTCSFCKQPMRPRHHLLCKAVNGIHVARHSKVLDALVACAKGRPGFVTLNAAVPVDHLQPDLIIGDGYGDLVLTVPWRVERSFALKLAKYKPLVDAGRARHILPVVLGTDGTIHPTSAAGLASAGVDVPRFLQEAALVILWHYTQSAISYSALAVPKASPVAAAVQGAPLVPASLPAPARKDPPSAPQCPADAPAAAITEAAGLCTHALPASPSVELMLSFEVSNAPSPGSYLPEPSSEAHTAESPTPTPAAAGPPVAPTVEPARKQRPPIFKYVGARAAPAREDRPYPFRKVSGTLPGGDAPRSG
>AARA8_AG_pol#LINE/I 926-4185 via tfasty with Mosqul_Aa2_pol, 7 frameshifts and 4 stopcodons. [Anopheles genus]
MNQNIEELKLLINRHDPTIITLQEVHAVPSLLSSPLNRYNWYTNIHPTIPHHSVAVGILKHISSRSSCRNFSPVPMLHSMFNLSHSINPFTIISIHxYFQQINNNLIVLGDFNAQHTTWGARPPCNRGNSIACVFETIGLEVISNQSAHVFLPxTAKAPYLTTALCHPSMAQQFTVTVSNDTLGSDHFPLLIHSSLNPQRPLLRPRWKYEEANWAAYQREIDVQSSTxxKSPSSRFTACIEYAASRSIPRTTGKPGKRCEPWWNATVAAAIKARRAALRKFRRASKNPDNFFTPIFAEEYRTANRLAKEAVRLAKKNNWDNFINEINPQLSSKEVWRRVGCLNGKNQQSSTIVLKTQDTIIAPAEVPEAFAIHFSDVSATHNYPSNFQTHKLNTESVPISFPDATEHRYNSLFTITELHWALRKCKGRSAGPDNIGYPLLQNLSVESKSTLLNIYNSIWSSGNIPNDWKSSLTIPIPKPNKPNNNVDSYRPISLLSCMGKVLERMVNRRLSQELEDRNLLSSDQHAFRSGLGTETYFAKLDDTIQKSIDQDHHIDFAIIDISKAFDRTWRHSILSQLAFWGFGGRLTNFIDNFFTDRSFRVLIGNSVSNPYPLENGVPQGAILSPTLFLISIESLFCSIPYEIKPFVYADDIILVSSSRSVSTSRQLLQKGVDKIRQWSRWTGHEISHSKSQILHICKMGFHRKLPIKLHDHIIPNVNSAKILGVTFDTKLTFIPHSNRIRKEAKTRLNLFRMLGAGQHRASRQTLLQILNSWLLPKILYGIEIVSRQRENFEKRIAPTYHTAIRLSTGAFCTSPIHSLLCESGLLPFDYIITNRLTAAAGRILEKDIKAESFINRVNAQFHTLTNNQLPHISKLTGRGGRPWYRQPPTIDWSLKDKLRAGNCSHIAGHHFTSLIQSKYQNHHHIFTDGSVLNESAGFGIFSSNNSCAIKLPDHTSIFSAEAIAMIVAAQEGICLNKPNIIFTDSASVLAALEHGNIRDPHIQLLDQLDNSPVITFCWIPGHSGISGNEKADQLANQGRLRPPENNTTIARRDFNKWSKTIVDEKWNLTWHRKQNSFFEPSNHHNSLER
>Ag-I-2_gag#LINE/I 308-1606 [Anopheles gambiae]
MGGPGTAWGEYPTTPPNIRGRQAPIWMDGEDRLGELLYLVLSPNEKSVLPKNPFIIEKSLTNHAGNIEPCKPIDKGSKYLVKTRSRAQFEKLQSLTKLIDGTSVNIIAHPYLNSVQCVIVCNSLEGLSDDDILSEMKEQKVVSVKRFLRKENGEIKPTNSFLLKIDAVQVPHEIRVGCLVVKTRTYYPRPMICTQCLIIGHTKNRCNHETCCANCGEKEHGVCSSPIKCKNCSGSHVSLSRSCPTYIDEQMIIKIKIDNSISYTEAKSVFENKRAHSVNERIQNAQQESVKDQIIADLKKKVAQLEEKMDIFLKANDKLQKDNDKLKHMYLQTIKPKTNTNTTSEPIDSSDNENTAPTRSHAHIVNLASNLNTQIDTDNGDNAYDKPIQKRKVDSYSSTDEQHSDKTIPNTDENSSEFVKPKTTRRPKNRKTD
>Ag-I-2_pol#LINE/I 1702-5316 [Anopheles gambiae]
ISPYIISWNIRGMNKNIDELKILINKHNPSFIALQETNHKPNTLHHSPLNNYTWRFHNKPTLQHSVCLGVRKNISHTQLNISSDLPLIAISTKVPFDITIVSAYFPNKMHPTNELSLYLTQTLNQINGPILLVGDLNASNTYWSNTRTNTRGKILHNLFDLNNLQVIKNSSPTRISPSDGTGSCIDHCVVSSCSTEQFSLVVEEDLHGSDHFPILIFDKHGDTRPKLRPRWKYNEADWSSYRFLIDRAIDGSALLSVDSFCSIILMAAELSIPRTSGKIPKKSVPWWNDSVEKAITARRKALRKLRKASTISNNPNTSYLALKYQEANQIAKNEIEKAKKVSWEKFVTSIDPSLSCKEVWSMVKNLTGNSQFSFPTLLNNNEPITSPSCIAEHFAQHFYEASATSKYSATFIQRHKSKTISSISFVDTNNQSYNKPFSTEELIWALRKCRGNSAGIDDIGYPLLKQLPERALHCLLEIYNNIWRTGEIPNNWKTSLIVPIPKAEKDSLSVDSYRPISLLCCMSKVLERLVNRRLIQELESRNLLSDKQHAYRIGRGTETYFACLENVLTEAKNKNYHTDCAVVDLSKAFDRTWRPAILEQLKKWGFGGSLPRFIKNFLTDRTCKVLIGSYTSNIKVLENGVPQGAILSPTLFLISMESLLQTIPTNIDTFIYADDIILITSDKSETKNRTKLQKALNKLHHWCCLTGHDLSTTKSKILHICNKSHKRTLKPIKIKYDIIPNARAVKILGVIIDSRLKFRQHLLYVKKMIKSRLNILHMLGCGNKRSARRTLLTIFNSWFVPKLLYGIEFITMGDANFGCKLAPMYHSALKKITGAFITSPNTAVLCESGQLPLDHVVVLKIVNLAGRLIEKGIEANSFVDRANKVLKQLTGHSMPNIARLTSCSTRPWYDKIPTIDWTLQKLSNHEQQIVQNYQMLIANKYKIYNKIYTDGSVYNSSAGCGITSPNARCSIKLPENTSIFSAEAIAIMIATEEATVNDRPNVIFTDSASVLKALEKGSLRNPYIQTIESLSKDRSIEFCWIPGHKGIAGNEVADRLANEGRMIKDHVDGTISRSDASLWWKGVINQSWQNIWNKSPITNLKKIKQTTAPWNDPLDHSDQRVVTRLRIGHTRLTHTYKLKKESPLICPFCGCDTTVEHILINCFGYSAERQKHRLGDHLDIVLSNNYKEIEKLLNFLKETNLYKQV
>CiI_gag#LINE/I 276-1499 [Ciona intestinalis]
MEMDVSAISESATIGNKSLDTEARGIKRPRDGCMSSDLHNERQELKVILHGVEKQLRAFSPLLINKLIIASIGEYRDIKVLRSGDLLLXCVNNGQRVKALALKCLQNETTSIDICVQAYKPSTGCKCAXKXVPRDLTDDEIASSLXDFGVVFAKRFFVKRDGNPTATTSVLLQLTTNNFPQYLTIGYIRFXTVAYSPPPLRCFNCNRFGHISKFCRSKIRCAKCGGXHEYKNCSSGTRCCNCHGNHSAAYKGCPKYKREIKIKQYIVDDNLSYXDAXTKLNLAQAPAVRKSVHEVSYSRNDFPPLQSISLPQIVSTSNQPSPNHIRTSVPKSQPXSNDDRSIIVTAXTLSRFMKDMIALITTALVNNDATNLCLDVQNTCKAYFGEISXKIQHTYSNTMEPKQSHSI
>CiI_pol#LINE/I 1496-5233  [Ciona intestinalis]
MKNKNLIIWHWNCRSIYRKLPELKQFVYNGNNRPDLICLQETHLTPKYKVSLPGYSFIRKDRLDRRGGGVAIWIKDXLSFTNVNLRNVHKDVEHIAVSXSGITVVNIYIPPAANIHESHFLDLLGALKNXAIIVGDFNAHHSMWKSSXCNTIGAGIVDFLQASQLVLLNRDTHTRVSMNPNDRSSGSLLDLTXATCDIAGRTFVNVSDNLFGSDHLLVEVTLNWIVERSTNFAPRWCLSKADWEAYKTMCNNLIKQDLVSNDVHEFCDGLSNAVVKAANATIPKTKPSRRNPVPWWDDECKAAIQAKNKAWQAFKIXYSSTDAVEFKRRRAIARKLIIFKKQQSWKKFCNSLSGCTKLTPVWNMAKSMFGNRNMSVKPXFTAXDGNQRDPGINSSNYLAAHFQRSIGSNCNYSANFREGRKRAIDLAIPQXKGLPSDNXPSPLNKAFTIAELEQCIRSIAHKKNTSPGIDGIPYQMLVQLPASSLTILLQLINNIWISGTIPSNWKHSVVIPLLKPGKPKNTASSYRPISLTSSMCKIMERLVLRRLNWFLEKENVIHKSQSGFKSRRSTTDHILHLHNDVQCAMANRSSVLCVFLDIEKAYDMVWNEGLIYKLHAIGITGRMLHFISSFLSNRTFQVKLNNELSDIFTMENGVPQGSVLSPILFNIMINDLSNQLPVTSKHALYADDCAIWVESKQLKCLKTKIQYALNVINVWSQQWGXKFSHTKTKALLFTNKRKLPDMKITLYGNSITYVTEFKYLGVIFDKRLTYKSHITYIRXKCLRRINLLHILCRSKWGAQKSALLAIYRASIRPVIEYGIEAYFSASSSNRSVIQTVQNKCLRLATGSMISTPIVCLQALCQEPPVYIRYQNACLKYKLKLLSFPPNRHNSSTLLRASTSESSFLQVTEEFPTETPVGLIQPFTSPMWEISEEFCDTSLAPLVDKDISNERKQSLFVERIATYYQGYTQIYCDGSKQESGCGCSFIIPSEGYTSSSSLHKSYSAYSCELYAIMMALKHVNSKETHNSYLIICDCLNAITSIAQRRHXKNFILNEILELIFNILNRQMNIKILWVPSHCGIPGNEESDQNAKQSAKTNHCDVSTTALTDCIYTSQVNLRTKFCEYYVQNNQNTAMKNIFPKLPSNDDLKQMDSRIEEVIYSRLLTGHNRLNGHLNRIGLHENGQCPRCNVNETAEHLLISCINTANVTAMLKTLCSEMKLSYNFNTLLTDNALIKHTISFFRALNRL
>I-1_AC_pol#LINE/I 2-4351 [Aplysia californica]
GANDEPARWCSRQLLPKDVSLPTDKPRRQLQNASTHLEHQDLNNPPGFFLGGQHNPAWLARLLILAGDVEQNPGPRWPCGVCGDSVPAKAVSARCQECLLWIHLQCSDLTRQQMLSLPSTKKGRRITAEWTCPSCTIGAAQHPLRAATQPVYTPPTQLDPNRPMTRQRHVRQLRRKNRCTDSNARNHERTRCMKKENNRALNILQWNIRGLRSAKIELLRHIDTNHPDIICLQETWLSRNIDICVPGYSIERSDRDDGNNGGGVATLIKDGITYHRFHDGVVANPDSTTEFVGTLLYLPGRTLKVVNLYIPPRHKGNFVPHVLKTDANTIIVGDFNCHHPSWDPYVDQCATGTEIDDWALDNDMIALNDGCETRIDPSSMLKSVPDISFCHVSQVAYVSWKTSDTLVSDHKAIEIKLCRHSAPTRRSKAKWSFKKADWSLFNAHMETETLANDMPNMTDATKLNTCLTEAILKAAKQSIPKGARKLPKPFWNEEADKLIEEKVQLRKKAMATKTREDIGNYQEASKRTTSRLNEMKRDCWRNFTSEMSLSTDPQQVFRVINAISGKKTPSTGSALTENNKTLKGDRSKAEAFCREYASVSRLKLDKADKHRHYQLNEKLKLLPIDQNTGYDSLLTMAELTVCIGKLKNGKSPGLDGVTNEMIKHLGPIANSALLRLFNLSWEMAIVPNSWRRAKIIPIPKKNKPAGKIGSYRPISLTSCLAKLMETLVKNRLMYFLESNNLLSNNQSGFRKLRSTEDQVLCLTQHISDGFQARPKMKRTVLALVDFSRAFDKVWRTRLMEKMIEKSTPSRITQWIGSFLRDRYACVEHGNATSRLRRFEQGVPQGSVLSPTLFLVFIDDIEAGLPETVKTGLYADDYTIYATNEDINQAENSVQAAINLLEQWAKQNKMEISTEKTECTLFTTSTHEAKRKPALSLKGAPITFNSNPTLLGVTLDRTLSSNAHIQNLELKLSSRLRPLKALTGTTWGASRECIKPIYYATCRSAIDYCAPAYMPLAKPSNLQKLERKQNEAARIITGCSRDTRVDSLLIEADILPLRHRADALTAISFEKSMRLPTTNQRKASATKSVPTRTGKSNWRKHAQNLVAETELDTYPREELVVLPPTQPWKAASYNVTFSTDLVADCKRANEPAVRKAAAEATIRSLPLPDVEVWTDGSAEHGTEYGGSGILIKTGDTELDQRVPAGRYCSSYRAELVALDTALDMLVALHTAGSLPNSARIHVYTDSRSAVMRLSYGPTNQSEKVACSIWQHLHTLCQRSECSIHLQWIPGHAGLAGNEEVDSIAKEATALTQIDTPIDFSTAKAVIHRSTRAKWKREAKPKLPFAQPPSFQLEASLRRQDRRLLSQMRTGGKSPKLRSYLHKIAPADNPDPSCRACKEEDETMDHVFLRCPASYRARTRLLGHFSNPLSALFKDPRASVEFLRAVGIADRL
>I-1_CQ_pol#LINE/I 3-3299  [Culex quinquefasciatus]
GQSNFATELQKLIDQLESPFLILGDFNAHDPLWGSLREDGRGKAIRQAAETNNIIVMNDGSHTYHRGTTNSCIDISLCSQSLINTLTWCIHTDTHGSDHNPIEIHACGLSPSTTRRRRWRYEDANWNDYELEIERRLEADREYTISEITQSILKAAEASIPRTSGKPGRRSVYWWNKEVEDAIKTRRKALRKLKKLSNESPLRDDALNMFRIARNHARKVMEESKKKSWEEFLDGISNQTSCTEMWRRVNALSGKRRTRGLSMEVGGSLTDNPALIAQEIGQYFQKLSATEGYSSKFQRLKSTAEENPVSFQIDASNENEDYNKCFSMDELLRALDNAHSKSSGPDDVGYPMLKHLPYLAKKSLLNAINKLWLSGSFPEEWRKSIVIPIPKKGQNASSPTGYRPISLTSCIAKVAERMVNRRLTTVLEENNLLIDQQHAFRKGRGSGTYFARLGDILDDARTQGHHIDLAALDISKAYNQTXRTGVLRQLQDWGFNGSLAMFLKXXLSDRTFQVAIGNTLSDLFVEENGVPQGSVLAVTAFLIGMNNVSLDLPKNTHILLFADDILLITHGPTFARNRIKMQAAVRAVGKWADSVGFKIASEKCAILHSCSTRHHHWKRPIVLNGVNFPNREKIKILGVTLDRNLNYNQHFREVKESCRSRIQLIRTISSRHKTSNRKTIIQVGNSIITSKLVYGIELTCAAFSALVNTLTPVYNEIVRRASGHLKSSPILSIMIESGNLPFPLKAALILAKRTTSVMEKIPEESSTLLRKTNEILREKIGSSLPEVAKLPRVQERRWDDVKPKIDWKIHHKIKPTDTAAQKRAVFKQRVEQKYQRHQHIYTDGSVSRHGVGMGAYSVHWSISKKIDNKCSIFTAETAALIIAVDMTQEDRIYETVIFTDSASALLNVESGKSKNALIQTLESKLENRTDITFCWVPSHCGILGNEKADKLAGEGYRAEAWITPLPKQDVNRWINTQLELVWENQWHITRDVFTRKIKGTTKSWDDRGHRTEQRIMSRLRIGHTRLTHRHLMGLGPREMCFTCGVPITVEHILVDCPSYTAQRQENLLSNSIREILGHEPESEQRLLKFLRETHLYETI
>I-1_NVi#LINE/I 1890-5805 via tfasty with Nimbus_pol, 5 frameshifts and 1 stopcodon. [Nasonia vitripennis]
VNIDLKEIKILQWNCHSLKSKLPIFRNSIEEYDIIALQETWLDELSNPKIPNYSIIRKDRKNSYPSGGVAIIIRNNIPFKIIENIYYSEKTMETIAISIPLIQHNNDTNEENSLLIASVYRNPAKQTSINEWNSLFNSIKNYKNIYIGGDFNAHHFSWGSSKICNSGEFLVESLLDNNLHILNDGTHTYYTSKTITLPNNSVVQKIISSPLDLTLISTNLLHKTTWKIQEDNMYSDHYPILCTISLEIETIPFNSTHKISHKNVNWKLFSTLLKNYFEKNHQTIENMTIDEQYNFLINLCTTSIIQLNTKNNSKKTYENQALFSGDIFNTSPTELISQYHPSLVKTFNKRPIKAPWWNQVCTELARERRLASFKLLKNPTQENLDDLKQIEKSTRKTIKQNKKDSFREHVNEIFTLDTDSKTIWNFIQSYKNITNIKPEYAPNDIEILENINQFIEEFTSPAQSNNTDDDQYSIEPNNNNPYQELDAPFSPIELNLAIKEVKKQSSPGLDKVDYEMIKNTPDCFKELLLKLIHFYYTNCNSPISWNKFLIILLPKDSKKNYRPISLASCLLKLTEKMINTRIHFFVEKNDLIPDTQNGFRKAKSCHHALAYILTDIHLATHKNLYTLCVLIDIKSAFDNVCPKILDKILKDLGIPYKTRSFIYKLISNKQLFFKIGNKLQDHIKKNGVPQGSVLSPILYNLYVSLLKKILPNDIFLVQYADDNLIYCIHQDIPTAIEKLQQALVTFNAYFENLKLQISPQKTKFIIFSNTNMQTNGNHSIEFNDAVIKESKSVKYLGMILDNTLSWNEHAEHIIAKSTKQLNILKFLRGTxWGGHPKVLKQIYLSLIRSSLEYGLFLTHIKNSNRRSKIQKIQNQAIRLALGYRRSTPINVMHLESKIPYFNDRIRYLSDNFILKLIAHDTPLKQKIENLSITIANNDRLNIKNNFPIIRSYNEIKSLVQNKIQRHLHPIPYDYTYEAIVEQPDINVTSGLHIKKSANPPQEFKDNHSDTIFTDASKMKNQEYTGLAMFMASNNQAYQFKIHTEASIFTAEGLAIFLSLNNIINSNFKRAYIFTYSLSILSALKDYTPNKSRNTSHIILDIKTLLNKCSQENIKVTLIWIPAHINIKYNETVDSLAKNAIKDGTNTIYLLPFSDFGDKIKQKLILNTQQLITDQGTYKGTHYFDHYYKDNEAKPWFTKINLPREHITTINRIRPNHYNLSASLFRKNIIQSPTCECGYESENIDHILWDCPRFSNQRYSLINKLNHYHSKKKKNTPKDTTSLLKNPNEKPARIITEYLKRCNLQI
>I-1_NVi_gag#LINE/I 273-1874 [Nasonia vitripennis]
MTDESDGEDHIMQTSPIKTFPEERTKKVDDLRKRKTTEQSQYKPEERNSTKRAHITQQDNNKDKTSQETNAQQHGNDQTDVLLYTEDIPPPYKIIIVPTTETKTSENTSESSTKSIRLEPIHIAKTIIPILPNNSIDEIKKSGKNRVTVITHNRKVANKILTLEILKEKKLTPFIPSSYIYRRGVIKHVPTDITENEIKNNIKLTSPVANLTIQSVKRFYRYNKSESGTTSTPTTTIMITFKGQVMPQYADLYRIKHSVEAYIPTVKLCANCYRHGHTKAFCKSKTRCIYCGETDHDSTLCTMKNETLKCINCTENHLPTDRNCKIRIREQQIITMATKRNISVQEAKQNYNELILNKKRIRFSEFPELSIATTPDELDYASQIYNTPRRRLFTDTLKTSRPVNSRPLTNNSPKKLHNNVINKENNQLTYQHKNILISPNGDYKLNYTATKQNQGNSPNNNNYLTTTPNLSTLASPLLTLNEKGFLLDKKISLTQNDIVNYLNNDPNFYENILNILQENSYQNSQNTYIENNSL
>I-1_SP_gag#LINE/I 2-844 Fragment [Strongylocentrotus purpuratus]
DKVVHAKRFKKRINGELKDTRSVLLTFERKEIPTELIFAFERYKVYEYVPQVPRCFKCQRFGHVADGCHSKARCVRCGGEHAFNECQNKETPKCCRCEQNHSAAYLGCVKYKDAVKIHAITQSEKISYATATKRFHETKNPVQTQAKQVVFREAERISKPSQRNERAKPQNNEKVPSGQAEQAVSSETERNSKPAQRNERVKFNERDQNPESDRGHREKTEEKDPQITVNSVDFLAFIVFVINNMEKETSNSNRIRLVVEAAHCCLGVQTIHPEMIHERLK
>I-1_SP_pol#LINE/I 2083-5832 via tfasty with Nimb-2_DR_pol, 1 stopcodon. [Strongylocentrotus purpuratus]
MRIFRYIWRKKELHNQLSEKQKGSAISEEEKPSIICLQETWYDDYNIISFPDYTLITKNRKNRRGGLAFYIHKSVTFQVIKTPDDQEYQIIDIFMHNHIFSLVNFYNPCKKIAAPALDEMILYCKNQVIICGDFNSHNPIWGSKDIDANGRTVEECMHKHDMVLLNEGTSTRIDPHTGRFSCLDLTFMTKELAKLSGWSVQKQNFGSDHFLISFDLPFVSKNLPKEGKFEKNEDTRLFARSSLNKVDWKLYKMEIKNQMKDCKKEYQEADLQGKLDILNGIILISIDKLTKKVSTEYKARQPVHWWTKECTESVKIRNAAKNRFMYKTHLYEDFQIYMEKKRITQSVIRKAKREYWRDYCRKFNRTADIGAVWKKIKDKQKSTNQSIPNLIMEAGKVIGKTATEKANMFLNVFNSLDLAVGKEEIVKRKESETKLLEIINNMQNHEENVLNEDFRLSELNSALLELKNTAPGKDGIHSKMISNLPEEIIKMILELYNGIWNRGILPRQWTEAIQIPILKKGKDASNPSSYRPISLTPTLCKLMERLVKNRLSWYIEREDVITPIQSGFMKNRSTTDHLIKLETDIQKGMANKEHTVVIFLDLEKAYDRVWRQGIVYELYNQGFTGKILKWIYAFMSNRVNRVRVGNYISEQKNCNIGIPQGSVISPLIFNFMINDLRRIQDTVEIALYADDICIWFSHRNMTHVQKKLQAALGLIEKWCDRWGMHLSSSKSRAVVFGRKEKKNIDLQIYSQSIQLEKEYKFLGVWFDSRLTWSKHINEISIRCKKRLNLMRCIAGTKWGNNSEILHYDYKGLIRSVLDYGSEAYDGASNSLKKKLDTIQFQALKIITGGIHLTSLQALQVECGEMPLQLRRNMFIDKYHYYLHAAKINHPTKKVLLPCWQYESYSWKMGQGPFVKRLRNLEIGNIEKLTECMTVKPYWHYKMPSISTEIKDFVSKKFSSSIESKNYAVEVIKTKWNYCLRIYTDASKHQEGYTGAAYYIPKLSLSKCFKTSNISIMRPELVAILMALEWIDEYHPIAVVILTDSASALEAIKNMKESSIIVEIYEKLFGIDVNLEWVPAHCGLPGNERADLLAKQAxKKQNTDIIVNKNKSEFVSESDIFYKSMWQSLWDKAENGRHLYSINKNVNNVFKIKGLNRKDERLIHQFRLGKCNLNYYKYLIRKHDTGLCVECQTIETIEHFLLSCPKYERQRRRMYRALKTQNPNLGQLLGNEEYIGKVVAFLKGSGRYNEL
>I-2_AC_pol#LINE/I 368-4180 [Aplysia californica]
MTLEVGNVRYGARPVRTHQAGAVPGPKPRRGPPQRLEGLPSSWSARRRGRKATGNTNTKQVKKSLNIMHWNAEGISNKKTELENFLKDNEIHISCIQETHLQEEASFKVRGYQCFRNDRQGRKKGGVLTLVRNNLNTVEIKKYTGEAEYIHNRITTSRGNLDLVNYYCPNDKNLVLETIEVPDTDFIIAGDFNSQSQSWGYNRLDRRGEEIEAWQDENHLLLVNDPLDQPTFYSRAWHSTTTPDLALCTENLHRHLSRKVETQLGGSDHRPVLLTIVESLPEDSPKRPRWNYKKADWRLFSIRTNELTKNIAVFDKNINNAITEFNENILKSAKETIPRGVRKNYTPYWTPELQKTHNDLIKAREEAETHPGIENNNKLQRCKAHYLKTKLECTRKSWRDKTHKLNLEKDTTKLWRLVKGLNDEGNKSAKITLEVEGEMEMEKRAAHTFVKAYAQESNIKIPRERQKEVRQEERRKRSTNNIPEAMEKDITMEELKKAINQLKQRKSPGPDEITNEMLQHLGNTALQTLLDIFNLSWKIGQVPQCWKEATMIPILKPGKSKAQPLSYRPISLTSCVCKTMERIIACRMQWYLEAQHIIVPEQAGFRQFRSTEDQTTYLSQVIEDSFQAQKVMLATFVDLQKAFDKVWKEGLLVKLLRSGIQGNMYQWTKSYLHNRRARVLVDGYQGRKMLLRQGVPQGGVMSPLLFILFINDLMNELPKGIHAALYADDLVLWCSEEFVTTATYRMQLALDKLTTWTKTWCVTVNKEKSSATLFTLSQAEPKHLTLDKTPLKFENQQKYLGIIFDKRLTWKQHIQNAENKARKKLNIMRKLAGTQWGANEKTLRQVYLGAIRPHLEYGSSAWMTAAQTHKYTLEKVQNQALRIITGAMRSTPIEKMEQTTSIVALQRRWECKALIQYTKATAMEDHILHTRTARSNTARLKRSNFIKESRKIQRSLQDHLPATVNMLNHTPEAPSWEKKNTNISIHTSIPMFTTKDDHSDLSKKSLTLSMLEERYPREAWIRIYTDGSATDAVKRGGAGVYVQFPNGRRQAEAVPTGRHCTNYRAETEALVHAANIIKNVVDPQSQVVFLTDAMSVLQAITSGKLPRLRKEIEDIPCLRIMLQWIPSHCGVLGNEQADRMAKLGAQKEQPDNSVNYTEIKTIINTLFKAPQTPDGYHELSRQEQVIIFRLRTQHTRLRQHMYKCFKLVQSPKCQCGEADQTVEHILQHCKTHRALRQETWPTPLTLQEKLYGPPDELTRTAQFMTDTGLQV
>I-2_CQ_pol#LINE/I 201-3956  [Culex quinquefasciatus]
MAIEPSTESSQDALXPNDDNQNPNLTNQQAVSSTSRPALTDGAADDTXTTTPTTTAIAVQWNLRGMAARTNELQQLLEQHRPVVVALQEIKTKKKKDKNKLDRRRYDWXFCFXPSDGYSNGVALGIXKDVPHRYIDVQGPLQVVAARVEWPVLATFVSIYICREDGKTEIEDKLAQLVAQLPAPVVLLGDFNAHSPLWGGNHIDQRGKAIECLLGKHNFIILNDGSHTRVDPSNGRSSAIDLSIVSDTIAPELVWSVDVDTRESDHYPIFIHSVDHTRAKRSRRPRWKYDSADWTKFANEVQKPNPESAQEIEEAIIAAAEVSIPRTSTRVGRKAVHWWTNEVEEAVKDRRKKLRRLRKLGDDHPNKIQALNEFKLARNTARQIVEKAKADSWAAFVSGIAPSSGTTEIWRRVNVFRNGPKVNIHQLVINGKLSDEPGEVAETLADYFAEVSAARQSTHRRAVPDQPTPTFEGGETSKYNETFSMEELDWAIRKSKGLSAGVDNIGYPMIRNLPHLTKTRLLELYNRIWEDGNIPDRWKEGIVVPIPKAGKDRKTVGNQRPITLVSCLGKIMERMVNRRLITTLEELGVFGDNQHGFRRGKGVDTYLAELESEIQNWIDKRQHGELALLDLAKAYDTAERAPILQNLHRWGIRGRMGCFVANFLKNRTFRVAIGSFLSTLRTMESGVPQGTILAVTLFLVRMTEVRRYIPKGVSLKLYADDILLVVHGRSAVYVRKKIQEAISSVETWTQLVGFELASTKSNVIHICRRNRHEERNPVTTDAGPIELVKYARLLGTGFDGRFNFKQHISDTKKMLESRNRVLRVIGGHRISGARKTLLDVHRAIVQSRLFYAWGIVSSATPAAIRPLGPAHVAGIRNASGAFRTSPVKSIYAEAGQLPFDYAATEATVTKAARLEAGGTISPQHPLGVRARREFQRITQEEMPEIARKLRIGDRPWHAEKPKVDWEMTAYVRAGETSQKVAAAFGIVREKYGEHRQIFTDGSKDEDFTGCGFVDGTEQTAIRLPAQCSIFSAESFAILKALERIPEGDGETTVIYTDSASVAEAVENGVSHHPWVQAIEREMRRTGAILCWVPGHCGIIGNERADETARSAKRLDRINLPVPAQDFLSWAKNLIRLAWEREWHGERDLFLRRVKPNTLPGSDRDNQEEQRALTRLRIGHTRLTHEGLFRGERVTCDTCGVPMTVEHILCTCRKFDGLRDDGAQSVYGALCNDPEAEKTLLRYLKNTKLLTEI
>I-2_DR_gag#LINE/I 462-1673 [Danio rerio]
MANKQNPKRKLSDQDLDCNFGNGISLLPKSENWQRFILLESLQSDMPLSKLSPFAIQKGISGIAGTVKDCKKLRSGQILVECSKKVQAENLLRANMLAGVAMKTFHHPTLNHSKGVIRTRELEDMEETEITTELMTQDVIHVKRITIRREDRLIKTGTYILTFSRPLPPEKIQIGYLSVNVDIFTPNPLRCFSCQKFGHGSISCKNRPTCVNCGEEKHGDQCKKTPKCSNCAGEHPSSSKDCPTWIKEKEIQKIKCTKKVSYLEARKLVENSSFFKLEKTFAAVMKPKLQSVGVQTDLTWINEKFEEIKSQTPVNTKCTDHQSQTVLHQTQVNHKEHSSTGQHSSKNKNDKKPNPQKEKTSQEYKEMKTSSSKDIEMSDDKKPRSRSTSPKTKTKGHSYVLPT
>I-2_DR_pol#LINE/I 1688-5349 via tfasty with I-1_DR_pol, 1 frameshift. [Danio rerio]
IIQWNCRGIRANFSELQRLACIYNPLAFCLQETHLTPESNISLKHFTCLNAYGPNLQRPCGGTSILLRHDVIHSNVDINTNLQVVAVRITLQNTITLCSVYIPPEATVSHQDLENLVEQIPPPFILMGDFNAHNPLWGGKQLDAKGKKMEKLINENDLCLLNDGSYTYLHPGHGSFSAIDLTICDATLATDFSWYVCDDLCGSDHFPLIITKTAADTQQRPQKWKLEKANWYSFQALCYERLDGKQQDKENPIKWFTEKIIEIADESVPKTSTKQSKRRNPWFDDQCKELIKARKKAVRCFQKHPTSENLIRIKICRAQARRYIREAKRQSWNKFVSSLTINTPSKKIWDAIRKMKGREGPQLKHIDNHGTLLTSKHDIANILAETFAKNSSTENYQPNFQKIRTNQETIKLNFISQNTEIYNQPFSMEELLNSLKCCHDTAVGPDKVHYQFLKHLPQLSLCLLLDNFNEIWKSGNIPPSWQEATIIPIPKPGKEHKDPNNYRPIALTSCVCKTMERMVNNRLVWKLESDHQISDFQCGFRRGRCTLDHLINLESYIRNGFIKKEHVVAVFFDLEKAYDTTWKYGILKDLYKMGFRGNLPIFISNFLSNRTFRVQVGTTMSDPQIQQQGVPQGSILSVTLFMVKINSVTDVIGRNMMCSLYVDDICICYRGKNMNIIERQLQLCINKVSNWSTENGFKFSKTKTVCMHFCLLRSLHHDPELFLDEEPIKIVKETKFLGLHFDCKMTFIPHIKALKNKCLKNLDLIKVLAKTKWGADSTVLMRLYRLLVRSRLDYGSIIYSSARKSYLQMLDPVHHQGLRLALGAFRTSPAQSLYTEANEPPLHIRRLELSLQYALKIKTNQHNPAFKPIFQPQYLDLYEERPSYIQPFGVRIRTHIKNLNVNLDSIHQTLICPVPPWRLNKLQVNLDLSKHKKADTFPHTYQQAVAGIRHFYPTHNPIYTDGSKKDGHVSAAIVMGQSHHGIRIPDQSSIFTAEAKALFLALEHIENAEGHNFIIFSDSKSCLLALNSFKLEHPIIIDIFIKVNELQRKFYNIVFCWIPGHTGLLGNEQADKAAKTALTGKLMECKIPPSDLKPLIKGYILNKWQSEWDQCPENKLFEIQPEIGKKSNLFFKSRHDEIVYRRCRIGHTRLTHEHLLKGEEPPKCLYCNRNQTVKHILVECPIFNVIRKQYLSGETLKEIFLNVNPSKVVEFLSKGNLKKLF
>I-2_NVi_gag#LINE/I 237-2246 [Nasonia vitripennis]
MGDHPQNLPRVLRPPRTYATSGLKLNNRHNTRVTTKESIGENKNGLNPKRNSLIQARLNHTKSSNNLDQINTTAKGDDLKDTKMETEDISLEEIEKIIHTPNDNKTLIQSQPITETNTSSLDQRNHESQNTSHENSKADSERKRPAEFRSPESSSPNNQRFKKKPYNDNARKNLFNDHSLPTDPNDNRNDKDLPSEYDINIQGPYKIYLQSIDNDRLDAIKIAKSLIPKIEIKDSLHEIKQLSYNKVCVIAKYRNIANLILNLTDWKDLKIRAFIPNHLLSKQGIIKGIPVEITDDELKQFIELDSPFGPLQITHTRRFTKKIYNKSTDKVDILPTKTVQITVKGQFLPAEAKVLKVIYPIETYYPQVRQCYRCFRFGHIKNNCKAPNERCIRCGEPKHTDGNECPYINTQPTCLHCKQNHLPIDKSCPAKIEEQNLKNMATDQNITIAELKNQLRKXPAYNKSHFPTIGNSSQPTQAQTDTLKNTMYADKVKSYSKQPRNHPTQPSVEPTDRGSTQSVGHNHQLTQSPSQKSKNNNFTPNFRLAKQHTDCLSYVNGNTNLKIKPINHRMTAKDFFDHSYLQDTHDNLNFTPIEEKINYITEIINDLPITEIRKILRLTENRINHREQQLKQSNVLLTQVQNTYNDAVNETDNLSKKNDNTNEESSSTEL
>I-2_NVi_pol#LINE/I 2337-5591 [Nasonia vitripennis]
MEDTIQGNPNKCKIKNNLKILQWNCRSISNKTDFIKNIADNYDIILLSETWLSDQKKFTIKNFNMVRRDRAENNNNLNKEHGGGVCILVKSXLIFEEYKPLYNSPESLETVAVTVHLNNEEEILISSIYRVPGKVTTAEEWYKFFQSIDKIKYKIIGGDFNAHNLLWGSTNNCKTGENLLEIIDDKDLIILNDGSMTYSKVVNNNITFSAIDLTIVSSDLFLQSHWKTLDDKMYSDHYLIEIEINKDIKICPTASSHKIKTKSINWTNFNLLVEAIVDTQYPIDQFHEFSNKPIDEKYNILMNILISAINELKPKPKKSHNKEKINEINNPSDDNSTMNNHPCYKVYSPLITDNRTQFIKNKLKASHIPQSIKPPWWNEEAEEINNTRKNLEKSLKQNPSLEQLKELKDYEIESKFKLKEIKLNSFKKYTETKLSREANINEVWETIHKFNEKKRNNPIYLDSETINNMHQFISDFCPQTASYNQPPGSIENIEAEINSDIDSPFNLKELTIAIESCNKKSSPGLDQIDNIMLNNTPNNYRALLLHTINDIIASGRFPREWKEFLVMLLPKKEKNKFRPITLAPCMLKLAEKLIQTRLIYYLESNALLPDSQNGFRKAKSCATSIAYLIAQIHKAFIENSHIITLLIDIKSAFDMVNPNMLQNILEDLKIPIKTRTFIFNLMTNRNLYFEINHKLVGPFYRHIGVPQGCVLSPTLYLIYVIYLNRHINPKNNIIQFADDTIIFTNNKSVEEGLXTLQNNTSEIINFFQSIGLDIAPNKTQLIIFSNKNIDPNISITINGHKIKNEQAVKYLGVWLDSKLNWNTHAQNLIEKIQKTINIIKVLRTTWWGGHPQVLLNVYKGLVRSITDYNCFCINIKNPKLREKINKLQYKAIRLALGYRNSTPINVMLAESKEVPITTRTEYLADKLAVKIISIESDRLSNMLCELFVLARNKNKIFTVSSFPLFKSFIHYFYHRGHFIKKFNLPLPYPYKLETMLNDKEDEIISIKEGSIIQKSENPNTAFEEMFYNNPSEETVDFFTDGSKTEDKNHTGAAIYSPYNNLEKKFKFNKIASIFTAEAFAIFLKN
>I-3B_CQ_gag#LINE/I 600-2264  [Culex quinquefasciatus]
MDPTESDHEESDFDSTLEGDEDVEMEDSVPGVPSNTTNRDHFLKDEDAGGKGGSSXGSKRTKRKRPKSDPNPVPPQPPIPPLTPDPIPPLTPDPIPPLTPEPIPPNPDPIPPKTPVPNPDPNPPPPLNPHSQKPIPRPRQYQEGSQTEWVVFFRPKQKPLNFVQITKDLQKHYPGVVECTKLNKSKLRVIVNSAVQANQIVTDLRFSIEYRVWIPAHKVEIDGVVTDDGLSLVDLSRAVGRFKNPKLPAVEVLECRQLGNVTTEGGQKKFIPSASFRVTFAGSALPDYIELYKLRLPVRLYVPRVMSCENCQQLGHTKTYCSNKSKCSKCAGPHKDVDCQKQAEKCLLCGGEPHKTRQCPKYKEREDKMKRSLRERSKKSFAEILSQVTHPNRFAPLADEDSGDEXSDVEVLFQRDEESDSSGPNPKRNKASKSRKAAGGKGKESDSLNFEEDFPFGPSGKPAPKPAPKPAPIPLKPLKPVPKLPKIPLKXVPQPNPITDAFKGVLXFSTIVEWLCSFVSEPTRLIIKRFEPLARHIGKQLASTMPLLSFISFDG
>I-3B_CQ_pol#LINE/I 2260-5958  [Culex quinquefasciatus]
MGNTPKTKNGISFLQWNCRSLTPKLNDFQQFAFERDCDVFALSETFLIGDETPAFRGYNIITESRAGPNRGGGVLIGVRKCHTFRKVTLPKLGGIEAVAVQARIRGLDICIVSVYVPPQVSLTRQKLWGMLELLQAPRLVLGDFNLHSTEWGSHKTDPQAYLIHELCDDFQMTLLNRDKQVTRIATPPTPTTSGTKASAIDLSLCSNSLAVLCDWNVLQDPRGSDHLPIAILVSHGPQQSTTVEMPYDLTRNIDWKQYAEAVSIGVELRXGLAPLEEYAFLANLIYDSAXQAQTKPVPGPYIRTRPPLPWWDKECTDLSAARSEAYVDFCKCGIRANFQKYRALDRRYSNTLKRKKRMYWREFVEGLPADTSMSTLWRVARAMRRGSVPNESVEKSDKWILDFAKKVCPDSVPTQPSFDVVDGSDXNPPFSMVELSIALLTGNNTAPGPDKIKFSLLKNLPDVAKQRLLNLFNTFVEQNVIPHEWRQVRVVAIQKPGKPASDHNSYRPISLLSCLRKLLEKMILDRLEPWMEREHLLSDTQYGFRRGKGTSDCLALLATGIDIARGKKQQMASVFLDIKGAFDSVSIXVLGVKLRRSGLNPTMCNFLINLLSEKHMHFVQGDLAITRISYMGLAQGSRLSPSMYNFYVSDIDDCLTGDCTLIQYADDAVVSIAAKKEVDLLEPLQDTLNNLAHWAVGKGIEFSPEKTELVVFTGKHEPPQLNLSLSGKTIEQSDHFMYMGTIFDQKGTWGKHINYLKQKCLQRTNFLRSVSGNRWGAHPSDLLRLYKTTILSVLEYGSFCFQXAAKSRLLVLQRIQYRSLRIVLGCMHSTHNMTLEVLAGVLPLRTRYYELSYRFLIRCDYRNKLVIDNFETLLNLHVESRRMLLYYDFMSSWEWSPSTTVQRTPPLTSSTLIGFDTSMKADTRGIPNHLLRGVVPSIFASKYNHVPPNNRFFTDGSKLDGCTGFGVYHESYQLFFKLKDPSSVYVAELAAVYCALRIIETMPPDHYFIFTDSFSSVEAIRSLKPTRESAFFLTEIRKTLNNLAAQSFSITVVWVRAHCSIPGNEKADLLAKKGAESGDIFERPISLQECYGFPRQRALLDWQNQWDDDTKGRWMYSIRPKVQRKAWFKGMDLTRGFIRTMSRLMSNHYSSKAHLYRINMSDTNLCDCGQGYQDIDHLVWACPDHQAHRIKLKDTLRARGRPPEIPMRDALSQLDLDVLYPIYQFLSDSKISI
>I-3_AC_gag#LINE/I 574-2112 [Aplysia californica]
MDSKKQKDPSPAPNVKKSRLAEAGAAAEPSKNSKKGKRTFTDASFLPPPKELLRQPYVAISSTKDAQRRITDLNLFKTGDALRKVLGYIPTCVQKLSCGALLVKCATEIEVTKLLDTTTFGGIQCKSEHYQKFNRSKGVVRSHELKGCSMEEIVEHCEGVVEARRITLRRGETTIETNTIVLTFESCRPPATVRASYLVLDVRPYVPNPLRCFKCQKFGHSQSRCRHAAVCPRCGKTGHPEKECKASPCCPNCHGQHTAFSKECPTWLQERAIQEYKARNGCSFQEARKVVCPPITTPVIGRSYSMATQMVTRSASNPTTDLPKPAVNRQVSVPKNTRNKKPATIPVAPPFEVPLSNSYGVLGEDGEDSSSAPSSPPHPSSIISSSSSSSSSSSSSSSSSSSTSQPIPLMECEVGLLPSPQPPPPPSQPPRSAPPPPTPPADKPLPMEEDISDPPPRPDPGKGGVCHSSKSPTRPPSNPGRQPRKHSASPARRSQSVSSKPGPLSSKSKSKNS
>I-3_AC_pol#LINE/I 2115-5783 [Aplysia californica]
MAVLQWNAGGIRPSIAELQHLQATLCPRVACIQETKFAPASTIDLRGFTAYHHIHTENQIASGGTTIYTDNHTLHRQVHLKTTLQAIAVRVTLHRPITICSVYIPPNYPLKITQLNDLKSQLPKPFILLGDFNAHSPLWGDKPIDQKGKIIENFLFQNNICLLNDKSPTYRNRATYGTSSLDLTFCTPDLVPDLEWSVLDDRTDHFPILLKNNSLQNDPIPERFNFKKADWDGFANQCSKILNPNFDHNYNKFHEKLLEICHNHIPKTKTKPRRNKIWFSWECEDAVKKKKAAYRRAVNNTTIENKILYLKARAEARRCLRESKRQSFQKYISKINSQTPLNQVFQIAKKFLGRRTDTIRHVQRPDGTTAETQVDIANTIATSLAKNSSQANYNTTFQNIKTNREKQHLNFHSNNTETYNADFTIDELTSCISDLGDTAPGPDDIHNKIIRHLPSETLTLLLHIYNDMWRSHSFPESWRLATVIPIPKPNKDHTHPSNYRPIALTSCLCKLIEKMIHRRLMWFLETTGSLSGLQCGFRKTRSTLDHLVRLETFIRETFAERGHMIAIFFDLEKAFDTTWKYGILRDLHALGIRGHLPAFIGNFLKNRSFQVRVGSSLSDPHQQEEGVPQGSILSPLLFEIKINSIVKTLQNSIDSSLYVDDFLICCRSKNPHLRSMERQLQTQLQKLETWANNNGFKFSPSKTVAVHFCRTGRRVLQPDLTLYGERIPVQDQARFLGVIFDKKLTFIPHIKDLRVRCQKALNALKILSNPEWGGDSKHLLHLYISLVRSRLDYGCQVYGSAKPHVLKILDPIQNQGLRLALGAFRTSPVESLQAEANIPPLSLRRTQLSLQYAVKQSSTPENPAHNSIFQTNPETINRFQNNEKLIKPFGLRILEDLKNLHFSKQDIQQILFPDLPPWHLTKAKVDLQLTTHNKESTNTKTFQAEYKKLIDKYPGAELIFTDGSKKDNEVGAAALSPNNTHQRRLHPEASIFTAEATAIDMALDSVENSPNKSFLILSDSLSCITSLTNYTLLHPKIVRLQQKIHTLSETGKNIMFAWIPSHVGIRGNEQVDDLAKKASSLLLGSTTNTLPQTDFRNKVKKYTSSLWESHWENQKNNKLYEIKPRLEQRNPSDLSRRDEVIFTRLRIGHTALTHKYLLQGEEKPFCVGCDTDFTIRHILTECLDFGEIRRKYYKCKKLQDIFSVVVPSRILNFIKAIGLYGEL
>I-3_CQ_gag#LINE/I 641-2359  [Culex quinquefasciatus]
MDPDEDQVEKMSESEDWDTDNEGEVDPLPGVPSNQTALELYGKDTKVVVKGTGGRKAKKRKSRLSPKPYPKPDPTSPPTQKPDPALPLNPSPLVPTNPTPIPTNPTPPIPPNTNPIPPAPTPPIPPNPNPIPPAPTPPIPPNPNPPGDKERPVQARARQYVGGSQTEWVVFFRPKQKPLNFVRITKDLHNHYPGLVQCTKLNKSKLSVIVNSAEEANQIVKDIRFCVEYRVWIPAHKVEIDGVVTDDSLSLVDLSRAVGRFKNPKLPAVEVLECRQLGNVTTEGGQKKFIPSASFRVTFAGSALPDYIELYKLRLPVRLYVPRVMSCENCQQLGHTKTYCSNKSKCSKCAGPHKDVECQKQAEKCLLCGGEPHKTRQCPKYKEREDKMKRSLKERSKKSFAEILSQANQSNRFAPLADDSGDEENEEEVLFRRDEESDSSGPNPKRNKVSKSTKAAGGKGKESDSLNFEEDFPFGPSGKPAPKPTPKPAPIPLKPLKPVPKLPKIPLKPVPQPNPITDAFKGVLPFSTIVEWLCSFVSEPTRLIIKRFEPLARHIGKQLAXTMPLLSFISFDG
>I-3_CQ_pol#LINE/I 2355-6054 via tfasty with I-1_DR_pol, 1 frameshift. [Culex quinquefasciatus]
MGNTPKTKNGISFLQWNCRSLTPKLNDFQQFAFERDCDVFALSETFLIGDETPAFRGYNIITESRAGPNRGGGVLIGVRKCHTFRKVTLPKLGGIEAVAVQARIRGLDICIVSVYVPPQVSLTRQKLWGMLELLQAPRLVLGDFNLHSTEWGSHKTDPQAYLIHELCDDFQMTLLNRDKQVTRIATPPTPTTSGTKASAIDLSLCSNSLAVLCDWTVLQDPRGSDHLPIAILVSHGPQQSTTVEMPYDLTRNIDWKQYAEAVSIGVELRAGLAPLEEYAFLANTIYDSALQAQTKPVPGPYIRTRPPLPWWDKECTDLSAARSVAYVDFCKCGSPANFQRYRALDRRYSNTLKRKKRMYWREFVEGLPADTSMSTLWRVARAMRRGSVPNESVEKSDKWILDFAKKVCPDSVPTQPSFDVVDGSDSNPPFSMVELSIALLTGNNTAPGPDKIKFSLLKNLPDVAKQRLLKLFNTFVEQNVIPHEWRQVRVVAIQKPGKPASDHNSYRPISLLSCLRKLLEKMILDRLEPWMEREHLLSDTQYGFRRGKGTSDCLALLATGIDIARGKKQQMASVFLDIKGAFDSVSIDVLGVKLRRSGLNPTMCNFLINLLSEKHMHFVQGDLAITRISYMGLAQGSRLSPSMYNFYVSDIDDCLTGDCTLIQYADDAVVSIAAKKEVDLLEPLQDTLNNLAHWAVGKGIEFSPEKTELVVFTGKHEPPQLNLSLSGKTIEQSDHFMYMGTIFDQKGTWGKHINYLKQKCLQRTNFLRSVSGNRWGAHPSDLLRLYKTTILSVLEYGSFCFQSAAKSRLLVLQRIQYRSLRIVLGCMHSTHNMTLEVLAGVLPLRTRYYELSYRFLIRCDYRNKLVIDNFETLLNLHVESRRMLLYYDFMSSWEWSPSTTVQRTPPLTSSTLIGFDTSMKADTRGIPNHLLRGVVPSIFASKYNHVPPNNRFFTDGSKLDGCTGFGVYHESYQLFFKLKDPSSVYVAELAAVYCALRIIETMPPDHYFIFTDSFSSVEAIRSLKPTRESAFFLTEIRKTLNNLAAQSFSITVVWVRAHCSIPGNEKADLLAKKGAESGDIFERPISLQECYGLPRQRALLDWQKQWDDDTKGRWMYSIRPKVQRKAWFKGMDLTRGFIRTMSRLMSNHYSSKAHLYRINMSDTNLCDCGQGYQDIDHLVWACPDHQAHRIKLKDTLRARGRPPEIPMRDALSQLDLDVLYPIYQFLSDSKISI
>I-3_DR_gag#LINE/I 404-1624 [Danio rerio]
MKNKYLNIMAKNQNTKKRILEQDLETELRTGFNFPSENENWQRFIVLESLTDDMPLTKLSPFAIHKGITGIAGTVKDIKKLRSGQILVECARKANSENLLQATTLAGITMKAFPHSTLNNSKGVIRTRELQDMDESEIALELKPIGVIDVKRIIIKKDGQMIKTGTYILTFNRPQPPEKIKLGYLSVAVDIFIPNPLRCFKCQKFGHGSAGCKNKTTCQNCGEDDHGMNCTKPPKCKNCLGDHAASSKNCPIWHKEKEIQKIKHTRKMSYPEARKIVEALPAFCLKKPYSVAVTPKTQSISCQTDLTWLFKDKPQTISNTKNSTSQKTKNELIQTGPIQDSYLEQKESKVKKKTPSTTNQQPNQDKCRTHKDDNPKDIEMTETTTSRSRSLSPKCKNKGPVPIFPT
>I-3_DR_pol#LINE/I 1597-5307 [Danio rerio]
RTCTYISHLRINNHIIQWNCRGLKTNFAELQHLNSVFNPLAYCIQETHLSPNDALTFKGFNMISICGPNIQRPSGGSAILVRNDIIHSQVVLDTQLQATAVQLTLHKTITICSIYIPPHEAVIPQELDKLISQLPTSFLLMGDFNSHNILWGDDHCDAKGRRMETFIENNDLCLLNDGTKTYLHPGHGTYTAIDLTICSADLLLDCSWRVWNDLCGSDHFPIILTFPQLDVTSRPSRWQLKKADWTTFQTXCCEKFMSATQDNQNSIEDFTQQLIAIADETIPKTSTKPQRKTNPWFNEQCKKAIETRKKAERAFNKHPTTTNFIHFKICRAQARRTLNEAKKQSWKQFVSSLTYYTPMKKIWNMIRKMKGKENGTRIQHIIKQGILQTKEMDIANTLAEAFEKNSSIENCLPAFQIIRAQQECKELNFYSDNKEVYNQPFKIKELINSLKCSHDTAIGPDKIHYQFLKHLPYSSLCLLLDEFNNIWSSGKIPASWKEATVIAIPKPGKDHTDPNNYRPIALTSCLCKTMERMINNRLVWTLEKNKQLTDYQCGFRRGKSTLDQLIRLETYIRDGFIRKEHVVAVFFDLEKAYDTTWRYGILKDLHQMGFRGKLPTFISNFLTRRNFRVQVGNSLSNTHQQELGVPQGSILSVTLFSIKINSIVEIIAPNMFCSIYVDDLCICYRGKNMNTIERQLQLNIHKINQWAVENGFKFSKTKTVCTHFCIQRSLHHDPELFINGNMIKVVKEIKFLGLLFDNKMTFIPHLKFLKNKCLKAMNIIKVLAKTNWGADLTVLLRLYRVLIRSRLDYGSIIYDSARKSYKQILNTVHHQGLRLALGAFRTSPVQSLYIEANEPSLQNRRLKLSLQYAIKLKANKNNPAYTAVFEPQFVQLYESKPKTIRPFGLRINSHLQNLNLNLDILKQIHFNSLPPWNLKMPIINMELGHQKKGVTHPNMYKQQYLDIRTQYSQHIPIFTDGSKMESNVAAAMVTGEQSHGISLPKECSIFTAEARALLLALEYIENAQQKKSIIFTDSKSCLQVMESSTNDHPLIDNILTKVHQLQNQFYHIIFCWVPGHVGLLGNERADAAAKDALKQVINKCQIPPSEMKPFINAYILNKWQKEWDALENNKLHEIQPEVSHRILRHFKNRFDQVVFTRCRIGHTRITHGFLLQGENPTQCLCCKTPITVKHILLDCPAFTDSRRTFYEMNSFKDIFDKVEPEKILEFLSCINTKNLI
>I-4_AC_gag#LINE/I 652-2208 [Aplysia californica]
MDFRAVSPCWTRWRVGSPGDEIKDKIHMDSTKNISPTPIPNKSQTGEAGATPGLGKRKKGLSGEDADNVSIWDIPKRTSLGWSPFLVISPKDEKQDTNLTTLSVFKIHKSLKHFGIYKPKYIKNLGSTDLLIQVSSSIESGKLLACTSFGGIPVCVQPHRSLNTSKGVIKSRELYGCTEEEMVQEVDGIVHARRIKIRRDGKEICTNTWILTFNTPTPPTKLDIAYLELEVRPYIPKPMRCFNCQRFGHTQLRCRRGAACPRCGKEGHSGETCSADPWCPNCRQGGHSASSTECPRWCQEKAILTHRAQYGGTFAQARATLYPKGSTPKNTTKTYSEVLKTVPGSVNPTRKVLQTNRKQNTCKNQHSSLETEEDMESTSSTPISPSLHTPSPHTPSSSPPSQPSSSSSSPSSSSPSSFSSSPPSSSPTTSSPSSSSHKSPHPTPSLLQPPSHHPSSNKAPPPTPRTRSPSSTRIQDSGPPPPPHSPSKKAAVHRDRSKTKQRQRSPTTKKKCIEPVPSK
>I-4_AC_pol#LINE/I 2218-5889 [Aplysia californica]
MAVLQWNIRGLRANQAELSYLLTSHTPNVICLQETKLPTPTFTLKNYQTYNQIYTDNQIASGGNSILINNQTLHRQIQLNTTLQAVAVRVTLHRPITICSIYIPPNYPLSLRELINLRDQLPQPFIMLGDFNAHSPLWGNEPTDTKGKIIEDFLIKTSTSIFNDNSPTFQNSNNLNVSSIDLTLCDPDLIPDFQWSVLDDPHGSDHFPITLIPDIPHRTPIPDRFNLKRADWDGFHVECLEKLNPSQTQTQTFERFHETLLEIVQKHIPKLSTKPRRNKCWFTEDCQKAVAAKKSALRKFVNSKTNEDLINFKIARAQARRKIRTAKKTSFRNYVSKINNNTPMHKVWKMIKKLKGTKKDTIKHILKPNNSFVETEKTVADCIASTLSGNSSTHNYNPEFKKVKMSSEKTTVDFTSSNEEHYNCSFSLNELKCNIAELSNTAPGPDQIHNEIIKRLPDETLLLLLDIYNELWHSQQFPNSWRLATVIPIPKPGKDHSNPSNYRPIALTNCFCKLMEKLINKRLMWFLETSNSLSNFQCGFRKNRSTIDHLVRLETFIREAFIRKEHLVAIFFDLEKAFDTTWKHGILKDLHDLGLRGNLPEFIRNFLKDRSFQVKVGSTLSNLHTQEEGVPQGSILSPILFEIKINSITKTLQNNIDCSLYVDDFLICYKSKSKMDHIERQLQLQLHKLETWANGHGFKFSTVKTNCVHFCLSHKCVRQPDLYLFGEKIPVKKQARFLGVIFDNKLSFLPHLKDLKTRCQSALNALKVLSNPEWGGDTEILLQLYRSLVRSRLDYASPVYGSARKSYLKILDPVQNQGLRLALGAFRTSPVESLQAEAHEPSLELRRKKLSLQYALKLSSVPQNPAHKCVFGLPEDLKTLSSLGNKVSPFGIRIQNDLKDIDFSEDIIEPFAMSSIPPWHLTKPNIDTSLEKHNKKSTDKTTYLNSYKQLINRYPEAEKLFTDGSKNDSSVGAAALASPHSLSLRKLHPEASVYTAEATALEMALNIIDQSTKSTFLILSDSLSCLKSLERSDTSDNRILKLIIKLHFLHQSGKTITIAWLPSHVGIDGNEAVDQFAKESLKLPENKNSKIPFSDMKPKVKEHITSSWSQSWNQQIHNKLHYIQPKLTPRKPFSLPRREKVIFTRLKIGHTHVTHKHLLEGEEAPFCVACNTNFTVRHILMECVDFNYVRDKYFKCKDIKTLFNIIEPRRILSFIKEIGLFNKM
>I-4_CQ_gag#LINE/I 407-1672  [Culex quinquefasciatus]
MSGGEGGMESDGEDDEASNVRTKIYPNGSTGPFIVFFRPKLKPLNLISITRDLTRKFSGVSEIKRVHANKIRVVVNNISHANEIVTCELFTLEYRVYIPSRIVECDGVVTEEGLTLDELYECRGYFRNPAVNPVKIIEVKQLFSSSTQDGKTVYSPSNSFRVTFEGSALPKYIEIDKARLPVRLFVPKVMNCQKCKQLGHTTAYCCNKARCIKCGEEHDDSSCTQAATKCLYCDEDALHKLSDCPTYKQRQEKLKLSLKQRSNRTFAEMLKQATEPLNSGNIYNILPSDETVADSINAGASTSGTGNSRKRNNGSPSIRRKEIKLSPQQDRIPNFQPTPPGINPPGFPPLPRPPPLTPKPNPNKPKQGLIGFTVLINQILDALQISTGVRTVVITLIPFVRTFLIKLSEQWPLISTIISFDG
>I-4_CQ_pol#LINE/I 1668-5354  [Culex quinquefasciatus]
MDNSTSKMNEEISVLQWNCRSIVPKLDSLKILAHETKCEVFALCETWLPPNDDGLNFPNFNIITKNRDDSYGGVLLGIRHGLTFQRLNLPSQPGIEVVAIQVQIKNKCFSIASVYIPPKTSVNRQQLKNIVEMMPEPRLILGDFNSHGTGWGELYDDNRANLIYDLCDEFNLTIKNSGEITRIARPPARESRLDLSICSRTLSIDCTWNVIQDPHGSDHLPILISIATGNQPVEPVSYTYDLTKNIDWKRYALIITEAIESIDPLTPQEEYTFLANLIHSSAIQAQTKPIPSASSRMRPPSLWWDKECSEVYSEKSNSFKIYRRTGQIESYEQYLLLEIKFQNLVKCKKRNYWRTFVDGLSRETSMRTLWTTARRMRNRAPKNASEEYSDRWLHNFARKVCPDSTIPKQKRYSNDLVFPELSSAFSMIEFSVALLSCNNTASGMDGIKFNLLKNLPSVAKCRLLNLFNIFLEQNIVPEVWRQVRVIAIQKPGKPATDHHSYRPICMLSCVRKLLEKMILFRLDKWMESNGLLSDTQFGFRRGKGTQDCLALLSTEIQLAFAKKEQMASIFLDVKGAFDSVCIEVLADKLHKSGLPPLLNNFLYNLLSEKHMNFIHGNVTITRSSFMGLPQGSCLSPLLYNFYVNAIDSCLDNGCTIRQLADDCVVSVTGQSANHLSEPLQNTLNNLSRWAMELGIEFSTEKTEMVVFSRKHNPPSLKLYLLGKLIIQSLVFKYLGIWFDSKGTWACQIRYLKQKCQQRINFLRTITGTWWGAHPTDLIRLYQTTIRSVLEYGCFCFQSAAKIHMIKLERIQYRCLRIALGCMHSTHTLSLEVLAGVLPLKTRLYQLAHRTLIRCEIRNPLVIQNFDLLLDKNPQTRFMTIYHNHITKEISPSNFTPNRSTISSTHNPSVLFDLSMQQEIKMIPASQLSQLVPHIFLSKYNHIKAENMFYTDGSLIEGSTGFGVFNTKVSAFHKLQNPATVYVAEQAAIHYALGIINLQPQDHYYIFSDSLSTIEALRSLKSPNSSSFFFHKIKEIMSLLVEKKYKITLVWIPSHCSVLGNEKADSLAKQGALEGSTYDRIITYDEYFTIPRQESLVSWQTKWDKSEMGRWLYSIRPKVSTTSWFKHMNVERDFIRVISRLMSNHYLLNAHLYRINLKDDNLCGCGEGYHDIEHIVWNCPENLHARSQLLDSLRAQGRQSDFPVRDILASQDVPYLLCLYRFLKSIKVHL
>I-5_CQ_gag#LINE/I 112-1269  [Culex quinquefasciatus]
MTTTEATTRRVRQYPDEATGPFLVIAEATGEDNLRPTNLSKTIIGMYQQDYVRAVVLSRRRMKILMRTGQAANDLVATRTIKNVQFSIPQRLVEVLGVAHIELEVDEDDLANATTFDKGKMMQLHNPKIVETRRMRKRVDGVDKMLTTVVVTFEGQKLPTHLIINQVLYPVKEYVYHTRQCRKCWRMGHGEKNCRGKARCKKCAQEITTTIAEHACEVAVPVCINCKGNHEADDTKACPKAIKRKEDDQKRKEAHSQGKTDWFSTAGLAEETSGSQPVSTLTEETIPAPSTSGAQSKPAKRKCLDDNTDDSSEEEEIPRLTVHIEEGIRNAIQQAINSDEATLAISGVLGAPPSEIPDDRLEDALKARLFDILAQRTDDYIGTLRL
>I-5_CQ_pol#LINE/I 1276-4938  [Culex quinquefasciatus]
TTKGTPAQAFPLQFLQWNCRGALSKKASIINLINSTHSSILCICESHLDSAANFDIPGFHLFRKDHQSNSRGVLVAARTDLNPTSLDIPTPQEIDAVACQVRCRLGKLTIVSVYIHPNTVVSQNTFEDFFNSIPQPCILAGDWNAKNPAWGGDIQNQRGTNLLAALDVSRFVVLNDGSYTRFDANRLPSAIDLTIASADISLLFEWAPLDFPYGSDHLPITFGTTTEVVEEQQPGINYKRLDWEKFSTLLDERVKLLSPTASYEVFFETVWRSLTDATPTKSSTQVRKLPQPYWDTELQTALEDRRDKFRAWRRKLDYESYCIYTDAEQHFKVLVNRKQRESWRSLCDSFDSQTSVQKLWRLGRRYKNRVTGANHRLRDEVQLNKLLDKLAPPSTSREPLEFNQCNCSCTTAGAYFTTNDLDSAIKPGQDTAPGVDGICYSVMRNLPFTAKMKLLRIYNDIFDTGRIPEAWKVFKVIPILKPGKPPSDASSFRPIALASCFRKCYENMIKEKIEWYIESNKLFPHEICGFRKGKGTLDALHILVDQVQLALNNNQHVIACSVDVEGAYDNVQIEVLVAQMRRLGISECLVKAVYSLFKERLLHAVLDGNPIQRVTWVGLPQGSPLSPLCFNIVIFSLFGFRIAGVFYLDFADDITVACRGANLDESIRNIQTAIDEVVGRINALALRVAPSKCSSIIFSRRAVDDDRTPVLTVDGSPVPYLRSIKLLGLHLTPTLSWRKHFLYVKHRAATYTNFMRSVAGQSWGADPAALLTIFKSCIRPILEYASIFFTGAPQADTIILDRIQWSCIRIALGSTKTTHTGSLEVLSGLMPLKHRREMATMKFVERRFSLLPWHERFVNTTLEGQSSTWIRRNILQYRAFSGWLSTRDTLPCFQFDLDTRRVAVKVDLSVHRAMQEGLHQPASDRVEAEIQRNYSNATLLATDGSKDGNGVGYAVVDSRMRTVHSTKTHKLLSIFHAELLALRQAVEIIAGSGAGEYVVLTDSLSSLMSLSNSRVSSHQPSVWFEIKRFISQISERGANVTFMWVPAHRGVPLNEAADRAANQARITGGSENYNLTSLDISFPARKRAMEHWQLDWDNGTKGRFCNKIVPTVDTSPWFADRDXNRREIVVLSKLISNHSRLPAHLWRNNIVEDATCQCGESSATPDHLLFTCDLYDDDRRALWRAIVSQKEIPDLELVLKSQNDVVLRAIVKFFDDAAIDL
>I-5_DR_gag#LINE/I 2-843 via tfasty with Nimb-3_DR_gag, 1 frameshift. [Danio rerio]
IKLTTILKNQVGEIIMAKVLRDGNLLIVCKSEEQRERAMKIKEIGKYKVSNMSKIGVGNKLSKGVIWGVPVGVNIEDLKSNLRGGKITVRDGTRSDSEGILIFFDDEVLPSKVTLGYLSYRVREYIPRPVRCYNCQRFGHVAKICKGKKRCARCGGNHGYHNGCVVMKKEREIQQIKTQNKITYAEAVRRIKQRERTEENPVLVRQNVEMQEEVGDEKILIEVKKLVTFIAGVINATMEIKSKTERIQVIVKAAVHHLGVSGITWEEVRNDLNAKTSQDIT
>I-5_DR_pol#LINE/I 864-4604 [Danio rerio]
MPTILQWNARSLLANGQEFKKFIEDLSNKPEIICIQETWLKIHLDFRITGYIDVRHDRKEEIGGGCVTFIKENLSFREVEKGKDQEYIVIAVWIKGVELIVINYYNPCKKMDISKLRQIKEINNRNVIICGDFNAHSTLWGGEKLDENGEILEELLEEMNLVCINDGSGTRLDLYRGKLSALDLTIVSKNLGDICNWEVWEESTLGSDHFPVISKLAWKGEEEQRGRIEKWIFSKAQWDKFMYLCSVRSEEIDLNDEIEEIDRKIREVITTVAEQTIPKNKSKMKKRAVPWWTDGCNKAVRERNKMFKILRKTHNIQNLIKYKKAQALVKKTIKEAKKQSWRDYCSKIGRTVPIGEVWGMIKSMRGIKKQWQYPVLKAGEELASTEEGKAEMIAREIVKVYSSNNLTEKGLRSRERTKAKYPGISDKKEKTDSSMDAPFTLGELKRALETFQATAPGKDNICYEMVKHLDVLAMGKLLGLYNKVWEEGKIPMSWKEAIIIPIRKPGKDATNPSNYRPIALTSHIGKIMERMITERLNHYVEGRGFISMYQSGFRRGRSTMDPIVYLETEIRKAQVNKEVVLAVFIDIEKAYDMVWKEGVLIKLNKLGITGRIFNWIKDFLFGRIIQVRIGKVLSKRYVVENGTPQGSVISPILFTIMINDIFSNIQSDIGRSLFADDGALWKRGRNVKHVKQKIQEAVKLVEEWSYSWGFKLSVEKTKTVLFTRKKICDIEINMYGQKLEQVKSFKFLGMWLDTKLTWNEHINQLVNKCKKVLNIMRCLSGTEWGASRNALRNIYVALVRSVLDYGCFIYGRASKSNLQKIEVIQAQALRICCGAYKTTPISALHVEMGEIPLELRRKQIMMNYWINLQGQEINSNPAKRVLIPRWEYEKNKTLFFGRDSMEVAKEMELIDKGFNKTVPIATTPPWLYPLGLVDLELLSNSQDYRNIANMSGIIEDKIMTKYKEYTEVYTDGSVNLDLGRTGFGVFVPKLDISIKKRTTNYLTIYTVELMAIIAALYWIEESGLKKVVICSDSYSALSSIKSMTSKNRQDCIYEIYEILFRLQRANIRIVFMWIPAHIGIKGNETADFLAKEACKLDEIMNILLSKTEAKVIVKKDILKQWQYNWDRDITGRHYYRLQEKVGNWRKGKGNNKIEGIITRLKMGHTGLNKTLHLIGKHPTGLCDNCQEEESVEHVLCYCKKFIIEREILKKEIIKQNFSEISVKIILGNDNNESLVKYLRKTGLINRI
>I-N1_CQ_gag#LINE/I 89-1471  [Culex quinquefasciatus]
MAAAAKADSDWTVHKTKDGKPFYWNKVTQESVWKKPDGFQEEKQPLTDKEVEKPDPPTPRVRKYQDAPGERWQVFFRPKHKPLQTMRISEELWKHYPGVTDVTKLHQNKLRATVNNPKEANAIVCDPRFCIEYRVWIPARSVEIDGVVSENGLTVQQVLTAVGHFKRRNLPTIPVIEARQMGTAEGEGASKRFVPSSSYRVTFAGTALPDYLVVDNMLRLPVRMYRPRVMSCSNCKKLGHTKAFCSNKTVCGKCGEKHPDEQCQKEVEKCLLCGGQPHEVRSCPKYKTREDKLKRELERRSKRSFADMLKTVTTSAGSENPFSVLSEEEDDSSEDGTEDELIINAKGGTSKRKRKTKKKSNSDKSRSSTLPQPGSEKFNKAFPGVSSTKTSPKDPTNPAAVVPQKDHGKDNRIPFSLLLEAVLSAVSGSTRTLLEPLIPFFKELGKILSENSALNAIISFD
>INGI_pol#LINE/I  gi|18413532|emb|CAD21860.1| H25N7.03 Nesr-identical to 9-4982 of the INGI consensus in RepBase [Trypanosoma brucei]
MPATSTWCQGPVPRIIGGSQEPAAFLSWGTLLCSGYGIIQHRDQQRLAGTPSFICRSLGTCQRAISSIIRTKMLLSGDVEENPGPSLRGMQWNCAGLSQGKRLALHKTLVDERIAFCLLSETRMTPGEAACFSVAGYQHHGIARNCKGGGVSILVREDLPVETGMAVIGRIEQVHATIHLARGTALTVTSAYIPPKHTFTATDLDTLLTTDGAQLIGADANAHALAWDRASPPNTKGETLTQWCIDNQFLVCNTGECTRYARHHGESTPDVTLSRNCTVYTWTSLYSPDSDHHHIFFDVIVGDDTDALSCPRLRKPMYAWLKANWRNFRLKVDELCRKIGREKNVNTLEQKLSSAIRIATKVSVPRGCRATPPHWTPELAKLDEEIAGCGPSHRREKLVATRKQILDRTTKKRWSTLCSRLAVSDRCSWHIVKKVYAPRPLTTPAVLVDNAAITDYRQAERFSKLYSSRARRHPDSHPPAPIKTIASEFSPITMAELRRSIKLLPSGSAAGPDCLYNEALQHLGRTALNVVLRLFNESLRTGVVPPAWKTGVIIPILKAGKKAEDLDSYRPVTLTSCLCKVMERIIAARLRDTVESQLTPQQSGFRPGCSTLEQLLHVRAALCRPTHQYRTGAVFVDYEKAFDTVDHDKIAREMHRMKVSPHIVKWCVSFLSNRTGRVRFKEKLSRSRTFERGVPQGTVLGPIMFIIVMNSLSQRLAEVPLLQHGFFADDLTLLARHTERDVINHTLQCGLNVVLQWSKEYFMSVNVAKTKCTLFGCIERHPFTLQLDGERIGADRTPKLLGVTFQCLQGMATHAAETRRKMDFRLLQIAAISASTWGPRRQVLRAFYLALVQAHTMYGIEVWYWDASERSRDLLASAQHKASRIIAGIPHGTRKEDSLLEANLLPLKTTTLVRSMKFMLMCESRGGCLRRSAEEVYHSKHPVRALHSRIMRSYPHLRIEPREHPLETSTLRHSCRPIFHTQIKPVCAGDPDDVKREASEKWIERHFARRGKEPPRREHYELWTDGSVSLGEKSGAAALLYRNNTLICAPKTGAGELSCSYRAECVALEIGLQRLLKWLPAYRTTPRRLSIFSDSLSMLTALQTGPLAVTDPILRRLWRLLLQVQRRKIRIRLQFVFGHCGVKRNEVCDEMAKKAADLPQLRDTWIPDIIAYAKRVLRSEEVHENTHRFGITGNHFPTKHKEELTREEETALARFRVGSSRHYGWMLRKINPSVPPQCRWCNPQHAEIGPTIQTAPTVATRTLQRTSEPTKCTECDATYQCRSSAVTHMVNKHGFVRADALRRIKYGDATPAVDIPPEPPPVVAIVPLPSSTRVPMRPQVLHCTICASKFAVPGRLLHHLRTIHGIGSGSCRVKRGRENEDSVQGDGSVPAAPAPQDARKLPFQCDLCEASFGTRSSLSLHKKFKHKSIVTEDGTVVLVQFPRKRAREGNVDVPGKGEVQCGVCQKVLSCRDSLIRHCKAFHKGEGVELKCSKSTKLCATDSPHTNTSMLVCPTCGRQCASKTGLTLHQKKMHGMKVERAVTSQRGDCEETSLHLMSCPGLKELRVRFAVEGECVQDVCFSKRLAQFLIAVERSRPQVKSSPKVTVIQPTLPSATSPLIAECGASRKSTGRRNSPDTLRDRGGMQSTSNRNRKRGRE
>IVK_DM_gag#LINE/I 108-1511 [Drosophila fruit fly genus]
SLSSYLLDLLINAYVQIQKHSISINLLTMAPGPLNLGDNRFASLSVSPKAKKKRPFQKLQVDFPDLPETQCKNPRYLVVSSKNSPKTISDYNCFAVHRALKYISKDITSISNLRDGNLLLLVNSREVSDKFIKVTSLPGLCDIECKLHNTLNFVKGTIYAPCLINIPENEIVEELKSQNVHSVFKFTKMIDGTPKPFGKILVTFDRFTLPSKLTVSWHTVKVSEYIPNPMRCKSCQLLGHTSKHCKNPPACVSCNLAPHLPVPCTRIFCANCTGEHPASSPECPQYQTQKQLLHIKTSKKCSFHEARTILKQQQNTTNNPTLTYSTVANQSTASVMLVKKSRNPNTITNTDLPTSSTKVPAPLSPTYPTSRTNSLNLEENLTSSPSTSAKTDFSYLSPTSKLKTCMERSRSLRAEANALLGQTYNDDNNTLMTSRSNSNESIASQTSNLQTKINTTDSDDTMDDPDS
>IVK_DM_pol#LINE/I 1583-5290 [Drosophila fruit fly genus]
IKKKKFLIMTITILQWNIHGIFNNYNELTLLIKDHAPDIVFLQETNLPCNSTNFICPKEYSGYFHNFSYNTSAKQGIGVLIKRNVPHTYRNINSSILCSALQLKFEQVINIVNAYIPPSQIFSSSDISEILQNLNGSTILLGDLNSWSPLWGSPRTNTRGKKIESVILENSLIVLNDGSPTHLSTHNTFTHIDISLISPQIAHMCSWSISDNLHGSDHFPITIHINTPTRPDNTLPLPKYKTDQANWKRFNESCEKSAAYWTVGCLNQQVAQMTKVIRAAANCSIPQTKRVIHKAKVPWWNANLQQLRDQKQRLFSSYKANTNDTNLIRYKKANALFKKAVLSAKRNSLEKFTSKISPVSSTKKVWSDIKRLAGIPPTPFKYIKSNSGTLTGSFDIAEEFALSWSKYSSDQNFSAEYIRVKNRYLLEPYAIDSLSPSATSLDSNFTLLEIENSVAKAKGKSPGADRVSYPMLKNLSPHLKTKLLDIFNQILTTGKYPHTWRSAIIIPISKPNKPPSDINSYRPISLLSCLGKTLEKIIAQRLTWFIKRHNLISHNQVAFKRNHSTMDALLRIQHFASNALSTKNHVSILATDFERAFDRVGIHAVLCRLERWGIGPRLYNLIKAFMTNRSFRVRINNVTSNSHILHNGIPQGSPLSVVLFMIAIEDINDIVTRHKDIYISLYADDAIIFTKIKNINTVREKFLEILQEINSWGATSGASLAIEKCQTLHICRKQRCNLSDIVFNSRTIKDVNFLKILGITFDSKLLFKQHCQTLRKQLETRFNIIKFLSSKYSYIHIKTLIDITRALMLSKIDYGLPIFGWCAKSHLKKLQAPYHGAVRRAIHAFPTSPVACTLAESGLPSIQSRVEETTLMLIPKLYTTSNCLLTKDFGAIFKQKRKFKCISTLRRCANYIKLLDLPLPKPRRPFKSPALWGSKQPNINLQIYNAAKKDTGRLEYQKRFMSAQEDLGVKNWIYTDGSKVTGATTFAVVDSNRKIIAGGRLPSYNSIFTAEAFAILKACQFASKNAGKSVICTDSLSSLSAIRNWNHNDPTTQEVRHILSSHPKKITLLWVPSHQGIHGNELADKAAQEMRLTPSILFTPFNSKDLKSRIKLYLKEKKLSEWALFMHRYQSINPNCIMFKPPTNVHKRECATFIRLRIGHTQSTHQHLLMRSARPTCQLCGDELTVDHILNACSQLHSIRSHLFGTHSLSNCLSIPSCENISKIYKFVQKAKFII
>I_DM_gag#LINE/I 286-1566  gi|903725|gb|AAA70221.1| putative ORF1 [Drosophila fruit fly genus]
MTDPPNIYKITSKTYQSQLGEPKFIIIKRNDNNSFERTSPFIIKKSVDFACGGEVEGCKRTRDGNLLIKTKNELQARKLLKLTKIADEDVTASEHKTLNFSKGVIYCNDLRHIDEDTILQELKPQKVSEVKKIMKRQNPNSNSDTNNITLVETGLIIITFESHKLPEIVRIGYETVRVRDYIPLPLRCKKCLRFGHPTPICKSVETCINCSETKHTNDGEKCTNEKNCLNCRNNPELDHQHSPIDRKCPTFIKNQELTAIKTTQKVDHKTAQHIYFERHGFQTKNTYAKTLTNGTTQRTTNTPSPNIHTNTTQSQQQNPHHTPKSAAQNTSAKTPTTEPAKTTLLSNQPHQHHHHHSYDKLEDMDTDYTPTRKPSTTYSSQLTEDLKIKIFPKDKSNNLSINLKASKLKAKAHKNKHTNNSDSESI
>I_DM_pol#LINE/I 1635-5294 gi|51950578|gb|AAA70222.2| putative ORF2 [Drosophila fruit fly genus]
MSLTIIQWNLKGYLNNYSHLLILIKKYSPHIISLQETHIQYTNNIPTPINYKLLTNIATNRFGGVRLLVHKSIQHTVLNITIDIEAIAINIESKLKLNIFSTYISPTKNITNQTLHNTFNIQQTPSLITGDFNGWHHPWGSPTTNKRGKITHRFIDNMHLILLNDKSPTHFSTHNTYTHIDLTLCSPILAPHAKWKILNDLHGSDHFPIITTLFPTTNPQKFYRPFFKLKEANWEQFNALTHQTNKKYPTSHNVNKEAALINRIILYSANLSIPQTSPNTHPYRVPWWNKHLDQLRKEKQLAWKKLNRTITVDNILDYRRKNAIFRYELKKRKKEASSSFTSTIHPTTPSSKIWANIRRFCGLNPAKQIHAITNPVNNETTLASNEIANIFAQHFSDLSGDWNFSEEFRNNKYRNNIHLYTPSPIAQTIEENITYLELSSALQTLKGCAPGLNRISYQMIKNSSHTTKNRITKLFNEIFNSHIPQAYKTSLIIPILKPNTDKTKTSSYRPISLNCCIAKILDKIIAKRLWWLVTYNNLINDKQFGFKKGKSTSDCLLYVDYLITKSKMHTSLVTLDFSRAFDRVGVHSIIQQLQEWKTGPKIIKYIKNFMSNRKITVRVGPHTSSPLPLFNGIPQGSPISVILFLIAFNKLSNIISLHKEIKFNAYADDFFLIINFNKNTNTNFNLDNLFDDIENWCSYSGASLSLSKCQHLHICRKRHCTCKISCNNFQIPSVTSLKILGITLNNKYKWNTHINLLLPKLHNKLNIIKCLSSLKFNCNTHTLLNVAKATIIAKLEYGLFLYGHAPKSILNKIKTPFNSAIRLALGAYRSTPINNLLYESNTPPLEMKRDLQIAKLSQNLILSKNTPIHKFLKPKKANKKKTSTIDRTIKLSLELNLPYKPIKLHKNKPPWTLPNLIDTSLRIHKKEQTSPDQYRKLYEHTKNNLKTHNFIFTDGSKINYTISFAITTETDVLKYGILPPYSSVLTSETIAILEAIELTKNRRGKFIICSDSLSAVDSIQNTNNNSFYPSRIRSLITQHAPKIKIMWIPGHSGIKGNELADQAAKSASSMPLILTPNINTTDIKKHLKADLATKQKEHIINCSPWYQSINTNTSHPCDYLKQSHPNWTRLDQIKIIRLRLGHTNITHQHYLNPNSIPTCPFCQGDISLNHIFNSCPSLLQTKQDIFNNTNPLDLLSKPNPDNIQKLILFLKKTKLYHKI
>I_Ele2_gag#LINE/I 140-1429  [Aedes aegypti]
MTGKPPALMAGVPDDPIGSQRCGRTPGWMQSKDEMGQTMVLVLRCKVPENVTADPRLPEPFTIGTSVELAIGAKEARSVKTTREGRGSRYLLRTNSKTIINKLQKLTELIDGTPIEIVPHPTLNTVQGIVYEPDSINTDEKMIEKHLIPQEVHTVRRIKKRVNGKLQNTPLLILSFHGTELPEYVYFGLLRIPVRTYYPSPLLCFNCGSYGHARKSCQQPGICLRCSQPLHVTEGEQCANTPNCFHCNEEHPIMSRECSKYKEEDKIIHLKIDRGISFGEARRLYSEENRRETIARMIQNQLKQEVAKKDQLIATLQKQVADLAKEXAILKSAPQEPQPTFTKPSSLPPNSSVAPTRVSGTSRKTEHQSRRDKPFVSPSAEDNGTDDGIRTRSRSGKRVFEISPTDSRGNRGKRVSNHPCTSNNTTNTET
>I_Ele2_pol#LINE/I 1396-6006  [Aedes aegypti]
MYKQQHHQHGNVMTGETYKTISPNSDPDLATKTDTNTEERNLYQDARMDPSYKPTEHDSGHRSKNTLDYNNQHCERFEGGECVVPPSLPEEEASLAREAIRDVYLQPVDRQTSSSAAIKRKSSALPYNIVSNSAAYDQYNNLNCKPSSSSTSFDSPCARLTTSTLTRDVPDFSDEPLAAVDVXKPTVSASIFTSRYLPVNHSILPNSPTNLGTNTATTQRRSNTTENKNNESFLRSHLHEEPRRAKGKREVTYPLPVLEVDARGGRNDAYHERLAFLSPSQNPVEPNYTHTFTTDAAPNILHRHPRSPRSNSKSSDATISSNSXEQAVSPSFAMQWNICGLRSHYSELQMLIAKHQPVVVSLQETNIDHQRAPAKLLGDKYEFLFSSCSTHGRQGAGVAVRRGSPFQRIQIQTRIQAVAVQLFAPTEITVVSVYLPPKDKNAINLLEDLLEELPKPVMLLGDLNAHHVAWGSTTSTAITEAKRRGEAILELVVQNDMVVLNDGSHTRIDPVTGNSQALDISICSTSVAAKFAWKIQTDTSDSDHLPILIDLLSASSELHCRSKWIYGKANWELFQEITSETLRPGNFLTVEEFTNRIISAAEASIPKSSTKRGTKSVAWWSEDVKIAVKQRRKRLRALRRLGPEDPKRQEALKQFHDARASSRKIVKEAKQKCWEDFVESINPTSSASEVWNKLNRLQGKRTSNTLALNLPKGFTNNGRDVAEALADEYETKSANSSYPEKFRRKHASNSNLYNKSQRPHLYKRYNTDLTIEELVWALDRKGGSSTGADNIGYPMLQRLPISSKTAMLELFNRIWNSGTFPERWKLATVVPIPKPDADRSRADGYRPIALLSCLGKVFERMINRRLTTELETNKKLDPRQHAFRPGKGVESHLAHLESLLSFENDEHVEIVALDISKAYDTTWKPGILRTLKEWKISGRMLNMLCSFLVDRSFQVSANGHISSSRIAENGVPQGSILSVTLFLIAMQPIFTKIPPNAEILLYADDVILVVKGSNRQLLRQIMNKTVRSVTEWANSVGFSIAPTKSKLLHCCRLRHRKRGRAIKINGASIAHVRKMRILGIMLDSNLNFKQHLASVKSSCSKRINILRILGCRLKRSSRFTLLKAGAALITSKLFFGLGLTSRNIDDMERILGPTYNEVVRQSSGAFVSSPINSVMAEAGCLPFRLALIQRLAQLAVRLLEKNPSAVNYPVVLRAKDFLRQTTGYSMPNVCSTLRNYDREWYAHSPYTENHVRNKIKAGTNSNIVIPTFQELISNQYQYHKKTFTDGSKDADFTGVGVVMEDKEESYALPEACSVFSAEAHALMTAATIASEHHNTIIFTDSASCLDALQSGHSKHPWIQSIERVSRSRSITFCWIPGHCGIAGNERADSLAKQARSKQKLDIALPAQDLIKNIRRKIWSVWELEWRQSVSQLRQVKCSPIKYPDRKCASEQRTLTRLRIGHTRLTHSYLFNKSSPPMCNSCGTRTTVQHILTDCRLYAHQRSNCGITGSLCEILSYNPQRETAILQFLKDSNIYNEI
>I_Ele4_gag#LINE/I 1010-2698  [Aedes aegypti]
MAASSAGPPTNSWWDGPANDNFGDRVDGSFPGPTLPPFMDPEGLHGELHLLRISGVNGPLPNKPFHIRRSVERFVGGKIDGAFPEANKSSYALKVRSQRQFNKLLDMNQLLDGTPVLVAEHPTLNSTRFVVSCRDVVDMSEQELLEELKEQGVKEVRRITKRKGQARENTPALVLTCRGTIRPETINFGYIRCRTRPYYPSPMQCFNCWLFGHTKLRCQAKVATCGTCSGDHPIAENRDCDIGDFCKTCNSNEHRISSRSCPRWQYENTIQKVKVDQGISYPAARRXVEQNRGSXTFATMASYATKXPXQPRERNEELSAVLAAKDAEIAELRAALATRXAPSXTVSSEIETLKXIVXDQARQIQLLTEQVSVFLKAVMPAASXTSPTNXAPTTKALTXSSATXXEETGXSEPSATTNXASXTTLNNSPTTSKNGVHEPIVDPEAXKDTISAPLSXSVTXNEQHXDKXLDXDPSDSDTASSDRSANIEFFSPHQSKNTLSPXTPKPPRTRALLPRGSGSNVDPTKTPGKRPISSISRTETLFQQQKKSKIKSAEGHAAVSNKR
>I_Ele4_pol#LINE/I 2818-7797 [Aedes aegypti]
LATDRRSAGELEATSEPESPIRLRHHAQNNSPAVSLDSRGANVPDVLPLPESLGRLRRLEDDMDEELPLHLLRCPAKTPGSQSPVGAVVSHSGTDGQPLALGEDLEEGNQVAKPTSLDDVGSQVFQVIGTRRALPATPKDNVGSQVFFHQANTVAYTSNPTIYDAVSSTSVSVDSFVKNPGHPGHSNPGGKSHPVMSTIHSERPFPDPTVDQLPPLEPPGPSFSDVRSQSSYASSGHLGNSNPSGSSTKLLKNSNPDVIETIAQHTIPSAPTTWPPRSLLMDDQPRSFSAMYSENLNPGAIAVAPPPPVLLPPSSGTPGPFSLDNRPLFSEQINSDGTTAALTLAVRPISPLLGDHHRCLDTSGARRLGSKDYSGFPSYSFDEVPLANANPPASSRSPEYPSGGDSLNRSAAITPPNFPRHHSENSKDTSSSSTHSKNSPSENCDFRSRFPTPTLPDPTKFCLQWNINGFYHNLSNLELLTHVSSPWVIALQEVNRTSTTAMNRSLSGKYRWTMKKSRNVRHTVALGVLLSVPFEIIEIDSDLPIVAVRLVGSFRLTIINCYLPCGSLSGIKEKILNIIRTTPEPRLLLGDFNAHHQIWGGDRTDPRGTAILNALEDSDMVSLNDGSPTFYNGRVASSIDLSMASRSIAYKFLWQACADLHGSDHYPIQISAAVTSPPITRRPRWCYDRADWQIYQSNINHLLELEEPASLTSFSNVITKAAASAIPKSSSRPGRKALRWWSDDTRSIVKARRKALRALKRLPNDHPEKEDKLRIYRAVNIKCRSTIRTAKRLSWEEFLDSMNPSQTSADLWGKINALSGKRKITPISLDIQGSTITEPSAVAEALGNYFGSLVSIDAYDPVFRQRIANNQSSLSNFVIPEDHGTSQLNCSFSMRELNFALGSSTGKSAGPDGIGYPLIKNLPLGGKAKLLELINSMWHQRSFPDEWRESLVIPIPKTNVASRDTSKYRPISLTCCLSKVVERTVNRRLKEQLEADGRLGHRQHAFRPGYGTDSYFASLGDLLHDARTKGQHADLVSLDISKAFNRTWTPLVLKQLTEWGFSGNLIGFLKNFLLHRSFRVAVGNHSSSAFAEETGVPQGSVIAVTLFLVAMNGVFENLPPDIYIFVYADDILLVAIGHTPRRTRVKAQAAVTAVHKWASSVGFSLSAAKSVRGHVCNSRHKLVSPGIKIDGQPIPNRKTVRTLGILIDRNLLFKEHFNAVKTNCRSRLNIIKTISKPHRSNNRSTRFRVAQAIVDSRLLYGLEITCLSQQNLLEILSPIFNGYVRTISGLLPSTPADAACAEAGILPFRHRVHAAICRKAATYASKTAGNDRVALFDQADRILREVANSSLPPVARVHWHGASSWQLPPPIVDEQIKKTFRSGDDSTVLRASVLELLRTKYPEHIHRYTDGSLSQRGVGIGISGADLTLCQSLPTECSVFSAEAAAIFYAAISPASAPILIITDSASVLSALQSERPSHPWIQGIRAHTPETVTFTWVPGHCGIQGNVAADLLAGTGHQMSRFTLSVPPPDVKRWIAKSIRDYWAHEWHQNTSAQLRKVKGDTSSWEELSSLRDQKIISRLRTGHTRFAYNFDGRSFRQECEQCGVHNSAEHVICHCPLYGHHRSTNNIPGSIRDALANDPASLSALICFLKETRLYYRT
>I_Ele7_gag#LINE/I 230-1594  [Aedes aegypti]
MAASSGWDPGLPPTAVDGRPTVPEWMGGVGIGQLQILSLFAADGETKLCPFIVGKSMHDLAGDIESTTTEASGMKYVLRVRDAGQARKLLNMKALFDGTAVKVEPHPILNKRRCVISCREIMNKTEEELQNWMAKDGVIGVKRITRMENGKPVNTPTIILTINGTAVPDYIKVGPLRIKTRLYVPDPMICYRCFEYGHTKTRCKNAAKCRNCSQAHNMEEECKEAPFCFHCQGNHGPSNRSCPVYATEKEIVRLRFTKGISQQEAIKQVKAGGGSYASVSQVQNRLTIAQGKSESELLKTKDATIKQLTETIATLTKRIEELERRSKSKKEKKRSKRIQLTKDDESCSEMETDSSAKQTTTEQPKGGTSTQVSAAFIKPSVQKHKRHPTTEIYAPITKKPLADQIQLPNTQSNTNLNKSPANPPGILDLQNLMDSTRLDSPRSRPNNGQHNKPSK
>I_Ele7_pol#LINE/I 1569-5249  [Aedes aegypti]
MANTTNRVNSQFSPKPQSQTCLALQWNLRGIKFRIPELQLLISKFDPICLSLQETMMPESKTPPNFIKGYTLYIRENPDNPSKTGTAIAIKSDIPHRKIDVSSSVLAIGIEIDYPCKVTLLSLYIPGHLSNQTIKTDISKLLNQFSSPVLLMGDFNGHSTLWGCSNNNSRGVMLGQLFDEFGLTLLNDGTHTRICPSTGNSSALDLSLCSHSLGSQLSWMVHDDCCCSDHLPIVISLNRAPPVSTCRPRWKYEQADWVNYQNEVFHAFTVDPPNSADDFVKQLFQIASNHIPRSSGAPGRKSVPWWNSDVHSAVKLRRKKLRALQRLPKEDRKNSEIFAEFKAARNAARATVKSAKQDSWDQFISSINPESSSKELWDKIHRLSGKKARQSIKLRINNQITEDPSTITNHLADHFAQSSSSSNYSDRFISRKSSIESAPLNLESDDSQEYNRNFSFDELQWALHKVHGSSAGPDDVGYPLIKNLPLIGKTILLTIFNNIWNQGEIPDSWKEGLVVPIPKPGKDKNSADSFRPITLLNCIGKILEKMVNRRLITLLESQGLIDDRQFAFRPDKSTDDYLTELEDIIDSHLERGMHGDIVSLDLSKAYDRAWRFPILKSLEEWNIKGRMGRYVQNFLKDRRFRVILGNNRSELRCQENGIPQGSVIAPTLFLISIQSLFKTIPPNVFILVYADDITIITFHSMKSLARKRIQSAVNTIAKWADENGFTVSPEKSQLLHISQNRKKMSKLPDITLNNSIIKSQISLKILGIHLDRSLSFIHHLNSVRKQICNRTNLIKVLGSRIPCAHRKTINQIINSWLLPKMFYGVGLFSRGGDLVNKRLSPLYNKAFRYASGAFCTSPTSAIMAETGQLPFEYHLTTCLVAKATRWLSLGGRYNVPLVKRTTEKFQSLTNQVFPTIATLPRSKNRPWNQPLLKIDLSLLSQVKAGDPSSIIQPHFHKLIADKYSTFQHLYTDGSVSNGKVGYGITGSPNVSNISSALPSIYSIFSAEAYALMKAVHLISPQNLQSTVIFSDSASCLQEMNSYSLKHPWLQEAQGLALTNGATFCWVPGHSGIHGNEEADRLAGEGRGVNPEDVSVPSIDVLRWTKERILESWNTKWHHSRDISLRIIKPSIFPWPDNSNPKHRKIFTRLRIGHTRLTHEYRLDKVDPPICTSCNSPLTVRHILIDCLTYNNERLAYNLGGTLDEVLSTTKETDLLGFLTATGLLDQL
>I_Ele8_gag#LINE/I 504-1835  [Aedes aegypti]
MASTSGGGPIGPLNRNFPGLTETFGAVTTLLLMGKNGSALPEDPFIVGESVEEWAGPVERSNIEGYGTKYVMRTRNQAQVEKLLQLNTLKDGTEVSVILHPKFNTSRCVISTYSLISMEEKEILNKLASQGVTDVRRIMKAKKEKTPAIILTFSRAEYPQSVKVGLLQVPTRPYYPNPLLCFKCYSYGHSRNNCPNPQRCFNCSSQHEEMDTCDQPAFCINCEKNHRPFNRQCEVYRKEVDIIRTKIDFNLSYPDARKRVEAGNGSYAKVTAQPRLDKTRFDAMAEQIKKQQDMIEKLEQQLQNQRSLEEKVTEMLERSKAKETKIEELLKYVQQRDEKIRKLEAQNNNLKRLLDGMQAKQRSESLTSEPSLEMESIKRKSKRHTQPTDQQQVSKGSAGMSPPPKRTSSRTRSPIMTRQTSNQEDTAKSNYIAESSFKSTPPNK
>I_Ele8_pol#LINE/I 1838-6130  [Aedes aegypti]
MAQNQNQLVTQSTNSIHPKINNHRFEACERVVPPSLRKEAQGEEETVRDVTPQPVDGKSSSAAGWHAPHSQHQSQTDQQNTNHPSTCSLHTKNVLSHNSLNPTSEVSMSALSRAMHVSTSEKSNMPKEAPSDGTLNCLPRAALTDAYQYDLFYNHMQRPGSSETPTITRCRTFPPTNAYNPSAEEQQKSGSENLIINDREYGESYSNRRRSPTISTNDTFSGSATTRLALQWNINGLFNNLGDLQLLIHDNAPQAIALQEIHCRNARNLDRLLEGKYRWYVKTGSTLFQNVALAIHQSVAHTFVPLNTALIAVAAKVHLPFRHTIVSIYLQNSGISNLEEQLASLFDQLEKPLLVLGDFNGHHYAWGSPKTDGRGVAILNTAEQHDLIVMNDGSPTFLRTNCRSCIDVSLASSNILASLNWYIHSDPMGSDHFPIEIQHNAPPPETTRRPKWKLNEANWEGYEQTITSLIDPNREYQLEELSNIIIDAATKQIPKTSSRPGRKASHWWCDEVKTAVKARRKALRAVKRIPRDHPNNDAIHAEYRRLRNECRKTIREAKQRSWEKFLDGFDCEQSTSEMWRRVNALSGRRKLRGIAICQDDIISRDPTFVANNIGKYFAKISSLAEYDDSFLKFQEDKNCTLSKIIVPNDEENNDFNQPFTLEELLFSLDASNGKSAGPDGISYPLLKRLPLRGKIALLEMFNAIWKAGSFPPDWRHSLVVPIPKKQATSTNPQDFRPIALTSCISKVLERMVNRRLTTVLQEKQLLDFRQHGFLKGRGTGSYLASFGQVLHDALSNGLHVDIAALDLSKAYNRVWRPSVLRQLINWGIVGNMGKFIKGFLDRRTFQVIIGNTLSEEFIEESGVPQGSVLAVSLFLVAMNSVFNDLPDGIFIFVYADDIILVVVGRSPKLIRRKLQSAVRKVSKWAISCGFKMAAEKCVISHVCNFKHHPWTNPVIVDGCEVAFKKEAKILGVVVDRKCNFASHFSFVKKDSESRIRLIKAISGRHSTNNRRSLMNIGRSIIISKLLYGLEITIRSATLMIQMFSPTYNKMIRLTSGLLPSSPTLSTMVEAGILPFEYTLTAAASNRAISFIEKTYGAQRDIFILDETRKLLQQYTNIDFPEIATLHRVGNRRWDRPNPKVDWSIKREIRAGESPEKIQAIFNELIENKYATHCKIYTDGSRSNGKVGIGISSPIGNFARRLPDQFTVFSAEAAAVYFAIKKCTSIPNASIIFSDSASTLAALENPQQKHPLIQAIENSILPNTTLCWVPGHSGVRGNEEADKLASIGRTSTKWNLGIPRADMKLVIQNALQDAWYRRWESNNGEFLRKIKNTVSEWSDRKNRKEQKILSRLRIGHTRVTHAHYISNSTKTTCETCSVPLTVEHILLNCQKYADIRNNLNLQDSIRTVLSNDVNEEEKLLKFLKETKLXNEI
>I_Ele9_gag#LINE/I 73-1413  [Aedes aegypti]
MTAASSGDPGGSKESWPCIGNPSNVEFGSLTYLLLRSKDDKVPLTSNPFIVGQSVELAAGGPIEGASTEAQCTRYTLKVRNQTQVKKLLRMSTLLDGVEVIIEPHPILNVSRCVISCFETVHMTEDAMLDGLNSQGVIRVQRITRKEHGKPVNTSALILTFGRCDYPSHVKIGLLRVATRPYYPNPLLCYGCVRFGHPRVRCPGPKRCVNCSAEHELLEGEVCSFAAHCINCNGPHRPTSRQCPVFKKEMEVVRLKVDQNLSFPEARRRIEQDLGSYAAAAAQQTADRKRLDELEKKMEQKEALISQLLVKIQDKDERIEQLLLQINRMKTVENQDSQQNTPTQPLKSCQANKPSEPVKPIEAIQKAREQLTTATRMQLRNRSPATTQTAGTETRNRKKKHNRSTNGSPGRQSPPPKKTPAEEDPNQEELSDNGIEIEETPPSQSFR
>I_Ele9_pol#LINE/I 1414-5774  via tfasty with I_Ele20_pol, 1 frameshift. [Aedes aegypti]
DAPLHTPTDQRHQPSNETNSENNRFEGRECVVPPSLSQARAQQAGGSIRDVLPQPVDGESPSAVDPEEDIVYTPNPPSIPLRIPIHSHNVSNLSSINVAINHPEMSVDLPSPTACPLPHAITISRSLLRGSVCSEVGNLRHTNVEPSQSYRLSAGETHRHRSNSPQPPHQKQQTRKISSERGSRRGEGEREVTSPLPRRGVDLRGVECGTSNECLARSVSSWHPVDSQTRPLSSSASSSSSSTKSNSQADKCYALQWNIRGLRANINELKQLIHEYEPLVIALQETKANSRSVPSHFVGSNYTLILQTGNCQYWQQGVGLAIREGVPFERIQLDCNLQAIAVRIHLPATVTVVSIYVPPSTQQCQAEMNKLFEQLQGPALILGDFNAHHMAWGSQTENSLGRFIAEKSLTKQMIILNDGTHTRIDPATGHTSAIDLTICSEALAAKYVWRTLTDTYNSDHFPITVSIRGWSHSLTKKRRWLYDQADWATFEQTIANSIKVGEDIGVDEFANRLLSAAVASIPRTSGRVGPKSAPWWNSQVEEAVKKRRKALRTLKRKKKTNSDITEALKNFQQTRTAAKKVVQNAKTQSWENFVAKISPNSTAKDMWQTVNKLRGKQQNNTAIIKRSSGFTDNVEEVAEELAQHYSKISASTSYPPLFQRAKEKAEQNRMNVLPNTEDIYNCDFTLNELLWALDKGRSTSTGPDSIGYPMLQRIPLSVKSALLDLFNRIWHSGVFPASWRTGIIVPIPKPNSNDSGPAAFRPITLINCMAKVFERIVNRRLMTELESKGRLDKRQHAFRAGYGTDTYLAELERSLPENNEHCLVASLDLSKAYDTTWRYGILRTLRKWRIGGRMFNILNSFLTDRTFQVQVQGHLSRIMPLENGVPQGSVLSVTLFLVAVQPVFRVIPNAVEILLYADDIILIVRRRKEETLYRTLQAAVKAVSKWAKSVGFRISPSKSKIFYGSPNVRRAPRNNICIDQVPIPKTNKLKIIGITIDRKLTFQQHCKTIKSSCESRLRILKIIGNRLPRGHRTSLLRIGSAIITSRLLYGIGVTSRAENAVIKILSPIYNQMVRYASGAFVTSPVLSVMSEAGTLPFHLLVLQSVTQVAIRILEKNEAAGDLPIIQRVFSRLEEVMNISPPNISIRTRLTDRIWHKPKPQVVWTVKQQVKAGDPPEMVRPIVHELLSGRFNRYTVVYTDGSKSNGTVGAGVFGENISRSVGLPPQCSVFSAEAFAIKLALNLVENSKELLILSDSASCLAAIESGKSQHPWIQGIEDALHNRVVYLCWIPGHAGVAGNEEADRLADEGRHRTPMNVALPGKDTKKAMKQAIRQSWESQWSLLRDVKLREVKFTTEKWPDHANPIDQRVLTRLRIGHTRITHEFLLKRTCPPVCDCCGTTLDVRHLILECRKYDEARRQHGIDPTSLRVALSCDSENEEKLLKFLRDTNIYKYV
>I_Ele10_gag#LINE/I 654-2231  [Aedes aegypti]
MVTGPGGPPPWGEAPQLDGAISRRVAGSFSRATLPAFMDRDGMYGDLHVLRLQGVNKNVLPHAPFMIRKSIQAHLGANIEGAYPEANGNSYALKVRNVRHFEKLLMMTKLSDGTPIEIIEHPALNTTRCVVSCRDVIDESEQKIAEELKDQGVKEVRRITRKSGETRINTSTLIISLRGTNRPEFLDFGYIRCRTRPYYPSPMQCFNCWAFGHTKSRCKIEKGICGTCSGDHPFIADKPCTEAKYCSKCDTTQHAIRERSCPAYRKENDIQRIKIDQDVPYPEARRIYEESNDPKTYAKITATGTSSDFLNLNQKIDELMEMVKTRDRRIEQLESALNGQNTSTSNLDGNPPAVDCIPSXFQAMLDKQEAMFNRVIKNLIAANIEMQKEVQHLKSSINTXTSIAHNALTQEDSVIEFATPIESALSKTLTPEKQQPNDDPLDIYSDDSHPLDNIPSSSKHMGTPRPPVSPMIRKKETSSLTKSHPLTPKRPYSKANSPDKLQDSVNASKVQRQSSLTRKNVSKNSK
>I_Ele10_pol#LINE/I 2285-6625  [Aedes aegypti]
MTPQPTNEDNCLDSTSSSRGAVGPEAKPLPEPSGRLLHSNSKLDEENLKKNSASSSRGAGRPKARTQSEQPGRLRHSTDEDPAIAPGSWGTDNADVLPTPVLADNPQRRGEAEGGTDKGENTYSPQDVEGIKTVMPLDLGTHKGGNPCPPKDSVGVKNHQPTLPEHSTSTDEINTFFPTVGTSLPLVGGRTPPATGLALSCSAHSSSPPASSTQTSEANRFCTQSNVSSSFTGNTNFPTPSLPRPTNFILQWNINGFLNNLGDLELLTQTSPPWCLALQEVNKVTAEQLNRTLRGQYEWTIKKGNNFRHSVAIGVLRTIPFEFLHLRSDVPAVGVRLQNPLNISVINVYFPCGALPNLHEQVKSLLEAAPGPVICLGDMNAHHPAWGGNRADRRGTTLLDLFEELDLVVLNDGSDTFYNGHYSSAIDVTAVSRSTLPKLQWHTITDLHGSDHHPIQITIAASSPITTRRPRWLYERADWEIYNASVREALRAADPTSIPDFNELIHKAAEAAVPRSSNKPGRKALRWWTDDTRKAVKARRKALRAAKRLPQGHPEKENMLNRYRMLHIQCRQTIRNAKRTSWEEFLEGMNASQTSAELWNRVNALSGKRNLAPLSIQLPDKLVTDPVAVADTLGQYFSSLSAIDSYDDLFKRRYNPSTDSVLNFPVPYDLRGAAINEPFSLQELKFALGRSKGKSAGSDGIGYPLLKNLPFPGKIKLLEILNQIWLSDTFPAEWQESLVVPIPKANNPTRGPSSFRPIALTSCLSKIMERMVNRRLKQQLEAAGHLDRRQHAFRAGYGTNSYFASLGDILHNAHSEGLHTELISLDLSKAFNRTWTPLVLKQLVEWGMSGHVIHFIKNFLSNRTFRVLIGDNTSKLFAEETGVPQGSVIAVTLFLVAMNGVFRNLPSGIYIFVYADDILLVISGRTPVRTRIKAQAAVNAVVKWTSSVGFTLSAPKSIRCHICNTGHRITGSPITIQGQPIPLKKTVKTLGIIIDRGLTFKQHFESVKTNCRTRLNLVRTISRPHRSNNRAIRFRVAHAIIDSRLVYGLELTCIATGRLLQTLAPVYNTYVRIISGQLPCTPADAACTEAGILPFRHVISATICKKAAAFAEKTSGNERIFLLSEGCRILRTVANVDLPPVAKIHWYGDKSWQSGKPKIDSTIKDRFRAGDNSITLRASVIEWLRNNYPNHLHRYTDGSLSNRGVGIGIYGLDVSRSLSLAPLCSIFSAEAAAVFIAATTPAEQPILILTDSASVVSALQSESPAHPWLQGILRFAPPDTTFAWIPGHCGVPGNTAADRLAGAGYASTRYTNKVPLQDIKRWITKSVNAQWATEWSQQSTCHLRKIKQDTQPWTDVISLKEQRIISRLRTGYTRLSHNMEGLPFHRICTTCNTHNKVEHFLCVCPQYEFHRRNHGLTGSIRENLCNDTTTLNTVICFLKDSGLYSQI
>I_Ele11_gag#LINE/I 1-849 Fragment [Aedes aegypti]
GXIRCRTRPYYPSXMQCFNCWLFGHTKMRCQAEKAACGTCSGDHXIAENRECSNNTFCKTCNXEDHKISSRACPQWQXENAIQKVKVDQGIPYPAARRIVEQNRNGRSFXAVVGPATTESNQQINGRADQHASALAAKDAEIAELRXALAIRSAPLAVANNEIEQLKSIVAEQAKQIQLLTEQVSVFLKAVMPAASFPNLTEPXKTATXAVLPVSNNTNTASSASSTISDXPINTPSSNPPSNKDIPGFFTTSSEKSSFTTNTKTAPYQSFPPKRKRNCKRHS
>I_Ele11_pol#LINE/I 1115-5671  [Aedes aegypti]
MPQPASPDRLRHRAQNNSPSTSLDSQGANVPDVLPQPESLGRLRRLEGNMDEELLFHFVHCPARTPGSQSPVSAAVSHSGTGGHSLALGEDLEEGNQASEPTSLDDEGSEGSQAIGTRRVLPATPMDYAGSQVASTSSVEDLGHPGNPNPGGKSHXAVVSSSDALLAPXSTVVAFTLDDVGSQGLQALGTHRALPVTPKDNAGSEATSKHRSIQALIPGNPTHRLSPLATPFFPAVGTSLHLVGPSSGPAICRALSCSCTESDTEIPSDRHSTAIESPPLIVSSPSAYTVGRNVVHPCTNTTPNQTLSHPTPALPEPARFCLQWNMNGFFNNLADLEILTSSDPPWILALQEVNRVTLEQLNRSLGGRYVWNLKRGSNFRHSVALGVLKSIPSAFFNIDSQLPAIGVKVQGSTTMSVACVYLPCGNIPNLRGEVEKIIQQLPEPRMVVGDLNAHHPAWGGSRSDSRGNTLLNLFEDSDLTILNDGSPTFFNSRYSTAIDVTAVTRSEIGRFSWCVNSDPHGSDHHPLQISLAVEAPVTTRRPRWLYDQADWTAYNNSISVSLRSRHPSNMVEFTAVLTEAAAVSIPKTSSKPGRKALRWWSPEIKKVIKARRKALRAMKRMAPDHPNRDVIVDRYHIARNTCRQAIRDAKRACWEEFLDSINATQSTADLWAKVNALNGKRIVTPPTLDIDGNSTADPEIIADGLGKYFANLAAFGTYDPVFVRQTGATANDINSFTVPEDNAQLPINQPFSFRELQYALSRSRGKSAGPDDVGYPLVKNLEGHGKLILLELINQLWTDDSYPPEWRESFVVPIAKPSNQARDPANYRPIALTCCLSKVVERMVNRRLTHHLQQRGLLDHRQHAFRPGYGTNTYFAALGEALQEAKSLEHHTEIVSLDISKAFNRVWAPLVLEKLASWGFTGHVLHFVRNFLTNRTFRVVIGNTKSDSFREETGVPQGSVISVTLFLIMMNGVFQNLPNGVKIFVYADDIVIVVSGPTIAATRRKAQAAVTRVAKWASSVGFTMSASKSVRCHVCSSGHRVSGPPININNQAIPIRKTAKILGVTIDRGLTFKPHFEGVRANCRSRLNLLRSLSRPHRSNNRNIRFRVATAIIDSRLLYGLEITYLAMNNLIDALSPIYNRYIRIVSGLLPSTPADAACVEAGLLPFRFLVIITLCTKAAAIAERTAGNRRTRLMEEADHQLENATGSRLPPIAKTHWCGERDWRSSNLKFDDRIKQSFKAGDSSIRLRKTVAEILRKDYSAHQRRYTDGSLSVRGVGIGITDENLATSLSLPGQCSIFSAEAAAILYAATVPTTSPIVIITDSASCFTALQSETPRHPWIQGIIKKAPCDVTLMWVPGHSGVPGNATADFLAGTGPSGPRYSTRVPLADIRRWVKSTIRQTWQAEWANSRGAYLRKIKRSTDAWTDLNSMKDQTIISRLRSGHTRMSHNYGGNPFHRSCEICDTGNTVEHFICNCPAFDSPRQMYGISGSIREALQDDLSSMAALISFIKDAGLYFKI
>I_Ele13_gag#LINE/I 302-1999  [Aedes aegypti]
MMPGSGSAPHRGDPGGPGGGGNSPRNMFQGTYAGQRLPTYMDKEGIAGSLQVLKMQAVGENTSLPNDPFLLRLSVEKCVGGPIDGAFKENRGISYALKVRSNVQFQKLLKMSRLIDGTEVMITEHPQLNTTKCVVSNYDSVGLSDAYLKEQLASQGVRDIRRIQKRNSAGVPENTPTMILSIVGTVIPEHIDFGWTRCKTRSFYPSPMLCYHCWEYGHTRKRCQETHQICGTCSQVHPEDNILNGSNSRNAEDDEFSNKKPHCTNPPFCKNCKSNGHAVSSRKCPVYSKETAIQHIRIDMGYSYPQARREYEAQQGATGNSGSYARIANLSKDKEIADMSDVVKKLQDDSKRKDEKIAELEKIVQNRSVGKRLDQVQKNGTIEDLTRRVIQLTEAVEQLQKTVQEKDREISRLRQYETLYTHMEPSQSITTVSQSLVPTPDCASIPATPAAPYDLRDPRIRSRCSKWIAENNSSENGPAQNTKNNRRKQKHRKQYESNKDRGFSSEESMKSFHSKNSMQTTTSVGTSASNPTKRNHPTTDSDSDSNGRTSKSKRSGVDGTDTIEIE
>I_Ele13_pol#LINE/I 2065-6567  [Aedes aegypti]
TIIFSTQKKPVKKKNRELTEPTSPLSTTNTTRTRRAAVKAPDSRGPVSADITPQPELADNLRHPRVILAYGTHKGIQTRSPFSPDTSQDRKAPGGVTGRGTHKSSNTCTPEDSEGTQFNDGHQNRHFHVYSPLHNVEVKPVLRRYDLRTRIKPPRNRLDTPSSSKVFITSRLPPLGPEVCNADLYDQLHRVRFGASASIKAGPSNLSCVSASRKKFKNVNPLDPPSDSTGTSNTATVSQSRFTCSGSVSRSAIVSEKSDCSSPPPENSEPERASGVTSSDCNHLRKTSNIGNSEQHTWILQWNMNGFYNNLPDLQKIVVDKDPSIIALQEIHKATTESMDNTLGRKYKWITKINRNIYHSVGIGIAAELPFSNITLDTNLPIIAVRLSWPFPVTVVSAYIPNQNIPDLENQVKQLIGKLPEPIILLGDSNAHHQAWGSRHTDARGAILLEIAGQNGLTILNDGSPTFMRGQHESAIDISLASMTIMNRISWSAECDPMGSDHVPITILLNTTPPNTSRRPRWIYDKADWSGFQSSINSSFKNSEPKSITEFTEAIHEAAKTNIPKTSPNPGRRALRWWSEDIKKAVKARRKALRAAKRLPAEHPDKEKAVLKLRTARNECRQIVREAKERSWAEFLDSINDSQSSAELWGKVNAIQGKKTKNGIALKIKNQTVRDPAIIADALADHFFNLSSLQRYPEAFLKRHSGAKTAIADFVIPSGTDESYNQTFSIQELQFVLQKCCGKSSGPDEIGYHMIKNLPMHCKAILLEMINKEWTSRTFPESWRHSLIVPIPKSTGPSSDPRNYRPIALTSCMSKIMERMVNRRLMEYLDINGKLDYRQHAFRSGLGTGTYFATLGQTLDDAISCGEHIEMASLDLAKAYNRAWTPSVLEKLAQWGVTGNLLAFLKNFLTNRTFQVIIGNHRSKPVAEETGVPQGSVIAVTLFLVAMNGVFDVLPKGIFIYVYADDILLVVTGKHPKAIRRKLQAAVNAVVKWTDLVGFDISPEKCVRMHICAQKHRPPQKPITVKGKPIPTKKFAKILGVTFDRNLSFRPHFEAIKKSCANRMNLLKILSNKRTRSDRRSRLRIADAIICSRLLYGVDITCRASDELVSILSPTYHNAIRTISGLLPSTPAKAACVEAGVMPFIYKVATTIGTKAVSFLERTKGDGSPAFLATEADRILNSVAGVTLPSVAELHRIGPRSWRASEPLVDNFIKNRLKKGSNPTIAKSLFNERITTKYANTEIMYTDGSKLSNKVGIGIAGKHIEDHFSLPDSVSVFSAEAAAIMQAVSHRSTKPKLIVTDSASCILSIRSQTSRHPWIQVTQSLLETRGTPKVSFMWVPGHCDIPGNESADRLADLGRTSRRLTSEIPGADVKSWLKTAVKHAWSKDWWSDRTLFIRKIKGITTPWKDRIDRKEQIILSRLRTGHTKVSHNMGGGRNFRIICDNCGTANTVEHMLCVCPALESYRTQYNLGGIDTILSNDLAMETALIHFLKDTRLFTAI
>I_Ele14_gag#LINE/I 381-1676 via tfasty with Mosqul_Aa2_gag, 2 frameshifts and 2 stopcodons. [Aedes aegypti]
MLANGHPLHPGDPGGPGGGFGKVGNRVLGDYTGALLPEFMDREGTAGQLQYLRMEATAGTMPQDPFLLRLSVEKAIGGPIFGAFKENKGMSYVLKVRSQDQVNKLLRMSQLQDKTPIRIAEHPRLNQRECVVTNHDTIGLSDDYLLQQLSSQGIKGLRRITRRETGMAKAVVNTATIVLTIKGTVIPEHVVFGWSRCKTRLFYPSPMLCFRCWEYGHTGKRCTSPQQHLRTLLRGTPGRTNPRSYKHPGRSRQCPRCVENAVPVHRRAVAARPVQNRRQHSVSSRKCPVYKKEQAIQHLRVDVDIPYPQARREYEAQQASKSKWCQLLPVWSVPARTLKSTVxRPWWLQNSADGEEKRMAEMERALQSRTVSDRLEAVKEHGTIGELVKQVATLTETVQNLQNALAVRTNKSRIKVAPSLSFxAGNQLPSND
>I_Ele14_pol#LINE/I 3200-7057  [Aedes aegypti]
MPGPALGGAPLESATRTLCPPNGFSQTYFSTAAPSPLPVVGSTPGPTLGGALSGSVSSTFLGSTNSKETSLSSFPVPALPTSHNFILQWNLNGYRSRLCDLELIIQNNQPWILALQETNNISADEMGRTLGGQYAWTVKRLANQRHSAAIGILKGIPHKILDLPSDLPIVGIQLLGSPSVSVACAYLPGGNIPNLHGQIQNCLQALPEPRIFLGDLNSHHPVWGSPKADKRGSTLINAFEEEDMLILNDGSPTFFNGHFSSEIDVTAVSLSFARNIQWSVSSDLHGSDHFPIRIALTTGASIPKNTRRPRWKYDKADWAEYDLLIRSALRNSPPDNMADFISTIVESAKATIPRTSSTPGRKALRWWSDETKTAVKARRKALRQLRRLPLDHPDRQSTLENYRKLHLECRNIIGDAKKATWESFLESMNASQTTSELWNRVNALNGKRKTTPLTLQVQGNAISDPEAVASELGKYFASLSAIESYETHFXNSVKPSTSAINNFIIPPNTADPEMEQPFSARELSFALSRSNGRSAGPDEVGYPLLKNLPSVGKLALLDLYNKIWANNDFPPAWKESLVVPIPKANIPTRDPTKFRPISLTCCAGKVMERMVNRRLRYHLEANGLLDFRQHAFRQGYGTSTYFAGLSDVLKEAYDKGNHAEVISLDISKAFNRTWTPLVLEQLAAWGIGGRTLHFVRNFLADRTFQVVIGNTKSSTFPEETGVPQGSVLAVTLFLIAMNGVFSRLPKNIYVFVYADDIVIVVCGSTPTMTRIRAQTAVKSVAKWASDNGFQLSASKSIRCHICPSGHRITGPDITIDGQPIPLRKTVRILGVIVDRALSFRQHFDTVKSACRSRLNLIKSISRPHRSNNREIRFRVARAIVDSRLVYGLELTSIAMDRLVEVLSPIYNSYIRIISGLLPSTPSDSACVEAGLLPFRIFIRSSICCKTAAFLSKTAGEDRVFLLDEGNRALSTAANLSLPPVTRVHWLGDRSWRSVPPKIDNKIKNSFSAGSNSAALRRSVAELLQTSYSDFALRYSDGSLTSAGVGIGVAGDIPDVSMSLPSQCSVFSAEAAAAFIAATTPSDRSILVLTDSASVISALQSDSPTHPWIQAILKYALPDTVFTWIPGHCGVPGNEMADHLARSGLSGQRYTSEVPFMDLKRWIKSTFRQHWEDSWYRTRTLFLRKIKNSTTTWSDLPILKDQRILSRLRTGHTLISHNMGGGPFHKECESCHIPASVDHVLCACPMYEHLRQIHGLSDNIGEVLRDDATTIAALLSFLRDANLYSSI
>I_Ele15_pol#LINE/I 679-5886  [Aedes aegypti]
MANSRGAFGLEAIPQPAPSNRPRHLSSISDEENSATNSRGADRPEVRTQPEQSNRPRRSSDENINYASFSPARAPGSLGPSSADDFSTPELVDNPWRWGKSGRGTDKGINTHSPTDHVGVKLNRFSGRTRGEILVPRRTSRESSQQTKPSTPQPVLPGQPETSVSGGKTRSNRSSSTQTKPSFLPAGCIKPHRSEALAKSRSNKIKITLLSSNQQTHAHGGHPTTTSFEDPITMGKSDSHFLSSHQIQTATCQPALPGHPELLVSGGKPHPRSPTPDNNEPSPLLAGRVKCPLDGALAKNRPLSNQQPPTHGKSPTPTAPDHPITMGNMAPYTAPSSPQSSSPLWESSTSHANASTGTFSKDPVSPTDEGPRSTVEPNRISNIRKLPSDCLTNSEKYDSYIASSLGPGALLAPCCSTNRASLAVDLFGHPMHSNLGGKSQQLAFSHEIACDVDINSNSNLETTSSWGDSRPAAVWGLERLNRFQHSAGEIGSETGNNPNADGRCISAPSPPSRLSETHSSTHSHPNVNRNARLILQWNINGFLNNLSNLEMLVNQHEPLVIALQETHKASVDIMNSRLGKKYSWHAIRGSNFYHSVALGTINEIPYEILQLDTDLPIAAIKISWPFPMSIVSFYLPNGKLTNLKNRLIDTFDKIPDPKIILGDGNGHHTTWGSRVNNARGSAIFETATETGLCILNDGCKTFIRGRVETSIDISLASHNIIDRLLWSVDNDLSGSDHFPIWIQLNSSPPKTSRRPRWLYDQANWKIFQDRMEEILESSPPSSIDHFSNSIIEAATAAIPRTSPTPGRRALCWWSETTKKAVKARRKALRAARRLPADHPEKIAAMEKYRDANNKCKFIIREAKEKSWTSFLDEINDNQSSAELWSRVNAIQGKRQTRGLVLKSGNQTTRDPILVADALADYFGDLSSFHRYPLDFQKKHQPANAAFAMTQVPGFPVQNFNKEFSMDELLFALSKSKGKSAGPDQIGYPMLKKLPPIGKRKALDLINSEWLAGTLPDSWKCSLVVPIPKACGTNYDPSDFRPIALTSCLAKMMERMANRRLVEYLEKNDLLDNRQHAFRAGFGTGTYFAALGDILNGALERNEHVEMASLDLAKAYNRAWTPGILKCLMDWGVTGNLASFVKNFLTNRRFRVSIGNHQSKEIPEETGVPQGSVIAVTLFLVGMNGVFQSLPKGVFVLVYADDILLLVTGVHPKMVRRKLQAAVNAVAKWAIKVGFEISATKCARLHICNSKHQPPKKPITVNGTAIPNKKTVKIVGVTLDRHLSFKAHFDNVRSACKSRINLLRLISGKRKRSDRTSRIRVANAIVNSRLLYGIEITSQRFDELISNLGGTYNNAIRIISGHLPSTPADSACAEAGVLPFRYKLANSIGSRAICFLERTKNDGSEACIEIQANQILRSVAGIELPSVSERHRNGARSWSARKIKVDNYLKQKLKKGGNPRLAQALFLDRIRTKYRIYNVRYTDGSKALGKVGIGWCGIGFRESRSLPSQCSVFSAEAAAIFQAILQPSDLIGPVLIATDSASTIAAILSDTNKHPWIQEIQDVLDDEENITLMWVPGHSGIAGNEEADRCANTGRDSERLTDIVPSADLKLWLREKVNDAWRRKWQSERNLFTRKIKGDVRKWEDRPDRREQVILSRLRTGHTRVSHSMSGGPNFRRICETCQVHNSVEHFLYTCPTLELLRKQYDMGSIRTSLQDDRSSEAVLFRFLKDAKLFDEI
>I_Ele16_gag#LINE/I 380-1708  [Aedes aegypti]
MSGGSSGPYGGAVGLQPRRNKPDWMLSPNDLGQVMVLVLRRKVNDTETSGQRTQDTPLPDTFIVGTSIELAVGTKEARALNATREGRGSRYLLRASSANVIEKLSKMTELTDGTKIEIVPHPTLNTVQGIVFDADSINRDEKSILEFLESQGVQAVRRIKKRVNGALRNTPLLVLSFRGTILPDHVYFGLMRIKVRVYYPSPLLCFNCAAYGHSKKVCQQTTICLRCSTPHDVPEGEQCVNPPNCLHCKTDHQVTSRDCPKFKEEEKIIRLKTDQGISFAEARRICAEETKKQTFAGIIQNQMHQELAAKDQVIAALQKQVAVLTKELANLKKLLKPSAQNHSPAPQEPRPSASSERSVSQTTQSVSNTDRLSRKDQSFISPPARRREIRKSNKLDYDVQTRSRSGKRPIETSPTEVINNRGKRISAQPETGNKPTNIETNYG
>I_Ele16_pol#LINE/I 1704-6794  [Aedes aegypti]
MANNHQREFFTNFQNDDPAMEKDTQMEERISHLCRNNVVSSLTSEEYDRINNHISKPSTSRTYFDSPSARPTTSTLIRDVPVQSEEPLAAVDVVRPSPRASISSNYVCIKQSKFGFNSSKRGIDTITRPTVKNTMSPTGKPRQGEGECIVTSPIPSMEEHIRWISNGDSHKRITLRVSSWNQRSNSTKTTRPSIPYDSPSARPTTSTLTREVPEHSEEPLAAVDVVRPLSRASTSTNYIPKKQFNLVTPQTKPDSGATIRPAVYSSISSTSVSHSTTNQGSTTTTVTTTKRLRSPTFSDSQCSNPTKTTRPSIPYDSPSARPTTSTLTREVPEHSEEPLAAVDVVCPLSRASIHSNSLQTKQFNPVIPPTNPGQEIHYHHRNNNNASPTSVARREGKSSVAYSSRTFLGTEEQGSMGEFRSCSWNQTEASHDVTCKSNAPPSTPRNTRFSIDADSPRSSSQMNGINSPRSPSRASDDSEASSLTAQRTESSFAIQWNICGLRTHLSELQILIKKYQPLVVCLQETNADYNRIAPSCLGKEYELLLSQSSTHGRQGAGMAIKNGTPFQRIWLQSNIQAVAVQLFAPTTITVVSVYLSPSEKDAVKLFGDLLEELPKPILVLGDLNAHHAAWGSKITQPSSRAKTRGEGILDLVVRHNMVVLNNGSHTRIDPVTGASQALDVSICSTSHAAKFSWKTLLDYSGSDHLPILLETYCNQFTSKCRSRWIFEKANWQLYEQLTTDSLRPGYTLSVDEFTDRIITAAEASIPKTSGNIGQKSVVWWNPEVALAIKSRRKRLRALRRLGDDDPQKIVALKQFQEARSHCRKAIHEAKQSSWDAFVESINPDTPASQVWNKINKLQGKRQRNTISLNLETGHTNNGPTVANALADEYQQKSSDANYPERFRKKHKKDKRTRCVTQRPNLHKRYNTDLTVEELMWALDRRVGSSTGPDNVSYQLLQRLPFSGKTALLELFNRIWASGCFPAQWKIGTVIPIPKPGADRSKPEGYRPITLLSCLGKLFERIINRRLMTELESTGKLDSRQHAFRAGKGVDSHFAKLESIINLQNDEHVEIISLDISKAYDTTYRPEILHTLTKWRVTGRLMNIISSFLTDRFFRVAANGSLSSLRRAENGVPQGSILSVTLFLVAMQPIFNAIPGDTEILLYADDVILIVKGKNHVTIRSKLRKAVAAAVEWSSNIGFTIAPTKSKLLHICHLKHRKRGKAIKIGSNPIPHTRYMKVLGVLLDCKLNFLKHLTSVKQSCRKRLNIIRILGYRLKRSSRSSLLKVGSALILSKLYFGIGLTSINFDAMQCTLEPIYNDVARQASGAFQTSPITSIMAETGWTDFYSALIQRLCVLAVRLAEKNEEANDYPVVQRARRLVLEKTGWSFPKIHETLRSSDREWYVPPPNIDNELKRTIRAGTNHSVAVQKYKELVNVRYRTHEQIFTDGSKYGDQTGAGIVMNDSHFSYRLPDTCSVFSAEAFALMMAVSKLNGQAKNIILTDSASCLEALAGGRSKHPWIQAIERKIVGQNVTFSWIPGHSSIAGNEAADQLAKQGRHQPLQDIPLPAQDVVREIKRRIWTQWESQWHQQRCVLRSIKPTPGKYPDRKNPSEQRVLTRIRIGHTRLTHAYLMDHNDPPNCRHCGVQLTVEHILVECRGLQSNRKNCGINGSLAEILAYNTESEKAVIKFLKECNLFTKI
>I_Ele17_gag#LINE/I 341-1816  [Aedes aegypti]
MALAPDEFPSFGDPGGGSSNFFDGDFAGARLPNYMDPEGTYGAIQVLRMEATSGRLPNDPFLLRSSVEKCVGAKIDGAFPEGKDGITYALKIRSKNQISKLLRLTSLSDGTGIKIIEHPTLNVCRCVVNCQSVAGLDDKTIEEGLADQGVRNIRRITRRNGDKVENTSTIVLTISGTVIPPNVDFGWIRCKTRPYYPAPMLCYNCWNFGHTSKRCQQTRPTCGTCSKDHVIDKETRCTAEVFCKRCDRHSHSLSSRKCPVYCKENDIQRIRVDLGISYPQARRRYEQAHGQSSFSNVTTAGKDQQIAELSSKVDQLQQEMEKKDRRIVTLESSLSTDNSSMIADLLQKVDLLTSEMKRKDDRIQALESDLQNNSRMGLVRKHGTIEELVSKVTHLEEQLSHKEREVNVLRTIFNRKNQLADSKDALSSSEIPSTQDRIQTAEKTKQQLSQKKEKKQKKKEWQPTLMYESDTSPIPPRQKNFGENTKERSLYD
>I_Ele17_pol#LINE/I 2143-6171  [Aedes aegypti]
MPTCSPVIFQDSRGPVGAEATPPPEPADNLRHPGSSGRGTHKGRNAYPPVDNVGVKTTSTSTSFVNGTHKGIRTRPPLKDNVGAAVTQDNPVSSPSSETPSAKTISSSSTTSSPRRNRTTTSTNSGSPNSMATINATKRTSFVLQWNMNGFHNNISDLECLIQSNPPVILAIQEVHRTTVDKMNRSLGGRYRWTYKRNSNVYHSVAIGVLESIQFSTIQLDTILPIVAVTLNDPFPVTVVSVYLPCGKIPNLKNAFSQVLESIQGPKLILGDINGHHAAWGSPRSDKRGETLLELTEAMDLVILNDGSITFTKGQHESAVDVSLASPSIVSRLLWSIGDDPLGSDHHPITISLCQLPPETTRRPRWIYDQADWTSFQTAIDEYLCISEHNNLQDFIQAIYQAATTCIPRTSAKPGRKALPWWSPETKQATKARRKALRAAKRLPVDHPDKESAISLYKIKRNECRQVIRDAKDQSWENFLDGINSNQSSSEIWGKVNALSGKRKTRGMAIRHEGVITRDPGIIADALGYYFASLSAFDKYSDNFIRQNQATVDDLDRIQIPDDTAGLPINEPFRLIELEMALAKCKGKSAGADEIGYPMLKNLTPRGKVTLLRLLNKEWSGNTLPQEWKSSLVIPLPKNGSSTSAPEDFRPISLTCCISKVMERMVNRRLTHFLESNELLDHRQHAFRSGHGTGTYFATLAQVLSDAKTKDQHVELAALDLAKAYNRAWTPGVIQQLNKWGLSGHILHFLRNFLQNRTFQVCIGNHRSKHFSEQTGVPQGSVIAVTIFLVAMNDIFTSLPKEIYIFVYADDIMLIAVGSTEKALRRKLQASVNAVAKWATKSGFVISTDKSAIMHLCKASHRPIRSIVSANGLPIPLKKSVRVLGINIDRHLTFHDHFKKVKQSCKTRLNLLRILSKRHKMANRDVRLRVASAILDSRLLYGIELTCLSTDALTTTLAPVYHQSIRIISGLLPSTPADAACVESGRLPFERLVTETVCKRAVSFLEKTTPCSGGVLLLDEANRLLQVHANKVLPPVAETHWNGARSWNSPRLKVEMSIKTRFRAGANSQAVTTSVAELLGSKYQNYTHRYTDGSKVQDKVGMGITDHENSRFYRLPDPCSIFSAEAAAVLIACTIPSPNPIAILTDSASVVTALSSDVARHPWIQAIQMQAPPETVFIWIPGHCGIRGNVEADRLAASGRSATFYTRKVPGHDIRRWISSSLRSSWAVSWHNMRTPFLRKIKNDISRWEDPKKHRDQRILSRLRTGHTKVSHNMGSDGPFRKICSACNVPNTVEHFLINCPQYLAARASHGIAESIRSALNNDSDSIIRLMNYLKHIDLYHQI
>I_Ele18_gag#LINE/I 404-2092  [Aedes aegypti]
MSDQDQFPPFDDPGGGPSDDSARNIIHGSYAGRTVPTWLDPSDEHGKLTVLKLEGENGPLPSKPFLLRTSVEKWIGGKIEGAFRENRGISYALKVRNPKQVEKLMAMKTLADGTKVKISKHPVLNKSRCVVSCLDVKDASDDELMDCLAPQGVSEFRRIKRRTGKEQYENTASIILTIEGTVVPNHIDFGWLRCKTRPYYPAPMVCYQCWSFGHTKKRCQQSQPTCGNCSQGHVTDETNRCNTDPFCKRCNSASHSLSSRKCPTYVEENAIQRIRVDMGVTYHAAKQIFEQSNSSRSFAAVTSASKDHTIADLSSKVDRLLQETAAKDKRIAALESASIGNTTENVGKAKLDQLIQKVNQLTKEIETKDQRILALEKAQHIGSRLDLVRQHGTIEDLIEEVAALKGDLAKKERENLLLRELYGKKVNQNKRSTQNLNSLSPKSSDSLFTQKSVQSLPSPDYEPIQSSNVSNDEVRKWLQTTAANNPVTDDRKYKNKSKKPTASNENEPICTPSVAPVDKTSKRIHSSTDSDDSIGRSKTKINVKCPDAIFVTSSDGDDETMQS
>I_Ele18_pol#LINE/I 1995-6554  [Aedes aegypti]
MTRLADLKLKSMSNAPTLYSSPLLMVMTKRCKVNHAYDLPALLFTNIELILSISSKLPMTNTHYNRAAHSHKEESTGTPTTTNDTDINTHENRTTCEASGSRGPCSAAVFSRPELQDSSRHSNFPTVFETQKGSTAYTPQFPLYSSGSRGPVSAEVRPPPEPADTPRHFRSSGRGTDKGHATHSPKDTVGAESLATNAQATTGSKNNQQSRRSARIRKRKSKISTPSADNENNLLSRIGLDAASLAHDKTAPLPEAACNAAIYDAIHLLRYGIEIPQQSSSSYLPSKRISSVEQQALTVSRCTPRRTTTDMRNSNTRFAVQWNINGFTNNLADLEIICKNNPPIALALQEVHRTNCQRLDRSLSGKYRWIYKCASNIYHSVAIGILAQLSFTQIELNTDLPIIAVRLNAPFPISIVCFYLPCGNIANLEESLLNVWNEIPEPRILLGDCNGHHQIWGSPKSNPRGMTMVSVAESTGSTILNDGTKTFIRGQIESIVDISMVSATIANRFLWSASDDPMGSDHFPITIYLNEQPPATSRRPRWIYDQADWASFQTRMDSMLEANEPSNISDLIDTIHQVASETIPKTSSIPGRKALPWWSPEIKKIVKARRKALRRAKRIPDGNPQKEIAFSTYKILRNNCRQSIRDAKHQSWTKFLDTINDQQTSAELWQKVNALNGKRSFAGLAINHQGVTTRDPSEIANILAEHFASMSAIGRYDHAFVRINNVTMDSLSSFRIPPESHHEINLPFSLAELNFALQHGKGKSAGPDEVGYPMLKYLSESGRSLLLRLLNNEWTRKTLPANWKHSIVVPIPKNSGYSNEPDSFRPISLTCCISKVLERMVNRRLIRYLEDGNYLDHRQHAFRPCHGTDTYFASLGQVLDDALNDNNHIEIATLDLSKAYNRAWTPSVLRQLANWGLSGNILHFIKNFLTGRTFQVLIGNHRSNVTGEETGVPQGSVIAVTLFLVAMNSIFKSLPKGIFIFVYADDIVLIAVGKHPVALRRKLQAAVNAVNKWAHSSGFQLSAEKSARSHICTFNHRPPKKAITIHNTPIPFKKSLRILGVRVDRRLTFNDHCSEVKRNCRTRLNLLKILSRPHTTNNRNTRLKISRATIESKLFYGSELTCRASDTLNRTLAPVYNNAIRIVSGLLPSTPAIAACVEAGMPPFNYALVTAVCRKAVSFLEKTCKSQSEVFILKEANRLLISVANQRLPPVAVIHWTGARNWRAPLPNVDLSIKNNFKAGDSSTILRSTFAHLLATKYAYHTQRYTDGSKARGAVGIGILSGNQNFYHRLPNMCSIFSAEAAAIYLAASLPSDDPIAIFTDSASVISALNSQSSRHPWIQAIQSILNINNNITFIWIPGHCGIRGNESADQLAAIGRSNRNLYNREVPGSDVKKWVANTVRLAWSQEWHNRRNPFIRKIKGETHKWEDVPKLKDQQILSRLRTGHTRLSHNMGGDTEFRRRCDPCGVHNSVEHFICECPIFNYPRELYNIGSIRDALKNDPSSESATICFLKDAELYNNI
>I_Ele19_gag#LINE/I 381-1724  [Aedes aegypti]
MTDSSAGPFGGAAGLRRNKPDWMMDPNDLGQVMVLILRRKTDAADGQRVQDESLPDSIIVGTSIEIIIGKKAARALKATREGRGTRYLLRTSSTEIIEKLTKMTELTDGTKIEIVPHPTLNTVQGIVYDPDTINKDEKSILEYLDSQGVHAVRRIQKRINGTLKNTPLLVLSFRGTILPEHVYFGLLRIQVRIYYPTPMLCFNCGCYGHSRKFCQQSAICLRCSAPHHVSEGEQCTNPPNCLHCRTEHQVTSRECPKYREEEKIVRLKTDKGISFSEARRLCAQEAKSQTFSGIVQEQIQQELAAKDQLIATLQKQVAVLTKELSALKKMLRPATQSQSPAPRDRRPSLSNQKSSSLMAPPTQNSTQHSTDRPSRKDQPTTSPKAPRQEDRKTNKSSGGIQTRSRSGKRHMEVSPTEAAHSRGKRMPSQLDTNTTFVDIEMNNGPGPS
>I_Ele19_pol#LINE/I 1708-6666  [Aedes aegypti]
MDQGLHNKIRTVPYDYDSATIMDMKKEERNRPNTFDDSRNSMDSDKRPTTTTNTSSNTVVTKLKFQTITSEEYDRMHNLIVVPSTSRTSSYITTIDSPSARLTTPTLTEEVPEYSEEPSAAVGVVCPHLRASIPIHPISVKQPNPTFIPINTGFDTTLNSTTYSVWPTPLHAKSSESSAKVDSRKISYGTKRNSGIFRSSSNSNFHHGSIHQHKTDLPARCTRLTATIDSPSARPTTLTLTGDVPEQSEEPPAAVSVVCPHPWASITSNFIFEEPNTASVPIIPGFDARSRSMESNSTSPTSVLQHSHGNVHQPAAIFDSPSARPSTSTLTREVPDPSEEPLAAVDVACLQLSASIASFSPKDQSTATSLPTNTDLNIEVNSREVTTATTVPLQTSVEDSPAELDYSSYWNPIGTEFNNHIADLQSPLQTSTDSDSCVTETNENSPTFAIQWNICGLRSHLSELQILLAKYQPVIVCLQETNGDYRKLSPSCLGKDYQLLLGQCSAHGRQGTGIAIKNGTPFQRIWFQTKIQAVAVQLGAPIAITAVSVYLPPKDKEAAKHLGELLEELPKPIIVLGDLNAHHDAWGSRTVQSSSGAKQRGEAILELVVQNDMIVLNNGSHTRIDPATGTSQALDVTMCSTSHAAKFSWKTLLDFSGSDHLPILVDTLCKQNQPTRRTRWIFENADWPLYEQLTNNSIKPGSQFTVDEFTNRIIAAAEASIPKTSGRVGPKSVVWWNQDVELAVKARRKRLRALRRLKEGDSRKVEALKLFQEARSHCRKTIADAKQKSWDTFVEGINPDSPASQVWNNINRLQGKRQRNVITLNLPTGHTNNGEEVANALADEYQLKSSDANYPEKFRRKHKTEQRSIRKNQRPNLHKRYNVDLTMSELMWALDRRTGSSTGADNVNYQLLQRLPFSGKVALLELFNQIWHSGTFPEEWKIGIVIPIPKPEADRSRPEGYRPITLLSCLGKLFERIINRRLVTELESTRKLDPRQYAFRSGKGVDSHLAKLESLITLHEDEHAEIVSLDISRAYDTTYRPGILRTLMNWRITGRMMNMLSSFLCDRFFQVAVNGALSTLRRADNGVPQGSILSVTLFLVAIQPMFDVIPSDAEILIYADDVILIVKGKNHVTIRRKLRRAVKAAVDWAASVGFTIAPTKSKLLHVCNLTHRKRGRAIKIDSIPIPQIRHLKVLGIIIDSKLKLSKHLASVKQNCRKRMHILRILGYRLKRSSRTSLLRIGSALILSKVYFGIGLTSINFEALQQTLEPIYNDVVRQASGAFKTSPTISIMAESGWLNFRLALIQRLCILVVGLIEKNEDAVAYPVVQRAKTLMLETTGWTLPNVCNVLRLSNREWYAPVPIFENALRNNIKAGTNRAIVVPRFKELITSRYKIHDQIYTDGSKDRDQIGAGLTIGDRNYSFRLPGICSVFSAEAFALMNAVSMSQGHTNVIILTDSASCLDALREGRSKHPWIQSIEKNIEGRNVTFCWIPGHSGIVGNEKADELAKQGCNQPSVDIPTPAQDAVRAVKEKIWSYWEAEWNQSRCHLRAIKPTAGKYLDRKCPSEQRVLTRIRIGHTRLTHAHLMNNSNPPVCTYCGDRVTVQHIITECRGLEGSRKKCGINGSMAEILAYNAENEKAVIQFLKDCELFDKI
>I_Ele20_gag#LINE/I 407-1705  [Aedes aegypti]
MAASSSGDPGGTAARRLPTYMDPTNKFGELTFLQLTGKDGVQLPXNPYIVGKSVEMCAGGPIEDGKSEAQGTRYTLKVRDPAQVAKLLKMTHLIDGTKVEVIAHPNLNVCRCVISCFELIHMDEAEILREMGGDGVIRVQRIMRLEGGKKVNTPALILTFCKTTFPGHIKVGLLHVPTRPYFPNPMLCYNCFSYGHTRTRCPGPQRCFNCSGNSHGEEECGEAPHCRNCNDGHRPTNRQCPVYKQEIEVIKIKVRDNLSFPEARKRAELQAQGSYAQVAAQQNEFDKKLKELEATMKQKDELIAKLLEDNRQKDEKMEQMLAQIWQLKQQISSQEKPHSSREIKSAQPPSGVVTRSRNNSPALTRSRNNSPAIQETKRSRASKQHTDSLTKPASPDRQSPPPKKTATTIPTQRSTYSDDDISISEIPPNHRLR
>I_Ele20_pol#LINE/I 1659-6110  [Aedes aegypti]
MTIFRYLRSHPITAFDSSNAKHRLNTHDDDPRLTTDNEINRFESEECAVLLSTQAQQVEKTVRDALPQPVDSDLXSVADGTADNTTMRVFEHSRRIQMIVEETEDINNETTQSLSLMPTTVGIHQRSSVVRSTVVGIGGQDVPQVSPFNNHDLAGTAASVPITDPRTSLTQPGYQNTHLQGDTYSQTHRQDIVSCSQTTQSLSPVPVAVGDFGSSVVFSTAAGTVGQDVPQVSTSQQRPLMEFTAETIPIPATILNQQAPSRGASVTSSCSSDILPAVNNNDKCFALQWNMRGLRANISELKQLIGKYSPCIVALQETKVRQTSVPPDFVGKNYSLLLEPKKDHYWQHGVGLAIKEGIPFERMIIDTTLHLIAVRIQKPFQATVVSIYIPPSAQQCETALNNLFDQLDGPVIFLGDFNAHHLAWGSQSSNTLGRFIAETTLARGLVILNNGSPTRIDPATGNTSSIDISFCSESLAQKLNWRTLSDTCNSDHFPMIIGLPGWSDTATTRKKWFFDRADWSVYERITAELIRSDEVWDVDRFTAKLIEAATKCIPQSSGQAGPKSVPWWCPEVKDAIKRRRKCLRSLRRMDASDCERPAALKRFQEARATARKAIKTAKQQSWEDFVGKLSPSSTTTELWRTVNTLRGKRQHRTPILKLANRYSDDPSEIAEELAKHYSERSATSSYSPLFQKAKEKAEQQRIDPLLNTNDRYNMDITLNELLWALDKGQSGSTGHDMIGYPMLKHLPLSVKLILLEIFNGIWRSGVFPSSWKKAIIVPIPKPKCNTPEPDTFRPISLTSCMAKVLERIINRRLIAELESSGRLDERQHAFRSGRGADTYLAELEKSLPMTDEHSLIASLDLSKAYDTTWRHGILRTLKSWRIRGRMMKLIQSFLSERMFQVCVGGQLSRPHRLENGVPQGSVLSVTLFLVAMQPIFRVIPKGVEILLYADDILLVVRSRKTEGLHRKLQSAVKAVEKWTKSVGFTISATKSSTFYCSPNARRNPSQNITINRVTVPRTNRLRILGITLDRTLNFKAHCKMVKESCASRLRIMRTIGAQLPRGNRNTMLQVGSAIITSKLLYGIGLVSRGGEAAFQNLAPVYNQMIRYASGAFVTSPITSIMVEAGTLPFELLATQSVIRIAIRLLGIHGPNRNLPLVQRASTRVGELTGAALPMIAQLVKRCSREWHASKPNVVWDVKNAAKAGDPPNKVRPIVQQLLSNRFKTSTVYYTDGSKGNDTVGAGLFGVNLAEKYSLPKQCSIFSAEAYAIRMALLLSNESDIAILTDSASCLLALEAGRSKHPWIQEIESLARGKNVQFCWIPGHTGIRGNNEADRLANDARCQPIINIALPAEDAFKDIKIGVRLYWERLWLTYRDVKLREIKFDTHKWKDRENNAEQRVLTRLRIGHTRLTHSFLLSKESPPNCECCGTTLDVRHIVLHCQKYDDVRQKYEINTNSLRSALKNDDEGETKLIKFLRDTKLFEKL
>I_Ele22_gag#LINE/I 412-2115  [Aedes aegypti]
MSLANGYPLLLGDPGGPGGRGGGPSNYINGDYTGARLPHYMDNDGTAGQLQYLKMQAVSGQIPQDPFLLRLSVEKCIGGQIDGAYKEQQGLSYVLKVRSQTQFNRLLKMNKLNDGTAISITEHPQLNQTKCVVSNADCTKLDDEYLKQQLAAQGVKDIRRIKRRKPDGTSENTPTIVLTLSGTVIPPHIDFGWTRCKTRNFYPTPMLCYRCWEYGHTGKRCTHPTRVCGRCSKVHEEENQKLNEQSNIRSMEQDESLSTPTSSMSERIPCTEAAYCKLCKTSDHSVSSRKCPVYLKEVAIQHIRVDRGISYSQATREYEARMGASRSNSTYTGVVNASKDSEIEDLKAVVEQLRTDAKAKDARIAEMELSPQNRGVHDRMQAVREHGTIEDLIRQVSELTATIEKLQQDLRRKDQFILDLMARQRTPEAESCVEIICETPEQQRNALSDSSAEIPPTASFTDPIVNKKVAKWVNAIGTHKDTGTNPKKIAKDTKNKKKLNNDGNSTDGSMESIISGHSVCTMDSSSTHPSNSGKRNHEESEASNNSSTSSPNAKRHSKVRKAKATNKN
>I_Ele22_pol#LINE/I 2256-7171 via tfasty with I_Ele15_pol, 1 frameshift. [Aedes aegypti]
PQSLPSNTPKHKSSQEASSSRGPVSAEATPQPELADNPRRSSDLSVSGTHKGSTTRSPPCPDYGRDRQGPARAEAMVVPGLAEPPCHPDHAGRGTHKGTKTCSPLDDEGCKQTGLSPYAPVFVPRARLKSHTFSSKGGSQSIPPKHDQESQKTNRKSRTKTCNKPVHRRSTGHSASTTTDLFPPLGPEVCNSDLYDNLHKTRYGESAIIVPGHSCFLVPKCGPGPRPARRRPGPARAPGGRPRRGGARGRAAPGAGPAPRGGGGAAGPRPGRAAPAGPAGRRRPGAPPRRRRGPAGPRAGAGPGAPARPPRGPPRRRGPPGAPAPPAPRRPRPAPRARRRRRNLSGHPGPQNPGGKPHPAKRTTTTNSSNLLLPAVGISLPLAGGSPPPSTGRALSCSAHNTNTTRINGSISQESTVSATSNSTSYGGRAIFATQWNINGFFRNLPDLEMLVRDRQPAIIALQEIHRTTPTMMNNTLGKKYLWYTKIAANLYHSVAIGVSTDLSAELIDVNSDLPITAIRLSWPIPISVVSLYLPNGKIPDLESRLISAFNQIPEPKMILGDLNSYHRAWGSRSNNARGSIIVSIASQCDLTILNDGSGTFFRGQVESAIDVSLVSAAITNRFLWSAESEYRGSDHVPILLTLENSFAPETTRRPRWKYEKADWSEFQMTLDNELDISPSASLSDFSALINKVASATIPKTSSKPGRRALHWWNENTQKAVKARRKALRAAKRARKQFPDDNPERAIILANYRDARNTCRQTIREAKEKSWSEFLDTINEDQSSSELWRRVNSFQGKRRIKGMALKIDGTTTRNPHVIADALADYFHSISSHQRYPEKFIKRHSIANEAVHRFLVPPDQGQAFNIPFTMKEMEYALQKAKGKSAGPDDIGYPMLKRLSPRGKITFLQMINNEWTAHTLPESWKHSFVIPIPKSSGPINDVGSYRPIALTSCVAKIMERMVNRRLIEFLEENRKLDHRQHAFRSSYGTGTYLASLGQILDDAARNGDHVEIASLDLAKAYNRAWAPGILSKLVSWGISGNLLAFVKNFLDGRTFQVLLGNHKSKTVTEETGVPQGSVIAVTLFLVAMSGVFLVLPKGVFILVYADDILLIVTGKHPKSIRRKLQAAVSAVAKWSQEVGFDISAEKCARLHVCESKHIPPRKPLTVNGVPMPTRKYTKILGVTIDRHLKFHCHFNKIKEACKNRVSMIRSISGKRTRSDRQTRLRVADAVVCSRLFYGVELTCRSFEYMVQQLSSTYNNTIRALSGLLPSTPASAICVEAGVLPFRYRAAMSICCRAVSYLERTEDDGQVCFLAGQANHALTAVAGSVLPPVAGLHRVGPRSWRAREPLIDNAIKFHFRKGSNPTQVLANFRHRIQNKYRYADIRYTDGSKLAGRVGFGIYGTNLEQSHRLPNQCSVFSAEAAAILTAILEPSENHILIVTDSASSLQALKSSNNKHPFIQAIQAELDNERTSTTFMWVPGHCGIPGNERADAAASIGRQSRIFCNEIPGDDIRKWIKNTLWDAWASEWHQERSLFIRRIKNEVVPWNDLPNWKEQKVLSRLRTGHTRASHNMGDSRNFRKICETCNTQNTVQHFISDCPTLEYLRMQHDITSISRALQNDAVCERTLLNFLKEARLFNEI
>I_Ele24_gag#LINE/I 883-2619  [Aedes aegypti]
MATGLGGPPWGDYPPLSQDQGDSYHAGPTLPGFMDRDGFYGELRFLRIQGIDGRPLPEAPFMIRKSVHKSAGGKIEGAFPESGGKTYALKVRQLTFYQRLLDMKKLNDGTPIEVIEHPGFNQTRCVVSCREVVNVDVNVLLEEMQEQGVKEIRRILRRAGGKQINTPTLIVTTRGTVRPEFLDFGFIRCRTRPYYPSPMQCFSCWAFGHTRSRCNSSPICGRCAQNHAFEPEHPCIAAKYCKKCESSDHGVGDRSCPEYIKEGDIQRIRVDSNLSYAAARRKYEEAHGTRSYANMTAVPGFTSLNNQNDLASLHRKIDSLIATIEKKDQRIEQLEAALAQRSSTAATTSVPNVSSQTGDDMPTFMKLFLDRQEQMFGNTVKKMWESNLRMQKDILELQSRSELPSDEQIYLPAPLQANTASLSTLPTRMIAATKSTPTASAVLPNSTMESSEKSSPTPTNIKDKSNTDPLNNVTPNPVSPATKTIAIDDSSHDLNSDVSSNSSSSPNQNLLSHNSTPRPSPKTPVQSENIPKAPLRAVSPGSANKRTLRDISPDRVINAQTVSKQQRRSLPRSGHVKKS
>I_Ele24_pol#LINE/I 2655-7109  [Aedes aegypti]
MTDPCTTPEHNSNTANNDKPFSNFAPDSRGTFGPEVKPQPEPQDRPRRSSCETNENLIRNSASGSRSTGRPEVMPPPERPERLRCPMDEDAINAKKNPTISPGSWRPDSADVLPTPELANHLQRRREVEGGTDKGQPTYSPQDDEGSEALVIVGTHKGSNPRTPKDSVGSKSYAAHSNPRNSTPGHPEHLNSGGKSHHAIPHPIVSNPPAESSPSSSIDGSLSFAAPATNPLPIHLPANQVASFQRQSRHRYGSRPYRQTSYNRSRGSSISETYHPTPALPKPVNILLQWNINGFFNNLANLELLTSSTTPWCLALQEVNRVTTEQLSRSLRGQYRWALFRGTNLRHSVAVGVLASIPFEVLRLETDLPAVGVRLHGPFNISVVNIYIPCGAQPNLQEQLHRLLEATPDPVLLVGDMNAHHPIWGGQRTDNRGTSLLHVFEEHDLIVLNNGSNTFLKGNSASAIDLAAASRSCTNRFHWNVDSDLHGSDHYPIHIATNVAPPATTRRPRWLYEKADWDNYEQTFRNSSRGRESAHLQELTDIINKAAKSSIPRSSNQPGRKALHWWTDHTRIAVKARRKALRAVKRIPIGDPSRENALNLYRSRHSECKKIIADAKRNSWENFLDSINASQTSSALWTRVNALSGKRKTKPLTLRIENSHISDPSTVARILGEYFASLASVDSYTDSFKRRMQPTISSVPTFPVPDDPENLLINQPFSISELLFALKCCTGKSAGPDGIGYPLIKNLPPSGKLQLLELMNKYWLTDTFPPEWRESLVVPIPKSNAETHDPSKYRPIALTCCMCKVMERMVNRRLKQFLESQDLLDHRQHAFRAGHGTSTYFAQLGDVLHTAQSEGLHTEIVSLDLSKAFNRTWTPLVLRQLVEWKLSGHILRFVQNFLSERSFRVIVGDYLSDSFPEETGVPQGSVIAVTLFLIAMNSVFLTLPKGIYVFVYADDILIVVSGKTPVRVRIKAQAAVNAIFKWTTATGFELSAPKSVRCHVCPTNHRISVPISINGQRIPTKKTVKVLGVTIDRALTFQHHFDLVKQSCRTRLNLIRTISRPHRSNNRNIRFRVAHAIVDSRLTYGLELTCIARERLITTLAPLYHGYIRIISGLLPSTPADSACTEAGLLPFRFFISAVICKKTAAIIEKTIGDDRICLLTEGNSILRTAANVDFPPVARIHWNGDICWLSPKPNVDSTIGNQFRAGDNSIALRTTVLDWLRTKYPNHDHRYTDGSLSMRGVGLGVFGANISVSLSLPPLCSIFSAEAAAVYLAATTPSDRPIIVLTDSASVVSALQSNRPSHPWIQRTITDARPNTTFAWIPGHCGIAGNTAADRLAGAGFSCPRYEDNVPFDDVKRWLTKQFRSTWSMEWNQQNSPYLRKVKSSTERWKDLPLLKEQQLVSRLRTGHTRFSHNMSGNGSFRRMCSYCHIRNTVEHVICVCPLYEFSRNIHGISRSIREALGDDVAALEALLRFLKDSGLYNMI
>I_Ele25_gag#LINE/I 264-1895  [Aedes aegypti]
MAASSSGPPPTAWWDGPENDFGGNRVDGTHSGPTLPSFMDPEGFHGELHLMRMSGANGPLPNRPFVIRRSVEKFIGGKIEGAFPEGRTSSYALKVRSQKQYCKLLTMSQLIDGTAICITEHPTLNSVRCVVSCRNVIERSEDELLEELKEQGIKEVRRITRRNGQSRENTPALVLTCRGTIRPDIVDFGYIRCRTRPYYPSPMQCFNCWLFGHTKLRCQAKXATCGXCSGDHPIAENRECSHESFCKSCNAKGHKISSRDCPXWQFENAVQRIKVDQGLSYPSARRIVEQNRSGRSFASVTGPATTXIXQQTNVXSEEQATILAAKDAEIAELRAALAARSAPPAXANQEIEQLKAXVAEQAKQIEALTVQISVFLKAVMPAANLSCPSEPTATSIPSATSTVVLPVSSKINTTTSMLSTTSDGSINTPSKNHHTNDRITGTETDSGHTGQNVLSDSDTASSDRSVNVEFYSPNPMKTMVSPKTPKPTRTRTSLPSGSEITSDQVTPSVKRPISAVSRTESLFQLQKKTKKKASEGLGTIPKKR
>I_Ele25_pol#LINE/I 2018-6619  [Aedes aegypti]
MASDRRSAGELEVLPQPASPDRLRHHAQRISPLTSLDSRGANVPDALPQPESLGRPRRLEGEMDEELLFLSVRCPAKTPGSQSPVGAVVSHSGTGGQPLALGEDLEEGNQASEPISLDDVGGEGFEVIGTRRALPATPMDNVGSQALFLQTNAKSTKTSNFEALLPSSIPAGSFAMQPGHPGHPNPGGKSHSVNSFSGTLSSPNSMVPGVSVRHHMQRYPNPVETSLSPNAPSIPSSGFSETSLSDNRSQRIDSPSGLHGHFNPCDKSPSVISGLTTRPSETASLATNVAAAAHSQHINLGDRSFLRQTSQNSSGTSSISRTSFPTPTLPKPITFLLQWNMIGFYNNLANLELLVHDTAPWCLALQEVNRVSVEQLNRSLRGQYRWTMLRGSNLRHSVALGVLTSIPFEVLRLDSDLPVVGIRLNGPIRISVLNVYLPCGTLPNLRERIDRILEVIPGPTLFVGDMNAHHPIWGGHRSDARGIALQNIFEEHDLIVLNNGANTFFNGHTSSAIDVAAVSRSFVNRFQWSVDSDMYGSDHHPIRIGSCASPPALARRPRWMYEKADWNEYTQSFRYLSRNHAPTNLTDLAKVIHNAAESSIPRTSNRPGRKALHWWTDDTRKAVKSRRKALRTVKRIPIGHPNKENALNLYRRRHMECKRIIADAKRASWENFLDSINPTQTSFDLWSKINALSGKRKATPLTLQIQGSDVSDPPAVAMALGEYFAKLAAIDSYSDFFKRRIQPTLSSVADFSVPDDHDNAPINNPFTLSELIFAIKCSTGKSAGPDGIGYPLIKNLPPSGKLQLLDLINKTWLTDSFPSEWSESLIIPIPKTNSDSRGPSKFRPVALTCCMSKVMERMVNRRLKQFLESHDLLDHRQHAFRAGHGTSTYFSQLGDVLHTAYSSGLHTEIVSLDLSKAFNRTWGPLVLRQLVQWNLSGHIMRFVQNFLQQRSFRVLVGDFLSDSYREETGVPQGSVIAVTLFLVAMNGVFSYLPSGIYVFVYADDILLVVSGKTPVRVRIKTQAAVNAVYKWASAVGFELSASKSVRCHVCPSNHRNPVPIMVNGAVIPNKKTVKVLGVTVDHGLTFRHHFDSVKQSCQTRLNIIRTISRPHRTNNRAVRFRVAQAIIDSRLTYGLELTCIALDRLVSTLAPVYHGYIRIISGLLPSTPADSSCVEAGLLPFRFFIYTAVCRKAAAITEKTSGDDRIFILSEGCRILQSAANVDLPPVAKVHWYGDICWHSSKPNIDNAIANQFRAGDNSSFLRATVLDWLHNKYPSHEKRYTDGSLSNLGVGLGVSASDISLSLSLPPTCSVFSAEAAAIFIAATIPSDRPVLILTDSASVVSALQSERPTHPWIQGTLENALPNTTYAWIPGHCGIPGNVAADNLAGTGHSSPRFEETVPFDDVKRWISKTFKNVWGTEWAQSYSPHLRKIKLSTENWIDCPLLHDQRVISRLRTGHTRVSHNMDGRGPFRRMCSICGVQNSVEHFICTCPQYESARRSFGISGSIRSALGNDAATVSTLIGFLKAIXLYGQI
>I_Ele28#LINE/I 688-2436  [Aedes aegypti]
MSASSPPLNPGDPGGPGGGYQRNRKNGEYTDRLIPEFLDREGNAGQLQFLRMKAKTGAIPNNPFLLRLSVEKHVGGQIAGAFKENKGISYVLKVRSQAQFDKLLTMSRLADGTEISVEEHSNLNQVKCVVSNADTIGLEEGYIAEQLREQKVKEVRRIKRRNRNTNALEETPTLILTISGTVVPDHIDFGWSRCRTRNFYPNPMQCFRCWSFGHTGKRCTAPARVCGRCSKVHQEDQEMETANEQGTTNEPTPRRVCTEPTYCKACNSAQHALSSRECPAFRKENAIQIIRVDDGLSYPQARREFEAREAQKERDQGRNSYAGVASSSKDAEIAELRGTVKRLENEAAKREQRMADMEQALAYRPISERLETAKDHGPIEELIRQVAELTATVRQLQADLKEKDQIIAEMKEKQQVTPRNSMTTPTPIPQSSSPYTTVSSVECLPNFADPTMTAQVAEWVRNNVAAKKEKMANEKKRVVPKKQRKKSNDKQTALLQDDQSPHMSHSPLSRIGKESEFLATNMELDDSDNSLKSVGTATSSAAGSKRIHSISSAESSINSADEVRITRNKTRLPRDTAADISMQ
>I_Ele28_pol#LINE/I 2491-6957  [Aedes aegypti]
SHYPITFTSTFPPADVQNPELNERQQSSSNDSTNHTQTTSSTAEETSGSRGPPSADTTPQPELGDNPRHPNVLAAEDPEDGRERLGPAGADVTPQPEPADNPSLPLRSGRGTDKGGNAYPPEDVEGSKPAMNLRRNPPRRRNPPNRYGFSDINNPKPTATEYLSPKLKPLSVLESTNASAYDAMVAIRDEACAPPTAGPSGVFRRPSPLYPYQDLSGHLGGKTPSGKPHPLRRPHRKGTPPTAGPSGLAHHFVIPDPSQDQLGHLGPQNPSATTVRKSTTLSIQWNMNGFLQNRNDLELLVQEYQPIILALQEIHRVSETTMDSTIGRKYKWHKTAGTSLYHSVAIGVLADIPAVRLNITTDLPIVGVRLDLPIAVSALSVYLPNGKLPNLRERLQDALDQIPGPIIMLGDINGHHQSWGDKKTDARGCCVMDLACGNDLVVLNDGSPTFFRGTTETAIDVTLASSEIGHKLLWHVKEDPHSSDHSPIIVTLTNSTQPETTRRPRWLFEQADWAGFQELVEKELDQYASPSIEDITASIIKAASETIPRTSPNPGRRALHWWNDTTKAAVKHRRKKLRTFKKIKNKLPPDHPNTVQAKEEYQEARNACRQTIREEKEKSWTKFLDSINDQQSSAELWRRVNCLRGKRRVKGMCLTVDNVPTRDPQIIAEALGEYFQELSSMGKYPEAFRRKHHCSHSAISNFEIAPDCGQPFNTPFQMAELEFALRRAKGKSAGPDELAYPLLKNLPPSGKQGLLRAINSIWTSGTLPADWRHSLVVPIPKGSGPANSTSSYRPIALTSCASKVMERMANRRLVEYLESNGLLDDRQHAFRSGRGTGTFLAALGQILDDALSKGDHAELVSLDLAKAYNRAWTPGILEKLARWGITGNLLRYLKGFLTERTFQVTVGNSRSNIQSEETGVPQGSVIAVTLFLVAMSGVFEVLPGGVFLVVYADDITLVVTGAHPKAIRRKAQAAATAVGKWASTTGFEISAAKSTRIHICGINHRPPRKPIKLNGETIPLKRSLRIMGITLDRHLTLKNHLIGVKHSCKDRLNLLRSISAKRTCSDRATCVRVADAIIGSRLLYGIEMTCRNQDLLTETLAPIHNKAIRTVSGLLPSTPADAACAEIGVLPFRHKVALTIANRAIGYLEKTRGNGQACLLSEKANLALSTAANTTLPPVAGLHRLGPRSWSARAPEVDNSVKNRFKRQSQPEKVRAYFCERLAKRYTNWEIRYTDGSRSAGRVGVGVHGNRHEEQHSLPTECSVFSAEAAAIFQALTAPSDGSLLIVTDSHSSITAVENPRNKHPFIQGIQMLLDTAPYPRALMWVPGHCGIAGNERADVLAGIGRNSAPLTKKIPADDLRNWVKDVFWRTWTDEWRSNRELFLRKSKPNTIPGEDLSSRREQIVLSRLRTGHTRVSHDMAARGAGFRRQCELCNTQNTVEHFLCACPQYRDLRETHEITDIPRSLANDPVNERQVINFLKEAGLFGEI
>I_Ele33_gag#LINE/I 370-1674  [Aedes aegypti]
MEGHSRPPPCDPPDLARCPAWMIGDDELLHTIVLQMKVRPNDNEGANEVRLPTDPFVVGNAVLLALGTANARKVSASKEARGARYILRTKSKIFSEKLQKITELPDGTPVEITPHPTLNFVQGIVYDLDTVNHTEENILTNLQSQGVCKVRRIKKRDGETYRNTPLLVLSFQGSVVPQHVYFGLLRIAVRTYYPSPLLCFRCANYGHTKKTCDNAKFPQICLNCSESHTDVVECPNPPYCKNCQGSHKPISRVCPIYREEDAIIHTKVDRNLSYAEARADWRAANKSRSYANTVQDRLRQDDSQKDKIIKMLQEEVESLRNVILELKTQIANLSNNNQPNVSTSTQAQVRKDNSSTGKAPTVALTRLCAMEQYIKAHSVEKPQRSSSPNSNQSIDLNESMEFETTTHKKRKGNKNKSEPDSPERKKGVASSTKRK
>I_Ele33_pol#LINE/I 1677-6182  [Aedes aegypti]
MTQEPSFRKQNFAIEPDTIFGLSEHSMINNSTNNTNLHSTTASTFNNVIYATNTDTQTEQFSKTTIMEHKASSRFIAPSRSNSDSPSARLPTSALTRDVPDESDEPLAAADVDCLLTQASTNTVFFTDENFRCLQPIPGLSHDECNSQAPSPNSCYRTTAVRIASDSPSARLSTSALTRDVPDISDEPLAAADVACLYPQASKIFHSHHEIVPPRMRFFPDPTQLDALASLPREALVNAELYDHFRQVFVLPSTSSCNNRSGVAISPSNDSRNTANAENPTSQRDQETVQSTHDNFLGIVVPHASQKQLMLQWNIRGLWANHAELSNYVIQKKPIVVNLQEMKTSNTEIALKGKYDWKLADHNIRNGKGIVGLGVLKEVPHCFYDLHSTIPICAVRLHSPYNVTIVAFYFPNNANVKDIIDGLNLVLETTDPPYVIGGDANAAHEAWGSSKTSVRGRSLLSWIVDNDFIVLNNGAPTFLSDTHCSFSSIDITFASKCLAPRYLWEVLEDTMGSDHFPIITYLDATTAKEGCRKRWLYKDANWKHFEQCIDQLLQQNCDLDIVQLGNLIREAAEMSIPKSSGKLNGKSEIWWTKEVDTAVKLRRKALRAMKRLNADDPLKEVLKKKFQIARANARKVILRAKQASWEQFCETFTPSTSSSQIWTNFNRLCGKKKAVAKTMIINKTHVTDPNEIVEHFAEVFELNSKANYNISNEHAEAGTNEQSFCTVEPSVLDNNFTMQELLRAIDSAKGYSAGIDEVGYPMIRHLPLHGKMRMLMAYNTLWNEGRFPEKWKEGIVIPIPKPGQPQQHAESYRPITLLSCIGKIYERLINHRLMVHLESNDLLNQNQHAFRTGKGTTTYFADLNEIMTDALKRKLHCEFALLDLRKAYDTTWRPHIIQRVRELNLGINMTKSIESFLKDRKFRVSFGGALSSSKTQEDGVPQGSVLSVTLFIIAMDTVFNVIPSGVTALIYADDILLVTVGKKVSSTRKRLSLAVKAVCEWAKWTHFEISPNKSSLLHVCREKHRNWKKNRKEIKINGESIPDVKTARILGVWIDSRVTFKKHFKNTLNAIQSRINFLKAIASRANREVIWKIANATCISKLLYGIELFGLRCIEPYQSSFNQLIRLASSAFRTSPSLALAIESGELPFKERVALAYIRSYCKIEEKSHQYRTAFRENIEQLSTTFFGEAFPQISKLHRFGQRPWYYARPKIDWTIKRNFKVGEGAHKARAFVNGLLNSEYKQYTRIYTDGSKDEVGVGCGVIGVDFIIEGQLPSSSSVFSAEAAALAIAVYHADNTPTVILTDSASCLSALEKGNILHPYIQAIETFSENKHVVFLWIPGHCDISGNVKADQAAKRGRTGLALEFEVPAKDLILWAKHKMKDIVQSRWIGNTTDQLALVKRSIGKWNDKMKKSDQRVLTRCRIGHTRLTKCHLFSKNDPDICDLCNSSLDVKHILLECRKFDDIRRRLGISSNISIALSNDQKEENKIIKYLKNTGLYNQL
>I_Ele34_gag#LINE/I 384-1745  [Aedes aegypti]
MSGASPGPPGGTERTICRSNVPEWMLGPDDLGQTMVLVLRRKLKENDXXDQTQXKATLPDSIIVGASIELKIGVKEARSTNATREGRGTRYILRTNSRSILEKLTKITHLTDGTEIEIAPHPTLNTVQGVVYDLDTVNKDENLILDYLKPQGVQSVRRIKKRVNGTLKNTPLLVLSFNGTVVPDYVYFGLLRIXVRPYYPSPMICFNCGSYGHSRKFCQQPSICLRCSVQHDTPEGEQCTNPPSCLHCKAEHQATSRDCPKYQQEEKIVRLKVDRNVSITEARRIFAEENKQETFXGVVQEQIQQQLAAKDVLIVTLQKQVAALTKEVAVLRNVLKSSTQSQSTSQRDQQIATTRQRSSSKNPSNTTTPQNQPAQRDRLSRKDHCFITPQTDQLENLRNNREQYNVQTRSRSSKRHMEISPTETVNNRGKRISAQSNTSSASTNAETNNGPGSS
>I_Ele34_pol#LINE/I 1729-5898  [Aedes aegypti]
MGQDHPKAIHQTTNKNDPATKHDKTLNKRLPPPTFGNLDNCKNSDNDSDQQKRTSAXSTTTXIGKVTTTTXVPKHSALTAAEYDRIHHLXSIPSTSKTMSVLQHDSPRARPPTSTLTRDVPDYSDEPLAAVGVGSPLXRASIFSSXSSQEQTTASLFPSNSGRSCIKSSVEVFQCSDSPSARPPTSTLTRNVPDYSDELLAAVDVGRPYSRASILTPLFYREQSNPAFFHTNAEKHTTNINFXQNTPLSSSAPTDRPSSITSPLRVTATPPHPDSPSARLPTSTLTRDVPELSDEPLAAVGVGWPYTRASITTLFQYKNPSTSAFFLANAGSSTEVIPGADAINQPASTHHQRNDKAVTSTSHSTTVWKDTGEVISESNTPDRRSVQPPTTNTNHNTTSRPISPSPSQASTDSEPFPSGGNAAPSFAVQWNISGLRSHLAELQLLIGKHQPIIIGLQETNADSNRLDQNCLGKNYKLFLSHCSPHGRQGAGMAIKIGTPFQLINLKTKIQAVAVKLYTPIPITVASIYLPPKDKNAVEALDELLKELPKPTLILGDVNAHHTAWGSRTSNSASECKKRGETILEMIVQHDMVILNNGSHTRIDPSTGASQALDVSFCSATHAAKFKWNTLLEYSGSDHLPILIDTHSXRXETQHRPKWIFGKANWELYEQIITNSICSGAILTVDEFTNKIISAAESSIPKTTGNIGRKYVPWWNSEVEATIKARRKCLRALRRLEDNDPRKIAALKQFQEARSICRKTINDAKLKSWESFVESINPDTPTSQVWNNINRLQGKRKNSTIALNLPTGHTNDGEKVANALADEYQKKSSDEHYSEQFRRKHKADNCETFKNQRSNLHKXYNTDFTIXELIWALNRRGGSSTGADNVSYTFLQRLPFSAKVALLNLYNRIWDSGIFPSQWKVGTVIPIPKHDADRSKPEGXRPITLLSCLGKLFERMVNRRLITELETSGKLDXRQHAFRSGKGVDSHLATLESHIDLKPDEHVEIVSLDVSKAYDTTYRPAILRTLSRWRISGRMMNIVSSFLCDRYFRVAANGSLSSLRKAHNGVPQGSILSVTLFLVAMQPIFDVIPSGTEILLYADDVLLIVKGKNHGDIRRIMKKSVKAAVGWATDVGFAIAPTKSKLMHVCSSRHRKCGRAIKIDNIPIPRVRSLKVLGVVIDSKLNFIKHFSSIKQSCQRRTQILRILGYRLKRSSRATLLKIGSALVHSKLYFGIGLTSGNIADMERILGPTYNDVIRQATGVFATSPIISIMAEAGCLPFHFAIIQRLTQLAVRLLEKTEDVAGLPLIQRVRTLLMDLTGWCLPDICKTLRTADRAWHSPSPTIDLVLNVISRPVKTRSLHCLSSMILSRLATVDMXNCIRMAPKITDISAPV
>I_Ele35_gag#LINE/I 336-1775  [Aedes aegypti]
MMPVSATSPRFRDPGGPGGGGPSNMFRGDYAGQLVPFHMDNDGCSGAIQVLQMKATEGKLPCDPFLLRFSIEKWIGKAIDGAFKENQGISYALKVRNTAHFQKLLKMDQLADGTKIQIMEHPTLNKRECVVSNYDCVDLSDEYLLEQLSDQGVRGIRRIKKKNPDGKWVNSPTIILTISGTVIPDHIDFGWSRCRTRNYYPAPMLCYKCWEYGHTKKRCSQPHETCGVCSQVHDAGSNMDPASRINESTVETSRSPPCTNSAFCKLCKSNDHPVSSRKCPVYLKEVQIQHIRIDKGYTYPQARREFESMQENHNSNRDSFAGIAAHSKDKEISDLSDTVRRLIEDSRKKDNRIAELEKSLQGRSTTYRMDQVKQHGTIEDLIVKVDQLSRNVTELQDIIKKKDLEIEYLRKIYVNPTESQLNSTLNVTIPETQDMTTDSTSQIDAYDSIPDNKLTSQCLDWINQSGKNPKKKKKSSKNGP
>I_Ele35_pol#LINE/I 2035-6339  [Aedes aegypti]
YALXTIFNPKKRISEKSSTRVTDHVQNEAVTNQDPTDDNNIHTAEALGSRGPVSADATPLPVLADNLRHPAASCFRGTHKGSQTRSPPFPSTSGREKDKEVHTNSPMDSVGVMFGHSTSSSPSNSEQTQRRYPTRTRREPLRFQSETSVFQPLGPEATNADLYDRLHARRYGNSGTNQPGTSQHYPSLRTNQYSPAPVLSKSPIAVPPPNEVLSRSNAKKTPYASRCCKQNSCFALQWNMNGFFNNLPDLQLLVRERKPAILALQEIHKASISWMETSLSGGYKWITMCCENFYHSVALGISAEIPFSQIDLDTELPIVAARISWPFPVSVVSFYLPNGTFSNLENQIRQILAQIPEPVILLGDCNGHHRAWGSKANNTRGIMMVEVANELNLTFLNDGSTTFISGQRETTVDVTLTSASISHVLQWAADIDPLGSDHVPITLFLNDSPPETSRRPRWLYDQADWSSFQNLIEVSLDHTTPDSIEEFVELIHDSARSTIPKTSPTPGRRALPWWSNETKKAVKLRRKALRAAKRLPAGHPNKDEATKKYREARNECRQTIRKAKECSWISFLDSINDNQSTADLWKRLNAILGKRRAKGIALKIDSCTTRNPAIIADSLADYFADLCSLQRYTTVFLNRIPTPAEAIKNFVVPPDRNQQFNEPFSINELALVLQQGKGKSSGPDDIGYPMLKRLPVRCKSILLGLINREWTNGTFPNIWKHSLVVPIPKNSGIASETKHYRPIALTSCLCKIMERLVNRRLIQYLQENNRLDHRQHAFRPGFGTGTYFAALGQILDEAMARGDHIEIASLDLSKAYNRAWTPNVLQKLAQWGVTGNMLTFIKNFLSDRSFQVMIGNHRSKTVPEETGVPQGSVIAVTLFLVAMNGVFQILPKGIYILVYADDIILISIGKTPKNTRRRLQTAVNAVTKWTDLSGFEISAEKSARLHICSSSHIPPRNPITIRGTPVPTKKTMKILGVLFDRSFSFRQHFTNLREDCKSRINFLKTISNKRTKSDRISRIRVADAVINSRIFYGIEITCRSFELLVQNMSPTYNEAIRAISGLLPSTPAIAACIEIGTLPLVHRTVIAVGSRAISYLERTRGDGSVVFTVREANRILESVAGVKIPPVAGVHWNGSSRWQSRLPKIDFKIKGNFRAGCNPTILRSAFQERISTKYTQHTIRYTDGSKALGRVGIGIYGDGISESHQLPDKCSVFSAEAAAILQAVSHPYDGSLLVVTDSASALLALASPVSRHPWIQATQIAVAESNNITFTWVPGHCNITGNESADHLANFGRTCRLRTRKTPGEDLKKWLKSTVKIAWASEWSQSRDLFIRKVKGVTTPWEDVPNRKDQVVLSRLRTGHTRVSHSMGGEPEFRKKCLLCNIHNSVEHFICNCPAFDHLRQEYGIGSIRSALQNDRASETALICYLKEAGLYQDI
>I_Ele36_gag#LINE/I 544-1794  [Aedes aegypti]
MCELKTSYRIRLLLAKELKLVIGLKEARAVEAIREGRGARCLLRTNSLSTYQKLQKIVRLPDGTDVEVFPHATLNTIQGIAYHPDTVDVDEESALDFLSSQGVKHVRRIKKRFGKDFRNTPLTILTFHGTVLPEYVYFGLMRVQIRKYYPNPMVCFNCGNFMHTKKNCTQDKICLNCSQAHDMVEGVACPNAPFCKNCRGSHSCVSKECPVYAEEEKIIKLRIDQGITFGEARKQIKEQKTQTTYASCVQHRMSADELGKDEIIQALRAELQTARSEFNQLKELYKKSIHQLQTHQQHCVLLQEVQQKQKQTASELKKQSSSSQPAQITSESATQATHIPRKDQPSRSPPKDKRNKNAQSNKLNDQHTNSTWSTRIRSRSNKRSSQASPSEADPSLRGAKTFVAQACDNDSGPHMQS
>I_Ele36_pol#LINE/I 1800-6725  [Aedes aegypti]
MDQDSLTNNTVYNDENSATNMAVNMETQQDPPPNDIFDRNSTMNNYYDNYNNVLNEELESSAITDPISVNRSRRPRHTMLTPLRNVSRDNRPDYLREVVNVACQNMQASTSSNYQANPCCRLPSTFPDASRSIPEIDLHNRSKSQNPTEYFDVRIXNPVLFHCDAPLHDNVDDEEMQHPGISYQMPQVNERSCRPRYTMLTPLRNVSRDNRPDYLREVVNVACLNMQASTSRNYQSNPCCRLPSTFPDASSSIPEIDLHNRRINPALSHDDASSHDNVDNEEMQPRSINFNNSENFSCIGPFSSDDTTNSDQRCIINNRSYGPRHTMLTPLRNVSRDISPDYLREVVNVAGLNMQASTSFNHRSNPCCRVSSNFPDTPSSTDIGLHLQNTVEMDFQQAQNNDFVPVLDTVSPSEPPTNNRRDLSSSSHANSSSTNNQTRCPRIAVQWNINGLYNNLTDLQILTQCNPPLILALQELHRHTPSALNNLLRGEYNWLSKCGSTRYQNVALAIHRSVAYDTINLNTSLTAVAATVYVPFRLTVVSIYLQHSGIENLESSLIHLIDQLEGPLLIMGDMNSHHYAWGSKKTDRRGEAILRVAEDKNLIVMNDGTPTFIRGDQQSAIDVTMASTSILEKLRWKVHCDSMGSDHFPIEIYSSDAQIHTKRRPRWKFDEANWDGFEEAVLSCMEPAKQYSIEDLTDIILLAAKSNIPRTGQFPGKRSVHWWNAETKAAVKVRRKALRAFKRLPVDHPNKQQAMENLRIQRSNCRRIVKEAKIKSWEEFLNGINSTHTTTEIWRRVNAISGKRRTNGLCIRNDGEVTRDPVKVANTLAKYFEELSSRAAYSDSFASKNPATALSNVTIPEDPEESEYNRLFCIEELYYALEASNGKSCGLDEVGYPMIKRLPYRTKIALLDAINKVWTTGTIPEPWSRSLVVPIPKNSAASTDAKNYRPISLTSCVCKIMERMVNRRLTTYLTENQKLDNRQXAFQRGRGTGTYHAVLGQVLDDALKANLHVDFAALDLSKAYNRVWTPGVLQQLIKWGITGNMAKFIKGFLSNRTFQVIVGNDKSEVMKEETGVPQGSVLAVSLFLVAMNSVFDRLPKGIFVFVYADDVLLVAVGAHPRALRRKLLAGVRSVAKWADNVGFRMAPEKCAITHCCNHPHHPWRLPLTVGNMDIPYKKVLRVLGVTIDRKLTFSVHFASIKKESENRMRLIRAISSRHQTSNRRTILQISNALITSRLLYGIEITCRASEVLINTLAPTYNRFVRFASGLLPSSPTLASXNEAGVLPFEFIVAKSVADRAINFIEKTYGGNEEVFLLTEAENLLQKYANETLPPIAGLHRVGDRRWDTTAPRIDWEMKQHVRAKDPPWKVSSYFNALLQRKYKNHKHIYTDGSRANGEVGIGVYSRSSKVAARLPNCCSIFSAEAAAILLALRNVREEPVVIFTDSASVLSALDSGKSSHPWVQEIEERTTAATTLCWVPGHCGVHGNEEADHLASTGRTMNQRIMPSPGVDIKRKLKEHLILAWTRKWHTERNLFLRKIRDSTEKWNDRLNQKEQRIISRLRVGHTRLTHPHYFSNEQQPRCEICSVRLTVEHILAQCPQYQPGRDALELKYSIRDILSNDREEEEKLLLFLKQIGLYDKI
>I_Ele37_gag#LINE/I 305-1963  [Aedes aegypti]
MALANGFPPLLGDPGGPGGGGGGTGPSNKINGEYTGRLLPSFMDHAGTSGELRFLKMEAVSGSLPQDPFLLRLSVEKFINGPIDGAYKENKGIAYVLKVRSKAQADSLRRMTKLADGTSIRINEHDTLNQRKCVVSNYDTIGLTEEYLQSQLSAQGVKEVRRIKRKNAIGELENTPTVILTICGTVIPPHIDFGWNRCKTRNFYPAPMLCFRCWEYGHTGKRCREPHRICGKCSKVHPEDRIVTTAPDLTEEPTVSAGSSNPPSAIERNRTPCLEAAFCKICQSDDHSVSSRKCPAYVRECEIQHIRVDMGISYPQARREYESRQSASSCSTAYTGVVNASKDKEIADLTAKVQKLQSDTKMKERRIEEMERQLQNRGVGDRLETVQQNGTIEDLIRKVTALTATVEKLEEALVKKDETIKRQKKEIALFRAMETKSECSNVTVPETQSSTETESIIPGTVEQETTEQVAEWVKCNSRKQPEKNCQKSSKNKDNSPAVNSMTDLHGTRNLNTPHALNLPKRNREEESSGDSLSIKAPAIKRSIRARKMKGNQK
>I_Ele37_pol#LINE/I 2217-6212  [Aedes aegypti]
MPRRYPLRTRRKPLRLRYPIRETKIPKYFPPLGEEVSNAQRYDVLHKTRYGPSASIIPGTSRLTHKKTNAPSLLPAADPGWNSFPDETVCYTQITEHAPLQVSDCCSRDALEGHSSRISSGSSSHSRTVLAIQWNINGFFNNLADLELLVNNMKPVVLALQEIHKASVSSMNNKLRKGYNWIAKSGNNIYHSVALGISSELKFTEIPLDTDLPIVAARLDWPFSASVVSFYLPNGNIPNLENQLRNVIQSIPTPIIMLGDCNGHHQAWGSHDSNARGSLVAELASSCELSILNDGSPTFIRGLAETAIDISLISTGILNRIHWTAGTDPLGSDHVPITLYLDTATPETSRRPRWLYEKANWAEFQSSFEAAIENSKPNSINELTDLIIEVATATIPKTSSTPGRRALPWWSDEVKAVVKARRKALRAFKRLPSSHPEKEAASQRYRETRNQCRQTIRESKEKSWSEFLNGINEHQSTTELWSRVNRIHGKRRVKGMALKTNGIMTRDPALIVDALADHFYELSSIKRYPETFLKKHPSPDKAIKNFVVPPGMGQCFNLPFTMTELDFALQKASGKSAGPDEIGYPMLKHLPTEGRIVLLNAINKEWIDGTLPDGWRHGFVVPLPKTCGPANDVKSYRPIVLTSCTAKLMERMVNRRLVEYLETNRKLDRRQHAFRPGQGTGTYLATLGQVLNDALSRNEHIEIASLDLSKAYNRAWTPGILRQLAQWGITGNMLTFIKNFLNERTFQVMVGNSKSKLVAEETGVPQGSVLAVTLFLVAINGVFKVLPKGIYIFVYADDILLVVCGKYPKATRRKLQSATNAIGKWADLSGFDIASEKCARLHICSSNHTPPRKPITIHGKPIPTKKTLKILGVTLDRNFCFKEHFETTKKKCKNRLNLLKVITNRCTKNDRMTRIRVADAIICSRLTYGIEITCRASDRLIQQLAPVYNNAIRTIAGLLPSTPADAAVVESGVLPFRYKITIAICNRAVSFLEHTKDDGSVAFIASEANRILDSVAGVTLPPVVGLHRNGPRSWQANLPKIDKRLKNHFRKGNNPIEARALFFEQLRSRYSNTEIRYSDGSKAVGKLGIGVCGTGLREHRSLADQCSVFSAEAAALFVAASKPSDRPVLIATDSASTLLALESPRTKHPWIQATQVLIDDETKNVTFTWVPSHIGIPGNEDADKLANMGRSSRRLTRKVPGSDAKLWVKNTVQDAWEREWRTNRLLFIRKVKGTTRIWDDRPDRREQVVLSRLRTGHTRLSHDYTGGLPFRRTCETCAVHNTVEHIICECPTLEQLRTRYQLGSIRNALNNDKAGETSLICFLKDAGLFSQI
>I_Ele39_gag#LINE/I 382-1722  [Aedes aegypti]
MASSATAPRGGIFEQHSRSNVPQWMLGSDDIGQVMVFVLRRKLDKSNVSENERNQNAALPNPFVVGASIRQVIGVKEASSIETTREGRGSRYLLRTSSRSIAEKLTKITKLSDGSDIEIIAHPTLNTVQGVVFEPDTINVDEEKIQKELESQGVHTVRRIKKRINGKLINTPLLVLSISGTILPEYVYFGLLRIPLRQYYPSPMMCFHCGHYGHSRKFCQQTGICLRCSTSHDILDGEQCENDPKCLHCKGGHSVSSRDCPKFKEEEKIIRLKIDRRISHAEAKRICSLESRTEGFKNVVQDQIQQELAMKDQLIASLQQQVATLVKEIESLKKILKPKPKDLPSATQDEQHATLQSAMDSPVVTPASSQSSLLKPNRLSRKDKESTVPPGKPPGSRCSSRPSYDVQTRSRSGKRHYDISPTDTDKHKGKRISVPASTSNKPIDIDE
>I_Ele39_pol#LINE/I 1725-6497  [Aedes aegypti]
MPRKTQRNTLTTDFSDPATIMDKSITFPNYSHELRLHPTPATGKQSLKRFEDXESVVLSSLPEEEARLQSKVIQDVFLQPVEHQAFSPAVMYNKPKDLPHSAKINSTAYDQFRHISVIPSTSKTQIFGYYESPSARPPTSTLTGDVPVQPDEPPAAVDVDHQTLPASITTIVSYDQSDHIQSFNNTAQPKPNGMNHFEIDRKTFPDCSHELRLHPMPATHKLSLKRFEDDESVAFSSLHEEEARLQSKVIQDVSIQPVEHQALSSTMRINTLKVLPHSAKINSTAYDHFRNISVKPSTSKTQIFGCYESPSARPPTSTLTGDVPVHPDEPPAAVDVDHQTLPASINSIVPYDLSTHIQSFNNTAQPRVNGLEYPNNSSLDDESLSETRSACSHEPEKRMLFFQWNIRGLWCNHTELCHLLLDNPPIVVSLQEMMTKNVNNALRKKYTWNSVNRHYSQGAGAAGLGILSEVPHNFIKVNCPIPVCVARLLNPYNITVVSIYVPPNSPDSHMLETLNSIKGNTDPPYIIGGDFNAAHEAWGSIKSSSRGLKLLSWIVDNNMVSLNNGEPTFISSSHGSTSSIDLTIVSNSIASRLSWTIAKDTHGSDHFPIRVYSQERHPTEQHRRRWLYKNANWPTFENSLLDVLQPNKDISIDELNNAIIKSAEASIPRTSGKSIGKTEIWWTDEVQKVVKARRKALRKMKRTAPSDPSYESIRKSFQASRAAARKSIVQAKQESWTNFCSSFNPRTPSDVLWNNFNRLNGKRKKGVKGLVIDGAFVQDPPIIAERFANYFQQASTTPAISASASNGETMLISSTESNSELDKEFSLDELLRAIDSAKGYSTGKDNIGYPMIRHLPISSKYAMLKCFNRIWAEGKFPQQWKEGIVVPVPKPGTTQNTIENYRPITLLSCIGKIYERMINHRLITFLEKHNILHPNQHAFRSGRGTSSYFSDLKEILENAKQSKNHLEFALLDIRKAYDQTWRPHILQQVNRLSVGNCMKSCISNFLKDRLFRVCYGSSLSTQKPQDNGVPQGSVLAVTLFLLAMNSVFEAVPKNVRILVYADDIVLVASSKQISTVRHHLANAVSAVNTWAKQVNFSLSATKSCLLHVCQRXSHRGSRSLPAIVVDGEAIPEVNSARFLGVWINRRGQFSTHAAKTKQALRNKVNFIRALSPKASRSTLWKISNAVCISKLTYGVELFGDGITALLRPIYNELLRISSGALRTSPTLSLATEAGELPFDLRLAELLVRKYCKIIEKTNKNYPYFHETVDRILNQLIEHNTPCITKLRRVGRRPWNFPRIRVDWSIKREFKKGQNPGIARMLTSNRMDAQYAKHTKIFTDGSKTSNEVGVGVIGPNIYVERSLLPQCSIFTAEAAGLLFAARAAPRTPTVILSDSASCLSAIEKGKSTHPFIQEFEYVAADKNLVACWIPGHSGITGNEQADNAAERGRSSRLLYRSIPAADAIQWIKHQLHAKFQEEWANNSVTFLQRCKPTVEKWIDRENRLEQKTLTRLRIGHTKMTKKHLFDNTFSPICDVCNTNLTVEHILISCRKFDLVRDELGLSNNLQIILSNTKENESKLLKFIKKCNLSDKI
>I_Ele42_gag#LINE/I 306-1649  [Aedes aegypti]
MAGSSSAPPGGTAGHQSRSNLPQWMIGPDDIGQTVVLVLRRDTKSTDDFDHGLSQNSPLPHPFVVGSSIQQIIGVEAARSINTTREGRGSRYLLRTKSRIISDKLMKITELCDGTRVEIVPHPTLNTVQGMVYEPDSLDVDEKLIEQELKSQGVLAVRRIKKRVNGKLQNTPLLVLSISGTILPEFVYFGLLRIPIRKYYASPMMCFNCGFYGHSRRFCNQTAICLRCSTTHTVVEGEQCNHDPKCLHCKGGHPTYSRDCPKYKEEEKIVRLKTDLGISNAEARRMYNESNRTDSFSKVVQDEVQQELAKKDQLIASLQKQVAALAKEIGLLKKSQRSFAHSLSPVPQNQKSSATQSKQIKPTTSTTHQQPTQNTSNRISRRDKIASSTPCKRTTERSNEKMDYDILTRSRSGKRHFEISPTDSGKSSGKRSLAPPGSKSPTSIEVDE
>I_Ele42_pol#LINE/I 1649-5911  [Aedes aegypti]
MMIQQPRINHIKTIDMTDPAMTKDPRMEDQTTTHANFDDSSIQSEHDLEQRLHTTPATYQLHRKRFEGDESVVLPSLPEEEAVLESAVVQDVILPPVDHQTSSPAVEVIHLPPLPNSAKSNCNIYDALRNITVHPSTSKDHATRNFDSPSARLPTSTLTREVPDWSDEPLAAVDVDHPYDPASINLTLPPSVQSNPIGYSNIPAMSNDRTHCEQSTLSNDDSSYQSSQEQRRNLLFLQWNIRGFWSNHTELYHLVHRNPPIAIGLQEMMAKDADKALQRQYTWCFSDRHYSQGVGAAGLGIRTEVPHKFIGISCPIPVCTARLFDPYNITVVSIYVPPNSPDKHIIDTLNSIISNAEPPFIIGGDFNAAHEAWGSSKASKRGRQLLCWFVENDFIVLNNGEPTFLSSRHGSTSCIDITAVSKSFASRLHWSIANDTHGSDHFPIKVYSQEALLEKRNRKRWLYKNANWTLFEHNILESMEIEADLSIDKLGDIILKSAKASIPRTSGKPSKRAEIWWSEEVKAAIKTRRKALRKLKRTATNDPEHERIRKAFQSARSIARKTVSTAKRESWDVFCNSFNPQTPSETLWNNFNKLNGKRKNGTKGLVIRGTYEQDPSVITEHFADFFQQASATSVSHESNLPQSVTNENSPLNEDFHISELLRAIDSTKGYSTGSDNIGYPMIRHLPIAGKYAMLRSFNRVWAEGRFPQSWREGIVIPIPKPNMPRNTVENYRPITLLSCIGKIYERMVNHRLVTFLEEQNILHPQQHAFRAGRGTSTYFAELKEIIENAKQSKTHLEFALLDIQKAYDQAWRPHILHQLNRLHVGNRIKSCIKHYLQDRNFRVSYGGSLSSQKSLDNGVPQGSVLAVTLFLLAINPVFEVIPKNIQVLVYADDIVLVASSKQLSKVRQHLSNAVKAVNEWAKSVKFSLSPSKSCILHVCQRTGHRGYRSLPDICLNGEVIPEVNSARFLGVWMNRRGKFSIHAAKTKIALQNRINFIKAISPKASRESLWKISNAVCISKLLYGVELFGNEITTLLQPVFNQLLRISSGALRSSPTHSLAAEAGELPLQLRVIELFVRKYCKITEKSRRTYTHYRRAVDLTLCEVVGVELPNIAKLQRVGRRPWNSPRIKTDLSIKHAFKKGQNTRIARVITEDHLISKYANYMKIFTDGSKSGSEVGVGVIGPTFFVERSLXSQCSVYTAEAAALLTAAHHAPRTETVILSDSASCITAIEKGESTHPFLQEFEKISAHKNITVCWIPAHSGIQGNELADKAAERGRSSRLLYRSIPASDVIFWVKQQLRRNFQEQWSNNKTTFLQFCKPTVSKWIDRENRLEQKMLTRLRIGHTIITKKHLYDKMSPRKCDTCNIDLTVEHILLNCRKFELIREELAMSNNIEIVLGNSKENESTLIKFIKKCKLVDKI
>I_Ele43_gag#LINE/I 560-1849  [Aedes aegypti]
MAAASSGDPGGSAKRRLPEYMDPTNQFGELTFLQLSGKNGAPLPINPYITGKSVEACAGGPIESAKTEAQGTKYTLRVRDPAQVAKLLKLTKLIDGTEVEVVPHPNLNVSRCVISCXDLIQMEEKDILTEMISQKVIRVQRITRNEGGKRVNTPALILTFCRTTYPEYMKVGLLRVATRPYFPNPMLCYGCFSYGHTRVRCPGPQRCVNCSQNFHGEECGEAPSCRNCKGDHRPTNRQCPVYKKEVQVIKIKVSENLSFPEARKRVEQQAGSFAQVAAQQSVFERKLKELEAAMLQKDKEIARLQEDNKKKEERIEQMMAFIKQVKQQSNPERVHHVSETVVAEKPRHSREQRVAQSTAGPMTRSRNNSPAVQETKRGRPPKFVYPKPAXSPDTSPPPKKTAPTTHDLTQMEYSGEESEVSETPPNQRLR
>I_Ele43_pol#LINE/I 1785-6665  [Aedes aegypti]
LRWSIPAKSLRYRRHPLTSVFDNPTLEQRSEYNDDPRTNTDNETFRFGSRESVVPLPTQVRQAEGVIRDVLPQPVDDEFTSVADGPNDYTTTLQTQSAPTSSNSIESNNRHTDDTTQSLSPVPAIAGVSGSSRVVVSAMAGTVGQDVPQVSLLNSQPQTGTAAPAIFSDTHHTTPTAANPNQQRPTSTNRLAINNRPEETTQSLSPVPAVAGVSGISRVVVSAMAGTVGQDVPQVSFRLSLPQSGTAAPAILSDTHQTPPTTANTNRHQPASTYRLVFNNQPTDDTTQSLSPVPAVAGVSGSNRVVVSAMAGTVGQDVPQVSLSKFPSQTVAAAPDYLSGYAASPPSPGEGPSRVHRRNITQSASPVPAVVGIGRTSVMVSTAAGTVGQSVPQASDSLVPSSSEATALPLSPTTDPPIRRSSTSSSTTRSATDSRSGGCFALQWNIRGLRANISELKLLISDLEPCVVALQETKVNQTVVPPDFVGRNYTLLLQSTNANYWQHGVGLAIREGIPFERIQVDTSLHLVAARLHAPIQATVVSIYVPPSSAQCQTALDELFDQLEGPILLLGDFNAHHIAWGSHQSSALGRFIAETTLTKQMVILNDGSATRIDPASGNTSAIDVTICTESLARRFTWRTLTDTHGSDHFPIAVSIPGWSNQQTTRRKWLYDRADWELYERITAETIRPEVEWNVGSFTEKLIEAASKSIPRTSGRIGPKAVPWWCPEAKAAIRRRRKCLRSLRRLQQVNPDQPEALAEFQAAKAEARKAIKEAKEKSWESFVGKISPHSTTTELWRTVNTLRGNRQKRSVILKRPNGFTDNPEEVAEELATYYGERSATSSYPPSFQMAKMAAERESIDVSSNTGDAYNVDITLAELLWALDKGRGASTGTDGIGYPLLQRLPVSVKFVLLELLNKIWRNGEFPASWRNALVVPIPKPNCQDSGPAAFRPISLTSCMAKTLERIINRRLITELESNGRLDKRQHAFRVGRGTDTYFAELERSIPNADEHCLIASLDLSKAYDTTWRHGILRTLKSWRIRGRMMNLLQSFLSERTFQVSLGGYTSSEHKLENGVPQGSVLSVTLFLVAMQPIFRVLPDGVDILLYADDILLVVKRAKSEGLHTKLQAAVKAVCKWAKSVGFAMSAAKSHVFYCSPNARREPARNVIVDQVSVPKTNRLRVLGVTLDRTLTFKPHCKMVKKACESRLRILQMIGAKLPRGNRTSLLQVGSALVTAKLTYGIGLVSRGGPATLQTLAPAYNKMVRYASGAFVTSPIISVMAEAGTLPFELLAVQCVARTAIRILAKNSRNNTLPLIRRASDRLEELTGTALPAVGQLVRQGDRAWNERKPSIVWDVKRSIRAGDPPEKVRPVVQQLLSTRFRNSTVVYTDGSKCEDTVGAAFYNNGISGTFSLPKECSVFSAEAYAIKKAVSIPNIRNEVVILTDSASCLQALEAGSSKHPWIQEIEHIVRNKNVRFCWIPGHAGITGNNEADRLANAARQQPAIDTPIPGEDALRATKEAIRCRWDRQWFAIRDNKLREIKHDTKRWTERGNAADQRVLTRLRIGHTRLTHTFLLKKESPPTCECCGTSLDVRHLILHCRKYEQERRKYDIDTLSLKEALDDTKERTKSC
>Ingi2_pol#LINE/I 157-5679 [Trypanosoma brucei]
MKIMKISLVTPATSSWCQGLVLRPGGSQVPALYPVRQDWGWKQAFGDQRRSKKQHRHSGVKKYIRLLLCTCERASIGIHRLLLLLSGDVEQNPGPIIRGAQWNAGGLSQAKRIALEKKLHEDMVVFCLLQETHLAAEECCALKISGYQHMGMARSPHGGGVSILVKDGVGVIQGPKEEGLPERVSATLMFSADLMLTIKSAYFPQKKNVTTSTLESLESSNRTLVIGSDTNAHHELWDPLRPNDTAGECIVDWCLQNDIKIANDGTPTRRMPHTATRSSPDVTMYRDCEVTRWEASLSPDSDHYWITFEVCIGIGVEMIAITKPRRALYAWNKANWREFRKVCDVTMLKKLRKSRKNVDAMNEAVTKGIRTAAKKTIPKGKGVSPPFWTRELTELDTKIRECTNEKHRDALIYKRRKVLAETSLQRWKENVSKMSVTDTKSWNLVKSIYAPRPLTSPVLVVNDHPLTRRQQANKLAQMYRERSTKAPDAPPMSIPYRVSGEFAPITMAELETALKELSSGTAPGKDDIHCEQLKQLGRCSKKCVLKLFNCSLQRHRVPEKWKQGVIVSLLKPNKPAKCMSSFRPITLTSTLCKLMERIVARRIRDTVECKLQPQQAGFRPGRSTSLDALMTLTDSVTHRVAGEKTAAVFIDYARAFDSVDHRCIIDALKRYEVDMHLIAWVANFLEGRTAVVRINNTLSKKIQLTCGVPQGSVLGPLLFIIAMDSLSAKLNAIPALKHCFFADDLTIVCSNTDREAIRQTLQTGLDCIASWSAEHYMEVSAEKTEYTFFGVRDRDSLHLMLGEHRLNETRNPRLLGVTMQPHKGVSKHAHTLQTAANMRLMKLRAVASPEWGASKESVRAFYLALIQAKLCYGIAAWWFNASPSDKEKLERVQAQAAHVIAGIPKYANRQDVMKEARLHKIDDIAHRRAIEYYLTRKANGKASADTVEKMFPPSHPIHTRLQSVSHLYEEVDRPEKPHTASVLQLARRPYFNTTTPGGLHSDASDSEKKRHTMQRVRRFKDYDYQVWTDGSVILDESSGAGAIIYPRQGNAVKVKKGAGRLACSYRAECVAMEAGLMKLKSVIKINESRKTKVAIFTDSLSLLMALKTGPAVVTDSILRRIWNLIIHFMKLRVAMSFQFVFLHCGIPRNDKVDELANKGNHMPQTYPAWITDIVTGITRQLRNQAQRDFAEGRGPNTHRSALLNHIKPTPKKKELDREDESLLAQFRTGTSKHFGWLHRVITRKVDELECRWCTNHTGNILKNTPVPTQNTVKMEETEEGKVVIATRQNDPVICPVCNIVCARRQAGVVHMMKIHQWVRENALAALKMAPRAAQAYNGVYRCHVCGKVFDRKGLLQQHMPQHPPTTPVVWTERQKRKREEEQSLPTVHKCQWCPKQYATYGWLTRHIRLKHPEKQTEVTQQTEMQDVSSEDEQEQAPQAYECLRCKQVYKSKTWLTRHKCNPEQSKGEPSTPLQEALPEREACKICGKEYHHSWMLRHMNAKHPGHDISLRPQPIKIRKVTKEISKLQAKEDTSGDNKNKDDNEPPLYVCDKCKRGFKSKTWLTRHKCVSIERNGTKSENVNNPHRAATQLETTTKNGSKPGSIDRALPNSDSSHTQNLNSTTRKRKRETEHDTPADEMDMCDQREEPKHKRHKAQGHTENPRREFACGRCENTYMSWCTLVWHTRTHHKNAITVKRKREEGPLEITPLAPLVHQCPHCSKVCAHKQYLTMHLQAAHGQARSSDRRNELKEKCKETSAHLLQCPALSKLRSEHGVDSLKGEDIYFSVKLANFLRALFFPTANPAPTIDTKKLITRPRVKRKRKKGHHHAKYPLTTCDTLG
>L1_TC_pol#LINE/I 138-4790 [Trypanosoma cruzi]
MEPFTWLPAERYFYPLLNSIGAYQRYTYRLRAVCDAQRQKLLLSGDIEQNPGPIAVLQMNVSCLTPSKLATLMAQGADIIAIQETWKSSEQIASMHTGDYVLYAQSRIGKGGGVAVLVRKTLRSKRIPLTIPQHDTSLEVVVVQVALDQNRDLIVASAYMRPPPQVTQSFRRLVNCLPASSPLLLCGDFNMHHPQWEPFLETSPSEVAAEFLELCTDAGLTLVNTPGEITYARGTRERSCIDLTWSKHLTVSDWSASVSPLSDHYMLTFTLHQAFKDTIPSAPPSAPKFFYSWGKCKWDLFIKDFDAQLPAYDYKKQSTGIKAFTRALITSYRRHCPRGMHKDGPRLWDDTLMEAERIATDSKARYLQLPTPDREAEMQRTRSQFFLLLRERLRNTYLRRISKLNPGEPLAWKYISGRKKASLPSPTSMLLGDGQHTYKTARRAANALNRIFLPFHPSHKAVRFSKGINRQSASLNINASFLFGQQNNSESAASFTSFSSTSSSSEPQNNNESAATFTSGSSLSSSSEPQDKNEAATTSGLVAHLHSPLDAPFNRTELLAALRNTPYGKAPGPDEVYSEALRHISSKGLRFLLRCINHSWTTGTIPVEWRRATIVPLLKPGKSPELLESYRPISLTSIVSKVAEKMVLKRLLWVWTPHPHQYAYRSMRTTTMQLAHLIHEVEHNRNHYFQVSLPKKSGIGNQLHYRPHRTLLVLVDFSKAFDSIDHRVLSRLLANIPGVNCRRWLRNFLCGRYAKTRVGHRHSDRRPMLRGVPQGSVLGPYLFSLYVHPLLNLLNSFAGVTADMYADDLSIIVKGQSREDAIPTANMVLQKLHAWSQENGLAINPSKCEAAWFTLSTHTESDYDREGRWPLVVAGCQIPVMTMGASRTTKLLGMDLDPRLTLNVAATKQCAATSQRISQLRCIAHKEAGPSPHDLRTFVIGYGASKLRYGSELIWAVATDSAKNEMQKTYATLARIVSGVPSTVDPESALLEANMPPLHVLCLRARLSIFENTRACQMDWMRRPPPEPPPRAGFRISPLSRDELYAFVDAYTKDYGITESSPREERFFRSSIPPWFAASAHRVTIGVELPIDHSITDEEELIREKRRVSEEALALHSHRSWILATDGGVDVPKSAGVGILLSSLNSSEIIEKASINCGARPCSYRTESRALLLALEKLMIPRIRHRRKTLLVVTDSQSLLAALNKGPLSQTDWTEDQIWQRLLTLTRAGWSVHLQFCYGHCGVHANELADQYATQTMESGQYTEQGIAPLWHTDLLTCFTTQLTNKWRSTIRQDTHRYLLCGTRPSDLSGKDLITQEVLHRQELVHLARARCGESELWGRLYWAVRDCTNQCRFCNISPEQSAYMRSNNDPTAPGTDTVPPSAREEDVSPVRRRTLTRRRKEKCPHCDSTLTGFSGLVSHCRSFHPEHPPPLPELKCDFCDMVFPTRRSTAQHRSRCAHNPDATRHRNSSARRRSLLPQDQPASTSTPIGPQETLHHLLLECPGTLAVRQRLGIEQDLRLGKFSQWQLLHSRKLLSLLDHLFGTQMALYS
>Loner_Ele1_gag#LINE/I 675-2033 [Aedes aegypti]
MDESDGGDTPPRDLVARTRFYQPSSAGPWVVYFRRKKKILNVLSISRELTRKYPGTVIHQVKESKLRVTAPSYKAANEIAQHEAFTVEYCVYVPAREVEVEGKIIDASLTCEDIKTGKGVFENRSIPDVAILDCKQLQSVSMEGNKKVFSPSASFRVTFPGSVLPKFVCIDSAFYPVRLYVPKVFNCTNCKQLGHSASYCDNKPRCGKCNQAHLEDACTQEAEKCSYCREELHDLQKCPAYKRRIRNESRSIVKRSKKTYAEMVKSLNPSAKESSSAIPVGNSFQELSSDEANDDETDGGDSSEVHAPGKRKSQSSPGLRRKVMKSSLKSLPNSKGGGANLKLPKKQVFDASVPCCSKDLPPPPPPIKYTSKRSSRQDSKKKATEVPRSSSKTPGAKRGLITFTALVDRICNALGVSDSFRGILDLFLPAIEEYLRELTISWPLLASIISFDG
>Loner_Ele1_pol#LINE/I 2029-5709 [Aedes aegypti]
MDNSSSEVQDMITVLQWNCHSLKPKLDTFKFLLHNSDCDIFALCETWLSSEDDLNFYDFNIIRQDRDDNYGGVLLGIKKCHSFYRIPIPTHPGIEIVACQISVKGKDLCVASVYIPPRVSINRRHLWNAVSMLSSPVLILGDMNSHGTGWGESYDDYRAAIFYDLCDDFNLNILNTGEVTRISSDGKESRLDLSLGSSSLSFDCMWKVIDDPHGSDHLPIITSIRNNFERSEQSIQVPFDLTRNIDWQKFASAVTFGIESFNTLPPLDEYRFLTELIYKSALESQKQRVPSASFKRRPATPGWDDECTQLYREKSNAFKAFRRYGTSELYLEYSKLEKRLKNLIKAKKRSYWRRFIDGLSRETSMTTLWRVARNMRNRSSSNESDEYSNRWIFNFAKKVCPDSVPAQPPSWETQRDDALDRPFTMLEFSMALLSSNNSSPGRDMIKFNLLKNLPDIAKRRLLDLFNLFMEHNIVPPEWRQVKVIAIQKPGKPASDHNSYRPIAMLSCLRKLLEKMILSRLDHWVESNNMLSSTQFGFRKGKGTNDCLALLSSDIQLAFADKEQLASVFLDIKGAFDSVSIEILSESLHNSGLPGILNNFLYNLLSEKHMSFTLGQLTTSRISYMGLPQGSCLSPLLYNFYVKDIDNCLEEPCTLRQLADDAVVSMKGPRAEILQRPLQNSLDNLSTWARNLGIEFAPQKTQLVVFSRKRNPAQLKLKLLGTDIDQSLTSKYLGVWFDSKGTWRTHIRYLTEKCQQRINFLRTITGTWWGAHPEDLIKLYKTTILSVLEYGSFCFLSAANCHLIKLERIQYRCLRIALGCMHSTHNASLEVLAGVLPLQNRFWELSLRILIKCGVSNTLVIENFEELLKLNTQSKFMRVYLYYMSSDISLPCYNPPRVRFTNDSSSVEYDLSMKQAIHGIPDQLRCITIPRIFNAKYQNVDSYRRYFTDGSRINGSTGFGVFNENSSAFRKLQEPCTVYVAELAAINFALGMISNMPADHFFIFSDSLSSIEALRSMKPVKHASYFLTKIREQMCALVERSYKITFVWVPSHCLIYGNEKADSLAKVGAEEGEIYDRRISHDELFHLVRQSSLHGWQSDWLNDQLGRWLHSIIPRVSLRAWWKGWDVSRDFIRVMSRLMSNHYSLDAHLHRINLALSNICNRCGSGYDDIDHVVWQCPDMDASRAQLMDTLAARGRQPYVSVRDVLGSRDLVYMLSIYDYLRLCCIKV
>Loner_Ele2_gag#LINE/I 849-2297 [Aedes aegypti]
MGVDDDGGGTSYPLTESSNVLNQQNTNTSMPNPCVSPQSDVSQMDTNILPSPTSPRLKAYPPDSGGPFVVFFRSKGKRLNTIQISKDLTKRFSSVVAIDTVGSGKLRVTVSDRKQANEIVACELFTREYQTYLPSHRVEIAGVVTEGSMTCEELMQGCGRFKNPSLPSVPILECKQLHSVSLVGEKKIYSHSESFCVTFSGSALPNFLVIGKLRLPVRLYVPKVMNCTNCKQLGHTAQYCCNKPRCASCGERHVDGACSIPPKCVYCNESPPHALENCPTYVRRQQHQRRSLEQRSRRSFAEMLKKAAPSAESQNIYSSLSLDDQGSDSEVGEGISFVFKGSSRKRVRLQRPTKKPRNLSSSDDPPAMKNTKPVAKVSKLSPPGFKLQEERDFPPLPGKSKIPNIPKFQTAQPKESSHSEPLGQPQGVPMFTLSGIVDIILNFFNASDPVKNIVKGLLPCVTPLLKQLASRMPLLATIISFDG
>Loner_Ele2_pol#LINE/I 2293-5985 [Aedes aegypti]
MDKLSTEVEDMISVLHWNCRSIMPKLDSFKFLVSNLQCDVFALSETWLTPDVTLPFHDFNIIRLDRSDSYGGVLLGIKKHHSFYRVDLPPMSGIEVVACQVTIRGKSLSVASIYLPPRSAISRRDLSHICSVMPEPRLFIGDFNSHGTGWGELYDDHRSTLIYDLCDDFNMTILNTGEVTRVAPPAQDGSPRDSRLDLSICSSSLSLDCSWRVIQDPHGSDHLPIVVSISNGTQQSSSIDLAYDLTKHIDWGKYAETIIDGEQAVEVLPPLEEYRFLSELILNSALQAQRRPVPGPSVRKKPPNPWWDEECKALYREKSAAFKDFRKRGSIDNYERYSSLERKFKSLVKAKKSGYWRHFVEGLSRETSLRTLWTVGRRMRNTSSVNEDRESSPRWIIDFAKKVCPDSVPVDRVRRDIPVDRDAMDRPFSMVEFSLALLSCNNSAPGMDRIKFNLLKGLPDVAKRRLLNLFNHFLECNIVPDDWRQVRVIAIQKPGKPASNYNSYRPIAMLSCIRKLLEKMILFRLDKWVESNGMLSDTQFGFRRAKGTNDCLALLSSEIQLAFAQKEQMGSVFLDIKGAFDSVCVDVLSDKLHASGLSSVLNNFLYNLLSEKHMSFTHGNLSVSRISYMGLPQGSCLSPLLYNFYVRDIDDCLMENCSLRQLADDCVVSVTGPTAAELQGPLQDTLDNLSTWALKLGIEFSAEKTEMVVFSKKHKPAKFPLTLMGKTITHSLSSKYLGVWFDAKCTWGKHIVYLTQKCQKRINFMRTITGTWWGAHPEDLIKLYQTTILSVLEYGSFCFQSAAKTHMLKIQRIQYRCLRIALGCMNSTHTMSLEVLAGVQPLTDRFAELTLRFLIRCEVLNPLVIENYEKLLEHNPQTRFMSVYYWYMTLEVSPSSVNTNRDNFLEFDCSSVVFDLSMKQDIHGIPDHFRSKFIPPMFASKFGHVSESRQFFTDGSKMDDITGFGVYNVSHSASFMLQKPCSVYVAELAAIHYTLEYISSLPPEHFFIFSDSLSSLEAVRSMKPVKHSAYFLNRIRQALSALSIRSYTITLAWVPSHCSIPGNEKADSLAKVGAKEGDVYERQIAFEEFFALARRETLISWQQKWRDGEMGRWLHSIFPQVSKKPWFKGLGMSRDFIRVMCRLMSNHYSLSAHTHRIGLSESNLCVCGVAYQDIEHVVWGCVEHRGVRSELTETLRIRGKQQKPVREVLAGLDLEYMNLIHLFLKRINIRV
>Loner_Ele3_gag#LINE/I 366-1811 [Aedes aegypti]
MFSSRDGNIPTDTFPQQEIACGNVDMASHTGTISKHGSSLTQPSKETSIQHSHSKQCDVENENVHFSQQPRIRQYVDDPNRERWVVFIRRVNKKIRVKQVTSDLIKHYPSVIFITEVNRDKLRVVFTNYKEANAVVNDDRFRLEYRVYVPARVVEIDGVVTSDSDLSPNDFKEAVGVFKNPNIPPVKIIDCQQLKKVIKNGSNSQYVPSGSFRITFEGSALPHYVTMNKILRLRVRLYVPKVMSCTNCKQLGHTKSFCSNKAKCLKCEGQHEEDACQKNVEKCVLCGLDPHDKKDCPKFQNYSSKLKYSVKERSKRSYAELVKKTLVSNMFLELSDSDDDSDSDTEYDSLPSQKGKRGRKHIPSSVMSKNKQKVARIEKVHTPEKYNLVPRDSVEFNKSFPLLSGNAHRDTSSTEPKFQSQKENTMFTGFLKLSTIIQWVLDILKAPKPIQDLLFGCIPMIANFGKQMTIQWPILSLIDFDG
>Loner_Ele3_pol#LINE/I 1807-5487 [Aedes aegypti]
MARYANQLTDHVSVLQWNCRSVMANINSLNLLISETNCDIFALCETWLIPELTVDLIDFNIIRQDRSDGYGGVLIGIKKCHSFYRIGVSNKSKIEVIACHVNMKGKXFSLVSFYIPPKVTFSYNDLETILDTIPAPWVIVGDFNCHSTAWGSDHDEKRAMPIHDMLDCYNLCILNTGNVTRIAGPQKKDAVLDLSFCSSSMVYDCSWIVIDNPHGSDHLPIVISIHNDNQRMREYVNIEYDLTKNIDWKKYSSIISEALENLADLCLEDEYDFIVNLIIDSAIKAQNKPIPNKKIVNRIPNPWWDKECNTVVKEKSAAFKVYRKVRSRQSYEKYISLERKFKNLVRAKKKSYWRKFVGELSHETSMTALWKAAKNMRNKSSVNEDKEYSHEWIKKFAKKICPDIVSENQICFDTSEDSVPMFTMIEFSLALLSGRNNSPGKDGIKFDLLKHLPDVAKKRLLNLFNWFLDHNVIPNDWRKVKVIAVQKPGKPPSDHNSYRPISMLSCIRKLMEKMILNRLDNWAESNKLISETQFGFRKGKGTTDCLGLLTTEIDIAFGSKQQMTSVFLDIKGAFDSVSLGILTQKLHRKGLSPKLNNFVNNLLREKHMYFSSGSISEYRVSYMGLPQGSCLSPLLYNIYVSEIDNCLAEGCTLRQLADDCVISVIGKDREDMQAPLQATLDSLSSWATDLGIEFSPEKTEMVVFSKKHHPAKFELQLSGKKINQSLSYKYLGIWLDSKCTWKKHVQYIKSKCEQRINFIRSITGSWWGAHPEDLIRLYKTTVRSVIEYGSFCFYPAARTHILVLERIQYRCLRLALGSMNSTHTKSLEVLAGVPPLMIRFYELGSRFLIRSEIMNPIIIANFEKLLQLMVQSRRMPLYYWHMSEDISPAIIDSEQLNMNFLQLNNDKVTYDISMKQEINNIPDYLRSKIIPSIFSSKYGRLSSDKCFYTDGSSIDNSVGYGVFNENVSTYHQLKNPCSVFVAELAAIYNALIIILNLSVGSYYIFSDSLSSIEALKSIKPQNATYFIIEIRKLLNTLTMRSFSITFIWIPSHCLINGNEKADILAKKGAIVGEIFERKIDFREFFQTCRRKAIAEWQRSWDEGSMGRYLYGLAPKISKKSWFKDYNLTRDFIKVISRLMSNHYRSKAHLKRIGLSDTNHCDCGEGFEDIEHVVWVCSKYEVKRQELIDSLPVLWKPPNATVRDALFSRNPNFLNPIYKFLKAIDFPI
>Loner_Ele4_gag#LINE/I 535-1830 [Aedes aegypti]
METDGDGTSGENSELSSTKRFRIKTYPSSFLGPFVVYFRKKEKPINVLLISSEIYKLYKSVKEIKKISLDKLRVIFGSRDDANSLLESKLFCNSYRVYAPCDSCEINGIIYDEDLDCNDIVNFGSGKFKNKAIPPVKILDCMRLSKLTFSDKKSSYMHSNCIKITFEGSVLPDYVDIDNVIFQVRLYYPKIMHCDRCLLFGHTSQFCSNKLKCSKCGEGHSSVDCNKSSDICIYCGKKHNFLKECSVYIAHQTQSNHKIKNRSKLSYSEVTKTISDLPSTNMFAPLSQNVDNEVSNDDHEHFVYKPPNKRKRIIKSIIKNDDFTNPQPSTSFDTNFPPLSSPTSRVIPGFQKNMTYSEENSNEKNNNSNSTFQKTENSGEDNSILHILEELIEFLGLNEFWKKIIKIILPFLASIFEKLNSIGPLICSLFSS
>Loner_Ele4_pol#LINE/I 1833-5525 [Aedes aegypti]
MASSKNYNLNILQWNCRSIIPKIDRLKVLVVNCDVDIFCLNETWLEETKSFRIPSFNIVRKDRNTAYGGVLIGIRENIEFKYLDFTIDSEIEYVAVSIKHNGLEFSIICIYIPPQTKFSLLELKTILNNIPSPFYILGDLNAHNLAWGSHKTDGRGSLIMDVIDDLNLNILNDGSFTRIVVPPGRHSCIDLSICSNCLSMNSSWETVEDANGSDHLPILISIYNPNFNQNNLEHCVPDLTKNVDWVKFSDLVSLALLSFDNSLSTIESYDNFSKLLVECLKKSQTKKIMQSTSKKKHSSFWWDEDCTIALKNKSNAFKLFRRSGSREHYILYCKTEAQFTRVTKFKKRNYWRNFIENLDSDTSLSKLWTVARNMRNYNVSNIPVLEYSEDWIDQFASKICPDFTPLDIKYKNSSSYNYFPNLCTEFSIEEMDLALSITKNTAPGIDNIKFIVLKNLPIDGKLHLLSIYNNFLFQNIFPMEWRFVKVVSILKPGKNPSLVESRRPISLLSCLRKLMERMILNRLELWAEKNNIFSSSQFGFRKGRGTRDCVALLTSHIELSFNKKQDVVSTFLDVSGAYDSVLIDLLYNKMIDCKLPLIIANFLCNLFSFKIMHFFHNGATKMIRYSYFGLPQGSCLSPFLYNLFTRDIVSIIPNGCYFIQFADDKVISISGKNREVIRHFMQSCLDNIDTWAHNNGFTFSVQKTKFIIFSRKHSPIDIDLYLNNHHIDQVFEYKYLGIWFDPKLTWNNHIQYIQTVCSKRINFLRTITGTWWGAHPSDLITLYKTTIRSVMEYGCFSFGSAVQSHFSKLEKIQFRCLRICLKLMNSTHTKSVEVLAGITPLRIRFDELNCKFLFQCFSNNHPIINILKSLYEINPSSKILSSFIYCSAHNVMLDTSPGFHEYSMNVHSFRPHIDFTLHEELKNIHPNARASFANLLFQRKFIGVEPKQIYFTDGSLINNVAGFGVFNFHIAHFFKLETPCSIYIAELTALHFACCLIKNCAPNIYMVCSDSFSSLHALNTINFNFKTSNIILSIKEILNDLFCRGFIIKFVWVPAHCNIYGNEQADSLAKLGVSRGIIYNRVIYPSEYFSKLKQHSMDNWQNTWNASDKGRYCYSICPKVKCLPWFDQLSLGRNFICFYSRLMSNHYICNSHLYRINIKDSNLCECGESYEDIDHIVFNCTRFSLPRKAIFEKITKLGHNIPNSIRDILACKNLNILKILYGYFNEISYFS
>Loner_gag#LINE/I 401-1777 [Aedes aegypti]
MEAEPMDESDEGFITVKRKSSDPGQMAKKKVLHEPLASTSRDDSAKANLKSRAKTYHASFNGAHNVFFMPRTKPLDVRSITASIYKKYPGVLDVIRLHPKKLRVTAKDRVQANAIVADPDYTEDYRVYIPGGLVEVIGVVDDFEYPLEDILQYGQGAFLYQSSPRVKVLEVKKLYASKMVDGKKVFRETSSLRITFEGTVLPNTLYFEGLRVPIRRPFVTKVATCSKCSQIGHSEPYCTNSVRCGKCKGPHSTAECKADTQKCFHCKQQWHEVSTCSVYRKTQAEHKKAVLFNSKRSFADVLKKTSEVNPFDTLSLLEGNEPLPNLAPLTGVKRSITPRVSIKGIRKNKTVPPKKAPRRHVDATQRQSQGPMPPRDVRTRPPSRNPPNPSNLAFPSEPRSFSRQSLPSLTEILQSLLDSLSLPEPLSGLIPLAFPFLRGMVRQWLSKWPCLSMMVRLDD
>Loner_pol#LINE/I 1780-5503 via tfasty with Kiri-4_CQ_pol, 1 frameshift. [Anopheles gambiae]
MPPMTTILQWNCRSFLGKIDSFKVLIGQHNCNAFALSETWLSPDKNITFPGYNIIRQDRHDPASDRRGGGVLIGIRSSHSFYRIPLPTPEGIEYVAIQTKLGDLDVSIASIYIPPGANLDPKKINKDLETLVTVLPKPFFILGDFNAHGSDWGCTHDDNRAPIIRDICDTYSLTILNSGEATRVPSPMARPSAIDLSLCSSSLGLDSMWKVIQDPLGSDHLPIKISIIKRSRTVDQVPVNCDLTRNIDWTKYGNQMTALLSRVEPSFSVNEEYTNLVMAINECALGAQTRPPPQARIFKRPPTPWWDADCKAAFSAKRKAFARYRDTGSMDLYIHYRGLERRCKNLLKAKKKAYWPRYVKNLKPSTSLTELQSMAKSMRNSKATNESERVSGAWLEPFAQKVCPDFAQAPPFEQSAHGSDPQMDSPFTMVELSLALYSSNNSSPGLDQIRNKLLHNLPDLARKRLLRLFNIMLELNTVPLEWREVKVVTLLKPGKPASDYNSYRPIAMLSCLRKLFEKMILFRLDNWLESKGLLSSTQFGFRKGKGTNDCLALLVSEIEMAHSRKEMMASVFLDIKGAFDSVSVNVLCQKLSSAGLTPRLNNVLFNLLSEKAMNFDNGHMKIRRVSYYGLPQGSCLSPLLYNFYVNDIDACLAPGCNLRQLADDGVVSVASNNIADLQSPLQTTLNNLEVWATNLGIEFSPEKTEMLIFSFFYNTESNRRLNLVDPKVDIFLYGKKISIARSFRYLGVWFDSKNVWRTHIDYLVQKCTRRINFLRTITGLWWGAHPKDVLNLYKTTILSVLEYGCICFHWAAKSHLIRLERIQYRCLRIALGSMKSTHNMSLEVMSGVMPLKLRFELLSLRLFVRSTVSNPLIIENFETLQEIGSKCKIMKVYRDFVSLQVHPSSFQNISSASLPESYSSILSVDTSLREAINTIPDNLRWMTIPNIFVERHGQPNVNHFYTDGSSSEQGIGFGVYNTCTEAYFKLRQPCSVYVAELAAIFYALLLISACPPDQYVIFSDSLSALEALKSVKAIKSPDYFVKEILKVLSSLFEKSFRISLVWLPAHCGILGNEKADHLAKKGASEGSFYDRPILPHEFLRAPQAFCIARWQGLWDTDELGRFLYSISPRVSLKPWFRDISGERAFIRMMSRLRSNHFALGAHLQRIGQVDTKACGCGLGFHDIDHLLWSCVEYEAARPTLLDAVEKLGRSPGVPIRDILAGSDWSLLRIIFEFCRANGLTV
>Mosqul_Aa2_gag#LINE/I 636-2126 [Aedes aegypti]
MPPGLDPFPLGDPGPSNCRDGEFAGPRFPEWGDPQGNYGQLVMMRMEAVSGNLPQAPFLLRKSVESYLGAKVDGAYPEKGGTTYVLKLRNKNHAEKLKRMSKLTDGFPIKIVEHPVLNVSKCVISCSDTCVYSDTELVEELKDQGVKEVRRITRRDGNQRINTPTIILTLQGTVIPEDIYIGWIRCRTRPFYPTPMLCYCCWDFGHTRARCQHQNNPTCGNCSGKHQTDVENPCLLAAFCKRCNTNDHPLSSRKCPTYVKENEIQHLRVDLGISYPAAKRQYEQRHGSKSMASIVADSNDRRYAELSAKLDNVLKVVKSKDAEIETLLTELKNKDAHIEKLESTMKLTPQERLNTVKEHGTIKDLVNKIHSLESELARKDREVAMIREIYIPKKSSTSTGNKITKPDVSNGCNTGHDDRNSSHTNQSEASQIKKTGKKKKANKTDSYERLNKRTKNRLSPSTTPECTFTPETSPADIEISSGDEPMLNVSGYISDS
>Mosqul_Aa2_pol#LINE/I 2557-6531 [Aedes aegypti]
MYLERQSCIGEALSTLRFRTQPRISPEDSRWPTLPQSIRSNAALYDSYQFKHRGTSIPKAGSSGWCLPIVEYTGDDCSAPSRREITETVFLSRPPTPSTRSLSEQPTLRHPRNISSMPSVSTLFAIQWNMNGNINNLPDLELLVRDQQPIILAIQETHRINTNRLNHSLQKRYSWTLKCNENIYHSAAIGVLPTVPFSPLPLNTDLPIVAVKLEYPFPMTVISGYLPNGNIPDLKLRLFNALQSLSSPILVMWDVNGHHPEWGSVSPNDRGSLIMDVAEKLDLVILNDGATTFTRGQRNSAIDVSLCSPSIVNRLLWTAKEDPMGSDHHPIFIHIDEQPQATSRRPRWKYDQADWSHFQTLIDTEVSDKPPDNIEGFLSVLHQAASTSIPRTTPNPGRRSLPWWSPDIKKVIKERRKALRAAKRLADDHPEKSKLTEIYRSKRNECRQRIRDAKKKTWEDFLEGINANQTASELWNRVNALNGKRRATGMTLRLPGGLTRDPLLIANALADHFASLSSLDRYGRNFILKNQASIDSITNLVIPEDNTPLRINSPFRMEELNFALRHCKSKSAGPDDLGYPLFQHLSIVSKATLLDLLNKTWIENTLPKSWTHSLVVPIPKHGKAATSPGDFRPISLTCCASKILERMVNRRLIRFLEDNQFLDHRQHAFRPGHGAETYFTGLGDVLQDAMGKGLHADMASLDLAKAYNRAWTPHAIRRLADWGLCGHILHFLKNFLKGRTFQVIIGNNHSSIRAEETGVPQGSVIAVTIFLVLMNNIFEALPKEIYIFVYADDILLVVIGRTLKFIRRKLQAAVSAVARWAANSGFDLSAEKSVISHVCRSRHRVLQTPVMVNGCPIPCRKTMVILGVQLDRELRFDAHLNAIKRNYQTRINLLRTLSKPHKSSNRDILVRIAKSIINSRLFYGIELFGLAGDTLITRLAPTYNQSIRIIAGLLPSTPADAACVELGVLPFRYQATETLCCRTIAYLEKTTGDHEVFLLREGNRALDSLAHQELPPVEQVHWVGARRWDAPDFLVDTSVSKRFRAGDNSPAMRSHVTELLASKYRNYHHRFTDGSKYLDRTGFGVTDIDKSYFYRLPDQCSVFSAEAAAILLASTTPAPKPICVISDSASVLATINSSSTRHPWIQAVQKNSPSQTVFLWVPGHCGIRGNVEADHLASKGRSGRLFTRLTPGMDLKNWTKSQIRSSWALEWVNLRDKFIRKIKGETKRWIDTNNRRDQQVLSRLRTGHTHATHNMGNERPFRKKCIVCNTTMSVEHMIINCPCFQAPRERHNIPDSIRDALSNEASSEAAIISFFKDAGLYNKI
>Nimb-1_CQ_gag#LINE/I-Nimb 350-1714  [Culex quinquefasciatus]
MASSGGGMYAFPPTLDPSWSLKGSSRYVTVQAPNKGSLATVNIFLVTKSIRACATVEDIRKNFKAGTYTVRVPNEAQAKQLKDKLTVLGDQITKVEVVDDEFRNTSRAVISCRDLIGVTEEQIVEELSEQGIKAARHLKKGVNKVETGSVVITFNKPHPPERVQVACHSVAVRPYYPPPALCYGCFEYGHISKNCRGAKACANCSGPFHGDNIDCPNPAKCKHCGEGHAATNRQCPKRKTEEEIVRIKIDRNIPYHEARKLLESRTNAGNYAKVAAAGSMNTAEQVNIEEEKNKWLSEIKKKEESLKVLELKYEQKFEEMLKKQSEVDQSYLKLQKCFEKSSMQIEYLTKELENKQHYITLLEQKVKTLTSNKMTPNEERRPMPTKRDRSSEAKKNDELDSDDSNRSRSPAPKTLAIETTTTSKDDLISLSETIYVEVESSSSMEFDPNSISPNS
>Nimb-1_CQ_pol#LINE/I-Nimb 1714-5325  [Culex quinquefasciatus]
LIQWNCNGVRSKHAEIQLLINKHKPTVIALQEVKLQHQNYSIKGFSIFSKLRSNHGGGVMLAVRDGVDAEQVTLQTTLEAVAVKIDIPVKATVCSIYIPPNEEITRSDIEDLLEQLPGPVILAGDLNAKNELWSNDDDARGRTLASTFEETNLVVLNDGADTYQPHQACQSPSTPDITACSAPLASRLNWKLAEDVHSSDHFPILVGFSGVSVPEKRRQSWIIPSADWNKFELDVYNSINPEQQYTIEELTAVIISAAEASIPKTKEDIHPRSVPWWNERVAEAVKQRRRALRQLQSVRKQRRVNETLIQAAHEEFKQARMKARKVIEEEKSRSWQEYVSTINEDTPPSEMWRKIRSISGKRSSTRTWSVKVGDRQTSDSKEIAEHLAEFFEQSSSDSSYPDDFRTRKTRVERRPFSFPGDRGANYLQTFSKDELLTQLNDLSGSSPGPDGVHNTMLQHLPAIGKDKLLDAYNSIWTSNTFPATWKETILVPIPKPGKNPNIPGNLRPIHLSSCVLKLFERMINRRLMDTLEERNVFGQHQAAFRKGRQTLDTLASIESYGKNAIATKKHAEFLFLDIEKAYDRTWRRLILEGLAKARIGGHMASFCSRFLEDRRFRVHFNGEVSSLKVLQNGVPQGSVLAVTFFLLAIDSIRQYIDRDVFLELFADDITLGVSDVNVRRARQKLQTVVNAIARWSKETGFKVAISKTAAMHVCFKRFHAKKQPTLKLENQEVEFVGSHKVLGVWLDYRLSFKRHLAKTKAECRRGLNLMRCLGKTKFGADRVTMIHLIRATLLPKLLYGIPITSGAGESEYMKLAPVYHEAIRLATGAYRSSPIDSILADSGLLPFNFLVDEHLILYSTRQLARNRINRNYPVALRARTTATKLNVNMSQVIVADAPAPNDWVLKRGTCRADRFGCEPPAVQRAVFRQTVGELYPNHAQIFTDGSLNETGGVGCGVYSSSTSRSITLPSQLTIFSAEAYAILEAIELAKRNPHQTVIFSDSKSVISAVKGNKTHHPWVVKIRRELARLRDSVELCWVPAHCDIDGNEKADELAKTGASSTQNAELEEIPYPDFKLCVKKLLRQRWNQLWYSCDTKLRRIKESSTEWLSSRTLTRRDSRAITRLRIGHTHLTHGHLMANCDPEPCETCGETTTVQHILVDCRKFEHQREESGIANSLYVALGDNLDEIGKTLEFLRISNLYCSI
>Nimb-1_DPu_gag#LINE/I-Nimb 250-1956 [Daphnia pulex]
MNEEEIRAAKAAAASARASLAPLMLNEQGIAEEPEPDSMEEDLFEELRTEEQEATTEAEKEEQRRRRKAAADKWLRDKGFTMVQRGKKGEPSNKRGRKDIETPSPAGETESSSLPSRGKPPPIPPRRSEATTESSQQVKQPPANRMTTSFETRLVAKENDMIVDLKKVSPILINKRLSEQVSKGSVSSWKINPGGSLTVVATGAAEILEVMAIQTMGSWTISVVPKTCKGVVHGVHHLITKEEFLEEASAVNQGNVVKIVNAARIESRPGGPYKSTSSVIVTFEAAELPDSVKILNSIHRVTQYIPEPTQCYKCRRPGHIAKECGGKQRCARCGGVHLTKDCTVTREHWKCPNCKGPHSAAFRGCPQWKEAKAVIRIAVVENIPRSAAVAKVRSGQTYAAAAKATDQSDTQKEKTSEPNNAGSSDKSPDKNAQTTEPLQKVAQQKGRKDKLSSAEKKLEAFMKIMAQFMDILSAYTNNQHLRTLAGAAKALLTHESSDNSDSSKDDQSSDSDDVEEEEITPALFTTGIQKTPEKKKKNKKKKKNKRKKEDDPAADSTASVQTSQSKDAT
>Nimb-1_DPu_pol#LINE/I-Nimb 1956-5696 [Daphnia pulex]
MMTRSTAFSFNNPKTQIRILQWNARSLNSNGTEFVKFLSEMTSPPNIICIQETWLDESKEFEIDGFDHIRADRRDRIGGGVATFVAIGTPFRQIDLPPSTLEAVAVEVFTDEKSISICNIYHSSQENDVQVFENILRDLPPDSTPFLCGDFNSHHEMWGGKKNDHKGLSLVSFIEENGLVALNDGNITYRSSSGASSVLDLTITTPDIAAKCSWSVVSESTFGSDHHPVMTNIAIPVPVERSNNSRWNFKKADWVGFAQTCADISYMDLFSTDIDVFNENVTHAIILAASNHIPVVRQGNHKPGVPWWNAACADAIKEKEKAWVRANASRNPDDYKIYSTLRNKSRSVMRNAKKEHWRAHCSTINKNTTSRDLWEKTNQMLGRNNKTKPISVLLDKNGACVTESSAKANLFAKHYKAVSSDTNLSESFLQHRRISEQSMEDGEADEPDGRIGDAETNADFSMQELTTALKEAKDTAVGCDRISLSMLRHLPDTALRTLLALYNESWKQGTLPKGWKHSLIIPLLKPNKTASKPESYRPISLTPVPCKVLERMIKIRLSWYLEKNLLLAPNQSGFRRNRGTMDNLVRLENSVQSALNNKGYVMAVTLDLEKAYDMIWIKGLIYKLKKLGIRGNMLKWITSFLVGRTAQVSLNGTQSELFSCLNGTPQGSVISPLLFIILINDIAKKRRSCMSGMYADDIFIWQKHRNIHFLRKKVEKDTQDVIVELRLWGFLVSAAKTGAIVFSKRNIPENLSITVDGASIQVQKSIKLLGMTLDSKLNWCKQIDDVVSKCSKVLNFLRLISGTKWGAHAKPMLQIYQALIRSKLDYGGELIESASITAKKKLDKIQAQALKTVVGAPRDTATEALLRETGEMPLHLRRNLASVKHYLRCYEVKSDLLAEKEEWFKNAKQCFLSRVESVTNTLDHHPKSVEKLSISKHPPWQALLPEVTTYTPNDLKWQNVVHIYTDAAKSKDGRCAVAFVVPEKVIVEQKRLVDGLATAKCELVAIHLAVKWAEAHAALGSFVILTDSKKALQILNSSRENNSVKTSTVDTWRALSRAGTTVSFSWVKGHSGISGNEQADRAAKNGLELKPSLSCRRDTNDIRENVEDLLLKKWQGLWDKPKTECGRFTHRHSPVVSRIASLFGQSRSEQVFLSQIRLDMLPLNHRLFKRKKHPTGLCSNCDAEEKENVEHVLLACPAYSKEREEMVYVVSENTPTLQELLNFNDEVTLKAVLDFFNAIGIKARLGF
>Nimb-2_AAe_gag#LINE/I-Nimb 630-2009  [Aedes aegypti]
MATAISSLDPPWGGHSKHGADRNDRTIPVWMDRHGMHGQRIILSLRAAEGENLPENPFILSKSINQVCGGNVEAANTEEKDTKYVLTTRSVNQAQKLLKMKQLIDGTKVEVVLHPKLNVRNCVITCRAAIKMTEENLLEELAPQGISKVRRITRYENGQKVNTATLVLTVNGTVVPEYINVGLLRVPTRLFYPAPMLCFNCYSYGHTKMRCQNTPVCKVCSGTHTLGKDVSCTQQPACKNCKDSHSPASKKCPLYMKEEEIIKIKVESGVSFAEARKEYQRMHGDRSYSAVTGAQARIQDIRKENEKDVEIRKLKEELANLKEVMSQKSEKEKEDETVKLREEVIQLRKIIDDFKNGPAKQQMDTEERNEFSISEEEMSNAESQSVNNDNESEGYAPVAKAVRRKSKRTLAKSVKTVREKEGDDTDRSRSSRSGHEPINKEKSNSSQKKRGRPPKHRDDQ
>Nimb-2_AAe_pol#LINE/I-Nimb 2002-6060  [Aedes aegypti]
MTSERNMLNDGNNDMDRSNGNGTENDICDEGRSETVSWLGLDEEKVVSPLFRRGENSPRNESEDVTLPPVLCQLPRSSANYAATNEAQLRNGTTQASRIRNQATKLQPAILSWNIQGIQTGRQDLDLIIKDRKPLVICLQETMCSQRTQPRITGYTIYNRPRPNCQRASGGVLIAVKNGIDNVEIEMETTLEAIKVNIGPPLNFSIINVYFPPGANLNISEVEALFAGPNPVLLVGDINAHHPVWGSSFSNKRGKELEEVFDKNDLVILNSGEPTYYNQTTGKGSCIDVAVCSTHLAGNLEWEVLGDSYGSDHMPTLICNPRETQENPTRPKWKIQEADWEQYQRIVDFPLIGDPEEQMKGITSGIISAAEQSIPRTKGAPSRRVVPWWNDEVHVAVKKRRTALRRMKSAPSDERREELARDFKTARREARQVIKSAKEESWKQFVSSFNVHTSVKDMWNKYRSLQGRCRQACIGGIKYEGREETTSVGIAEAIAEAFCSVSSDTSYSEHFRDVKQQTESNPFLMFDAPEEEYNKDFSMYELDEALESLKDSAPGEDNVHYGMLSNLPLDCKYKLLETYNKLWQQSVYPVEWTKSIVIPIYKGKGDRTNPLNYRPIYLNSCVAKILEKMVNSRLIFILETKKLLHKYQYGFRKAKSTTDHLVELEGTIREHLNKGHYAQAVFLDISKAYDTTWRRLILEKLKFWKIGGHLLRFIERSLACRTFRVLANGTLSSEKKMENGLCQGSVLSVTLFLVAINTIVEKLPGEVKCLIYADDVVIIYGGNDFEKNEEILQNALNTISDWQQRTGFNVSAEKCATVTFKTARARKVPLTSSLTINGSKIPKEKTFKCLGVWFDQSLRFREHVENIRASCQQRMKILKCVASSSWGGDRETICKLYKATILEKMLYAAPLISSVSKDILKKLEVVHNAGMRAISGAFRSSPSESIRAEAGMPSFNTYVDQRTALYAVKLKALDPQIIEETCETTSSEDESQETTTYESSSGEEWGSVKPVPELTIRERGGHLLQELEVQVPLLNIFTLPSCAPWKRKKILVDKTLYTAMRRKQPEIMLRKLFNERRVTKYRVHKTLYTDGSKMSNKCGYSVVSDNMSIRKRIYDESSIYGAESLAAKEAIMLVANEEGAGAYLICTDSLSVVTCLESSKVKSLWKDQMLEIYTQCLQNRKEVTFFWVPSHIGIEGNEKADREAKLALEQRIDTSIALDYKEMKKILNNKIIIKWQYEWGKIRENKLREVKDSVIPYKTRGKTRRENVVLTRIRIGHTVLTHKHLFERMAAPMCQWCNELLTVKHLLVECISLDEERKKVGLPISLREILADDEERIESVICYLKNINVYNSL
>Nimb-2_CQ_gag#LINE/I-Nimb 771-2078  [Culex quinquefasciatus]
MAALNPLPPGDPPDGNAGPSGTNVNARTMPEWMDRQGMFGQRIVLLLQPTGTSMLPNNPFVIGKSIEKTCGKIESANTEENGTKYALKTRSVDQARKLLAMTKLIDGTKVEVVTHPRQNVCRCVVVCREAIELSEDELVTELSAQGVVNARRFTKREGNNRVNTATVCLTLNGTVVPKHIWFGPLRITTRLFYPSPMLCFNCSDYGHTSKNCKKEAVCFNCSLQHTVEPSEGGRCILDPYCKHCKGAHPATSKECPKYKKEVAIIKIQVETGVTFAEARREYEKRNQAHGLPTHAEVVGAQKRLEAIGKDNEKDNEIRLLKEEIEKLKNTAMDKNKDEVITSLRYELEQTKRLSSALMKKLRENKFAKNDSEIESDKDSSEKEGSPKQAKFAKGQAGKLQDNTSSQPEKNPRRGRGRPRKTPTLEPGKFDAEMHST
>Nimb-2_CQ_pol#LINE/I-Nimb 2084-5908  [Culex quinquefasciatus]
MDLSTTNKTKDKEPAMNKNYSNIISWNTQGLRTSKPNLKILCSKINPSVLCLQETMCSSKDQANINGYSIYYRPRAGGDRAAGGVLVGVKPELDSEEIDLDTNLEAIAVKVGPPFNLTIINTYLPPGQAIQASEIVHLINQVPQPRLLVGDINAHHPLWGSETFSARGLMFEEVLNECNLVVLNKTDPTHISVATGTLTSIDVACCSTEIIDQLDFSVLQDAYGSDHLPLLLTLPDTAHAIRTRPKWKIEEADWETFQTTVQFPLMPTATQQISSITQKILEAAEQTIPKTTGMVNKRAVPWWNQEVASAVKSRKKALRALQSAKRNNLENQEALAAEFRAARSHARKVIQEAQRTSWINFVNDFTVQTPVKEVWENFRRIQGKRKTNRISAITAEGGTVSKDEDIAEALASSFASISSNDAYSPEFRAFKDQVEQTPLSIPADTSAEYNKPFLFTEFEEATAGLRGSSPGPDTVHYSMIVKLPLDCKRQLLDAYNRLWLGSVYPPEWTESLVIPIFKNCGEKANPRNYRPIFLNSCLGKVFERMVNNRLVHIIETRRLLHPHQFAFRKGKTTVDHLAELEKVVRAAWNKKEYVQGIFLDVTKAYDTTWRRLVLNQLRDWNIEGLMLKFLDRMLENRSFRVFVNGQLSQSKIMETGLCQGSVLSVTLFLVAINTLVARMPPSITTLLYADDVVLLASGRDVEEVENDLQAALKAVECWQSSTGFKISAEKSATVIFRSYGTRKPPSRAALELNGTLIPTKKQHRCLGVILDQHLPFKTHCEEVKAACRQRVQLIRCVARRSWGGDRKTLIKLYRATVLEKILYAAPITAAVSDNVLKILEPTHNAGLRAICGAFRTSPVDSLQAETGIPSLRVFFEQRTAIYAARKAAISAQSRTQPAEDDSQSAGSSTESSYDSNSSGEEWNSTRHRGPLRGVETAETRGKAILEELELPLPELKIFTLPLCPPWERRRIRIDKTLLEAERAGATSTQLKELFVSRRNTEYRLCETIFTDGSKKDGRVGYAMVRGDLVVRRRISDLSSIFAAECGAITEALRWIIGQNRVGTYLVCTDSLSAITALGKRKTKCRWKDEINILHNQAECNGTEIIYMWVKSHVGIAGNEKADEEAKQSLNDRNIWDRSVEFKEFRTVIKKRTVWRWNAEWSRKVGNKLREVKNSVLPYRDVFVGSRKEDVILTRLRIGHTLLTHQYLLEKDSAPRCTRCNLALTVKHILAECPEFEEQRRRAGVPSNVREALADDRDMAKNVLKFLKATDMYGKV
>Nimb-2_DR_gag#LINE/I-Nimb 6-1244 [Danio rerio]
MARRIDSKAVGNNWNVSGQENADGSDESGNEVGDMEVVCGNYEKWDMVKNNKRKKKRRNKSDESDSDRCSALEETVTVEYKVFAKPVQEGDTFGGMNPIQLTKTLHKEIGIIKSAKILRNGSILIFCKDEKQQAKAIKVNKINGKKVECSKTNGKRYVKGVVTGIPVNVSADEVKASITNANVVEAKRLRTNRNGSACDSLSVMVTFDEETLPKKILIGYMCYDVRLYIPPPLRCYKCQRFGHIAAFCKGKQRCGKCSGEHEYGKCEEGAKLKCCNCGGDHSSAYRGCEVSKRQAEVQRVKAVQGISYAEALKKVPEIMTVSKQNENRNKNTETCQKCEQLKAETLIVSKNDFVIFMAEIINCSAQTKSRNERIKIIIKSAEKYLDVKDLLWETVRDILNEDTQSSQPGGGTS
>Nimb-2_DR_pol#LINE/I-Nimb 1248-5006 [Danio rerio]
MLNVLQWNARSLIANGQEFKKYIDNIIEKPNIICIQETWLKPQLDFNIKGYNIVRNDRNHSRGGGIATFIKSGMKFRIEQINTKYESILIKVWTDRGCIDIINYYNPCDKLNQNILEEVMGVRQDSVLWCGDFNSHNSLWGSNSNDANGILLEEFIDEKYLVCLNNGEGTRYNCFKNTESVLDLTFISSSLAAVSTWKVLKHNTIGSDHYPVVTKIGLKIMYEKEDRIPRWKLEKVNWKEFQELCDKRVMTIQIINQRDVNILNNKIVNEIIQAAEEIIPKSKGVGCTKNVPWWNNDCKAAIKARNKAFRHLKKHHSLEAMIMYKKAQTILRKTIKTQKRIFWREYCNSLGREVQLSEVWGMIRRMAGVRRNYELPVLQYGDIVAISNLEKAELLVQHFRNVHSSDNLSEEARKCRNTTLTKHPDLLKKVKTTENPLDLQFNMFELKRAIISARQTAPGKDEICYKMLSHMSEASLEIVLNLFNQIWDMGQLPIAWKQSIVVPILKPGKNPSDPSSYRPISLTSHLCKIMERMITERITYFLESKNLFSPYQSGFRRGRNTMDSVLCLESDIRKAQTNKEVVIAIFFDIEKAYDMLWKEGLLIKLKSLGVTGKTYNWVMDFLFGRKIQVRVGKEYSHEYTVENGTPQGSVCSPLLFNIMINDIFSQIEQSIGKSLYADDGALWIRGRNVSFVQKKIQNAIFEVEKWANKWGFKLSVAKTQVICFSRRHKTISLALKLYGQPLEQVKTVRFLGVWFDEKLTWKDHLNKITEKSKKVINVLRCLSGQEWGASRTSLQNIYWALMRSVFDYGCIAYMSAAESNLKKLDVLQAQALRICSGSFRTSPVSSMQVEMGEMPLSIRRMKLMMAYWVNIQGQIESHPTKRTLLECWEHEETNFISFGWIAEAKARIIGLDQLQYCKAVPIPYIPPWFFPLPKVDFNIQQELKDNNNILPTKYIVQNYLEKNYKESIFLFTDGSKDPQTGHTGAAVYIPVNQYHIKKRITNNISVYTTELIAILIALQWIEENDIYNVVIASDSFSSLESIRSGRSSYRMDILNNILSKTYYIKMKGKSVYFIWVPAHVGVEGNEKADFLAKQALRISKVNLEVPLSKAEAKIMIRTYAQSIWQVHWDNIDTGRHLYNIQKQVGTGRKENRNRREGSIITRMRIGHTGLNHTLHKIGKHPTGQCIHCNQQETIEHILFHCSXYNKERNDLIQSVKKSNLQHFTLAGLLGNKSSEVYNDIIKFIKETQLEERI
>Nimb-3_DR_gag#LINE/I-Nimb 38-1231 [Danio rerio]
MAEGSVDSGSDPEMEEERVDGDSGGNASNEWSVVENRKRKKSWAQISESDSEKGSHQARRRREEYKVMLKFASDSVNTINPLKLTKTLKEMLGTIESVKTLRDGKMIIYCKDHKQQKMALAMKTLLGHKVICSIPEEKKWIRGVITGIPTDVTVEKIKRNITGAAVKEVKRLKCVRNNEKVDSLSVMIHFDENKLPERVYLGYLSYNVRLYVPPPIRCYKCQKFGHVAAVCRGKQRCARCGGDHEYGKCGQEVKPRCCNCGGEHSAGYGGCQVRKNAVQVQNVRMSEGISYAEALKKVKQTSREPETRVTESQQKATMKEQNKDNEVCIDKVSFVTFIAEVVNCSAQTESRTERIKIIIRAASKYLELEGVTVDMINDRLKIQSGTSQTVYSQPCGSI
>Nimb-3_DR_pol#LINE/I-Nimb 1219-4992 [Danio rerio]
MWKYIMVLTILQWNARSLIANGQEFKKFIVDHENSPDIICVQETWLKSHLDFVINGYTSVRKDRDKSNGGGVATFIKQSIGYRAVEITGEQEAVAVEICDGTQKVRIINYYNPCDKLSKDNLEHIQGNGNNKIVWCGDFNAHNTLWGSKKTDYNGLIIEDMLDWGGLVCINDGGYTRVELIKGKYSNLDLTLVSESLAGRCDWKVLKQNTIGSDHYPILSSIGIQIIRTVVERMPRWKFRTADWENFKELCNNRLSEIDRCEDDVEVINSKLCEVLKSTAEEVIGRKKANGKKKAVPWWNEECSEVVSKRNNALKKVRKTLNYNDFINYKRAQAIVRKIIRRAKKNYWREYCDSIGEDVNVSDIWGMIRKMAGKQRNNNIPTLTENNRLVISDMEKAEVLAKNFARIHSNANLSEEIRRNREQILIRNPWLLENKGPSESTLDREFTLFELKKALAESKKTSPGKDEICNEMIKHLSDNSLCIILKLFNKVWESGILPAEWKHGVIIPIAKPGKDQSQPNNYRPIALTSNICKLMERMVMSRLVYAIEKENFFAAYQSGFRKGRNTMDSVICLESEIRKAQVNKEVLVGVFFDIEKAYDMMWREGLLIKLEKMEINGKMYNWIKNFLLKRTIQVRVGSAFSQIYKVENGTPQGSVSSPILFNIMINDIFSKMELGIGRSLYADDGALWKRGRNVVHVERCLQNAVRTVQDWADEWGFRFSTDKTQVICFSKKKVNPNININIYRQKIEQVSVIRYLGMWMDVKLNFNMHIQKIIDKCKKGINVMRCLAGAEWGACRFSLKRIYNALVRSTIDYGCVVYSSAAKTQLLKIDAIQSQALRICCGALRTTPIIALQVEMGEMPLKIRRIKLKMRYWVSIKSQEERHPVKTVLKECWEYGHKKIDSFGWTVKDEAQNMGIRDINLAPAVPTSAIPPWLFHKPVVDLLLHEEKHKNNMLNEKEIQQYINQSYFNYLQIYTDGSKDPKDEKTAVAVYIPKFNIKISKRITDRLSVYTTEIVAILLALQWIEDVKPLRSVICSDSLSVLNNLITGTSKARQDIMNEIMQNLFRIRQGGLFVSFLWIPGHMGVVGNEEADQLAKEALQHTQIEIKIKISKSEVKNIIAKETGRMWQREWDNGEKGRHMHNIQGCVGGTRNKFGNRRNDVVITRLRAGHCLLNQYKFRIGKHETGCCDKCGKIETLEHVITECVAYDNQRYQLVQGLSIYGIKNLSFQTLLGNSSNQVEIIMQLINYLKETKLINRI
>Nimbus_gag#LINE/I-Nimb 554-1936 [Biomphalaria glabrata]
MDKKTHTKLLAPDLCLGKKRRIDDKKEEVPKSCATWPSFLVVRCTEEGKSLTKLSPFIIYKGLKSVVGEPKSVSKLHKTMELLVEVDSKTHSDGLLRCRRLCDLQVEVMPHKSLNTSRGVISSRDLLECSEKEIVEGIEGVTHARRITRRREGEEIKTATIILTFGTRTPPEYVKAGYLRVPVRPYIPNPMRCFKCQGYGHGAAVCKRNTVCARCAGEGHEDKGCTAQFKCPNCQAGHSAYSKDCPVWKQEVAVQEYKARNGCTFSQAKSAVLALPKGQFGLTKTYAQAVAKKGRSIATQTDTLTPPPPPPPPTQKKTPPKNTPLKKQESPVVMLKNRFSVLADESMETEQHVKTNTPGEPGDIMSDTGSPQRTQPDTPTSTELEVDQLPKGRNQSGEDARGERGGNNLRSNQRDLPSPERKTSPKRGLSSSPSKPKNKNTKVTGIKGNPSGGLPRPNSSK
>Nimbus_pol#LINE/I-Nimb 1957-5622 Previously partially in protein database as LINE_Bloodfluke_pol (gi|283590|pir||PC1123) [Biomphalaria glabrata]
MDSRIVQWNCRGLKANYEEMQLLMDSETPVAVCLQETFLKDCISFRSYRAYTKNVEDAERASGGVCILVKDSIPHERVELQTTLQAVAARITLHKVITCCSLYLPPGAPLNRTDMEDLLKQLPRPYLILGDFNAHNTMWGSNNTDTRGRMLEDIFLQHDLCILNDASPTYLHPGTGSFTCIDLTVCVPGLLDDFKWSVSNDLRGSDHFPIIITNNLPSLGRPQRWKLKKADWEQFQKRCSEDITENILHEQNPADTFASKLLSIARKVVPLTSANPKRPSKPWFDTACKSAIGDRKKRLAAFIKNPSQENLKLFRIARAKARQTIRSAKRNSWRSFVGSLDAKTSARTVWKAVRRIKGKESNAIGHLKNQGRTVTSPREIADCLASSIAEKSSTAHYTPEFQKVKTREERHPIDFRSENNEDYNKPFSLEELRESLDKSHDTAPGEDEIHYQFLKHLPEPSLAVLLGVYICVWQTGAFPNSWRKATVIPIPKPGRDGSDPANYRPIALTSCICKTMERMINSRLVWYLESNKVISNYQCGFRQGRTTTDHLVRLEAYIRNALLRREHLVAVFFDIEKAYDTTWKHGILRDLALMGLKGHLPRFVEEFLKDRKFQVRVGNSASDTHDQEMGVPQGSILSVTLFNIKINSIINALSPGIECSLYVDDFVILTYGKNMNTLERKLQLCLNKIQGWANYNGFKFSDSKTVSMHFCNLRGLHPDPELFIHKKKIPVVKTTKFLGLTLDSKFNFLPHIKELKKKCQKSLNILRVLSHTDWGADRDTLLLLYRSLIRSKLDYGSIIYGAARKSYLKILEPIQNAALRLCLGAFRTSPIPSLHVEAGELPMDIRMKKLAMQYIVKLKSNPTNPAFDSIFNPTEVELYNRRPNVIQPLGLRMREPIQNLTQPIDQISKIETPQNPPWLMNKPKLNLSLLNFKKENTDPSILQVHFRELQESYGDCGTIYTDGSKMEGKVACACSFRNKTISRRLPDGCSIFTAELHAILLALMAVKASERSKFIICSDSKSALQALGRMKTDIPLVHKSLKLLDLITADRRDVTFIWVPSHVGIEGNEAADREAKRALNHAVSGTQIPYSDLRQSIASATYREWQNRWEAETHSKLRQIVADVRWRPTSKGLTRRGSTTMSRLRIGHTYITHSFVLKREEPPLCEYCDSRLTVEHILVDCPRYQDVRAKHFRATNLKTLFNNVDPGKVLGFILEVGLSTKI
>55236006_Aga_pol#LINE/Jockey gi|55236006|gb|EAL39201.1|  ENSANGP00000026167 [Anopheles gambiae str. PEST]
KSYRLISLLPSLGKFFERIILDRLQSWESNLIRPEQFGFRQEHSTVHQLLRVKSCIEQNKADQNSQLLDVAKAFDSVWHGGLLHKLVDFGLPVYSAKIISSYLKHRTFRVSLDSVLSYPNPVPAGVPQECLLAPLLYILYTMDIPPLPCDGMLFLFADDTAITVKGRSDRTKKLQRCLHIFLRFAADCRIKINPSKTQVIVFIYRFKKTLTPPLIRGLIVDGTTVPWSPSVKYWGLHVESVLERGHLLLKCLYPLISRRSRLTQSNKLTVYKHIILPVATYAAPVWSTCAEAQLCRLQIVLNKLLLMIT
>55238095_Aga_pol#LINE/Jockey gi|55238095|gb|EAL39774.1|  ENSANGP00000025957 [Anopheles gambiae str. PEST]
KIPANYRPISILSCMGKIFEKIILKKLDSHTKSHNVIPSFQFGFQANFATAHQLNRLANTITSNRNSKKSTGLVTLDLEKAFDTVWHDGLIFKLISNNFPPKLILLIKSFLSNRSGSVHLHSFCSIHSFTKPFKPLAGLPQGSVLSPILFNIFTSDISKMKGVKKYAFADDFAISSSSSNPDSILCSLNKGIRKYVTLCEQWELKINDGKTEAIYLTRCRSARNLPNSSLMINNNEIPWNNTVKYLGVVLDKKLTFQKHIEEKLVSGTNAIRILYPFINRNSKLNLRNKLLMYKSLVRPIITYASPRWRNSAKTHIKKMQIFQNKFLKRILNLPPWYSTSIIHRKAKIDRISEFIEKINIKY
>55239464_Aga_pol#LINE/Jockey gi|55239464|gb|EAA10695.2| ENSANGP00000020881 [Anopheles gambiae str. PEST]
IRNTNFASKVEQLPPHSPAFWKMAKILKDKPWPIPPLKSNLPAHVVITPIEKSNALANQFAEAHRLGLTMTSPHDVEVSTTNSTVDNAPPTLPPEERITVAEVESTIKCLQNMKAPGFDRIFNICIKHLQNRAISLLVAIFNSCLSLNIFPQAWKSAKVIPILKPGKDPTLPSSYRPISLLSAFSKLFEKIIYCRLRSSVNDLQIIPVEQFGFRSGHSTTHQLIRLQNTIQQNKRVARSTAVVMLDVEKAFDNVWHDGLVHKLYQYKLPLFLIKLIKNYLQHRTFRVVIGPYNSDVQHVPAGVPQGSVLGPLLYLLFTADLPALPSGAQLFLFADDTA
>55239499_Aga_pol#LINE/Jockey gi|55239499|gb|EAL40159.1| ENSANGP00000028487 [Anopheles gambiae str. PEST]
EVDDSLSVVDETQSSIPRDSRVTTGKIHSALRRLKNMKAPGFDGIFNILLKHLQNKAICLLTNIFQRCLELGYFPSAWKCAKVVPILKPGKDPTIRMIYRPIRLLPSLGKLFEGIVCGLLQASVEDRDIFPSDQFRFRSGHSTVHKLLRLKQYFEQNKRVSKSTMVAMLDVEKAFDNVWHDGLVHKLVTFSIPMYLVKFISSYLQQRTFRVALCSTLSDSHPVSAGVPQGSLLGPLLYILYTADIPMLPDGSPMFLFADDTAIAAKGRSLVEMRRRIQSCLDTFVQYAANWKIRGCAMVVPHRLKQSLIPTWQTRLLINGFPIEWTENVRYLGLILDRKMLSHGQVERVLHLRHKLMMSLYPLISRRSKLSFENSQSVYNQIINPAVLYGCPVWGSCARINRRRIQVMLNKILRMIAQVHMYTSNRTLYKLCRTIPVEEEILK
>Ag-Jen-1_gag#LINE/Jockey 131-1300 [Anopheles gambiae]
MRGRGRHKGKRLRPIPRNRNRSYDDSRVRSDRSENSYALLSECEDTPAKLQDAVPKTTTTKNSTSATVTNKVPPIVVKSSSVHFVHKCVIEAGVVRYSTKQTNNGTNVQVTNTSDYRSVIKHLQNSNVAYHTYQLDEEKSTKIVLYGLHDLPTDEVMEILKEENLQPTSIKKLQIRQKRYDDQAVYLLHFPAGTISMNLLRTIPALDHCVVKWSYFSKRAGPMQCKRCQLYGHGANNCNRVARCNKCADDHNSSVCPLTAGSSSSDGKVPEHKLKCANCGGNHTATFSGCPKRPAANLPKEPKRTTSFNMEKNSFPALPQTKTIQGWKQLEQNPVKFVNFRQNETASGELFNSSEIIPIVGEVFQKLQKCKTKQDQITVIFEVVAKFCFP
>Ag-Jen-1_pol#LINE/Jockey 1303-3984 Previously represented by 55240203_Aga_pol, gi|55240203 [Anopheles gambiae]
MDCPDNFNISYWNANGIANKKMDLIYYLSRYDIDAVLIVETFLKPVHAFSIPNYIVYRVDRLSGPKGGVLIAIKCNFRHQLLKHNKLGIIETLSVKVLTRLGEFTLIAAYHPGKNTNLVTFQQDIKKLSARNDNYFICGDFNARHKSWNCVSTNAAGKLLFAEAQKGKFSIHFPDKPTYIPIDPTRNTSTLDLMLTKNLYTISKLRTITALTSDHLPVTFSIKHSSANFVSNKGIYNYKKADWNIFKNIINNSIDLTTIHPNDIINATQIDDMLHNLTSLITTAKQSAIPKAIPGKYNIIIPDYIIALIKLRNKYRKKWQRHRRNITFRNYYHALKTEIEQQMSLARNRAWSDTLKSINTQQNNTNNLFKFVKIVKNKQHTIQTLKLGNNIFLTATEKCNALKTHFENSHYLTYNTNSPMERKVTKNNRIFFARNQNHSLDPGYLVKPKLLMNIIKNLKNKKSAGCDEINNTEIKMLPKKAVLYLKIIFDSCLKLGYFPSQWKKAKIVAIPKPGKDHSNPGNYRPISLLSCIGKLFEKIIARNIRSHTDINNIIPQSQFGFQPEKSTTHQIHRLKNYIIENRNRKRSTGLVLLDTEKAFDSIWHDGLLYKLIQYNFPTYIIKIIQSFLSNRKSSVHIGHTKSNFFKPIAGVPQGSILSPILFNIFISDIPSTNNCTNYLYADDLAIAATARSPSSIIKALNGTLKAYAKFCNRWKLKTNANKSEAIFFTRNTSLRKLPSNEVSFMQGNITWKDQVKYLGVHLEKRMTFKTHIEKQLEKVDKLLKILYPFLNRKSKLNLQNKKLVYTAYIRPILTYAAPAWISCAYSHRKKLQVRQNKILKMIMNLPPWHNTNDLHKRSNLVKMEEFIGNLNVNYANKCRQSSISIINQLVEQRI
>Ag-Jen-11_gag#LINE/Jockey 144-1277 [Anopheles gambiae]
MGCSKKGSAPRDAVPSCSYITIPNVTTSNDYDILSEDEEAPSIIAASATAKQQKSKIPPITVTGTQVGDVHKKITSVGVVNYTTNCTYKGIVVNTTTSKDFKLVVDVLKRHNNSFYTHQLPEEKTTKVVIFGLPEQDTEYIKTVLAEVNIAPCVIKKLELKKKRYDDQCMYLLHFPRGSITLSELKQVRAVDHHRVYFEYYSNKYGPMQCTNCQRYGHGSANCYLPPVCVKCADKHTSKTCPLSQTTTCPDGKIAPAKLKCANCSEHHTANFSGCPARLRLKKVTPTPSRSREFTYNETSFPRLPNTPTRSTPSNHVNFSDLFHQQQTRSNNNLDFDLNEIGQIVKDVFSNLSKCSSKQDLIAVIVQISAKYCFPNLK
>Ag-Jen-11_pol#LINE/Jockey 1276-3883 via tfasty with Jockey_Ele2_pol, 1 frameshift and 2 stopcodons. [Anopheles gambiae]
NVLLKIIHWNANGISSKKDEFFNYLLKKDIHIAAISETFLKNGTRFSHPNYHTYRLDRTQGEKGGVALVISKAINHEVNSDYKLKVLEAIGITIKTQNSKVTIISIYNPGSNNDHSSFRKDITKLSKISNHFIICGDFNARHRFWNCSKANQMGKTLFEENQRGKFSIVHPEEHTHYPNDPNRRPSTIDLLLTNKPEKICNILTIQKFTSDHLPVYFEYNIGLIQNKHISGIPNYSEANWTLFKEILNNRLNTNNLNLQNINTSNQIDQMIKYFSKLINYAHTKSVPFIIPDKFKITLPPNILQKIKHRNATRKQWQKDRNNTILKTIITHxKKEIILDIKNLRNQSWTDNLEKINNDPSKSRLWKFVRIIKGNSSFIPPxKANGKCYITNNEKCEILRDHFEKAYRTTFPNQSPIEHHIQETNSRFFSYHQAQPSNNFDPINFIKPKHIKNIIYKLKSKKSQGPDQINNHSLKQLPKKAIVYLAFILNACTKIHYFPLEWKIGKVIPIPKLKKDHKDPKSYRPISLLSCLGKIFEKILHKKIIKHLNQHTIIPSYQYGFQPGHSTTKQIDRLTTNIKTQRNIKKSTGFVMLDLEKAFDTVWHQGLLYKLISFNFPPNIIQLIQSFLSDRSCFVQITSSKSNDIHPPAGLPQGSVLSPVLFNIFTSDLPKTKSVKKYCFADDFAMSSSDSNPKSIIKNLNNGIKKYVTFCKTWKLKINEEKSEAIFFTRCTSAYKLPDRNLKISDWDIAWKDNVKYLGLFLDKRLTFRKHIEEKVISGSRLIKNLYSFINKNSKLNLKNKLLLYKTVIRPTILYSSKIWANCANVHINKLQVFQNKFLKRVLNLPPWHSTFDIHRITGFELVKNFVRNT
>Ag-Jock-1_gag#LINE/Jockey 113-1726 Poly-Q collapsed [Anopheles gambiae]
MSKWRTVPYHAGPAVRKKRVKRTPDLLAEMRRRKREEAQPESSTPASKKKGEIKITPATAGDVAVNAAMDGIDVPNTAEEENHRKEKIPPIVVSGLNEEEYGSLCDATQSGAIKASFSFASGNTCRINAASRDDHDKVKKLLENYTKEFYSHEFKADKPYQVVLKGLRFGSAEQVTVMLRDVKLQPSLVREVKIGEGRGLSSKLFVVSFPKGAISLEELQKITHINYTTVKWERFQPKHRDVLQCLNCLNFGHGAKHCAMSPRCAKCAGNHRSKQCTKEMGDVHTCANCMGDHSPYNRNCPSRKQYLQKRYSTQNAPRRLVPAPIPTRSSWAEPLPWVGQYRKDSVCTCHGCPHGHQQQNQQLQQxxQQSLQCKYQIASASCSYSIPRKTHRQPAQDKLDQLRSRLSDEEDEEIKSQFGDIVRLWVEFKRLSKQCPRDQILMKMVEFITANF
>Ag-Jock-1_pol#LINE/Jockey 1731-4373 [Anopheles gambiae]
MIKCATWNACSVLPKRLELIDFLNHEKIDLLAVTETHLKHNKTFFLPDHTVVRLDRPDQPKGGVLIAIRRTLAFKVLPLPNTHYIEAVGIEMLSAEGNFHFYAAYCPRQVSDTSGTSRLLKRDLQLLTRASRRFIVAGDLNARHQEWGNLRANRNGMILRELTQASACSVSFPFQPSFQNGNSYSTIDIFISNITDRLDVPSTITALSSDHLPVVMNIVCPGTHATRQQRNYREADWPRFERYITENISSAPPLLTIEDINTAITNVESCMKEAVDRFVPLIQVRHKVTELDADTKRLIASKNSLRRTYQRTRNRTYYSLYRQVAKIVDARMVEVRNRQFSDRLKTLPKHSRPFWRLTKVLKDKRRPIPVLIDGGIPAFTPREKAVKLSVNFAQAHRLSESMTSTYESRVADSISSLVSEPIEATNIERISSGELLGTIKYLVGYKAPGADGIFNIMLKHVGHSTVVLLTDVFNRCLELGYFPHLWKYAKVVPVLKPGKDPSLGSSYRPISLLGALSKLFERTIYTRMMAHCESNNVISEVQFGFRKHRSAAQQLQRVLDVVDSAKMRGKTTALALLDVEKAFDNVWHDGLIHKLRVQGFPLYIVRLVQSYLSGRSSAVYIGSEKSDPYENNAGVPQGSILGPLLYNCYTADVPTLGANASLALYADDTAILYSAKPLRFIRAGLQRGLDSYVNFLKEWKIVVNNTKTQALIFPYKVGMTASNIIAKVGSLKMENNIIPWASEARYLGVILDRRLTFKAHVGYIKTKTGHLFRMLYSLLKYNSGLSIENRLAIYGQIVLPSITYGSIAWGRCSRTNMQTIQVIQNRFLKTIMGLPNRYPTRALHSETGFVPIKDKLSEIIECLKRKCRDSEVDIIRNLFSS
>Ag-Jock-12#LINE/Jockey 1378-4026 Previously represented by 55235902_Aga_pol, gi|55235902|gb|EAL39164.1| [Anopheles gambiae]
MDAKLRIATWNACSVKAKKIPLLDFLQRRAIDVIMISETFLRPEDNLSFANYHLIRLDRTTGHPGRGGGVAIIIRRGIIFRQLPHYRTGIIEAIGIELQTSSGGIILVAAYCPVQCNRRNGLAAAFKRDLITITRSRSRFIVGGDLNARHPAWNNNRRNMNGVALFEHAQEGHYAVHFPDTPTFPRSGSTIDFFLSNVDLDKPTTLDELISDHFPIVTEVVCSISKAPLVFRKNYHNVEWVRFGRLVDNDVTDTNVRTVEDIDRAINEFDRAIKKAEAACVREYPVRGEYIELDPHTRALIVERNRLRRQYHNTGNVTCKSLAAAIARQISARLEVIRNENFGHSMARMDTRAPAFWKVTKVLRKRPKPIPPLVNTVDNLMAVTPEAKSNALAKQFASAHTLGANMPSPHEAEVAASLSLVDEAQSTVPPEGRVTTGRIRTALRRLKNMKAPGFDGVLNILLKHLQERAICLISNIFHRCLELGYFPDAWKCARVVPILKPGKDPTNPGSYRPISLLSSLGKLFERVILESLQETVETLDLIPEEQFGFRPGHSTTHQLFRLKQLFEKNKREARSTVVAMLDVEKAFDNVWHGGLIHKLVTFGIPMYLTKIISNYLQQRTFRVALGTTLSDVHLLPAGVPQGSLLGPLLYILYTADIPALPCDGKIFLFADDTAIAVKGRSLTEVSRRAQRCLDTYIQYASSWKTRVNVAKSQVMIVPHRRKRSLIPTMHSRVEVNGVMVEWTNKVKYLGLTLDSKMLSHGQVESILRQGQTLLMSLYPLISRRSRLSFVNKLAVFKQIIQPAVLYGCQVWGTCARVHRQKIQVMLNKMLRMIANCDRYTRNSDLYDICEVAPLDSYIQQQTTKLIEKCRDSTHRAVREIASI
>Ag-Jock-12_gag#LINE/Jockey 81-1385 [Anopheles gambiae]
MTKAKKKKREDTSPTVSDEGVNSAKHAPDKRAKIDGENTEEENEVEDNDGFVCVERRKGRTVSPPPSTAPSPAAGPHKLSQRLPPIVVSNPRFQELQKMLAHIAKVEYQIVGVGTKVWTRNEEDYKAILTFLQTADCEFYTHDLPRDRPFKVVVRGLPLSDEKDIRDALEAEKLQVDAVYRIKRRHEGNGDSGSCLYLVHLKKGTITLAALKEIRALLSIRVHWEAFRGGRRGVTQCLRCMGFGHGSRHCGMRQRCLNCAQNHNVADCTVVPPTVPKCANCDGNHKANDPECPQRARFQTIRQQATQRRPKTSAHGRNMVPPPPLSSYPPIGRNGSNAASAALAAPAAGVRAPVRDKTPAIVPRIPPGFQYSTALRMAGTDQTASQPNVSSEETALYDAATLMQIFSTMVERLNSCRSRREQVAVIGELIIRYGC
>Ag-Jock-13_gag#LINE/Jockey 289-1521 [Anopheles gambiae]
MEVENRSHDSVRVETTNTAVTPQTAASTSCPNTVIRSARIPPIVVNAPYHQLRAELAGIPGIVYQFAGAKVKLIISLVETRDRVLTLLKANRKEFFTHELRSEKPFKAVIRGLPDLPEEDIITALREQSIEPLVVHKISKKHYEGHSRQACLYLVHFTKGTITLAALKCIRTVDSIRVSWEAHRSGKGRIVQCHRCQAFGHGTRNCSMKKRCENCSEEHDSETCPTKAPEATKCANCNGSHRSTDPDCPSRHNYNLSRQKTSTITHRQPKPSGQPPPALTNANFPPLKHLGLPTPANAPNAYHNTAATTTAANTVPDVTTNPWLPRDRAVTESTTRATIMRTQPMNGSAMRAPSSHNFTAPADTLPGDEEGDFSIEEWVEILRIMTQRFRLCRNRYEKFAVIAELAIRYGC
>Ag-Jock-13_pol#LINE/Jockey 1514-4162 Previously represented by 55244781_Aga_pol, gi|55244781|gb|EAL41575.1 [Anopheles gambiae]
MDAKLRIVTWNARSIAAKKIPLMEFLLRQKVDVALVSETHLRPDINFSLKGYHFLRLDRQGTTTRGGGVAIIVRSGINFNQISHLNTTVIEALGIEVQLSIGLIKIIVAYCPMQCRRNDGKAAAFKNDLNIITRSHQRLIVGGDLNARHQAWNNLRRNTNGELLFRHSETGQFTVDFPDSPTYISAGGTFSTLDLFLTNVKISKPETLDELTSDHFPVVTEVDCSVSAGSIRRRKDYQNVNWQRFGRLVDNQIQSTEILSVPEVNIAIANLEIAVRSAEAACVKESMIRGEFSDMDSHTLALIKERNRLRRIFQHTGDITAKRLASTIAKQISARVEIIRNENFGRSIQRMDTRAPAFWKVSRILKQRPKPVPPLTSLGQIQVTPSEKSNALASQFANAHSDGVNRASRNEAKVATTLIRLEDSVFTVPLQEKVTITDVRIAIGRMKNMKAPGFDKIFNILIKHLQVKALCLITKVFNICFELGYFPSTWKCAKVVPILKPGKDPTLPTSYRPISLLPSLGKLFERIILDRLQNWVSELNLIRPEQFGFRQEHSTVHQLLRVKGCIEQNKTDSKSTAVALLDVEKAFDSVWHGGLLHKLVDFGLPVYLVKIISSYLKHRTFRVALHSALSDPNPVPAGVPQGSLLAPLLYILYTTDIPPLPCDGMLFLFADDTAIAVKGRNMIELKSRLQRCLDAFLRFAADWKIKINPSKTQAIVFPHRFKKTLTPPLSPGLLVNGTTVPWSPSVKYLGLTIDYKMIFRGHVESILERGHLLLKCLYPLISRRSRLSQLNKLAVYKQIILPVATYAAPVWSTCAETHLCRLQIMLNKLLRMITDTSRFTRNADLYTIAGVLPFKEEIQNQSEKLYNRCSVSTFPLINSLVQA
>Ag-Outcast-2_gag#LINE/Jockey 180-1445 [Anopheles gambiae]
MGVNDPGGGISLSNYYSGLGVDFQIGSAEEPRRKIKKGTQLRKISEVNESEERFLVIEAEKEDKDLSRANPFLVKKTIDVIVGENNANITRIRGGKLLVRVNSNKNAEKLKRLKKIGVGENETKIVVKEHPTLNTCKGVIRCPDIEFLTENEIMEGLTEDKVTEVVILKRKVNDKVVNTRTAVITFNTTKVPRKIDFGWYPLKVELYIPKPMRCGTCLKIGHTKKVCRREKVCAKCSENVHIEECKDLKCVSCGGDHHTLDKQCPVFVDEMEIQKIKTVNKITYGEARKIRRSQCPSIPRIFTNGQTYAQKTKITDNTENRSQTESNKKTYSKKIMIQNTTYTENNKNNENITENKTQENTQKENNTTEETVNTNNTEKPIHISETRISMNTPIDVAQLDLEQILIQNENGELIPLQHEKKQ
>Ag-Outcast-2_pol#LINE/Jockey 1570-4845 [Anopheles gambiae]
MNNLNILQANVQSFRKNKDEIEHIIKMEKINIACIQETWIKGKDNTKISGYNIITENREDGYGGSAIIIKKGMKFKQIKIGNRIKNIQIVAIEVIESSINIISIYMSPKTTIQEITEITQQINSIFNRRTVIMGDFNCHHTFWGDKKIDNKGTKLIEEFDYTNFLILKNEKNTCISEDPNKRDTSIDLTIITQDLFTRIEKNIIEQHIGSSKHRIIKACIKEKTKKQQRTQLNKGKVIKNLQNLKIDKISTINQITKKIETIIKQNITKVNYEPKSWWNKDIKTALKNRNTARKIYNNTKNIKDAIEYKKNEAVLKRKIKLSKKEFYKNSIEKINKNTTTKELWRLVKKLDGKEESIREENIIHNNEESARELLRKTYGKNEKIDIESINIPEFINENKLIEEEEWEKILNKKKKSAPGVDKITYEMLKNIHPGTSKIIRDEINEMWEKGKIKKELKRIKTIAIQKPNRDKTKVENYRFISLINTIMKVGNSAALKKINKHCTINKILPDRSFGFRKNKSTQMCANYLLNWIQKKKKQKRKIGIIFADLENAYNNVKLKILIEELVKTNMNSQIITWISQFLKNRTIELECNKKIIKKLVSDGLPQGDVMSPTLFNIYTRKIHSRINKIPKIRLIQYADDFAIVAADKNITLLNRTLQRGIIEFQRAISELKLEMNIKKTKMMIMGKTKQKVRLKINNIEIENVTAYKYLGITIDKQLNFKKHIEDIKNKARDRLYVFKVLCGKNRGLGTDKARNIYRATIRSILENASSITKNAKINTRKKISTIANTALRKISGCTKTTPINSLHAINAEIPLEIRCKYIANKEMTKAYTVSPIIREQLLNAVRNNTNKKTLTAQQQLFKENRSTIQNIAISKINDIEHNVSINTSIKNKIEEKKNRNNQVTKQIVLENINEQMKKRNNIFTDGSKQQEKNGIGIYIQKGQENWYHSIKANNDACIASIELTAIEIAMKMAEELKMERPTIYTDSLTSCDILKKAKDEEEIEETIYNIIEIGNRLKAKIWWIPAHVGIHGNECADRLAKEGTISNITTENKIRLVDAYERYKIEMIKKQKSGTRNNVKQRSKIPGISKKT
>Ag-Outcast-5_gag#LINE/Jockey 84-1037 [Anopheles gambiae]
MVTKDNTFKVDFNPMPQRPSPGYVIQFILEKIGVKKESLLKVQLMTTTAIAVVQIKESGEAIKIVDNHDGKHAVDYNGEKYFIPIKMEDNSTRVIIKNCTDQITNEEIKKAMMKFGEVKKVIDCVWEAPSPIAGIRDGNREVTIVIDTPIPSFVSIKGEKAHVQYNGQQRTCKYCELNMHLGMTCLQYKKTVTNNNEDEGTYANMVRKEGVKSSVQNRLQLERAVEGLNSGEKKQDNTLFKKPVNTIKERRVYESVEEAPSTSKANAQKRTGIVDSHTTTETEDESCMETETELKKLKGRPKKTKTLTQETKQDNNTN
>Ag-Outcast-5_pol#LINE/Jockey 1067-4708 [Anopheles gambiae]
MKIKMATINQKEISLLQTNITSLKRNKEELERMMNANKITIACITETWMKEEEVNKVNVSNYNLVTSNREDGYGGSAIYIRKNLAYKVIKHDIKDKEVQITEIKLTREKINIVSVYMSPQLKINRFRENVSKLLHNRSGNQKNIITGDLNCHHKIWGNPTNDSKGNFLLNELNDSNLCLLHNKEKTLIPTDRSKRETAVDLTIISEDIIDKCQRTVTEHHMGATNHKTIITKINEIIQEHTVTYTNKSKLFKEIEAIEVKETTTAYQVTKQIKKLIKSNKITSKKKPKIYWNIETEKAWKNKNELRKIFNNDKSTENKINMNKGIAEFRTKKRLNKIKKFEDKLEEVDFNRDPIKLYEFLQKMEGKFKSKTKAGNIIETDRKAAKIFLDKHFFKNKKGNKKPYRNFKPNKDIIDIHKWNRLLKKKKNTAPGHDGVSYEILKKINEKTRLVMVNEINEMWHKGIIKKHYKKMKIITFPKANQDKNDPLNYRGIALIPAIIKMANSAVLEEMNRYWNINKVIPGTTFGFIKNRSINNCTNYITNRIGQNKREGKATGIIFLDLTNAYDKVRTDILISKLEKYQTPKEIIRWIGAFLNNRTIELNTEDTIINKLISDGLPQGDVLSPSLFNIYTKDIHDKINRLGIQIIQYADDFAIITQSHSHHILQTKMQEIMKQFSDITDELKLEINTEKTKFMIFDTKNNNIKIRIKGKSIEKVNNYKYLGLWLDNKLTFKKQIDAMKTKTQKRLMTIKRICNYRNKLNPNKTIQIHRSFIRSNLEIGTASIRNAKKELLKQLDTIQNQSLRKVTGCTKTTPIPSLMAIAAEIPLGIRAKYLASNEQAKEIAHSKIHRNLLCDRNQNNNTRNNNNKHKTYYEKLYEENKNIINKMDNIVINDNTKRVSIISNAPDNITKNQHTNKQILKRHYQQEIEFFRKTNTIIYTDGSRTDDGCGIGIYIKPHNKNMYWSYKYKLKNNTPITSVELTAIDKALQIAVENNIINPILYTDSKAACSIIKREQYNNNIEESTYNIIKNSLKINAQIRWLPGHIDIEGNEKADALAKKGVTADNIMENKLRKSDIKLMFQQRMIFETQEWYTTEIQHKGKKFAEYQKEFKRDNWHKTININANEIKTMNRILTGHDFSKYWLKILKIEENDICDVCQVQETGKHQIFHCTKYNNERQKYPNIQEDLFRKHWKNNDGKIIKEIIRFIQDTKISL
>BMC1_gag#LINE/Jockey 274-1959 [Bombyx mori]
SPGVAPPGHVIVTMDSTIDLFAEFLRLRYPTLSVEFLEFKANHVANSEAVSVAPAAPVSPILASKAPASIAAVSVPALHSSAAHVASTRSSAASVAPAPSSAPERLSMASVATVNPAPSKTPACGSPAPSSSSDSESNMEVDPSPAPSTDGFTVVQKGKRRAAEARAPAAAKVSRATNASRLRPPTPVAPPARATPSPRPVEQKKIQTPPPVILQEKAAWERVSLALKAKNINFTNARNLANGIQIKVQTPDDHRALSSYLERISFHTYTLQEERELRAVIRGIPKELDAELVKADLLEQGLPVNSVHRMHTGRGREPYNMVLVALQPTPEGKQIFNIRTVCRLSGIAVEAPHKKGTPSQCHNCQLYGHSSRNCHARPRCVKCLGDHATALCTRDQKTATEPPSCVLCQTQGHPANYRGCPRAPKINRRVARQNRLRASHPDTKASAPSVSQAKPAFVPAPVPSGSAWAKPLPYTNTATTPSSAIRPAPAIRPSPANCPPTASDNLALAIDFFQSINFERVNALGDAIRAASTAQHFIAVVQEYADVYASLNTYVLPSLRR
>BMC1_pol#LINE/Jockey 1960-4845 [Bombyx mori]
SMAYKSRLKPLSVTIGFFNAYGLANQRDQVCDFLRDHQIDIFLVQETLLKPARRDPKIANYNMVRNDRRTARGGGTVIYYRRALHCIPLDPPALVNIEASVCRISLTGHAPIVIASVYLPPEKIVLSSDIEALLSMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIIAPLTPTHYPLNIAHRPDILDIALLKNVTLRLHSIEVVSELDSDHRPVVMKLGRSPDSVPVTRTVVDWHTLGISLAESDPPSLPFSPDSTPSPQDTAEAIDILTSHITSTLDRSSKQVVAEDFLHRFKLPDDIGELLRAKNASIRAYDRYPTVENRIRMRALQRGVKSRIAEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSIQSADPVHVELVDSEVERRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPIQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNNPTSYRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRANHSCVQQVHRLTEHILVGLNRPKPIYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGSVLSPLLFSLFINDIPRSPPTQLALFADDTTVYYSSRNKSLIASKLQSAALTLGQWFRKWRIDINPAKSTAVLFQRGNSPLISSRIRRRNITPPITLFGLPIPWARKVKYLGVTLDASMTFRPHIKTVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKHMKSVSERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDPITLALDTFSSNTRSRLRSPGNRTRRTRQRGRRAA
>BS2_gag#LINE/Jockey 304-1827 [Drosophila fruit fly genus]
FGAHFNMNTLNETAAADESLDTAFLSSPQCAAPQRFQKIKRKSRASPETERKKPKSTIGKQGENPSATEPRYGGNSNRFGLLAHLTADKQVGNEIGDLYDQPSTSHQAAIAAAKRDAASAGTTSSAKRAQSKPPPIVMEGVDDVYLMMQSIENIVDLEKIEARASMSGVLRLYAADANTFRTIVNWLEIEEYEFHCYQLKEDRPYRVCVKGLHHSTLHHQIKDELEKIGHKVLDIHTPLRRNEPGTSKASPVNMFFLNIAAAANNKEILAVKALCHMRVVIEPLRKRNAIVQCHRCQQIGHTAKYCRKAHICVKCAGEHPAKDCTRPRIELCTCYNCGGQHPANYKGCSKLQAFLQRSRPRSGVAGRTEVSDRPTPRGLAGGKEIPSSRGGISYADVARGSIHHKQPMSLTHQQQKQKQQPYDGSPSRQRSRSRTRASRGTLQRSTDASSSIEAILQTLNENINSLRSIQEKQMELMMMMMKQQQQQSHQQGQIINLLTALQARQAP
>BS2_pol#LINE/Jockey 1695-4553 (BS3_DM_pol only fsmall fragment and 88% similar) [Drosophila fruit fly genus]
FFALDSREANGINDDDDEATATTVTSAGADYQSAHCSPSASSAIMMPLRILVWNADGVSTKLPEVECFVRRHEIDVLLLSETHCKGAETPKLFGFVAYTANDPSGGNAKGGAAILIKNSLAHFPLTPIATAKVQLAPAVIETALGPISFGAVYCPPRFAWTTDEFKDILEEFQTKFIVAGDWNASHWLWGAGRSNQRGIALANLVLNSEVDSLATGGPTRYPYGCRGSPGYIDFALTKGVLGIHANISAVVELSSDHLPLVITLDAGAISYPKMERLITRRTNLEVFQSQLESTLPLNTAINSGQDVDDAIELLTNNIKSAARLATRSISRQPAADRIPIPREILLLIAEKRRLRTRWMRSRHPSDKTEWNRALSRLRCALVLHKAAWFDERLANTGVESEATHSLWKATRAIKRRCTRKAPLVDSNGTWCRTDLGQAEVFAAHLAERFQPFKLASLQQVEETQDQLNQALQMDMPITPFEPCEVAEVIVRQSNNKAPGHDVICNATLKALPRQAILYITLVFNAIVRLQYFPYQWKLGIISMIHKPGKPEREPASYRPISLLPSISKVFERLIAVRIVSIMEAQGITPEHQFGFRAGHCTVEQLHRVVEQILTAYDSKEYCNSLFLDIREAFDRVWHIGLQLKIKQTLPAPYFGLLKSYLEGRRFAVRFHSAISTEHNVAAGVPQGSVLGPLLYCLYSHDMPQPDVSLYGKSMLATFADDVCVTYRSRCEHDAADGIQDFAYRFSEWARRWNIGINSSKSNNVCFTLKRRTPPPVYIEEVPVPQPNAAKYLGVLLDRRLTFSKHVTDIRTRLRAKVAKHYWLLSSRSKLSLSNKLTIYKQILAPNWKYGCQIWGLACDSHIKRIQAIQNKVARLITGCEWFVRNTTLHRDLKLATVFDEINKHSSRYHDRLERHRNRLASALNRSRPPRRLNRRQPRDLITRSPLTRVRRS
>BS4_DM_pol#LINE/Jockey 25-726 [Drosophila fruit fly genus]
MVRYTDTYSAPCQMLAGVPQGSVLGPLLYSLYTADLPRPTYENAQYPSKAIIATYADDIAVLYRSKCRIEAANGLQGYLQTLSAWSRRWNMKVNPLKTFNPCFTLKRLATPAIQFEGVTLEQPSQAKYLGITLDKRLTFGPHIKTITKRCGQRMQHLRWLINKRSTMSLRAKRAVYVDCIAPTDLKDWDSARRFVNRPALPKPASNPRERFGSLRFVFICVVKMLIRMHGFNA
>BS_gag#LINE/Jockey 322-2253 [Drosophila fruit fly genus]
ILRIIIKTMDENNSDDTQLLNKQSNHRTMFSIAGKLPHEIRNECRSAIQRFTSSVTQSSSVTTTTVTFTSANNSTIYTMANAAISSPCLGTRSTHQESSTLINSGIVEDNLSDAARRLLNDQNQRAGKRKNGKPLSPISNPKRGSSSQVLHSPPTTSLKISTNNRFAILDTDISTNEESVEGMMIEGADIDSAHMDDSQLDGSNTGRNLQETHNTANQLNDHKKPPQIVVNIRNLNDLFELIKEKTSLDNVVVKANQGETVRIFPKDSDTYRKIVSHMDDIGIQFHTYQMLTDKPHRIVVRDLHHSTSNKDITADLKCLGYEVLHIHNPSSRTNKDEKLNIFFINIKPCAKINEIYHVKTLCRQKIRIERMRKSSEIAQCRRCQEYGHTAKYCRRHPNCARCGENHQTMQCTRPIDALPTCYHCSENHTASFKGCLKYQELLRRSMGPARNGNRLNKNTHHHSPRDRQELPALQPNYRKNNTQSTVQQLSTQPQLNFAQSQPSIGTGGNRAVSYATIVKGYPKIAPSKDGPAQRLRLNNPQTKQICSNTRSNTQQNNSSDVQVFLQQQQQQFLEWQQQIQQQQHQQFLMWLQQQQQEQLQYKSQTNQRLEKLEKMVLELANMLKEWAGSELNPQLFNNVSASL
>BS_pol#LINE/Jockey 2389-4971 [Drosophila fruit fly genus]
RYMDMRTISHIGHPLIIIVLAGVAVFVRTTLRHFPQRVIETRHIQLSSVKVATGLGDLQFSAIYCSPSTRIEERHFTDIIRACGQRYLVGGDWNARHWLWGDTCNSPRGRELAEALSVTGAKILATGSPTRYPYVPSHTPSCIDFAVYHGIPDHLATITQSWDLDSDHLPLIISIETDSTHVNPSPRLVTKHTDLLAFSRQLESLISLNTTLNSGEEIEMAVDNLTESIHRAAAVSTSPVPRIGTTYGIVLTREARELLTQKRRLRRRAIRSQDPWDRLLWNRAAKQLRNVLRELRSNFFEQKLASMDYTVDAGYSLWKCTKSLKRQPFRQVPIRCPGGELAKNEEEQANCFANHLETRFTHFQFATTEQYQETLDSLETPLQMSLPIKPIRVEEIVEAIKSLPLKKSPGIDNVCNATLKALPVRTILYLALIYNAILRVQFFPKQWKMAAILMIHKPGKPEESPESYRPISLLSSLSKLWERLIANRLNDIMTERRILPDHQFGFRQGHSTVEQVHRLTKHILQAFDDKEYCNAVFIDMQQAFDRVWHDGLISKVKKLFPAPYYGVLKSYLEDRRFMVRVRNSYSIPRVMRAGVPQGSVLGPLLYSVFTADLPCPNAYHMADPRKALLATYADDIALLYSSNCCNEAARGLQEYLTTLAAWCKRWNLKVNPQKTINPCFTLKTLSPVTAPIELEGVILDQPSQAKYLGITLDKRLTFGPHLKATTRRCYQRMQQLRWLLNRKSTMTLRAKRAVYVHCVAPIWLYGIQIWGIAAKSNYNRIQVLQNRAMRAITDCPYYVRGTTLHRDLNLHTVEEQISKHTSRYSDRLRRHHSILARRLLPARPLRRLKRKGFAKTLGQP
>DOC2_DM_gag#LINE/Jockey 284-1989 via tfasty with DOC3_DM_gag, 4 frameshifts and 3 stopcodons. [Drosophila fruit fly genus]
MIRNDTRVQRQREQDDRRLSLQRNNAYFSYVSATSADSERSITHNPTSLPLPTTQERARSCSPSLLSQNPQFPNTCEISLRLPTVTSTVTTTTTATAITTTTGTVSSARSIMSTQAFAPTKPAIKTKTQFNGSAALSASQNVNKNAGSTIQTGMDRYITIKRKLSPQNYKSQQTENKSNITRATMLTCSLTKRQKTPIDLRFxPAKSPKKVKPPPIYIREKSSSALVNKIATLIGENSFYVIPLRKGNINETKVQTETEDNHRIPTKFLDEAGKNFYTYxLKSARGLQVVLKGIEATVSTTEIVEALKEKNFSAKMVMNILNKNKEPQPMFKIELEPSARHxKKNEVHPIYKLQLLLHRRITVEEPHKRNRPVQCTNCQEYGHTKAYCTLKSICVVCSEAHSTANCHKNKEDISVKMCSNCGESHTANWRGCVVYKELKNRLNKRGESIRAQTTHIAHTPPQSGPSYTAPPPPPTTHRTSPSVSFASALKSGIKSVNPLTQKSTSTREEQKITTLNEQTQHISTGIETMMISLQQTLKEFMTFMQTTMQELMRNQNMLIQLLLSSKSI
>DOC2_DM_pol#LINE/Jockey 1992-4675 via tfasty with DOC_pol, 2 frameshifts [Drosophila fruit fly genus]
MSPLQISMWNANGVSRHKNELAQFLFEKNIDVMLLSETHLTDKHNFHIPGYLFYATNHPDGKAHGGTGILIRSRIKHHLYNRTEMDYLQSTSISMQSSSGPVTLAAVYCPPRFVVSEDQFSEFFNSLGERFIAAGDYNAKHTHWGSRLLTPKGKQLYNALIKPRNKLDHVTPGRPTYWPADPNKLPDLIDFAITRKIPRNNITAESLAELSSDHSPVLLTLWHRPHITERPYRLTGNRTNWTRYAKYVCTHMEPTQTVFTDEDVDRLVKSIEETLVAAAKASTPPDTHKMTNHSKTNREIEQLVLEKRRLRREWQNHRSPTAKEHLKIATRKLTRALKLEEANAQHLYIKQLSPTSKRNPLWKAHKSIQPPAETVVPLRGPSGSWIRSDEDRANAFADHLQKVFQPNPASNSFVLPVVTKSLPPINPVTFSQSEIASIIKDLKPKKSPGHDLVTPKMIIELPPCAVLTLCHLFNAITKLGYYPQRWKKAVIVMIPKPGKDKTQPSSYRPISLLTCLSKLFEKAFLKQLTPYLKRRNTIPSHQFGFRKNHGTIEQVNRITNEIRTAFEHREYCSAIFLDVAQAFDRVWLEGLMYKITKLLPQNTHKVFESYLFKRVFSTRCNSSTSHDRVINAGVPQGSVLGPVLYTLFTADMPTNYQLTTSTFADDTAILSRSRCPAKATEQLACHLKIVERWFADWRIKINETKSRHVTFTLNRQTCPPCTLNNTFIPQADVVTYLGVHLDRRLTWRRHIESKRTHMKLKAANLRWFINYNSPLSLEYKVLLYNTVLKPLWTYGCELWGNASKTNIEIIQRAQSTILRTITGAPWYLRSESIHRDLHINLVNEEIQMKKSKHQAKLAAHENPLAKSLTRVYSQSRLKRKDSPAQQRNPRAVSN
>DOC3_DM_gag#LINE/Jockey 173-1939 [Drosophila fruit fly genus]
SKTKKQIDNERIDRSKMSQRELRAQRQKEQDERRLSSQRNNAYFTVVSDARECQIIHPVNDLAPAECKRSRSCSPMLMTARNEPERTESVSLKLSPFQTVSSSLATSTAITISTATAPLATTTATTTATASTSTLCSIPTAVYNSAVPTTTKARALTPTLESGSGQEPKQNKKLCQTGLDRYIQIKRKRSPQHKQAGNQPKINRANASNDSSSNRFALLDDCEVQEQEQKKIKPPPIYIREKTSSALVNKLAAIIGENKFHVIPLTKGNIQETKVQTQDESSHRSVTKYLDEAGKSYYTYQLKSAKGLQVVIKGIESSVTSSEIIAALKEKNFNAKTVINILNRNKEPQPLFKVELEPSSQKNNKNEVHPIYKLQYLLHRRITVEEPHKRRQPVQCTNCQEYGHTKAYCTLKSICVVCSDAHSTVNCPKNKNDSSIKLCTNCGEKHTANWRGCIVYKELKSRLNKRVDSARDRITPTILKAMEPTTTNIPSSASHRTMPNSSFASVLKSGIQAPTAVTSSVQHKTHQINTNKQINTQNMQQQPIGVEAIMLSMQQSMKDFMTFMQETMQELMRNQNILIQMLVSSKIG
>DOC3_DM_pol#LINE/Jockey 1813-4608 [Drosophila fruit fly genus]
SDYAFDAAKYERLHDLHARNYARAYEEPKHPYSNARFFQNRIMTPLTIATWNANGVSRHKLELAQFLADRNIDVMLLSETHLTEKYNFQIPGYKFYFTNHPDGKAHGGTGILIRLRIKHHFLGNWQEDCLQCTSINLQCHNGALTLAAVYCPPRFTISEKKFTTLFDSFGERFVAAGDWNAKHMYWGSRIANPKGKQLYNAIIKPQHKLNYVSPGAPTYWPADPMKLPDLIDFAITKRISQSMITAEALPELSSDHCPVIFHLLHQLQHIERPCRLTSNRTNWARYKKYVCSHTGFSSPLETEQDIDQFAGDIESILVAAAKASTPQDNHVCSTKFNKTSRDIELLVLEKRRHRREWQEHRSPGAKSKLKAASRRLTKALKKEEADAQLRYIENLTPTGTKNSLWKDHRNLQAPTETVVPLRNSTGNWSRSDTDRARVFADHLKKVFQPNPATNSFTLPPLTASDLAPQDPVEFRPSEITKVIKEQLKTGKSPGYDLITPKMIIELPMCAVLRICLLFNAITKIGYFPQKWKKSIIIMIPKPGKDKTQPSSYRPISLLTCLSKLFEKVLLLRISPHLKTHNTLPSHQFGFRAKHGAIEQVNRITTEIRTAFEHREYCTALFLDVAQAFDRVWLDGLMFKIIKLLPQNIHKLLKSYLYKRVFAVRCSSSTSSDCTIEAGVPQGSVLGPILYTLYTADIPTNYQLTISTFADDTAILSRSRCPVKATMQLARHLTCVEHWLANWRIRVNEGKCKQVTFTLNKQTCPPLVMNHTRIPQADNVTYLGIHLDKRLTWRKHIEAKTTHLRLKARDLHWLINVRSPLSLEYKVLLYNSVLKPIWTYGSELWGNASRSNIDIVQRAQSRILRIITGAPWYLRNENIHRDLQIKLVIETIAEKKVKYNEKLASHPNPLARKLIRVCSQSRLHRNDQPAQR
>DOC4_DM_gag#LINE/Jockey 193-1746 [Drosophila fruit fly genus]
MPQPTTNYTQTPLTIVAKPPLLSLAAVTTSTVASLTTAIASTTTLTATVSSTQTIQSTTSRAFALQAKQLTATITDLRESKSNPSGRPNSVMQTGMDRYVFVKRKRSPQRTTGNRAKINCGSETKTTTTNNKNMFALLAENASEEANKTTDSVSQKPKPPPIYIQEITTNALANKIVQLIANNNFHVIPLRRGKIQETKLQVKTEDQFHAVSKFLNENGKKYYTYQLKSSKGLQVVLKGIEPDVTPNEVANALHEKGFNVKSVINILNKDKKPQPLFKVELDPTSQTLKRNEVHPIYNLQFLLHRKITVEEPHKRNGPVQCSNCQEYGHTKTYCTLPSVCVACGDLHESGTCPANKLDPNSKKCGNCGENHTANYRGCPVYKDLKSRMNKRIASARSTNNTQKIWYPKNVWYPPNRFLTFSSPTPNCHPLPPVSTIPGVSFASALKSGTEGPASTTEFSKAPQPRAVPDDLQQPTSAIEKIMLSFQATMTEFMSFMRTTMQDLTCALVQVLASQHSK
>DOC5_DM_gag#LINE/Jockey 211-1950 [Drosophila fruit fly genus]
MSASDAQNQKRELQAKQNKNNSYLSFTHISNYTNNYQSLHPQSDGRARSCSPALERPNNYSQHRSAECAPNSSARTPTTTSAIPINTHSTLPLTAVTLSALPLWTLPLSATSETNTTTVATIATTTTVFYVSMPICSSSANIKTPSSIPASTKINKTQSSLPNQQNLKLYRDNQSPNSSKDLLNNNKKQRNKAQTATQKTLKKYWLAEPHSSNRFELLAQDDEDENQTDNGTNATINTQMQIEHKSAKPPPIYVQNVENIYALTTALNSLEETRYELKALSSNEIKIQPLETTHYHNILRLLKDKSTKYYTFRPKDQRGFKVILRNVHHATDKDDIINELAQQGHEVINLHNIQRYDSKQPLPLFSIELKMKDNNKDIYKIEHLLHCKVIFEPPRPKRTLPQCTNCQKYGHTKNYCTKDPTCVKCAGKHSSSSCTINTRSDRTSIKCALCSENHTANYKGCMVYKALQIQKYPTLRKKEIPVTETTHQTTQHSTTNNVVSLKTPALSYAEVLNKNQVTSHQTNSTPQPTIVPDIQPASTQLSQTAQNDFDELKQMMKQLIAQMTNMMNIFTLLLFKLDK
>DOC5_DM_pol#LINE/Jockey 1925-4560 via tfasty with G2_DM_pol, 3 frameshifts and 1 stopcodon. [Drosophila fruit fly genus]
FYYSNLTNKHLTIAIWNANGLSRHLHELKTFLNEKQIEVMLISKTHLTEKTYYINIPNYNISSTYHPDGKAHGGTAVIIKKSIKCIELDGFKKDYIQATTKSTSDTTGPINISAVYCPPKFNNTKDQYLDFLKSLGNRYLAGGDYNAKHTTWGVRDLPLQRGRQLYEAIRNNNSRALSTGEPTYWPTDTNKLLDLIDFCITRNITCENLTIKSCLDLFPDHSPILLTLHGGLEENSNDSPLFKDKTNWNMFRDILEQNRNINISLKTNNALDSGVAYLNENIIDAATQSTPSIKMKxEKSGKSVHLWRIRQRTRHPEDKNKLNRATDELKRTLREDKDNRLQYYLSKLETTLSTNYSLWKATKKFTNSTIHKPPIKRNNNTWARSNKEKADTIYNDNAELPRQITNLNCAIKTITKAEIKSHIKQIKNKKAPGYDLIGGKILKELPDAIITYIRNLFNGILRLQYFPITWKVGQIKAIPKPNKNANTVSSYRPISLLPVLSKVFEKVLFEKLLFNRIEPILKQKNIIPPHQFGFRKQHSTVQQVHRVINKITDDFDKKKFCYAVYLDIAKAFDKVWHKGLLHKLRNILPYNLYTILQSYITDRYFYIKYDNECSDIMPVSAGVPQGSVLGPILYLIYTSDIPAPTTPGSMIATFADDTVLMSSSACEKTAASTLQQIMTQTVSWFERWGIEINKDKTQQVIYTKRQPKNFAIKINDNQILLHPYAKYLGLTIDSKLTWKQHILNKRNEIKNKFRQLNWLIGKHSKLELHNKIAIYKAIIKPIWTYGIELWGTASKSHLQLIQRTQSKMLRIITKAEWYIRNEDIHNDLNIETVNETIKKNSKKHTNQLLSHQNSNLRQIPMTELEPRRLKRRTPTELNY
>DOC6_DM_gag#LINE/Jockey 178-1347 [Drosophila fruit fly genus]
MRTKRNKPLVERQNERGSKQFTNYFRPLQTLDDDNDDKPIETDTLDEIIIKPPPITLIKQNTKFVHELMAKIKTDDYFIKTISIGIKIFLPNMDCFNAACNQLKEHNCEFYTYDTRSNKPYKAILSGLDKLPIETVKSMLQNLGLQCTEVKIVEKKTKSDHELLLYIVYFVNKSITVKELRKNFMYVNHTKVRWEYKVKLQNKITQCYNCQLFGHGSNNCSVKTSCAHCAGSHQTAVCMDVNNKKCANCKGDHPSTELTCPCRISYLNLLSKRSSQRIGRNNLEAHGMRNSKQHIAPSALFGNQPQISLPTQTKRVQQLNFGSYSNALTNIHTLPNPKANITNETNLFSCEEINSLLSELITRFNECSNKGEQFQVISQLAIKYVYTNK
>DOC6_DM_pol#LINE/Jockey 1328-3982 [Drosophila fruit fly genus]
MFTQTNNFIDNLNIMAWNARAVRNKRIELIKFLENNHIHIALINETWLTHSDRFNIPEYTIYRNDRKESRGGGVAIAVSNTLIHEQIPCIKSHVIENVGIQINTDSNSSLKIYSIYFAGNTSKCIPSSCDLSWDHNHLKSLYRSDLLKISQINGNFLICGDFNSRHRAWKCTRANGWGKILNELSDLGKFSILYPTQPTYIPHNHKAKASTLDLCLTNIPNQLANPAVMQELSSDHLPVVIKYSTNFMRNVKTYPILGRANWALFKRIINERLMVEEVVVNCSQISTLDIDNLIGSFTRVINYAFLKAVPHKPIHHSKLTLPVHITELFKTRNIIQRQWFRSRHPLLKSRCDHLNYIIRKELFIYNNAKWNNKLQKLDKCSKPFWNITKAIKKRKQIVPCLSKADEIYASGKEKANILADVFQLKHNLTHSYSNQNTIDQVKISLQSIAETPNNIAEICRVTYPEVFSIVKALHTRKSPGIDGIPNISLKNLPTSAINHIVNIANHCLQAGYFPRDWKIAKIVPILKPGKPPDNPESYRPISLLSGLSKILEKLIKLRLVKFLDIHNTLPTVQYGFRNGLNTILPTLKLRNYIKESIQSKQSVGLVTLDIEAAFDTVWHDGLLHKLKMIGTPIYLIKIVQNFLTHRYFSVNLNSSQSARRILNAGVPQGSVLGPTLFNIFTHDIPQATNCVLSLFADDAAVYSAGFSYSEINQSMQSYLNELDIYYKKWKIKINPNKTNAIFFTKRRKPRYLPDRQLRILDSPIQWVDNIRYLGIIFDKKLTFKYHINNTIMKVNKIICTLYPLINRKSKLSISNKIIIFKTIFNPILMYGSPVWGRCAQTHIKKLQICQNKLLKLIMNLPYYTNTKYLHIKAGVQKVQQKIQY
>DOC_gag#LINE/Jockey 168-1910 [Drosophila fruit fly genus]
LFHIVLVIVICGLRTMNQNDIRSQRQCEQDERRLSLQRNNAYFSFVSPQIGDRAPSPSTNSKLLPSANDRPRSCSPSLPASAHKSWSEETASPTPLLSQRQTTVPGNCNTAITSAVTSLATATTSTSSAAQLIIAVPAVNNSAALTVCNNNNARKEESKQKQKSISTVQTGMDRYIQIKRKLSPQNNKAGNQPKINRTNNGNENSAVNNSNRYAILADSATEQPNEKTVGEPKKTRPPPIFIREQSTNALVNKLVALIGDSKFHIIPLKKGNIHEIKLQIQTEADHRIVTKYLNDAGKNYYTYQLKSCKGLQVVLKGIEATVTPAEIIEALKAKNFSAKTAINILNKDKVPQPLFKIELEPELQALKKNEVHPIYNLQYLLHRRITVEEPHKRINPVQCTNCQEYGHTKAYCTLKSVCVVCSEPHTTANCPKNKDDKSVKKCSNCGEKHTANYRGCVVYKELKSRLNKRIATAHTYNKVNFYSPQPIFQPPLTVPSTTPTISFASALKSGLEVPAPPTRTAHSEHTPTNIQQTQQSGIEAMMLSLQQSMKDFMTFMQNTLQELMKNQNILIQLLVSSKSP
>DOC_pol#LINE/Jockey 1682-4576 [Drosophila fruit fly genus]
RPKIRTRSARPTDKNCSFRTYTDKHPTNTTKWHRSYDAIPTAKHERLHDVHAKYFARAHEKPKYPDSTSCIFKIPIMASLRISLWNANGVSRHTQELTQFIYEKNIDVMLLSETHLTNKNNFHIPGYLFYGTNHPDGKAHGGTGILIRNRIKHHHLNNFDKNYLQSTSIALQLNNGSTTLAAVYCPPRFPISEDQFMEFFNTLGDRFIAAGDYNAKHTHWGSRLVSPKGKQLYNALTKPENKLDYVSPGKPTYWPADPRKIPDLIDFAITKHVPRNMVTAEALADLSSDHSPVFLNMLTRPHIVDPPYRLTNFRTNWPRYQKYVCSHIELTTALSTKEDIDKSTETLENILVSAAKASTPPVTYAKPNYIKTNREIERLVLDKRRLRRDWQSNRSPITKHMLKIATRRLTNALKQEEKNSQRSYIEQLSPTSTKYPLWRAHRNLKTPIAPIMPLRSPSGTWFRSDEERASAFADHLQNVFRPNPSTNTFILPPLIAANLDPQEPFEFRPCELAKVIKEQLNPRKSPGYDLITPRMLIELPKCAILHICLLFNAIAKLGYFPQKWKKSTIVMIPKPGKDKTQPSSYRPISLLTCLSKLFEKMLLLRISPHLRINNTLPTHQFGFREKHGTIEQVNRITSEIRTAFEHREYCTAIFLDVAQAFDRVWLDGLLFKIIKLLPQNTHKLLKSYLYNRVFAIRCDTSTSRDCAIEAGVPQGSVLGPILYTLYTADFPIDYNLTTSTFADDTAILSRSKCPIKATALLSRHLTSVERWLADWRISINVQKCKQVTFTLNKQTCPPLVLNNICIPQADEVTYLGVHLDRRLTWRKHIEAKSKHLKLKARNLHWLINARSPLSLEFKALLYNSVLKPIWTYGSELWGNASRSNIDIIQRAQSRILRIITGAPWYLRNENIHRDLKIKLVIEVIAEKKTKYNEKLTTHTNPLARKLIRVCSQSRLHRNDLPAQQ
>FW2_DM_gag#LINE/Jockey 71-1252 [Drosophila fruit fly genus]
MGNKSKINCDITRQKTNMPNNDNRFAILADLDDLPNSDKDIKKTPKPPPIYIREKSSSALVNKKMDLIEKDSFHIIPLTKGNIHETKVQVKTEVNFRALTKYLNDAKKNFYTYQPKSSKGLQSSIKGLRPEITPEEISGAQIEQGFKPKSVINIFNKDKKPQPLFKVELEPDSWALKKNESHPIYKLQYLLHRRISVEEPHKRKGPVQCANCQEYGHTKTYCTLRTVCVACGELHSSVNCPSNKADPGMKKCSNCGGNHTANYRGCPVYKDLKNRLHQKVTMMRGQSTPSTIIPSKHTPDVHLNSLTNRNVTFASALKSGLASTNPTTPFPLAEQNKVNADQPTGQPQGNIETMIFNLQQSMTEFMTFMRTTMENLMRNQDLLIQMLVSQQSK
>FW2_DM_pol#LINE/Jockey 1256-3835 [Drosophila fruit fly genus]
MAPLRITLWNANGVSRHKLEMAQFLQDKHIDVMLLSETHLTNKYKFQINGYIFYGTNHPDGKAHGGTGVLIRNRIKHTFRNDFGTNYLQATSLNIQLGNGQITLAAVYWPPRFTISENQFLDFFNTLGDRFIAAGDYNAKHTHWGSRLVTAKGKLLYKTIIKVSNKLSCASPGTPTYWPTDPRKIPDLIDFAVTRNISHNHINAESLPDLSSLAGLINYLQYADLKNSPCRVTSNRTNWLKYKKFVSSHIQCLNPRKKQTVQYMQRKPNVQIEQLVLKKRRLRREWQSYRSPFAKQGLNNATHTIRKEVINEQECAQRPYIAQLSPFSTKYPLWGLHPSVSPPVESVVPIRNSAGEWVRSDKHRASTFAEHLQNVFQPKPATNNFVLQEQTVVSQTTQNTIEFRPTEIAKIIKELKPNKSPGSDLINPKMIIELPFCAVQTICQLFNAINRIGHFPSLWKKSIIIMIPKPGKDHTVPSSYRPVSLLPCMSKLFEKCLLTFIIPYLRTFNKIPEHQFGFQEKHGTIEZVNRITTEIRTAFEKREYCTAIFLDVAQAFDRVWLDGLMHKIMSTLPECTHKLLKSYLHNRVFSVRCGTVTSEDHIIEAGVPQGSVLGPTLYLLYTADIPTSRQLTISTFADDTAILSRSKCPRQATAQLALYLAHIEKWLSDWRIKVNEQKCKHVTFTLNRQDCPSLILNNTVIPKSNEVTYLGIHLDRRLTWRRHIEAKRTHLKLKANSLHWLLSIRSPLRLEYKVLLYNSVLKPTWTYGSQLWGNASNSSVEIIQRAQSKILRTITGAPWYVRSDNLHRDLFILPVRDEIAKQMEKYRNKLRAHPNRLARDLTRLSSRTRLRRNDMPTQR
>FW_DM_gag#LINE/Jockey 154-1866 [Drosophila fruit fly genus]
IVILNNKTMSQNDTRAQRQREHDERRLSIQRNNAYFSYVSPTIPNADIERSITHSPGNLLLPTNQERARSCSPALLAPTEAPLPPTTTAGEGPAARSASSSAAPAHGLTKSAKAKPLAINGTAALPAKQNENVNKKAGSTWQTGMDRYITIKRKLSPENSDLGNKPKNTRDNSTLIKNVAPANTNRFALLVDTAEDVPLGSVDIEPKKTKPPPIYIREKSTSRLVNTLIGLIGKDSFHIIPLVRGTINEIKLQTKTEDDYRKVTNYFTAQKIGFYTYQLKSSKGLQVVLKGIESDVTPEEITEALKEKGFYAKNVFNIKNRNRQPQPLFKIELEPENKPPRKNEVHPIYKLQLLLHRRITVEEPHKRNAPVQCTNCQEYGHTRSYCTLRPVCVVCGDLHDSKQCQINKENACEKKCNNCGGNHTANYRGCPIYKELKIRLHKRMNTARAHQGSATLIPSETNPEVIFSKAASFAPWPTFNTNKTTFANVLKSGMTPPTQNSRTPHEVHTKLDTQQNYHPAAQQETKTEAMMQALQQSMMEFMTFMKTTIQDMMRNQNLLIQMLVAQQSNK
>FW_DM_pol#LINE/Jockey 1863-4547 [Drosophila fruit fly genus]
IMATLRIATWNANGVSQRKLELAQFLHEKHIDVMLLSETHLTSKYNFQIRDYHFYGTNHPDGKAHGGTAILIRNRMKHHFYKEFAENHLQATSINIQLDDNTLLTLAAVYCPPRFTVLEAQFLDFFQALGPHFIAAGDYNAKHTHWGSRLVNPKGKQLYKTIIKATNKLDHVSPGSPTYWPSDLNKLPDLIDFAVTKNISRSLVKAECLPDLSSDHSPVLIHLRRYAENVKPPTRLTSSKTNWLRYKKYISSHIELSPKLNTESDIESCTCALQSILTAAALTATPKITNNTINSKKTNVQIEQLVHVKRRLRREWQSSRSPTAKQKLKVATRKLANALKQEEDDDQRRYIEQLTPTGTKQKSLWRAHSTLRPPTETVLPIRNSSGGWARSDEDRANTFAAHLQNVFTPNQATSTFALPSYPVNRHQQHTPIVFRPKEITKIIKDNLSPKKSPGYDLITPEMIIQLPHSAVRYITKLFNAITKLGYFPQRWKMMKIIMIPKPGKNHTVASSYRPISLLSCISKLFEKCLLIRLNQHLIYHNIIPAHQFGFRESHGTIEQVNRITTEIRTAFEYREYCTAVFLDVSQAFDKVWLDGLMFKIKTSLPESTHKLLKSYLYDRKFAVRCNTATSTVHTIEAGVPQGSVLGPTLYLIYTADIPTNSRLTVSTFADDTAILSRSRSPIQATAQLALYLIDIEKWLSDWRIKVNEQKCKHVTFTLNRQDCPPLLLNSIPLPKADEVTYLGVHLDRRLTWRRHIEAKKTQLKLKANNLHWLINSGSPLSLDHKVLLYNSILKPIWTYGSQLWGNASNSNIDIIQRAQSKILRTITGAPWYVRSENIQRDLNIPSVTNAITELKEKYHSKLHTHPNHLARGLIQLSSRSRLRRKDLPTQRINY
>G2_DM_pol#LINE/Jockey 159-2960 [Drosophila fruit fly genus]
HGTNVCSLRRNGRKDDGEDVLANDAACCFHPQRKSMQSLKIVIWNANGLQRSRAEVEHLLKTDAIDVLLVSETHFCPRSHFSISGYDVIPANHPSGRARGGAAMLIRSGIQYTELPAFQEEWAQCALARISSLHGDITVGAVYFPPRHSITETHLQDFFESFGPRFIAAGDFNAKHSWWGSRSINPKGRTLHRFLQSRRLDCHSSGEPTHWPSNPSLLPDLLDFAISKGIGQDRLTCSNYNKLISDHSAIKMLLNIPVLKKELPRRLTGKHTDASKFTLWMLSSLHPDPPLSTPSNIDAAIKTLTDEMYNAAEFANPPPSTSPRTPGRDLHLWSPEIAAFVAEKRRLRRIWFFSRNPRDKAALNRAIKELKDKLCTLRQDSFDRFLEELEPGDPQHNLWQVTRHIRRPAKKASPVRKADGSWCRSEAERAEAFADLQNAFTPFDRCTGEERAATTRFLESPCPPSLPIEPVTPEEVAQEIASLKASKSPGLDRIDATSLKMLPPPCSQLLANIYNRCFSLGYFPRSWKRAEVILILKPGKPEANLASYRPISLLTILSKILERVFLRRVMPVLDEAGLIPDHQFGFRRSHGTPEQCHRLVARILDAFENKRYCSAVFLDVKQAFDRVWHPGLLYKLKSHLPSSHYALLKSYTEGREFQVRCGSSTSTTRPIRAGVPQGSVLGPILYTLFTADLPIIPSRYLTAATYADDTAFLATATNPQLASAIIQRQLDALDPWLKRWNIMINADKSSHTTFSLRRGECPPVSLDGDTIPTSSTPKYLGLTLDRRLTWGPHINNKRIQANIRLKQLHWLIGKKSKLREKLKILVYKTILKPIWTYGIQLWGTACTSHRRKIQRFQNRCLRIVSNAHPYHENSAIHEELGIPWVDDEIYRHSVRYASRLENHHNHLAVNLLDHSQSLRRLQRTHPLDLTQHT
>G3_DM_gag#LINE/Jockey 778-1818 [Drosophila fruit fly genus]
LSTMDLPLLAMITTLLCLLKRTCTNPTKDDEIKSDTPSSEKPPPIFISDVNDINGWLRYLNLHMDSTEFTYKSQRDGQTRIMVKNVEEFRELVKKLNTDQVKYHTFQLKQVRAFRVLAKNIHHSTDIESIKKSIEMQGHVVRGIHNIKSRITKEPLRMFFIDLEPHNNNSEIYNVKHINNAIITIEPPKKVSDMVKCYRSQEFGHIKSYCNKKFRCVKCAENHSSISCPKEKTEPATCANCHENHAASYKGCRIYQEISKKRSNVPNSRPALTSLYDIPRATSFIPTKPNHEKSYANQANYAQVVRDETEQEKSTLDRIEKLLMKQSELTSNLLNMIMMLVNKLCK
>G3_DM_pol#LINE/Jockey 1982-4504 [Drosophila fruit fly genus]
MLIIHLGGSAVIVKNTFQYKQIDNICSNIMQVASIEIKCMHSNISIAAVYIPPRHSWKLDEINSLFRGLGRHFIAGGDYNAKHSWWGSRLVNPKGAELYKCITNNKYSTLSTGKPTYWPTDLSKIPDLLDFIVFSGLPASNFQIEENFDLSSDHTPIIVTYGTTVCFKQKPYRIINAKTNLGAFKNWLEERICLNVSLKSGEEIESAIEALTNSIHAAGYMFTPPPNESTSRQTFLPLELRAQIAEKKKLRKIWQTTRSPIDKRKFNKAVNNLNSRLWEIKNEATAEYLRNLDPNTSDLYYSLWKATKYLKRPTRRDTTIVNSTRHRCTSNAEKTEAFAEHLSSVIQPNLENDPETVAEVHNFLEAPCQMSLPINQTTISKVEEEIKELNRKKYPGYDKVCAITIRNLPPKCIRLLTHIYNAMLRLEYFPSQWKCAEIIMIAKPNKPENCTSSYRPISLLGTFSKVFERILLRRMLPALDELNIISEHQFGFRRGHGTIEQCHRITHAIVNALENKNYCTGVFLDVKQAFDTVWHEGLLYKIKKWLPAPYFQIISSYLKNRIFYVREHDEFSSIYTAEAGVPQGSALGPVLYTTSTADLPTTNAVEIATYADDTAIIATSNDPRVASNLIQEELGLIEAWLKKWRIAVNAQKSVQVTFSLRPGSCPPVTLNGSTIPVSETVKYLGVHLDRRLTWKQHIKAKQTQLKKKPKKMYWLLGPRSQLSLENKLRLYKAVLKPVWTYAMQLWGTSRNSNIEILQRYQSMTLRTITGAPWYMTNHDIHKDMELPLVKDEIKSNAERYISKLHDHDNVLALGLLDNTSNRRRLKRFHVLDLPYRFTNR
>G4_DM_pol#LINE/Jockey 1075-3725 via tfasty with G2_DM_pol, 1 frameshift and 1 stopcodon [Drosophila fruit fly genus]
MQVNLNLGIWNGNGLSSHVNEISLLKTNEIDIMLISETHFTSKPYIMVVGYDIIRADHRSFxLDLLIRRLKLDGLKFQIMDSIRENAMQAATVTIKCMHADVSVTAIYLPPRFALKEADFKNFFQKLGPQFILRGDFNDKHPWWGSRLTNPKGSELYKCIVNNSITTFSTGKPTYWPTNSRKIPNLKDFVAYFGIPESHMRIMESFDLSSDHSLIIVTYSTVAHILTKPYKVISANTDINAFKSYLETDKIDHAVELLTEQDKVSYICTKLPARNSQSNQLYLSAEIRQQIQHKRNLRKRWQETLYPADKRSYNKAASDLKKLLSTLRNESLAEYLRNLDPHSCNHEHNLWRATKYLKRPAKRNTVVRNCNGEWCRSDDEQAKAFAQHLHSVFQPNDIDNPQTEREVDNFLESPCQMSLPIRKISINEVSSEIKWLNSKKAPGSDKIDGITLKILPPKCVRFLTFIFNAMLRVDHFPSQWKCAEIIMILKPNKAENEVTSYRPISLLSIFSKVFEKILLKRMLPILDEFAIIPEHQFGFRRGHGTPEQCHRIINEILSAFESKKYCTATFLDVQQAFDRVWHDGLLYKIKKWLPAPYFLLLKSYLTNRHFYVQQKNEYSPLHFIKAGVPQGSVLGPVLYTLYTADMPVTNTCTVATYADDTAILATSSSKEEASQLLQAELRLIESWFLLWKIKVNALKSAQITFALRRGDCPEVSFNGSAIPQSNCIKYLGLHLDRRLTWKNHIKAKRQQLNQKSLKMTWLLGRKSATTLENKVRLYKAILKPVWTYGIQLWGTASNSNIEILQRYQSKILRQIVNAPFYISNASIHKDLGIPYVKEEIAKHSKKYIDRLRTHENNLALSLVNNNNNVRRLKRFHVLDLPDRY
>G5A_DM_pol#LINE/Jockey 16-2730 [Drosophila fruit fly genus]
MGPLRIPTWNSIGASLKTNEFLALIELHDIDILLLSEVHFSSRSNFRVNGFTLHTANHPDDSQHGGAAILVGSNISHQPFATLSQNHIQAVVIQLTASRGNFNVASVYCPPTLRWTDAIVGQFITQFGTKFLAAGDWNAKHRWWGNYRMRTRGRVLYSALAEEGIDIVATGEATCYPYRATASPSAIDFGISKGFRQQQIKVQLLSSDHLPLLFELDEDAQSFRSVTKMLSPQANIRIFKEHIEATVELNIPIDTCSRLEAYVDYFTPAIIEAARQATPTPHQARLTAIRRPPILSIEARDLLSHKRRLRRRYIATGDPSIYQQYSSTTNRLRRLLANNRKANLDTLLEGAGPDSNSGFSIWKLTRGIKRQPLFQSPIQDRGGLWLKTDDEKASAFASHLSSTFMPFNLTDDTNREAIANFLDTPTAPTRPIRHTSPQEVMMQLKALQPKKNPGYDGIDNRTAKFLPRKGVLALVKIFNVMLRLGHFPRQWKRARIVMIPKPGKSPTQIDSYRPISLLPTFSKVFERILLTRLMELPQVTEHIPQHQFGFRKSHGCPEQIHRLVKHITHGFEHKLYTVGVFLDVKQAFDKVWHEGLLYKMKDLLPAAHYAILSSFIADRTFDVAVRDSRSSMEHIHAGVPQGSVLGPFLYTLYTADMPTPVNNTDEASPAQLILATYADDTAMLASHSSLQFASNAVQEWLHAIERWTAKWNIAINCTKSACVTFTLRPQTCLGLLFDGNTIDYVSSHCYLGVHLDRTLSWKAHITAVRAKSSWKLKKLDWLFHSSKLHMATKALLIKAILGPTLTYAIQVWGTASKTQLNRLRVIQSRAARHASGLPWYVSNRVIERDLKVVPLGDQINFHSSRYADRLSAHPNTLANDLVDPISLRRLKRIHPHELLTRKIV
>G5_DM_gag#LINE/Jockey 393-1979 [Drosophila fruit fly genus]
AFFFLKMDNGPQQKSIDYESMMLIAGAGPKEIREQMKKSWKSETPASATTGISNTYCSSTFTLTSTSSTISSAYIFTSSLSGNICSTAASTIHKSASVSSIAKPQLATGWHDVSFKSRNGGIKKRAGAVFSPKMAKKVATDMPAKISANCFQVLSDDEDMVVGEASSSDDDEPCSSNTALKRAARKAGPKQQLKGAHQTVPAAPKSSRHSKVPRMMFPNVVNFTAFRSELDALVGDSYTIKVLNSGDCAVQCNSPDSYRLVARHFLDKGSLFHHHQLPEDRPYKIVMRNIHHGVPSEDIIATLQNEGHNVVRIYTPRNKATSLPLNMRFIDLKKAENNNQIKGISVVCRHRVIWEKPRKQSEPIQCHRCQGYGHTKAYCSRHYICRECGENHPTAECKLEQDEARFCFHCGGPHAANFKGCKKYLLEASNRKNQRKVNEPSGSGPARGPHQPCPPAHMSGKPSFANFVRGSQPVAKPAVIVPHASANLESKLEQLFIRLDRMMSLVETLMQLLLQTRTFPSAAQNGSS
>G5_DM_pol#LINE/Jockey 1921-4686 [Drosophila fruit fly genus]
CNCSCKLAPSLLLLKMGPLKVAAWNANGASSKTNEILAFIELHEIDILLLSETHFVSRSTFRVPGFTLHTANHPDDSKRGGAAILIRSLISHLPFSTLSENHIQTAVIQLTASRGTFNIASVYCPPNLRWTEADVELIIAQFGTKFLAAGDWNAKHRWWGNYRMCTRGRVLFSALAGEGIDIVATGEATCYPFRASATPSAIDFGISKGFRQQEINVQLLTELSSDHLPLLFELDEDAQLFKGVTKMLSPTANTVAFKEHIEATVDLNIPIDTCNSLEAYVDYLAATIAEAARRATPPPHQARHTTARRAPILSLEARELLSHKRRLRRRYIATGDPSIKQLYSSTTNKLHRLLARTRRENLDTLLEGTGPDNNSHFSLWRLTRGIKRQPLFQSPVQSHSGLWLKTDDEKARAFASHLTSTFMPFNLTDDSNRVAIINFLDTPTAPARPIRHTTPQEVIMQLKALQIKKTPGYDGIDNRAAKSLPRKGVLALVKIFNAMLRLGHFPRQWKRARIIMIPKAGKPPTKIDAYRPISLLSTFFKIFERILLARLMELPQVVNHIPRHQFGFRKSHGCPEQIHRLVNQVTHGFEHKLYTVGVFLDVKQAFDRVWHEGLLYKMKALLPAPYYAILRSFISHRTFDVAVRDARSSLEEIHAGVPQGSVLGPFLYTLYTADLPSPANNTEVSPDQLLLATYADDTAMLASHPVLQTASNAVQEWLHAVEKWTAKWNVAINSSKSACVTFTLRPGTCTDLTFDGNPINNVTSHCYLGVHLDRRLTWRAHITSVKFKSLAKLKKLDWLFHSSKLQMSSKALLIKAILAPTWSYAIQVWGTAAKSQLNRLRVVQSRAARHASGLPWYVTNQVIERDLKVTPLGDQINFHSSRYADRLMVHPNRLANILANPISLRRLKRVHPTDLPTRRIV
>G6_DM_gag#LINE/Jockey 127-1614 [Drosophila fruit fly genus]
LAQPTYLTVVRTNTIAHPSVRVISAKNPVLEAAVYLQSSSHVLPGSPAYGAQLPPPPHSLSTLEKMDWQAPPRTHKLGTTPRKKALRTRKSSSSSEGSTSHTEPDEIKRKPAKKAQGEELEEKPSTSAALRKKLANNAFALLSSEEDEDDQESSDDEPGPKDDSKPKTPEKPKPTPKTIKPPPIFIPDVTNISALVKMITTLVGPKNNFTYKTVNGNNVRVMMPDKESYTALRLQLVAQNKRHRTFQPKDERAYKVVIKGLHHSTDREEIIEDLRRQGHAVRDLHNPIGRRTKEPLGIFFANLEPSSNNKDVYQVKRICRSVVTIEPPQKFNDVPQCFRCQGFGHTQRYCFLEYRCVKCGGPHESRACEKREDDKACCFHCQADHPASFKGCPAYKRAKALAAPKTRPVANANKAPPVASPNVTSGRSYRDALNGVHAAPQNPTTPVQTQTETPHSGQIEAMFARMEGMMERMMERMFTQMTQLVATILNSKSCN
>G_DM_gag#LINE/Jockey 129-1538 via tfasty with G6_DM_gag, 2 frameshifts [Drosophila fruit fly genus]
LVQPANLTVSLPLPTHSCVRVIGINSYIRLKLLRTTQQQPRAEAGTPTNGSYLPSSPPSLLRDNMDWQAPPRPTKLTKVPRKKALKEAPGEGESSCSSDSSSSESEPGEVKRKAASRDAKEAADNVPNTSAALRKKLENNSFALLSSTEDEDDDDDNTDNEQQTPVGESAPKTMKKPNPTPKTIKPPPIYIPDVTNISALVRMITTLVGAHKEFSYKTERNNNVRVMMPDKESYSAFRQQLVTQNKRHRTFQPVRDLHNPIGKKSKEPLGIFFVNLEPASNNTDIYKLKRICRSVVTVEPPLKFNDVPQCFRCQGFGHTQRYCFLEFRCVKCGGLHDSRACEKKEDEKACCLHCQADHPASFKGCPAYKKAKAQQAPKPKARSMESNNKPSFELPNITNGMSYRDALSGTRKSQASTPPPTPPTPPEAPQPNHMEAMFTRFESLVERMMEKMFAQVTQLVASILNSKSCK
>HET-A_DV_gag#LINE/Jockey 1273-3807 via tfasty with BS_gag, 2 frameshifts and 3 stopcodons [Drosophila virilis]
MSDPNTTPTTHLSAEPXISPGLLSNLSGLLLSPILTMPASMNGLLSISVDSLAPATALSPQALISTASETPAQKGQEQKRAAXKETENTVSETTTTSSITAKTTATNTNIESIHIPADAQAQLAHFKRLIAQLELDTTPPNSQAADNFTSYYDEHSSSDSIVNIMDSDDAPCTPKPAQPLPMSTFRHHTPTSVVATKTSTQVISPTYAAILAGNAANQKPKNSTCISSSSDSSSNNAPGIGGPGGKITTTATTGASHYKLLHPTGKTANQIRKNNARKSNRQNSAISRLSQQDAQRRNQFANRFTLLSESDFEAPDTHQSQQLPVENxQFGRAVQAALSPVKQSTTTTTTPTNTRAALTSIHSATAATAVNATPSNSPDCQQQQQAGAINVSAPAAKHYKPPQICIQHYNQPDQNGIDSVIAKLNGQNPPIIDYGLKLGGPGILRILPKTLETYSKIINVLNTDNSINYNTYQRREERSFRVVVRGIHASTSTDAIRNELTCMGYTIRNVYCPKYKNRSGPGTYQPNIFFVELAPDPTKNRSIFEIRNLCKYVVRFEWPKIDGKNLPQCHRCQRFNHTARYCRHPARCVKCGNEHLTQTCVKPANVPATCANCGSDHTANYKGCPLYLDLLQAKLLSLPNSKNISPNVRQPQPKLQRRQKQPQRQQSAQQQQQQRKNQRQCSLSxSTTKITRNQNKMVDRxERNQLALQLDSPKIYHTITNNNINTANNANNSNPPTVSSSNSLDPRSRWARIQSLQQQQQQQRQLERPDSVQTREQIISRQRQMLENCPSGSHLRHNPSHNNNPRQCKLTLSSSHHNNSNFTTPSSNDCETIYCFKWPTSSKSS
>HeT-A_DV_pol#LINE/Jockey gi|34558711|gb|AAQ75088.1| pol protein [Drosophila virilis]
MIGLRIGIWHANGLSNKTDELEQFIIRHNVDLMLISETRFNFNSRVQIPGYSIITANSPQTHLCIGGAAILISNHIEYQALPGISLPQLQCAIVRLRTDLGGANIASCYWPPNHAVLADDYVCLFNQLGENFLIGGDWNAKHRLWGNMRRCPRGSILANILMDSNKYNVLTTAEPTHFPSNSNRPSVLDFGIYAGISSHRLAISRVTELHSDHLPLLVQLKITINGQSLWNNPNLIHRSRPRRRNRHRLLTERSNLEIFHQKLESSINLNIEIDCINDIDDMLENFMSKLHIAAEASNSRSAMASIIPPHQNSSNNTLNNENNNNVNLDLSSPQPLPLSAFIRTDEHRELMRLKRRLRKRWARTRQLDHWLEWQRVGRQLANQLEQQRRDYVDYVLSNADPQKKGAFNLWHATKYLKRQPHAQPSVRNLNGHWCQSAEEQAEAFADELQARFTPFNLAPSGQCERVKRTLNQQVNLYDNTLNAINPQYPILSSHIRHVTLCELNTYIGHLQMRKAPGLDQIDNYLIRSLPQKARLFLLLLFNGMLRLRYFPSAWKCAAVRMILKSGNRSAANLNSYRPISLLSTISKLFEKVIYERLNDELQSPLESESELECSRVIPNHQFGFRSGHGTIQQVHRIVEHINNSFERGHCTSGAFLDLQQAFDRVWHDGLLFKLRTHTSEPLYQLLKSFLSNRSFCVLSTNPTTNGNRGADACHSTLRPMVAGVPQGSVLAPLLFNIFVSDMPCIATHIQQVFQPPPGQTNTSIIGLTATYADDTAFLCSAMNAVVATTILQGHMHRFVKWANNWNIQINDNKSVHIIFTLRRQIANAGSLTTQLTINNNIIPAKSYVKYLGLNLDKKLNWARHARLQHKLCAKNCSNTNGYYLPANPDYH
>Hebe_Av_gag#LINE/Jockey 220-1674 [Adineta vaga]
MPSKRGRGGGGQQRRYHSVDNQQRATTTQRKQGPQSSQSIQSPQRTTQDGKAGPYALKSSQPTFSIAPLILEGVNLNKLQLNDILKQHLAEVNIHDIQLGRNGIFTLYARDVKSFNNILNDFSSILSSNGQPSATVYVPRSIQRIKDTEKIAFVKRVDLELPNDRITEALKNVGLEVTEVIRLTSKDGKTPTRTVKISFSDATNRNIFVQTGLQVDCMHFTAEPATQNSKPVQCYICLKYNHVAKYCKTKQQVCSRCGENHSNDKCTVTDDAVKCYNCKGNHIATSKECSHYREQEKKMQNMVNQYATTSKQVTQAPSIYSTHDFPPLSQFNQTQKQLLTDNLFDDIINALTSKMETIIEKTTNRLFKALHQKIKKIEKSFGLLDRNNEEKYILTDSDSDSNEQSQAVKIIKPKPKKQQSEADKSSTTENVTSNKPTMPSTPTTSKDAQNTKEGSNTNKRALSSNNSPDASINDKKTLKTSSNDA
>Hebe_Av_pol#LINE/Jockey 1670-4357 [Adineta vaga]
MLSLCHININSITKHKDELLARFSKYDIISVNETNLKSERPFTLFGYNIFRNDRIGQAGGGVLLAVKQHIKCQEVLNKTTCKNEAIAVEIRTKSFKSILISSIYVPPKAKIDINLFHELYNVNNNCIIMGDLNATLYNMGSQQANARGRQLQELFKDGLIDCVDDDSPTFEKNDYEVKLDWILASQPLLSFISNVETHPTIGALNGHKPLTFDIPCGAEPKPASSRILFNFKAAKWSKFRCKLDQQLMLWKNDHHLDSTADIEEYTSFITTSILEATKEAVPQTKQMIRTYTPSEVSISLIKQKHQAYRKWKKTGNNLDKHLYYNSKVLLTNSLRNDRRNNFNKLMSSLCHKKMYSDKVWLTVRKFHNKRIKQTYANIMKYNNTTATSDKEKADLFADYFENEVYSHTADTLPLHDQVTRQANKVKSKTITSSNTPKWKQIKEKEVKNHIRQLRNSSTGPDNIHNRCLKNHSKLLVQHLTNLFNAILKQGYIPAMWKKANIILLLKPKKDKQQPSSYRPISLLSCLGKLLEKIIKQRLMLELERRNILPQHQAGFRPGKSTIYNIVRLERYAAGQLRRPRRRRHSAVILFDIKAAFDSVWHDGLIYKLNDLRLPCFIINYLISFLSNRTAAIEIENILSRPFNLKSGTPQGSPLSPLLYIMYTADSMNGIPTHTEHGLFADDTALWTSGNTLTNLNTRLQQSIDAFESWCKSWKLKLQPTKTELIHFSIHPRKHYKNPVKVKVEDTIIKPLDSTRYLGVIIDKRLKWRAHLEHIESKIAPRIGLLRYLSRTAYEPNNKTMINIFKSIVRTVIIYGHPILLTADQKVWDRLQIMQNKAIRAALGLPIYTSVKYIHKISNIPKIKDYAIGLLKHTLQKATTNNDITLKNHLQCILDKI
>Helena_Ds_gag#LINE/Jockey 294-2033 [Drosophila simulans]
MDTNNETSNSQLRNKPIDYEEMRQVAGKSPLDIRMELLNQRSSCTESVNLSTITTTITFTSATCNTTSTTTAAISRPSSREKAATRLSDAQKLLTKERKRKTNLTPNHSSKRAVRDAKLEPYPAINSNSNSNNRFAMLDMELDETSDGIETPQVCHDVASTSCASAAPNIPNDDCVPNVTSNSPQQYTDKQNSYKQSKPPQIVLSLTNLNDLYELITEVTSLDNLTVKVNQGETVRILPKDSDTYRAIVNLFDNSGIEFHTYQMKEEKPHRIVVKGLHHSTLTYEIIDNFKTYGFDVLQVHNPRSRRNREEKLNIFFINIKTCAKINDIYDINTICRQKVRIERMRKSSEIAQCIRCQEFGHTAKYCRRHPNCARCGENHLTKLCVLPNDQQPICIHCGGNHTASYKGCQFYQEYLRRSMGTVKKQQPKQAKFDKSATNQQQPQQKQQHAIASTPKDHTGSLSYADIARNGNTTAQPRLHNVQLKGTNIKQQHPLDVQSILAQQQEQFMKWQQQLQQQQQQQFLSWLQQQQQEQQQQNKLNSQRLERLENIVFEMANMLKQRTGDTSAPQLHSNALPSQ
>Helena_Ds_pol#LINE/Jockey 2030-4753 [Drosophila simulans]
MNPLKILIWNVNGISGKAREVELFAHNNGIDILLLNEIRLNRGNTVKIYGYSFYPAYKPSSHNHGMGGAAVLVRSSLRHFPQRVIETRTIQMSSVKVSTGLGDMEFSAIYCPPRNRIEERHFSDILVSCGQRYFVGGDWNARHWLWGDTYNSPRGRELAEAISARGAYILATGSPTRYPHVPSHRPTCIDFAVYHGINLDRTSISENWDLDSDHVALVATLQTEGAYVRPCSRLINSRTDLLVFRQHLENSLQLNTVLSSKEDIENAVDSLTQNIHRAASASTPSEPEIRPRSYGIVLTREARELIRTKRRLRRRAIRTQDPWDRILWNRAAKQLKVVLRELRSDFFEQKLSSMDYTVDANYSLWKCTKALKRQPLRWVPVRCPGGEFAKTEVEQANAFGFHLEDRFTPYDFATTEQIRETHQYLQMPLQMSWPIKPIRIEEILEIIKLLPKHKAPGIDRICHATLKVLPIKAIIYIALIFNAILRIQVFPRQWKMAAILMIHKPGKPEDDPESYRPISLLPSLSKLWERLIANRINDIIRQGNILPDHQFGFRKGHGTIEQVHRLVKHILQAFDDCEYSNAVFIDMQQAFDKVWHVGLLCKIKTLLPAPYFCILKSYLEERQFKITVRNSYSSIYPMRAGVPQGSVLGPLLYSLYTADIPCPSFEHMAAPNRTLIATYADDIAVVYNSRDSREAANGLQEYINALAAWCKRWNLKINPLKTTNPCFTLKTLIPNTPPIRLEGVTLNQPLQATYLGITLDKRLTFGPHLKNTVKKCGHRSQQLRWLMNRRSTLSMRCKRAVYAHCIVPIWLYGIQIWGIAAKSNYNRIQVMQNRALRQITNCPWYVRNSTLHKDLNIHTVESQIGRHTSRYSDRLLSHSSLLARRLIPARPLRRLKRQGFAKTIGQQ
>I-1_DR_gag#LINE/Jockey 3-1256 [Danio rerio]
MAASSGGGAVQAVGNDWIENGQEWGDGNDGSGNEVEEMEGSESCEPWTNCRGKKRKKRKNKLDSDEEMRSKVKEGNEEYNVFVRLVQEGATFEDWSPIQLTKALYKEIGEVRCAKKLRNGCLLVSCKDEAQQKKAIKVNKINGKKVKCSEVYDRKLIRGVITGIPVSESLNNVIEGITNAKIKEAKRLKTRWNGAICDSLSIMLTFDETKLPDKVFIGYMSYEVKMYIPPPVRCYKCQKYGHIAAICKGKMRCSKCSGEHEYGQCDKEAKLKCCNCGGEHSSAYRGCEVNKRMQEIQRIKVTQGISYAEATKKVRPTREQMGQMPTMREERKDMIKCKKCDKIKEETLIVDKNEFVLFMAEVINCSAQTTSRTERIKIIVKAAEKYMGIKGIPWESVRNTLNEEVQQQQSQAWGGVA
>I-1_DR_pol#LINE/Jockey 1238-4990 [Danio rerio]
MGWSCIMVIFILQWNARSLISNGQEFKKYIDDLNEKPDIVCVQESWLISRLEFNIKGYNAVRMDRKIGKGGGIITFIKKGIQYREVKRGNELEYVIVEVWSSEGNIKIINFYNPCRLLEREQLEEIWEGINGKIIWCGDFNAHSTLWGNRNDNNGRVIEEFIEEEELVCINDGTGTRLNTARGTESAIDITIVTKDIADRCEWEVLRGNTVGSDHYPIKTQVGIECAKEIEVREEKWILERADWDKFREISEDLLQKIEDNLDVENMCKRISGGIIEAAKMAIPKSKPKIINKIVPWWTKECRKAIKERNKAFKKMKTTHNFQNLMKYKQAQAIVRKTVKKSKKEYWRQFCESIGRTTPVERVWGMIKKMKGNGKEYGYPMLMDGQRVIINNKEKAEIIARTLIKVHSTDNLSQEEKRGRVETYERYQFDLGKDDGDQVLNINFSGTELSRALKKLGKTAPGRDGICYTMLENLTDKGKEVLLKLYNKIWEVGVIPKEWKKAVIIPIKKPGKDPKQPTSYRPIALTSHIGKTMERMINDRLVYWVETKRKIGNYQSGFRKGRGTMDPILRLEDDIKKAQVNRESVIAVFLDIEKAYDMLWRDGVLIKLNQIGVKGRILRWVKEFLSERSITVKINGTFSECYSVENGTPQGSIISPFLFSIMFDGIFKEIENNTGVALFADDGAIWKRGRNITFIMKKMQQILNTVQEWTVKWGFRISQEKTKAMLFTKKKIREDLKLKLGGKDLENVESFKYLGVWFDRRLTWNTHISKMVDKCKRVLNVMRCLCGVDWGASRVALKSIYTGLIRSVIDYGCMVYGSAANTTLKQLDVIQNQALRVCCGAMKTTPVAALQVEMGEMPLHLRRDQLEVVYWANLKGHNENHIAQTVLMQCQEREKRGIKGYGWTIQQKINDMEIDTIKISPTIVFPVVPTWLLDDLEVDFEIMKEKQENEIDSKQVENYIREKYSETTEIYTDASRIGQRVGVSFSIPKLKIEVTKRINNNLAVYTAELVAIWLALKWVEDNKPIKAVIASDSSSALISIKNVVSESRQDIIYEIVQLGNNIIKSGVIISLLWVPAHIGVSGNEMADKLAKQAAQQTMIDMDIKYSKSEIKSIVKTKILGKWQHIWNNGSTGRQYYTIQNIVGKGRETRKNKKEEDKFSRMRFNHTSLNSTLHMINKHADGMCECNNQETVEHVLMHCPIYQTERNILFTQLQEKQVEPNIKNILKLSTGDVCFRYVYNYLKDTGLINRI
>I-2_BF_gag#LINE/Jockey 175-1521  [Branchiostoma floridae]
MPSTRAQSKQQSTTKQPAEKQEDKSNKELNQENNKSEKQHKRKPQETENTQLQAKSVLQQSPSETKKRKQKTTNKKDNPTNNRKQSQQRNKSPSKRQTLSEEEELCICGNDHPEGGCWICCDQCNTWWHGTCAKLSPSTVAYFVKSGEEYYCAYCTIQNINKSTKHIRKKDPSHEDVNTPKQTIRSREGPATDTKHKPNKEETNEDKKEEIIIIDNISNPSSYKNSAKILAEISRHKPGITHSIDLAYSLPRGGIAIHCRESKAASEILKPWPEGAFGNAHEQLKVHKVHNIYGRRAVLKNVPTNTNEAAIEQNIYEQTRVKVKAHRFHYHDTGKPLKVVRIEAEEGQLSELFTQNIRIENALVKVEAYKTKRHTPIRCYQCHKLGHIAKECKESATCAKCGGKKDHTKSCRPNCVNCKGNHPANDSRCKAFISLQQKLVDRDRRQHQ
>I-2_BF_pol#LINE/Jockey 1715-5587 (with correction from Outcast-2 duplicate)  [Branchiostoma floridae]
MKIAQVNIRSINTSATLVEKMCEKKNIDVLCLSEVWHKAKQPTCLKTWTWTHKNRTDKRGGGTAIVTRENIKVMEEPIQQTTHADIVALNIYTKALNFVLVSAYVPPEDRLALQELLSIVNELNQKKKHLVLCGDLNTKHIAWGNKKNNKLGQMLYEAMETGDFQIMNNNTPTRDDSIIDLTIVNKNTTKHMQSWRVEPEVQLRTDHNLITMSIGSKEETQKQQKWNLRNVDWKEWQDKTDTVFQQWVEETDWATEKANSRSEEVYNSFKENLLTCAEEVITKKTITQHSKGYWNKALDVQMQITKTALRKFKRRRDKTNLTKYLHEKEILTNMEEEARNTYWNEQLKDMDPRKPQKFWKAIKNQLGRSSRPTIQPIRQKDGTIATTDQQIAHAVTTEYAPGGVEITGELATWKQNITQAVEISIKHEKQRLQDDHTYEEDTHEDTLNLDLTLEEVKAAIRKMDASSSPSPTEGILPVMIKYGGDGLTIALQHMLNLVWETGQIPKAMKQDNKILIKKPGKDDYNKVRSYRPITLSSVVGKLMERIVDNRLTWWAEANHILSPYQEAYRKHRTATHGVLRLVQHIEEAWKNNETTVAVFADYEGCFDRIWQEGLLYKLITKGVKGRTLCYLESFLRGRETRFKVNTITTEPEISKVGIPQGAVLSTTLCNIYTADAYQQTGLDNFQYADDGAAWCSGADVKEVSKQVETSIDHVISTWCPLWNMRIEESKTKAMVFSPPHIDQPTADSLEVNNKNIDIIPEVRLVGITLDEKLNFQSHICNTQTKAYKALKAISKVTNAKKNPNQEAHLQLYRAMIRPILEYGTECTLRAGQKHDVAYAPIQRKALLAATGCKIRTSTDALEVLTGIMPIDIHLTCRQAQAYLRMATKHTGNPIYDKIAQERSEEKIGTTLHLLETRFKEMKGEIEVSTVDKECYYDSRLPPFSVGRITGSFLPTTTNPANKEEAKEKVKQILHEMKKTPTTVVFTDGSSLGNPGPTGCAAVIYEQWGVTEPYTVRKPVAAKSNNYEGELQGIYLALNTLHRSQSKNRRILILCDCKAALENVSSLQQAEAYNDLVNAARQRLFEIQQKGHNIQIEWCPGHMGVEGNELADMQAKLAAEEAKHTENNTTWTKQQAMKHIEEQAVKRWQRRRENQTTSSHMQKANTSLKKKCSTWESRTTQISINQLVSGHTELNAYKNWIDPTETPNCGTCGTRENIDHYMYECPKYENTRQHLMKEIDNIYEDYGIPQQERTMDVVSLAGMRSDLTNEANKRMYLAFTKYIEDTRRFAEQV
>Ingi-1_BF_pol#LINE/Jockey 1-3126  [Branchiostoma floridae]
MYGGHKRSVLVAVPVRLVLRILLPHHYNCQSYNHNFASTIMATNDRPVDEAQRHVHPHGSFSGPALCIISFNTEGLTGAKQDLLAELCVKNNCDILCLQETHRGPTRTRPRINGMTLIVERPHDQYGSAIFVRHGLNVDKFTLTDRNNIEVLSTDLMGVNLSSVYKPPAETFNLPSVVTDGLLNIVIGDFNSHSTTWGYRQTNEDGDLVENWADTNRMSLIHDPKLPASFNSSRWKRGYNPDLVFASETIASQCEKEVLQPVPHSQHRPIALRVNAVIVPRTVPFRRRFNLKKANWEKFAEDLDLYIQDLPASTEHYDTFVKMIKKSSRQNIPRGCRTKYIPGLNEDSKALYEEYVNCFESDPFSAETLECGELLTRTITESRQRRWREFVESTDLTHSSRKAWKNIRILGNDFTRAQPVPQVTADQVAHQLLVNSHGNPNHHPPRAKLPQVDAASSEGTSPFTRPFSLDELCNAIKDMKNNKAAGLDDILCEQIKHFGPLALQWLLNMFNHSLSTNRIPKIWRKSRVIALLKPGKDPSIPKNYRPISLLCHTYKLFERLLLNRIAPFVDELLIPEQAGFRPGKSCTGQLLNLTQYIEDGYEKGLITGTVFVDLSAAYDTVNHRILTKKLFEITKDVRLTELIQNLLSNRRFFVDLNGNRSRWRRQKNGLPQGSVLAPLLFNIYTNDQPGHPDTRRFLFADDLSIGAQGRTFKEVENTLTDALVGLTPYYEANHLRANPDKTQVSVFHLKNREADRQLKVCWQGKWLTSTNKPVYLGTTLDRTLSYKTHILNTRMKVDARNNILKKLTNTKWGADASTVRGTALGLCFSTAEYAAPVWCRSAHTAKLDTALNSACRAVSGCLRATRVDDLYLLCGIAPPHIRRAVAAQREKLKQETDPHHVLHLHTPVPKRLKSRRSFMHSVEALSSSAESQRMAMWSHHLQTAPHRLNLAPKESLPPGAEEAWPTWSCLNRLRTGTGRCKTLMAKWGLSPDGQTACDCGQEQTMKHLLVCPLLSEPCTKEDLEALTPRGRECVEYWSGTV
>Ingi-1_Rpro_pol#LINE/Jockey 113-3844 [Rhodnius prolixus]
MRPRNARSTNGLSQGPDNTLLKVFFWNAGGLTPDKFSELKAFIAKEDIDIFGIVEAGASTENPQYFQVPGYQTYVLKRARQVASGIIFAAKTSLTVDFIVKKEMVENDRLEAVQADVWAGKLHRRFYVLYNPPSNRPDLSWLEAQWGPRDILYGDINAPSVRWGYMQTSPVGRIFEDFIDANPVVAIRNLECSPTFISYSGNTSSPDVILAHAALDGEIEHSLEHAPGDFGHKILKLVITRDSSCPKEPRFTRWNLRKAKWDLFSKLSDQEIKEDLIQGSVDAAFNNICTAVLKCATQAIPRGCVKRYSPFWNEDLQRLKEERDIARTAYEQSRLQEDKIRLKEAGALLRKEIINAKRNSYNQFLENLDFRKDGVQAHRFLSKISKNMEPAKRQPFVASSGKTLTSNEDIAKLFCSYYAKISSWQPEQKNRKLNLKLPPTCLNEKENSLFHTPFCWAELEIALDTMPIKKCAGPDNIPPEFIKHLGGSARSTLLRFMNKVWEQGIPSVWRKADILPIPKKGKPTNRPENCRPIALTSMFSKLYERLLLSRLQEFLEERQLISDKQAGFRKHRNTVEQVAYLSQEIKNGFHRKQSTVAVFVDLKAAFDKVWRERLIQKIRDIGVAGNMYKSIFSFLAQRYIRVKYNGSFSPFKQTRKGVPQGAVLSPTLFSLMINDVVAAVEAIPGVRVLLYADDLVIWATSSHVDAIESYLNKAMETLYQWTTNNKLEVNTSKTEYQVFTLSTNKKQVHIKFNNQILPQTDSATYLGIKMDGRLGWKKHIDKLVQQGEGRLGLLKRLAGIKWGANQDLMTLTYKTYIRPTIEYGNEVLLTASDNSLKALDLLQNKALRLITGAAKSTPIAAMEIQTGIEPLQIRREISAINLFERVKRLKIKHWDLQQSSAQRLKTQKPLAVKVSEVIATRGLDLGRKQPFERSCVQYGHLAEGKLNLLQPLLKDKTSEQEMRALALETIHSRYPARDWLHIYTDGSARAATHNAGAGVYCREFTLAEPVGRMCTNFDGEVKAISMALAKLIEDQKDNPQIVLFIDSQAAILAISSRHYTDHSEVGIARSHIAFLIERGTRVVLQWVPSHCGLTGNEQADELARRRAEMQQPDTPLTFSAVKNVVKSSYNEEIKRTQQHQAEGKRWRTLLENPVSVTAARKEAVACFRMTTGHDYLQKHLHRIGVVDSPMCPLCLQEEKMDSQHLPVCHALIDVVANDSTNPHTHENKAIMTKLYWAARSRMD
>Ingi-1_SPur_pol#LINE/Jockey 373-3341 via tfasty with Ingi-1_BF_pol, 1 frameshift. [Strongylocentrotus purpuratus]
MAPTDCRRKHASSSGRKVTVMSINTEGFSSAKQQLIGKLCKENDCVALCLQETHRGHQHIRPRIPGMKLAIERPHEKYGSAIFVRKDVIIDQTSLTEEDNIEVLAVNMGKLTVTSVYKPPGSTFAFTEPQSFDYDLVNVIIGDFNSHSTSWGYEETNEDGDLAEAWAEAHHLDLIHDAKLPHSFNSCRWKKGYNPDLSFTSERISCQTKKRVLEPIPHSQHRPIIVDITAAVVPQRVPLRRRFNFRKADWEKFAIDLDEALSDLDPVPANYDQFVRTVQEISRKHIPRGCRENYIPGISAESALMYKEYIKLYEEDPFSEETLSAGELLMAAISEERRKSWQDLIEGVDMTHNSKRAWSTIKKISNDPKKSTPHSNVTADQVAHQLLLNGKSAHKKRHKRNPWPQVDTESTWYFNNLELQTAIDSLKNGKAAGLDDIRTEQIKHFGHNTREWLLSLFDNCVTLSQLPKIWRKARVIAILKPGKDPNEAKSYRPISLLCHLFKLFERLILNRLGPVTEQHLIPEQAGFRPGRSCTGQVLNLTQHIEDGFEKNEPTGVVFVDLTAAYDTVNHRILLDKLYTMTKDSHLTKLIQMLLENRRFYVELNGKRSRWRKQRNGLPQGSVLAPVLFNVYTNDQPVYPGTRSFIYADDLGIAAQSSHIDKIEATLSSALDNLTDYYNNNHLKANPAKTQVSLFHLRNHNAGRKLSLKWNDVSLKHCDHPVYLGITLDRTLSYKQHVQKVKGKVGTRNNLLRKLANSSWGANSSTLRSTALALCYSAAEYACPVWERSSHAKKVDAALNDSCRCITGCLKPTNVDSLHTLAGIAPSDVRRTVASRTERSRQVEDTRHPLYSHQPAPTRLKSRKSFLHTVQPLSQPPHSTRVILWEEKRCENHHHEKLPIPTKEQLPPGHNDDWKTWKSLNRLRTGVGRCKYNMHKWGYTDDTDTDCECGTSVQSMSHLLRCPLLDDQCCLEDLVAANEKALQCAKAWQSI
>Ingi-2_BF_pol#LINE/Jockey 1-2847 fragment [Branchiostoma floridae]
ADILCIQETHKEAVPYKIPGMDLAIYHPSPVHGSAVYVRDKSIIVKTKDLSAHGIEILMVETLDTKVFSVYKPPPTAFVWPQECDLTGKACLVLGDFNSHSTRWGYQDTNPDGEAVEEWASNNDLSLLHKAKDKPSFISGRWRRGYNPDLVFVPSRLTQNFEKTVENPIPRSQHRPITVNTKPVIRPVKPRNPIPRFNFRKANWESFTMELDDRIQTLEPHPNIYDQFQSLVWEISKRHIPRGCRKSYIPCLSEDSKDLYEEYVKAYEVDPFAEETIAMGESVLASVSEERRERWKELITNVDMTQNSKKAWSTIKKLNSDKNPQASLAAVTPNEVATQLLLNGKPLNKERGHRKKMKEEMENVMLESEDEFADFTISELEDAIKLLKPGKAAGLDGITTEVIRNFGPKAKAWLLQMFNTCATTLSIPKVWRKAKVVALLKPNKDPSNAKSYRPVSLLCILFKLYERMILARIGPIIDELLSPDQAGFRPGRSCCGQVLNITQHIEDGFETGKVTGAVFVDLTAAYDTVNHRLLLLKLAKMVRNTSTVRIIQSLLENRRFFVEMDGKRSRWRSQTNGLPQGSVLAPTLFNVYTNDLPQFNNIRRFIYADDLGLTTQHKSFEVIERRLTAALNSLSVYYKNNFLNANPSKTQVCAFHLNNHQAKRQLNIVWNGKKLANEKFPVYLGVTMDRTLSYREHVRKLKEKVASRNNLLNNLTTLNWGADANTLRSTALALCYSTAEYCSPAWERSCHASKVDAELNTSCRIITGALRPTPLPALYRLAGIAPPPIRREALSRTQKFVQEQDSRHPLHYYHDVRRRLKSRKSFMTIQSLNPKEAAKYRVDRWKASDTLLPNEALQTPCESLPHGTHLPRREWVDLNRARSGVGRTRDNLLKWGRVNSAECRCGHPTQTMGHITKDCVLGPSISNQDLLEANEKAVAWLQYWHGTL
>Ingi-2_SPur_pol#LINE/Jockey 500-3505 [Strongylocentrotus purpuratus]
MATNDNDDQFVAEAQGRTHGSLSGPALSIISSNIEGLSGAKQELLADLCITTNCDILCLQETHRGPTRVRPRISGMTLIAERPHDQYGSAIFARNGLAVDKSYLSDVNNIEVLSIDLMGITVSSVYKPPQEPFDLPGRATDGRMNVVIGDFNSHSISWGYREMNEDGELVETWADANQLSLIHDAKLPASFNSARWRRGYNPDLIFTSTRIANQCEKVILDPIPHSQHRPIGLKVNAVITPRAVPFRRRFNLRKANWEKFAKDFDSYIQDLPATPQNYDTFVELMKKSSRRNIPRGCRTSYIQGLTDHSKVMYEDYIEHFQMDPFSEETLESGENLTKEIGESRRRKWQEFIQSTDMTHSSRKAWKTIRILGNDYTKAQPRSEVTADQVAHQLLLNGRGNPDHHPRRARLPKVPDALSSQDDPGFTRPFTMNDLLAAIKAMKNNKAAGLDDILCEQIKQLRPGALNWLLKMFNECLGTNNIPKLWRKSKVIALLKPGKDAASPKSYRPISLLCHTYKLFERLILNRIAPFVDEHLIPEQAGFRPGKSCTGQLLNLTQFIEDGYESKLITGAAFVDLSAAYDTVNHRILTRKIFELTKDVRLTGLIQTLLSNRRYFVVLNGNRSRWRRQKNGLPQGSVLAPLLFNVYTNDQPIHPNTRSFLYADDLCIATQNQSFVKLEESLSDALAGLIPYYATNHLRANPDKTQISAFHLKNRDANHQLRISWYGKRLKHTPNPVYLGVTLDRSLTYKNHIANTKAKVGARNSILKKLANTNWGTDARTIRTTALALCFSAAEYASPVWSRSAHAPKIDPALNSSCRAITGCLRPTKVEDIYLLCGIAPPHVRRLVLSQKEKDKQENNPLHPLFEQQPVGKRLKSRHSFLHSVEPLNTSPHNQRMTLWSNHLQTTPHKLSLSPKESLATGSSETWPTWLSLNRLRTGYGRCRVLMQRWGLGDEQTACECGQEQTMEHLLVCPLLPEPCTQDDLEAVNCRAKACVDHWTGLV
>Ingi-3_AC_pol#LINE/Jockey 451-4323 [Aplysia californica]
MMTGSKQDFRCGVSSVESRQADEVPGPLPRRGPPQATGGTSVSSRGARRRDQRNTTTGQSSPESQQRPLKTFQWNCEGIYNKKDALKDTLIRERIDIVCLQETHLTSAMRFNIRGYQTFRKDRNYAPKGGVLTLVANSIPAKEIRVQDTGESEIIGVELKLPDRIVTVYNCYAPPDKALTLQVMDIPAEDCLVLGDFNSHSPSWGYRDLDAKGEEIEDWQAFTKLHLLNKPDDPPTFFSRAWKTTSHPDLSFASNNISRGSTKQVMEQLATSDHKPILITSQVSPPTVSTSTLPRWNYKKADWTKFASLTDVYTTKIHAKTSNTNRSAREFTQAILQAAKESIPRGARKDYVPNWSEELRMLNDKVTTAREAVENLPTTENNIQLKKAAAEFKKATNSAVRKSWHEKTSSLNLHRQGNKLWRIVRSLNGENLNKDAPVILDKDGESNVDKQAANLLIQQYKEVGKLEISPDRIEEVQRKIHAFESPQEPKDDVMTKPLVMTELDRALLQLKPRQAPGPDKISNDMLMHIGNTAKKKILQIFNSSWKNGKIPKAWKTAIQIPLLKDGKPKNSAESYRPISLTSCLCKLLERILNYRLCWFLEKNHLLSDNQAGFRKHRSTEDQITYIAQMVEDGFQRKEHTVAVWIDLEKAFDKVWTEGLILKLQNLNISHNMLKWISQYLSQRRACVKLQGKRSKMETISNGVPQGGVLSATLFLIFLNDISTTITKKVTAAEYADDIALLCSAESVGTAQVRLQSTLNNMMKWTEEWGQKINKNKTTYTTFSLSPKPRKVNLHLDGNTLQHESNPTYLGVTFDPRLTWQAQTERCRSKGNRRTALLRKLAGSDWGANHTVLRGAYVGYVRPVLEYGIAAWGTASDSNFHKVARIQNQNLRIITGAMRSTPIHVMETLTGLEPLNDRRDLKAIVHQEKVKRMPTHPMKDRSSKSQSKRLKRTSFLHMARHSSSGLEISLEESPTPLDPCQVHPLQTNHPPQIRENLEKLGTKSEVPPPILKSLTLDYLDRNFPSNRWNRVYTDGSATDAVRNGGGGIYIEWIDGSTESHSIPTGSLSSNYKAETSALETAATILLNHQKSKANTVILTDAKSVLQALQKPQTAQVRQLLSLLCDLNSQANTTLQWIPGHCGIHGNEKADDLAKEGAKMTQIEDGMDLSESKTLIKTALRNRWKRSHPKHNRHDPYYILNRADQVTIFRLRCGHNRLKHHMHTKLKVGETAICECGHDQEDANHILQHCPRYATLRTQTWQNVAPLERKLYGSLSELKRTAQFVRDIGLTV
>Ingi-4_AC_pol#LINE/Jockey 714-4652 [Aplysia californica]
MHRTAGRPQTWVGRKATGSPANMAKKNKLNSSELGRRLVYQGPRHAVPLQAAGEKLATGKTEQFRLLQVNVCGLANKKIEISHLLDSRKIHVALLQETIHRNTDPYIPGYTHYTCTCPDCQGVITYIRNDIQGKVENITTDTRTDTQKATIWYAGCKFTIFNIYSPPGNDCSFSFLQESIYTKTIVAGDFNGHSPQWGYRTYNKSGMAIEELCGTTNLLVLQDKKSTPTLLHRAHNTLSRPDLTILSSDLFQRHTTEVLDGIGSDHRPIMTSVSTPSQSHFVQKTKWNFKKANWELYKTTTEKLLKDITPNPSVDVFCGAITDSLLKAAALCIPRGCRKKYKPFWNKNIEQAVQDRENARKTLESNPTTGNKINYKKASAKVKQTTLLAKRNKWSTTVADLDLRRNGAKAWSLLSNLCGEKRRNNPKPMDTEEGTIVEDQKKAETFNKFFASINKATPHTDQHRDCLKRLKEKEHAPNASISLFEDDFTLTELNRAMKKLKPRKSPGPDKIHNEMLVNLSPIGKGYILQLINKTWNENTIPRAWRNAIITPILKKGKPAEEMKSYRPISLTSCIGKLAERMVNHRLYWWLETTGALDSNQAGFRAGQRTDDQLFRLSQKVLDGFQEKKHTVAVFVDLQQAYDRVWRKGLLWKMTQTGIHGKLYRWVKTFLTDRTIQTRINNGVSSKAVLEEGLPQGSSLSCTLFLVFINDLPETLKSEKALYADDLAIWHTSKQAGISARLINEDLDRFNNYCCKWKLKANCTKTIYTVFTKSHKVAKQNLTILLAGNKLEKVENPTYLGIELDRQFSCKNHIWNLKTKANKRLNLLRRLASTSWGADKDALRQLYVGYVRSAMEYNLTLQTICSKPTQRSLDKIQNQAVRFISGALRSTPTAACEIHTNLEPLDLRREAAVVEMSERYKRLEKNHPNRKIIEQRRPKKRIHGRSILDTATELAEKHHLPCNREMLKPLRPELPPNTNIKNANIKTSLIKETVKKECDPVELKTTALKTIDSYPSDSIHIYTDGSAFKGTINAGFGVRIEHPDKTCEELFDACGTSCTNYEAEAIAIEAAILHLTNIFIIHPNKIKNTIIFTDGKSVLQALENMNFESPACLSVAQTINTFIQTYAVDLTLQWIPGHSNIPGNDRADTLAKKGATQTQPHNPVSQQTAKNIIKCNTREQWLNGWAMGKTGRTVFAHMTAPNSKDAINSLSRREQVTIFRLRTQHIPLNSYLNRIRKDTPPDCPLCDCQDETVPHHLFNCPALCDLRSTYLPASPDIGNTLYSDKAQLIKTCQFFAISTDRRARTQMAAGSEK
>Ingi-4_SPur_pol#LINE/Jockey 175-3086 via tfasty with Ingi-1_SPur, 1 frameshift. [Strongylocentrotus purpuratus]
MKMPNRAASQSNSAEGPLSRPALTVLSWNAEGISDAKEEVLAHMCKQMNCDVLCLQETHRGSDNPRPKIKGMKLAIERPHRQYGSAIFMNEKIRPDSTSYTHNNDIEVLNVTIKGLTISSIYKPPNISFSYPSTTTNRHIVIGDYNSHSTQWGYDTTGDDGALVETWAQNNDLKLIHDPKLPKSFASARWKRRYNPDLVFCSRLLAPTSRKFVAEPIPRSQHRPIGIQLTAVITPNKTPFKRRFNFAKADWPAFTEHLDHALTHLPADPKNYESFIDIVKKVSRTHIPRGCRTTYIPGIDEESSQLLANYTTAYDTDAFSEDTINLGEELISRISQRHRQMWQHMIETTDLRHSSRKAWATIRKLGIDSTRAQQHYNVTADEVANQLLKNGKAPKTTNSHRHKLPGVDQNMSLFTRPISEEELQKGISTLHVNKAAGIDDIRSEQIKHMGSVAQKWLLDMFNNCIENTCVPKQWLRTKVVAILKPGKDSNEAKNFRPISLLCQTYKLLERLILNRIGPHVDSQLNCEQAGFRPGKSTTGQLLNLTQHIEDGFQNNLITGAVFVDLSAAYDTVNHRRLQTKLHDITNDLKLTRFIQKMMQNRRFFVELDGQKSRWRKQKNGLPQGGVLAPTLYNIYTADIPSTENTRNFIYADDTCITAQHSTFEAVELHLNTALASLSEYYRANYLRANPSKTQVCVFHLKNREAKRELKLKWNNVQLNHCEHPVYLGVKLDRTLSFKKHIEKTIGKVESRNAIIGKLASSHYGADPKTVQSAAVALCMSSAEYACPVWSRSAHVKKLDTTLNNTYRKITGCLKPTKVEEIYHLAGIGSPNQRRTNTCLKERMKQATDDRHMLHGYLQPHKRLISRHSFLDSVPPPEQNPPPSAKPVLIKGYNLKWPEWQCLNRMRTRMGRCKVNMARWGYAHEGDTLCDCGETQTMDHLLQCGGTGCTDEDLSLVNETAIAAIERWKNLI
>Jockey-1_CQ_gag#LINE/Jockey 45-1421  [Culex quinquefasciatus]
MTRRVPAQNAGNIALPAAQAGKKVGISKRKVEASTDGQKPGISKRKVLLEVTSNSKKTKKSDGTVPMDEEEENSSSHEEQLLKNNKFAGLPDEDQVAEAKENEVKQRKEKLPPFYVRQSAATIDFRAGLVELIKSGKVQGNIRLCQDGFKVLVQSRQHYQLVKDYLTENEAEYFTHDVVMDKPYKIVVRGLYDMPVEELAAELKVLKLDVLAVHKMSRRNKDIKYRDQLYLLHLAKGSTTLPELKAIRAVFNIIVSWERYRPVHRDVTQCFNCLGFGHGGKNCHLKRRCAKCGTDAHITSQCIQDSLVKCLNCNGEHSSTDRKCPKRAEFVKIRQQASTKNQPQRRRTPPALVEQNFPPLQPRRQVPNLAPLPLDPRKRAEMNHPRPGSSQEPRPPPPGFSQEPRPTQEPAVEENGNDLYTSTELLNIFKQMSAALRGCKTKTQQIEVLTSFVIQYGS
>Jockey-1_CQ_pol#LINE/Jockey 1411-4065  [Culex quinquefasciatus]
MDRRSLKLLNWNACSIRRKNLELVDFLREKEIDVAAITETHLKPGEKVYLQNYKIATQLDRTTSGGGGVLVAVHRDLKPRRLPHFKLDIIEAVGVEIPTSVGPVLFIAAYCPRQVNARDGSAAKLKSDIQKLTRRSAKYIIAGDLNAKHEVWGNSRRNRNGVILHNDLQNGYYNVVSPDRPTRVARSGNHSIIDFFITNMAENVAHPEVFEELSSDHYPVVVEVGASVTPQRQPTRKDYHNVDWQQFQQVVDSNIDYDQHPETSADIDRSLEVIQQAINQAEAANVREVPVNFKVTDIDVDTKHLIRLRNVYRRQYQRTGDYDKKISVNNLNKIIQDRLDNIRNQEFSKHVSQLGNYSKPFWKLSKVLKNKPKPIPPLIVEDSXLITSEEKANALGLHFVSSHNLGASMTSRKETSVANSISTINDSTFEFPADSHVSGEEVKVAVKQMKNMKAPGFDNIFNLVLKKQSDQFFQHLANIFNKCLQLGYFPTNWKLGKVIPILKPQKDPTSPTSYRPISLLSSLSKLFEKVIYSRLLDFTNDNNIILNEQFGFRKGHNTAHQLTRVTKIIKQNKLESKSTAMALLDVEKAFDNVWHDGLIHKLYLYGFPMYLIKIIQHYLSERSFRVFLNGIASGLFNIDAGVPQGSILGPLLYNIFTSDLPTLPGNGVLSLFADDTAVIYKGKITRYLVGRLQKGLDVLSEYFGDWKIRINAAKTQTIIFPLSKSARFVPKDDVLIKMNDVSIPWSKEVVYLGLILDSKLLFRQHVDKILNKCSILIRCLYPLINRKSKLSLKNKLAVYKQIIYPVIEYAVPVWECCARTHKLKLQRVQNKVLKMVLNVPGWTRSSEVHELAEVKMLDQKIQEKCLKFREKCAISEYPLIQGLV
>Jockey-1_DYa_gag#LINE/Jockey 396-1988  [Drosophila yakuba]
MSSDQKNERRSSVNPRNACYSYFSTRDIDQNQKSTKSNSTLLTVDSKRASSCSPSLLTPTPASWSYQCQTPSPPASLNEAPTTSSAKISAVNSPPIIKPTTNTASSVPTAAQQNKMATKTVSLDKQQAVPAIQTGMDRYIQIKRKLSPPNTVGNKPKINRTNKSTDQTRSSNENRFSILAEADNNQPELGQETQRKPKPPPIYIREKSSSALVNKIVALVGDENFHVVPLIKGNIHETKVQTKSEEHFRAVSKYLEDTKKNFYTYQLKSSKGLQVVLKGIEPDVTPSEIQEALKARGFCAKNVSNIVNRNKKPQPLFKVELEPDSKALKKNEVHPIYKLQLLLHRRITVEEPHKRNGPVQCTNCQEYGHTKTYCTLRTVCVVCGDFHNSVNCPANKEDPQMKKCGNCGGNHTANYRGCAVYKELKSRMRRATATHQQHFAKAARSSFGQLDTTKGISYAEALRTGMENPPQPHSENAQQVPVQPQSKLESMMFTMQQSMMELMSFMKTTMQTLVQNQNMVIQLLVAQQSK
>Jockey-1_DYa_pol#LINE/Jockey 1992-4649  [Drosophila yakuba]
MTNLRISMWNANGISRHKLEITQFLNVNHIDAMLLVETHLTGRYNFHIRGYTFYRTDHPDGKAHGGTGILIRERIKHHFHQRFATNYLQATSIKVISGNGNLCIAAVYCPPRFNISEGQFMDFYNTLGDRFIAAGDYNAKHTHWGSRLVTPKGRQLYNALIKVSNKLDYVSPGSPTYWPADPKKIPDLIDFAVTKNIPRNLISAIALPDLSSDHSPLLISLLQSPEIADHPHMLTSHNTNWMKYRKYVSSHIELTPQLNIEADIDCSTAALEEVLVTAARISTPKRKDGEFKKFKTNRQIEQLVLEKRRLRRAWQTSRSPCSKQRLTEATRNLNRALKQEAENEQLKYIGKLSPTSTKHPLWRAHPNLSSPIQTVTPIRNSSGCWARSDKDRAESFALHLRGVFQPNPAANDYVPPQIHLETESTPTTFQPNEITKVIRELKPKKAPGGDLITTKMIMELPYCAIKVICKLFNGIISLGYYPRKWKKSIIIMIPKPGKDHTIPSSYRPISLLSCLSKLFEKCLLTRIIPYMGAHNIIPAHQFGFREKHGTIEQVNRITSEIRTAFEHREYCSAIFLDVSQAFDRVWLKGLMHKIKTHLPGYTHKLLESYLYNRAFAVRCNTTISDSYTIEAGVPQGSALGPTLFVLYTADIPTSDRLTTSTFADDTAILSRSRCPVRATTQLANHLVVVEKWLSDWRIKINEQKCKHITFTLNRQTCPPLCMNSTQIPQVNEVTYLGIHLDRRLTWRRHIKCKKLHLKLKASSLHWIINSRSPLCLDYKVLLYNSTLKPIWTYGSQLWGNASRTNIDIIQRAQSKILRTITGAPWYIRNQNIHRDLGILAVKDEIDKQKASYNEKLSVHPNPLARVLTRVSSRTRLQRTDLPTQP
>Jockey-1_TCa#LINE/Jockey 329-2746 [Tribolium castaneum]
NSQPSSLFFESLMGANQLIQNSFQVAFWNANGLRAARDELEEFVDRLQLDIVLVCETKLQPQTTDPKIRGFTLHRADRGIGPGGGTAIFVSNRIKHSVLATPDLRNMEAVGINVATANGPLRLFACYNRPQIPILEEDLQTLFDGNTPTIAAGDFNAKHINWGSRRSNRNGNILNGFTDQHLDISVMAPVEPTFYRNSDGXADILDVAIVKNVVHQVRLTAINDLSSDHNPVLMQIGNEANDPIVCRYTSVDWRKFTKHLVNNFGTIPPIRSTEEIDEAVQTFETKIRDAITPPPGNXELGPKTGDXITGPHRRSTRADXXHVEEIEDHVESIATEDPDEPLTPTTPEEVSGVIRKLKKRKASGPDEISNRALKNLPLKVIVELTGILNAMFSFRYFPQRWKMATVIFIPKPGKDPKFPQNHRPISLLSAVGKVAERLIRSRLLQLTQERHIVPDEQFGFRSNHSTTDQLLRVVEHASISIERKQVTGAVFLDVAKAFDAVWHDGLIYKLHQTGIPLAMVQMIRSFLDGRRFQVRINNSVSDPQDLEAGVPQGSVLSPLLYSIFTHDIPKTDRTTLAIYADDTAILTRSKQPYMATRYLQESVERIENWCRRWLINVNPDKSRALLLARRRVSPDGFVRMFNADIPWSDQVKYLGVILDKKLSFGPHLDYALAKGKMATGMLRSLVCRRSALSIDNKLLLYKSVIRPTMTYASVAWAFAPCKTRMHKLQTFQNKFLRQAFNAPWFVRNNQLHREAKMPTMEEFFRETAERAFSKAEAHPNPLVREAVDYDENGPSRCKRPRMALL
>Jockey-1_TCa#LINE/Jockey 365-2746 [Tribolium castaneum]
MGANQLIQNSFQVAFWNANGLRAARDELEEFVDRLQLDIVLVCETKLQPQTTDPKIRGFTLHRADRGIGPGGGTAIFVSNRIKHSVLATPDLRNMEAVGINVATANGPLRLFACYNRPQIPILEEDLQTLFDGNTPTIAAGDFNAKHINWGSRRSNRNGNILNGFTDQHLDISVMAPVEPTFYRNSDGXADILDVAIVKNVVHQVRLTAINDLSSDHNPVLMQIGNEANDPIVCRYTSVDWRKFTKHLVNNFGTIPPIRSTEEIDEAVQTFETKIRDAITPPPGNXELGPKTGDXITGPHRRSTRADXXHVEEIEDHVESIATEDPDEPLTPTTPEEVSGVIRKLKKRKASGPDEISNRALKNLPLKVIVELTGILNAMFSFRYFPQRWKMATVIFIPKPGKDPKFPQNHRPISLLSAVGKVAERLIRSRLLQLTQERHIVPDEQFGFRSNHSTTDQLLRVVEHASISIERKQVTGAVFLDVAKAFDAVWHDGLIYKLHQTGIPLAMVQMIRSFLDGRRFQVRINNSVSDPQDLEAGVPQGSVLSPLLYSIFTHDIPKTDRTTLAIYADDTAILTRSKQPYMATRYLQESVERIENWCRRWLINVNPDKSRALLLARRRVSPDGFVRMFNADIPWSDQVKYLGVILDKKLSFGPHLDYALAKGKMATGMLRSLVCRRSALSIDNKLLLYKSVIRPTMTYASVAWAFAPCKTRMHKLQTFQNKFLRQAFNAPWFVRNNQLHREAKMPTMEEFFRETAERAFSKAEAHPNPLVREAVDYDENGPSRCKRPRMALL
>Jockey-2_CQ_gag#LINE/Jockey 229-1515  [Culex quinquefasciatus]
MTPPSSRRHRRNSTGGISSISDQLNEHRPLTQPGGSSGGFPTANQFEMLDFDISGDEQEDVNNGGGGEILPAGDGAASGNAAGKVVKNVPPAPAKVRCPPIFVHGSSVPALNRLMSTTQLGADDYHLRVNKGYIQIRVSTKSHFTSVVSTLKQANVQFYTHGTSDETPVKIVLSGLPVFPVEDVRRELEDVFLRPTSVRQMGKSKHGDYALYLLQFEKGTVKLQELQQIKALFNVIVRWRHYSKKKSDVVQCFRCQQYGHGMRNCHLEAKCVKCGERHQTTACALPARADVVVNDDRSQIRCANCNQNHTANYKGCPTRLKYLQDLKAKKKTSPAGRSNLPKVSAVPAPAPRPPGGDLSQLLGSIANPGVSYSQAVQGQPESSTLFTVEEFMCLASELFTRLSKCQSKAMQFLALSELIIKFVYNGQP
>Jockey-2_CQ_pol#LINE/Jockey 1502-4177  [Culex quinquefasciatus]
MANLSSLKVMNWNCRSIRNKVVEFFHFLETHQIDIAAITETWLQLNNSMYHEHYTIVRADRESTEAARGGGVALLVRNGIDFSKLETSTRAIESVGITVKTDPAPVNIFAVYYPGSPRRATLSQLRRDIRQLSSIDGPFFLVGDLNARHRMWNCARANKAGQILHQEYESKDIYIHAPDTPTRCPAGRGRPSTLDLVISNNQVQMSKPITHVELSSDHLPVTFTIDVDVPVAPAGRLVRCFDRANWSTFARSIEREVDLNASWINTLDRSEKIDDAIDKFTAILKAAEEAAVPSRRILPQKKDIPDELKLLIRLRNVRRRQFIRRRDPLIGAVVTHLNNVISTKSAEHRYKNFGSLLRTLDNGSNKFWKLTRNLRNTVKYSPPLNVNGDLVASPSAKAEALASAFAAAHNNEQPGDPETSAAVENALGHIRATTPPVPPAALVKPKEVKAIIRTLKNRKSPGQDGIRNTCLKQLPRKGLVVLTKIFNACLALGYFPARWKHANVIAIPKANKDITNPGNYRPISLLSSLSKLLERVILARINRHLETEQLIPHEQFGFKPGHSTVHQLARISEMVKRGFLAGKSTGMILLDVEKAYDSVWQDAVVYKLFRSNLQPFLVKIVESFLTNRSFTVTVNGERSSVHNIPFGVPQGSVLSPTLYNILTSDVPMIDGVSYAFFADDTAYLASDKDPKIVVTHLQAAQNNLEEFQRKWRIKLNAGKTQSIFFTRRRAARHLPRRSISVNGQPATWDDEVRYLGVVHDKKLKYDKHVNNIIEKVDRSTKALYSLLNRRSKLSIKNKSLVVKCIIRPMLTYAAAVWGNCAKSHRKRLQVKQNKLLKMVHNLDPWYPTDDLHELAGVDTIDASIEKATRTFRTSCGMSTNPLIEALLRQQL
>Jockey-2_DYa_gag#LINE/Jockey 323-1264  [Drosophila yakuba]
MTQTNNRETFKIVFWNACGANNKVDELSLLIQREKAHIVIVTETRLDRKSTKLDFPGYVTYLAQNPVSSKRGGVATIVSTRVRHSALEAIEKECIQSAPIVLLPENNRRNEMMVIASVYCPPQPKWSSSHFSDILNYAEKILGGRTKFVLCGDWNAKHRQWGCSRGCQRGAALYDAVKADTMTEIIATGCATHFPFDSRKNPSAIDFSISKGLGMYEKKISSSSDLSSDHLPILLEINLDRNTFFLHKQNNSILKKNTNIVLFKNALDRKVLLNTEIRVAQDINDAINIFIKNIMEQLPPQTTRQPQKQARAN
>Jockey-2_DYa_pol#LINE/Jockey 1257-3548  [Drosophila yakuba]
RTNRHSNTLTLDENTSRLLEEKRTLKRIFKATRTNEDKAKLKAAENRLKKAIKTLREKTINKQVEGIDTKNPDRMRQLWRLLDEGKKKIQPNFPLKLETKEGYKWTKTTQETTEAFVSHLEGRFKPNMIIPDCHISKINTGLKTIKESNTAERENTNKNPHNQPVTLKELREELKNLNNNKAPGKDLITNKLIKNLPTKATLYLILIYNSILRIGHYPDNWKHATVKMILKPGKSANDPKSYRPISLLSGFSKIFERLLLKRLVRIDSFKKAIPLHQFGFRKDHGAEQQIARVTQFILEAYERKEYCSAVFLDITEAFDRVWHEGLLLKLAKILPFNLYTILESYLTNRTFEVKDPTGEPSRTGQIGAGVPQGSNLGPILYSIFSSDMPIPRTHSVSPTGEMLLSTYADDTVVLSTDQLPTAAIRNNQNYLETFSDWADKWGIKVNAAKTGHVIYTLKNDLPTNLKTIKIRGNKIKNQNKQSYLGVILDNKLTLSSHVTKLVGKFTAAHKKLTWILSERSKLPDNTKMLIFKTILSPIWQYAIPAWGPLVTDAQIKRIQVEENLKMRKVCRAGRFTRNQFIRDKYGVKTVEDYYKQATHRFYETIKTHPNKAVRRIVTRHYIPKRLERSRQRLLKLTKEHIPQGPTGLTSPKLPKIPELYECKTLKTRKERDSIRTRHLEDLPTLLRLEEMEDIRIRNQEEMEKRERENEKWPPDRWCELEINMYNKRYRNGDLTRQEIIKKFRGQPIGIQRIILPDYEGDTT
>Jockey-3_CQ_gag#LINE/Jockey 146-1543  [Culex quinquefasciatus]
MRQNKGKRKSSEDLVVTSVKRLNAKPANGNRKRKQPLLRSDSDSECEVNPPIPLTNSFGVLSETDDKEPSPRTEPSAVEKRVKAPPIVVTSVSDLASFRTQLKNCKETCNLKVSFQLGRRGECRLLTESLQDHQTFVGYLKNHKHNFYTYETKNARPFKAVLKGLSNDLSVDEIKNELKVLLGFAPSQVIPMKKKSNGNISRFGLTSQFYLIHFNRNEINNLKLLDKVQFLFHVRVKWEHFKKHGGNGQNLTQCRRCQAFGHGTDHCAMVPKCMVCGDSSHDKDNCPVKEVTQFKCANCGGNHKSNFWDCPIRKKVLDSRAKHQPKSKPKFSQSQVVPASLNQTFVLSHSNNSRNTPTVEKLGNNNGISYANVVSGSSTNFKSSTNLSEIGQVPQISFENFSAGNALGSSDLGDVTFEKMTFLQNSLFGLIQTMSNATSMMEAIQIGLKFANDVVLTLKFNHGSK
>Jockey-3_CQ_pol#LINE/Jockey 1530-4190  [Culex quinquefasciatus]
MDLSNSINIMNFNARSLKAKENEFFNFLRVHNVHVAVITETFLKTGTYLKSDPDYKVITNNRMNRNGGGVAIVIHRSMTYSTLRDFKLKVIESLGIELETSFGKIMIAAAYLPFQCTGENKNYFKGDLNKLTRHRSRFLIIGDFNAKHQSWNNSKVNSNGKILFRDCTSGLYSVLYPNGPTCFSSVRNPSTIDLVLTNQSQYCGPLVTHADFDSDHLPVTFSLSHEAVTRPNSSVFNYHKANWDRYQHHIENNLNHDFVLETKADIDSALESLTNAILDARNIAIPKVQVKFDSPIIDDDLQLLIRLKNVRRRQYQRSRDPALKRIQKDLQKVIDHRFTLLRNEKFARDVEQIKPYSKPFWKLSKVLKKPQKPIPSLKDGDNILLTNGEKAQKLAQQFESAHNFNLNVLSPIENQISIEFQNIVEQEFSSDEVFNTDLNEIKSIIKKFKNMKAPGEDGIFYILIKKLPEATLSSLVKIFNKCFDLAYFPSSWKNAKVIPILKPDKNPAEASSYRPISLLSSISKLFERIILNRMMTHINENSIFADEQFGFRLGHSTTHQLLRVSNLIRSNKSEGYSTGAALLDIEKAFDSVWHKGLIAKLKRFNFPIYIVKIIQNYLTDRTLQVCYQNSKSDQLPVRAGVPQGSILGPILYNIFTSDLPDLPPGCQKSLFADDTSISAKGRSLRVITRRLQKSLDIFNSYLKEWKITPNAAKTQLIIFPHKPRADFLKPKSHHIIKMNEVNLKWEDQVKYLGLGFDKNLTYKDHIESIQVKCNKYIKCLYPLINRNSRLCLKNKLLIYKQIFRPAMLYAVPIWTSCCLTRKKKLQRIQNKILKMILKLPPWFSTSELHQLAEVDTLDVMSNKIIDAFRQKSLQSSAALIRSLYSL
>Jockey-4_CQ_gag#LINE/Jockey 1199-3847  [Culex quinquefasciatus]
MDNYTPTRILIWNSCSIGRKTLELSDFLRSNNIEVAAISETHLKPGDKVWVPDYVPVTLERTRCKKGGVAVLVHHLVHFRVLPSLQTKFIEAVGVEVDTSTGPVAVVAVYCPKQCRIVDGSLADYKNDLLKLTRRFPRFIIAGDLNARHSLWGNPSNNRNGNVLAEDLQAGHYVVLHPESPTFFSHAGVGSTLDIALTNLSEFCTPLQALTELSSDHLPVIFNLEARVNERQRLRRHNYHRANWIRFKQFVDDRVEENPVLDSKEAIDRALLVLEDSLNEAKDLFIPTAEVSSKFVNIDPETKRIMSLRNAVRRQYQRTGNPGRKALFKKLNKIVSVRVEKFRNRQFSKHLKSIPPYSKPFWRLTKILKTKPKPIPPLKSDDLAVTPVEKANLIAGHFLTSHNLGRDIVSPMEGPVLESIHQLAHTPWVLPDDQKITLEELSGWLKGLKNMKAPGFDGIFNIVLKHLGEKARTLLVAIFNRCLELGYFPTAWKRAKVVPILKPGKDPSSPTSYRPISLLSSLSKLFEKLIYRRLLAHVEENNILLDEQFGFRRGHSTVHQLQRVTKMIHRAKSVSKTTVMALMDIEKAFDNVWHDGLVHKLMQFNVPTYLVQVISDYLDRRTAQVNIGSSVSDPYDCPAGVPQGSILGPLLYNLDTSDIPPLPGGGTLSLFADDSAISYEGRNIRHLVTKLQNGLDVYTRYLSDWKICVNAAKTQAIVFPHRNTDRLKPTTKLKVLGTEVDWSQVVRYLGLLIDSKLLFRYHLDDRIIKGIAMLKKLYPIINRRSKASLKNKLAVYKMVVAPMLLYGSPVWQGCAMTHRKKLQVIQNKFLRLILNQPWRTRSSDLHRLASIEPVDARLASLAEKHRNRALVSEHGSIRGLYP
>Jockey-4_CQ_gag#LINE/Jockey 55-1206  [Culex quinquefasciatus]
MTKKRRGSPLPGPPGDPLLAKNPFAPLANPGPAPPATVPRKEKLPPFFVRSIEGNLKADLDALIKRGLKATMKLCTDGFKIIVPSKPHFNAVLEYLRQKKAAFFTHDIPADKPFKVVLRGLYEMQEGELTDYLSDCGLKVVAVHKIRRKETNTRFRDQLYLLHLEKGSTTLKDLKLIKAVANVVVEWEQYRPVHRDVTQCWKCLNFGHGGRNCFLASRCPNCGENHDQAQCAAEILVAKCCNCGGDHPSTDRACPKRAEFIQFRKNVAARKNNGRPKPTPINQESFPALPNRNRVPNLEPIPLPGLRPKPAPNPVPPGFQRFDPTPGVKPNPPGDGPRPRTKLLTAAELLNTFKIMYAKLMQCQTVEEQSMAVLEFTYQIVYG
>Jockey-5_CQ_gag#LINE/Jockey 339-1529  [Culex quinquefasciatus]
MDTEGSTSEGGDGSTKVIEVNIPTSNQFDGLEDEQGDDPISLPPNPTPPPVLRIGEPAKGKKVRVPPISVVGKSTRQLREFLGQSRIQQTAFNMKATKTGVQLICSGEDTFRSALAALRGANIQYHTYTPAAEQPMKVVLSGLPVYDEAELETELAVLGVHVQELKLFSRKVAGLEESALYLLHFAKGTVKLSDLQKVKAVFNIVVRWRYYERKPTDAVQCHRCQRFGHGMRNCNLAALCVKCGEKHLSAECRLPNKADLARVDKNVTREAIKCANCSGQHTANYRGCPTRKNYLAKLAEKKAQLRNAKPPILTPPRNTVPQNGSTGNDSPVGTSTMTFAEALSQGSSNNTNSDLFTMSEFLALAREVFARLKSCKSRLDQLEALVELTAKYIYSV
>Jockey-5_CQ_pol#LINE/Jockey 1525-4191  [Culex quinquefasciatus]
SNAVDILRVANWNGRSVHGKKLEFFDFLERHDVDVGIVTETWLHEEQAFYHPKFRCVRFDRDSADAERGGGVLIAVRKGLTHTELDFSTKVIETVGISVSTADGNVHIIAAYFPGARRRSAWTQFRRDISTITRGAEPFFVVGDFNARHRSWNCARANXAGTVXFQEAASRNFFVHFPDAFTFHPXGRGRPSTLDLALSNNLLDMTKPVALNELSSDHRPVLFDVSLSAPIEQSSPKFRCYARADWPRFQREINAKLDLLNPEVTDLNTEADVDAAVEFLTKTLLEPKLFQFQKFNSVATXLXQSRGHPQADRAPQHAKASMVQETGPDLPGHRVVTKPXNSEECNQANFNKFKDTLRTLHDDRDTLWRITKALRKTTKYSPPLRXGTNIIASSSEKAXLLAASFAXAHTNQMPDDPVTVAEVNNSIDXIDRTPLADNHSWLVRPKEVAQLIRRLKAKKTPGQDQLRNIVLKRLPRKAHIFIAKIFSACVRLGYFPAAWKHAVVIGIPKPNKDATNPSNYRPISLLPTLSKLLERVILVRIDQHLENTRVIPDAQFGFKRGHSTNHQLVRLVKEVRANFARRKSAGMVLLDVEKAYDSVWQEAILHKMYLANFPLYILKIVRSFLQNRSYHVAVNGHVSDRHEVLFGVPQGAVLSPTLYNIFTADLAMINGVSYFLFADDTGFLASDSDPAIVVTKLQAAQNAIERYQKKWKMKTNAEKSQAIFFTRKRSPRYLPRREVSVWGSHVPWSEDVNYLGAALDKKLTLAKHIKNATTKCGKITRMLYPLVKRRSYLDRNSKLLLYKTVLKPAMTYAYPAWHDCAASHRKKLQVKQNRLLKMVLNLDPFHPTDDVHRMAKMELIDDWLLRVLPKFWMGCATSANPLLQRMSP
>Jockey-6_CQ_gag#LINE/Jockey 158-1477  [Culex quinquefasciatus]
MKPNVRLKGGSAKNSNLTSQRVVNAAKNSRIQRQNMFESGRRTRSLDRITPGGSSSGSGGYQTRSKTNGSSPFLSQNCFDALGDDDAGDGVQGEPEKKQPRVRIPPIHIMGKSVGEVVKLLATNGVPQSDDYWLKYTKTSVQFQTKVKELFTKTTALLKSSDVQFFTHDTSEDAPTKFVLSGLPAVSIPDLKEELEAMGILPLDIKVLSSKKSGADEHTLYLVYFKRGTVKIQDLRRTKAIFNVVVSWRFFSKHPNDAAQCHRCQQFGHGSSNCNLRPKCVKCGGKHLTDVCMLPRRAELNNNNNSKSQLKCANCGGSHTANFRGCPARKAYLDELEKRKKKPSRPAPPPSGPAPGRNSGAQGGPTHRSSFAATGRPTYAQVSSMNTPPCANLSDGEGLFTVTEFLSLARDMFSRLVGCRTKQQQFDALAELMAKYLYG
>Jockey-6_CQ_pol#LINE/Jockey 1470-4148  [Culex quinquefasciatus]
MGSLSHQLKIVNWNSRSVLLKKIEFFDFLSRHQVDIATVSETWLKTKNSFHHPDYRCFRSDRTSTDDERGGGVLIALRKSLNVDYSVLDLNTSAIEAVGLEIRFPTQTVHFIAAYFPGIHRGAAWSTFRRDINTLVRRPVPFFVAGDFNARHRQWNCLKANRAGNFLASRAVSSDFFIHAPRSFTYQPPGGRRPSTLDIVLSNNLVNMSSLTVVNDLSSDHLPVLFSVDVAVPFQRFPTTTRCYNRANWPAFQRIVNEKIDLNSPVATNLDSPAGINRCIEFFTSTLLEAEAAAVPVVPVRTYEDAKFPESARQLVTLRNTRRRQWYRTRDPLLGAIVESLNNRIRFECSIARNQHFSNNIRYLENGAKDVWKISKALRKQVKYSPPLQAGDTLKASPEEKANLLADNFARAHRNPSPGDPTTSSAVEASVQQIADSTIPVESVPVVRPKEIARIIKSLKPKKAPGKDNIRNTLLKRLPRKGLVMLTLIVNACLRTSYFPSSWKHAIVTAIPKPGKDITNPTNYRPISLLPVMSKILERVVLTRIGNFVEQRNVVPPQQFGFKRGHSTNHQLARLTRNVKSSLARGESAGMVLLDVEKAYDSVWQDAILHKMKLAGFPAYILKLLNSFLKQRSFQVAVDGALSRRHEIPFGVPQGAVLSPALYNIFTSDLVMVDGVEYYLFADDTGFVAADKSAEVIIEKLQAAQDSLESYQRKWRIKINPAKTQAIFFTRRRAERFLPQSRVLALGHEVPWSDEVKYLGLALDPKLKYDKHIDAALQKCDKLTRMLYPLVSRRSRLSNANKLLLYKLIFRPTLTYGFPAWHSCASTRRKKLQTRQNKILKMMLDLPFNFPTDELEEAANTESLETWTSKLLQRFWTSCTMSENTLISSLVP
>Jockey-7_CQ_gag#LINE/Jockey 235-1380  [Culex quinquefasciatus]
MNTSNNRIPPFIPLRNDFDILDDDDNGDGQNGVEQAKKAPKVRLPPIHVMDLSVGDVFKLLNDNGLPRSEAFLLKHTRTSVQFLTKSKEVFDKAVSVLKSKNVKFFTHDSSGKAPSKFVLSGLPLAEVEDVKEELARVNILPRDIKVLSSSKSAVDQHALYLLYFDRGSTKLQDLRKTKALFNVVVSWRYYSRRPNEVAQCHRCQRFGHGSTHCYLSPKCVKCGGQHLTDVCSLPRKMELNDQNNSKSKLKCANCGGSHTANFQGCPSRKKFLDELEKRKKKPVRQPAPNHTSREAFPSLGQQRSGPRTSNFPAGHRTYAQVSATSLPPAPDVDAEGEGLFSISEFLALARDMFARLSGCRSKLQQFNALAELMVKYIYHG
>Jockey-7_CQ_pol#LINE/Jockey 1373-4042  [Culex quinquefasciatus]
MANLNQLKIVNWNGRSVLPKKLEFFDFLSRHHIDIATVSETWLKPKQSFFHPDYRCVRADRENQDDERGGGVLIAIRKDIHFKILDINTSAIETVGIEILNAAQPVHIIAVYFPGVHRGSTWTTFKRDINTLVRRTVPFFVAGDLNARHRQWNCLRANKAGNILASRASSSDFFIHAPLTHSYHPKGGRRPSTLDLVLSNNFVDMSSLTVVNDLSSDHLPVRFDVNISVPFNQTXPATRCYSRANWQVFQRVLNEKIDLTSPLVTNLESPEAIDRCIAMFTSFIIEAESTAVPTAPVRSYKEAEFAESTRRLVQLRNTRRRQWFRTRDPLLADIVEALNVRIRNECTIARNQHFSNSIRHLENGAKDMWRISKALRNSVKYTPPLKNGDSLVAAPSEKANLLADSFANAHRNTLPSEPSVIAQVEESVAHITATDSTTAAAPVVRPKELQRIIQSLKPKKAPGLDKVGNIVLKRLPRKGIVVLTKIVNACLALSYFPSSWKHAIVRGIPKAGKDVTLPSNYRPISLLPTMSKILERVILSRIESHLESRTVIPRQQFGFKRGHSTNHQLVRLTQSIQQSFARGQSVGMILLDVEKAYDSVWQDAILHKMKLAGFPQYILKLLHSFLKNRSFQVIVDGELSRPQLIPFGVPQGAVLSPILYNIFTSDVVMVNGVEYYMFADDTGFASADKHPEIIIEKLQSAQNKLEDYQRRWKIKINPAKTQAIFFTRRRSERFLPQSQVVSMGHAVPWSEQVKYLGLEFDPKLKFDKHVAASLEKCSKLTRMLYPLVSRRSRLSSRNKILLYKLIFRPTLSYGFPAWHGCAQSRRKKLQVRQNKLLKMMLDLPFNFPTAELEDASGVEELDSWTSRLLRNFWTRCSMSENDLIVNLVP
>Jockey-8_CQ_gag#LINE/Jockey 44-1387  [Culex quinquefasciatus]
MGKKKPKPPPDDVPGVKKSTQHTFDRRDYGPKLKTNPTLDTEVKKLAAAGHGYSLRRRASYSDLTSTRNRNTWAGASTQPIPLANGFDTLQSMDDDDFSSISGDSIPGVVDIRVKKTTKARCPPITVRNMSAIEINKLISRLGGGGGNYSIRNFEKAVQIKVKCADLFQKITAELVQLNAEFFTHAKPEDALVKIVLSGLPVFEVDDLIEELEKNDIFPREVKVLSKSEGGNRALYLLNFLKGSVKLTQLREVKTIYNVVVWWRFYTRNKTDVMQCFRCQGFGHGSRYCNMTPRCVKCGQKHGSNECQLPTKAELEKAPDDVRQKIRCANCNLNHTANFKECTARKDYLKHQEKKKPRKASPQAEKASPSSRKFTSNVVAPGLSFANIAAGPGTGSPPGAAPNDDLFSITEFLGLAREMYARLSKCTTREEQFFALHELMVKYIYVH
>Jockey-8_CQ_pol#LINE/Jockey 1371-4055  [Culex quinquefasciatus]
IFTFTSLTKLKVLNWNGRSVPKKALELSEFIVSQKIDVAVLTETWLQGNVSFFIDGYSVVRLDRPTDAAERGGGVALLVKRGIGFKPMDNLRTKVIEAVGVRVQTEGDPINIIAAYFPGGRSKEDRVNFKRDIGTLTRQSGAYFIVGDLNSRHRMWNCTRANQTGNILMNLFRTSDFFIHAPTTPTYVPRGRARPSVIDLVLSNNRVNMSVPKVHQELSSDHLPVTFEIDCIIQAETQAKRVRCYDRADWVRFQRDVGGKLDXTVESLNNIQTTAEIDASVRRFTSAVLEAEDVAVPWAEYNPQKVVLPDGLRLLITLRNTRRRQFIRSRDPVLGLIVDTLNQRIQKECSKLKYKNFGDTVRDIANGHKKFWKISKLVRNKVKHNPPFRIDDGLVISPAEKARVLAESFAKAHDNTLPGDPSVNDEVARSMSVVAEANESNDDWSTYTKPSEIKAIFRKLKNRKAPGQDGLRNITLKHLPRKGLIYLTKIYNACLKLSYFPAAWKHALVVAVPKPNKDITQPGNYRPISLLSTLSKVLERIVLARMNXHLDNNRIVPDEQFGFRRAHSTNHQLVRIAQAVKKGFDSKKSTGMLMLDVEKAYDTVWQEAIVHKLVVANFPLYLVKMLHSFLKGRSFQVNVNGALSAIHGIPCGVPQGSVLSPTLYNIFTADVLMIDGVSYAFFADDTGFFATDNDPKIVTIKLQAAQNRLEEFQQKWRIKINPSKTQAIFFTRRRAPKYLPSSKVKVCGLEVDWSKEAKYLGFVLDTGLRYDKHIDQTLKKCKNLTKALYSLVNRRSRLQLHNKLLLYKCVFRAVLTYGSPTWKTCAATHRKKLQRMQNKLLKMIYNLDPWHPTDDLHQLAELETIDQFIDRLFQKFRTSCQMSDNPLIEAILPL
>Jockey-N1_CQ_gag#LINE/Jockey 75-1298  [Culex quinquefasciatus]
MPHGKKKRRSSPAGSADLKKLKNAEALPAKPGSLSKDAQNSSGNQFATLPVDVSEKEEFERREKLPPIFVKTSSSDSVRKWLTGFIKSGALRASIRLCADGLKILLPTRKDYNYVRDFLNNTKIEYYSHDDPGKRPMKQVLRGLYDMDVSVLKEELKTLKLNVIEVFKMTRHNKDIKYRDQLYLVHLEKGSTTPSELKAVRAIFNIIVTWERYRPVHRDVTQCSNCLQFGHGGRNCFIKSRCATCGGEHKTQACETINENIEAKCFNCGGDHSTKNRSCPKRAEFVKIRQQATTRHQPNRRKTPPTFTDVDFPALASPGAGSVRVVPNLQPLPLNQRQKVAENTTPPGFSQQPRENQPASTDEGSSDLFSPQELLNIFIEMTTTLRGCKTRAEQVRTLGGFILKYSS
>Jockey-N2_CQ_gag#LINE/Jockey 114-1520  [Culex quinquefasciatus]
MPKAGRGRGSSSAASKNPRSSSTGRVQKGKQTNAVSAAIAQGSVSADGIDKKYLHPGYVPRSPVRTRSGTSGATTSGTSTSANIPIRNEFQMLSDDEENNNTDGSSTTDDDDDDGRARKKVSTPKKNNSPKERRPPPIFVLDTLADDVDELLEGLGYCLKIGKSSVQVYTFDEKNFDLVVEKLKRQNFKFYTFDPVQKTAVKVVLQGYQDRPISDLKKDLSGAGITPRDIKVLSRKTTVTGTHTLYLLYFDRGTVKIQDLRRTKALDGFWVNWRFYSKNPSDAAQCHRCQKFGHGSRNCNLPPRCVKCGESHLSEACALPCKADLGDKAEQTKARIKCANCGGNHTSNYRGCSARKNYLEEQEKRKKKAAASHPPQRSTSETVPAAGHRTVPADNSAFPPGWGRSFASVVAAGSGNTAQQEVTGEDLFTLPEFFALAGEMMTRFRTCRNKAEQFLALGELMIKHIYKG
>Jockey-N3_CQ_gag#LINE/Jockey 534-1487  [Culex quinquefasciatus]
MSTCDVQPEHKLTRYGTKITCFSSDDFDTVQAHLKKNKVQFYTHGKRSARPHRVVMRGLPNAEPDYVKELLKTEHQLDVLAVHAIRRKQQLPAIDETPFIVLFPKGHTSLKELSSKVKKVGPVVVRWVAYRNKEPHVTQCKNCLQFGHGTSNCHLKPRCSSCGGAHSTEKCKAEETEAKKCVNCSGSHEGLDRSCPKRAQFIQSRQQASKPKPPAWKKDKQTPAGAAFTAADFPPLPGAVPSVGTEEKHPRPAGRSRENTGAGAGATPKEQQGERKLYSESELWAIYREYRVRLRQCKTPEEQIDVIAHLLTHGAGK
>Jockey-N4_CQ_gag#LINE/Jockey 110-1552  [Culex quinquefasciatus]
MPKSGRGRGSSSAASKHSRSSSAGRVQKGGKQTIAKTTAIAKTSDSVIDKNLLHPEYRPRGISPRGFSPRSPVRTRGRVAAGSSQVNVPKLDGNKSTGGITISNPYEPLSGEEEEDGETTSDDDDDNSNIPESSAKEKNKTRSQERRPPPIYCLGHLADDIDELLEGNKYSLKLGKTAVQVITLDKKSFADVIATLKANGIRHYTFNHADDVPVKVVLGGYMDRPISQLEEHLQNAKVRPREIKVLSRKTTETGTHTLYLLYFNRGTVKIQDLRRIKTLDGFWVNWRFYSKHPNDAAQCHRCQKYGHGSRHCNLQPRCVKCGGTHLSEVCSLPRKVDLGDDAAQTKPRIKCANCEGNHTSNYRGCSARKAYIEDQEKRKKKPAASRPPHRSTSTTVPAAGQRTVPSNNSASPPGWGRSFASVVAGSGDSAQQEITGEDLFTLPEFFTLAGEMLTRFKACRNKAEQFMALGELMIKYIYTR
>Jockey-N5_CQ_gag#LINE/Jockey 115-1569  [Culex quinquefasciatus]
MPKRGARHGNSSAAPGTSRNPSPGRITKNNPANSQIKPSTAATALEGIDKTKLHPHYRSPYQLRVKTAKAGRQASGVPSVTPVPTRNEFEPLSGDDEDNEDDCSTSSSDDDDDPARGSKKAETSKTAAKERRPPPIFVVDTLADHVDELLEGQTYCLKIGKKNVQVITLLRANYDKVLMVLKTHNVKYFTFDPAETVPVKIVLQGYTDRPVEDLAGHLADVNVHPRDIKVLSRTTTVTGTHVLYLLYFDRGTVKLQDLRRKKTLDGFWVTWRYFSKNSTDAAQCHRCQKFGHGSRNCNLPPRCVKCGEMHFTEKCKLPQKARLSESDAQQHRSRVKCANCDGNHTANFRGCAARKAYLEEQAKKKKKLPATRPPPRLSPTVPVAGQGAADRITPAIPPGWGGSYASVTAASGTVPEQAAVSGDDLFTLPEFFALAGEMLTRFRACRNKAEQFMALGELMIKYVIQRISCLVQRCSSASTDKIIL
>Jockey-N6B_CQ_gag#LINE/Jockey 80-1318  [Culex quinquefasciatus]
MEVEESSEEEDFRPVRGNRKRKKSSEVTGIGIEGEKVEKTLLNNNKFSPLADNKNNNNASPAGGGDAPAVPPPGQSAGKQKQPPLVVKNTTDFYKLVAIVESCKLGFKPIYKLTRFGTKVTCFSVKDFDKLQELLKKKKVEFYTHDRRSERNHRVVLRGFPDELKPDEVKYLLKRDLKLDALEVHIIKRKEKSTVDETPYIVVFPKGYTNLKKLSAMKVVASTIIRWEAYRNKRPNVTQCRNCLQLGHGTRNCHLKGRCNNCGGPHKTDECKVQEAEPKRCANCSGAHEATDRSCPKRADFIRRRQQASKPKPPARKAEKQSPAVPAFTPAEFPPLPGAVPDGKSKDRPRPAGSSQGGPRDGGATEKEAGEVLYSSAELWGIFSEYIGRFKTCKTRLDQVTLVSYMISKYGI
>Jockey-N6C_CQ_gag#LINE/Jockey 68-1288  [Culex quinquefasciatus]
MEVEESSDGDEFRPVDGTRKRRKTSDDGAVVGNGXEEHLLNNNKFSPLAENNNNNNNNGNPAGKGSVPPVPVVPVAKKPPPLVVKNTSXAKLRSVMSPCTTKPSYKLTPFGIKLLCSSEERFETARAHLIANKVEFYTHEKRSERQLRVVVRGLPPASPEFVKKXLKESXNLDAVEVHAIKRKGEFASSEETPYIVTFPKGYTNLKQLSEIKXLRAFHIRWEAYRNKRPNVTQCRNCLQLGHGTRNCHLKGRCNNCGGPHKTDECEVQEAQPKRCANCSGAHEATDRSCPKRADFIRRRQQASKPKPPARKAEKQSPAVPAFTPAEFPPLPGAVPDGKSKDRPRPAGSSQGGSRDGGATEEEAGEVLYSSAELWGIFSEYIGRFKTCKTRLDQVTLVSYMISKYGI
>Jockey-N6_CQ_gag#LINE/Jockey 80-1354  [Culex quinquefasciatus]
MEVEESSEEEDFXPVRGNRKRKKTSEVTGXVIEXEKVEKTLLNSNKFSALAGDKNNNNASAAGGGDAPAVPEPRKSAGKQKQPPLVVTNLGFNRFLDLMALCKVKPEYKLTRSGIKVTCFSVEEFNTVRELLLEYKVQFYSHDRRSERSHRVVLRGLPEVDVEIIKDRLKEDHNLDVLDVKAIKRKEKSTAGETPYIVFFPKGHTNLKKLSAIKKMGPVIVRWEAYRNEQPNVTQCRNCLRLGHGARNCYLKSRCNNCGRFHKTEHCKVEVTQPKKCANCSGSHEGLDRSCPKRAQFIQSRQQASKPKPPAWXKDKQSPVVPSFSAADFPPLPVPVPIPDKLKKTEPQSAADAGSSRGNTGPGAGGQPKAIGEEVLYSTEELWKMFXGELWKMFYEFTARLRSCKTRSDQERVVGTMSRKFGAD
>Jockey-N7_CQ_gag#LINE/Jockey 113-1510  [Culex quinquefasciatus]
MGRNTRGRGSSSAPRGRGRASSCSSIGKTSSSGSKRSTNLLKLPSNYVPARSPIRTRGLAALANPDQPGTSGLSTNKPGTSSTAVPTSNGFAALSDDNKEDDDDDVSGGDGVTTTPSQAKGTSTAGEQEXKKSNKKMPPITVPGRPAVEIEGALADADCQYLMRINKSSVNIITRDRPRFEKVLKTLKDANIQYYTHDSPENLPVKVVVTGFSILVPPKEFVDVILAKKNIYPREAKVLSHKVTEVGDQILWLLYFERGSVKIQDLRKVKSLEGFMVSWRYFSKRPSDAAQCHRCQRFGHGSRNCTLAPKCVKCSAAHLTAACTLPKKASLGKDNQAEQNKRNVKCANCDGNHTANYRGCTARKTYLEALEKRKKPAPHSSRTSTGQPSTEPRQTNPPGFGRTYASVAATANGPTPDSNSDGDLFTLTEFLSLARDMFTRLNTCRNKLEQFFALQELMGKYLCPA
>Jockey-N8_CQ_gag#LINE/Jockey 112-1554  [Culex quinquefasciatus]
MPRAGRGRGSSSAASKNPRSSSTGRVQKGKHTNAASTAIAHGSVPGDVTDPSFLHVSYRPRESPVRTRQSTRASGSTSDQQQQQQSTSTTTTTTSNVPTSNEFEMLSGEENNTASDSSSAGDDDDDDELARKQGKQKKCNSPKERRPPPIFVLDTLADDVDELLEGLQYCLKISKTSVQVITHKKQNFDLVVKKLKLRNFKFFTFDPAEKVPVKIVLQGYPDRPISDLEEHLSGVKVKPREVKVLSKSTTVTGTYTLYLLYFDRGSVKIQDLRQIKALDGFFVTWRFYTKNPTDAAQCHRCQKFGHGSRNCNLPPRCVKCGETHFTERCNLPRKDQLGENAQQHKARVKCANCGGNHTANFRGCAARKKYLEEQDKKKKAPASRQPPKTSSTNAAAAGGGAVPSTNPAFPPGWGGSYARVAASGSGTSPGQADVTGDDLFTLPEFFALAGEMLTRFRACRNKAEQFQALSELMMKYIYNG
>Jockey_Ele2_gag#LINE/Jockey 178-1533  [Aedes aegypti]
MIRKNYDKSKVRITSTQTEISTMVDNDLLTANVQQRRRHNSTDENSMRPRNQSSDSGHQFSSQPIAGCSNANNVLIAVPNVPTENPFDTLMDNEELQERVTPQQSASKIHCPPIFVQNGTVKDINKLMSSLEVGEKNYAQKIIKGGIRLHVKEKTKFTVVVAALKSENVKFFTHGTSDEVPIRIVLAGLPVLDLEEVREELKQANVLPVEVKLLYSSKDEDSALYLLKFPKGAVKLKELQKIKMLFNVVVSWRFFSRRIGEVIQCYRCQKFGHGMRNCNMDAKCVKCGELHLTKDCTLPPRRATDDRSKIRCANCSQNHTSSYKGCPARKNHIQENEEKKKMQSSRRRDAPASSHAPGGRSFRSTFVTPSKSFADAIKDGSSATVVAAAAVAVDGAAGGGGYAGPDQSELFSLHEFMNLASDLFTRLSSCKTKAQQFLALSELMIKYVYNG
>Jockey_Ele2_pol#LINE/Jockey 1517-4198  [Aedes aegypti]
MCTMDNTTSLNILNWNSRSIRNKESEFFNLLDNQNIDIAVVTETWLRPDISIYHHDYTCTRLDRSSSEATRGGGVAIFIRKGIKFTQSGGLNTNVIEALQVTVHTDATPIHLVAAYFPGSSNLSTLNKFKRDLRTITGFSEPFFVIGDFNARHRYWNCQKMNKAGEILFREYETSDFFIHFPAGFTRMAPNGRSTSTLDLVLSGNSMDMSVPETIQDLSSDHFPVMFTINADTPFKNEFRQYRNYKRANWTVYVNSVSRSLDLTSDVINNLDTEDKIDTAIETLVTTLVEAERVSVPVVNCNPQKRDLPDRIKLLIRLRNVRRRQYCRTRDPLLRTIVENLNLQIRNESATYKFRNFGTTIRNLANGSSKFWKISKNLRNKIKYQPPLRCGNRLMVSDAEKANTLAEHFASSHNNQLRSDPETTSEVHRAMEDLESHALHNIDVATFTKPSEIKKIIQRLKSKKAPGQDGIRNAMLKRLPRKGLVYLTKVFNACLKLTYFPEKWKHANVVAIPKANKDVTLPTNYRPISLLSSLSKILERLILNRLNRHLEANPVVPNEQFGFKNGHSTNHQLARITRLVKQGFSAKKSSGMILLDVEKAYDSVWQEAIIFKLQKANCPLYLVKLIKSFLLGRSFAVSVNGCTSGVHRIPCGVPQGSVLSPTLYNIFTSDVLIVDGVTYAFFADDTAFLATDDDPKIVTCKLQHAQNKLQEFQHKWRIKTNATKSQAIFFTRRRSPRFLPTAEINVNGSNIPWKAEVEYLGLTLDQKLLFDKHINRAINKANCLSRSLYSLINRRSPLQIANKLLLYKCVFRPVLTYGCPVWGNCALSHLRRLQVKQNKLLKMMLDLSPWYCTEEVHEIAEIETIFRFVEKAAERFRLSCEMSNNPLIVAIFP
>Jockey_Ele3_gag#LINE/Jockey 233-1513  [Aedes aegypti]
MAEYVNKTLTHPTSASKSPTRVRSLDRISGQSMAYANTDACTSELDFTEGDGDTVASPFISPNQFEPLSDDDEGELPSASAQSKKPSKVRLPPIFIMDSTISDIFKLLKDCSTPQSEDFLLKRNKSSVQLLTKSKDVFDKTISTLKSKNVPFFTHGTSDNVPAKFVLSGLPLAELSKLKDELTRVNINPSDVKVLSTTKTSQDTYALYVLYFPRGSVKIQDLRKTKALFNVAVSWRFYEKRADDAAQCYRCQRFGHGSTNCNLAPKCVKCGGKHLTDGCTLPKKANLSSKQNDRSLLKCANCGANHTANFRGCPTRKAYLENLEKRKTKPVQRPPRMTNDDFPSLVGQGTALHRTSPNAKGRATYAQISANTPLATSANHCNENLFTISEFLCLARDMFARLSGCRTKEQQFFALSELMIKYLYHG
>Jockey_Ele3_pol#LINE/Jockey 1506-4181  [Aedes aegypti]
MGDLTKLNIVNWNSRSILPKRIEFFDFLNQHQIDVATVTETWLSPKNSFHHPEYHCIRSDRRSNNNERGGGVLIAIKKGIKFSQLDLTTGAIETVGIEIQNAAQPIHIIAAYFPGGHRGTSWNTFRRDIDNLVRRPEPFFVAGDFNARHRQWNCLRANKAGNILASRASSSDFFIHAPSAFTYNPQNGRRPSTLDLVLSNNLVNMSTVSVVNDLSSDHLPGRFDIDLIAPVITVTSTSRCYARANWQLYKRLVNEKIDLTAGVINNLNCSAAIDNSILLLTTTLKEAEAIAVPNVPTKMYKDVKVSNSTRQLIQLRNVRRRQWIRTRDPLMLMIVESLNNRIREECMSERNRQFSRTISNLENGAKDVWKISKALRKTVKYSPPLHQIDTNTLISSPSEKANLLAECFASTHRNPLPSDDQTAIAVEESCTLIANTATAVNDVPMIRPREIEKIIKSMKQKKAPGKDKIRNALLKNLPRKGLVMLTKIINACLRNSYFPKVWKHAVVTAIPKPGKDITLPANYRPISLLPSMSKILERVILSRIEGHLEGHNIIPAQQFGFKRGHSTSHQLVRLTQFIKTAFTSGKSAGMVLLDVEKAYDSVWQDAILHKMRTANFPLYILKLLQSFLKERSFQVIVKGELSHVQQIPYGVPQGAVLSPILYNIFTSDMVMVNGVEYFLFADDTGFVAVDKKAEVVIEKLQTAQKAIEDYQRQWRIRINPSKTQAIFFTRRRNQRFLPQTQLTAMHHTVPWSDEAKYLGLVMDKKLKFDKHIASILGKCDKLIKMLYPLICRRSRLNSVNKILIYKMIFRPIITYGFPAWHSCAQSRRMKLQVKQNKILKMMLDLPFNFSSDELQEVSHTEHLGSWTTKLLQKFWTGCTISENDLIVNLVP
>Jockey_Ele5_gag#LINE/Jockey 87-1340  [Aedes aegypti]
MGRKRKVRNGKPADITASTPEQSXTRKKRQVDEISLQETILSRNRYSTGGTAVNDSDLGDFGDVPDEQQQQQQRDPPGKIPPLMVKSVGLSKLQATMKALNISAMYKLCRIGVKVILNCKEDYQKAKAYLVRSKAEFFSFDMPSEKPFKAVIRGLCDMEPEAIKMELENRYKLKPLAVFPMNRHDRKRVYRDALYLVHFKKGTVTLGALKAARAVNDVIITWEAYRGANRDVTQCMRCLHFGHGARNCNVTPRCGVCTQQHETRDCPIEEVVDYKCANCGGNHRATDRTCEKRAEYKRIRMQASSQNQPRRRMKEAPKFSEENFPPIPSQAGGRPSERQAGTDTPPPGLSYRDRLCQRGTSIFQPQQSNAAPHDNSAPLLTPEQLLPIFHDMWQQMQQCRTRADQILCLGEFIIRHG
>Jockey_Ele5_pol#LINE/Jockey 1333-3984  [Aedes aegypti]
MANGLKVLLWNAHSVKPKDVELLDLAEREEAQVITITETHLKPGVNFCLPGYNTVRLDRTATNGGGVAIAVKQPIKFVIQPDYRTSVIEAVGVEIATPDGPLLVIAAYCPQQCYEGSGKARQFKNDLVKLTRHRKKFIVACDLNAKHEAWGNHRRNRNGNLLFDESQLGYFVVNAPKDPTFLSPAGIPACLDFFLTNMEVPLPTTINELSSDHLPVLLRVGGDAEREQRRTRKDYHRVNWVVFQRKVDSRVDAEVQLDTVEDIDLAVENLQAAIVAAESECVPRVQIVSSQLQFDPELRSIMRARNVFRRQFQRTGDLSKKSQANYLTKIIALRVQEMRNDRFERDVRRMDPFSRPFWKVAKILKSKPQQIPPLKCDENLLVSPLEKANAIASSFSKNHLIGSHLVSPMEQAVSDTLLTLNNTPCYVPDNKKISVEEVSAAIKGAKNMKAPGFDTLFNLVLKNLSVSALSHIANIFNRCLDLNYFPNCWKLAKVVPILKPGKDPTSPKSYRPISLLSALSKLFEKVILNRVLDHVNNNNILLQEQFGFRKGHSTSHQLYRVTNIINKNKSVAKSTVMGLLDVEKAFDNVWHDGLVYKLYRYNFPNYLIKIIQHYLKDRQFRVALSGELSDSLQIPAGVPQGSLLGPILYSIYTSDVPQLPDGCYLSLFADDTAIMVKGRNTRTTVKKLQECLNSFQQYASLWKIKLNAAKTQVIVFPYNRSPKLLPPDDCKIVMDGVSIDWSTDVLYLGLTIDQKLLFRSHVEKTKTKCNKIVKALYPLINRRSKLCLKNKIAIFKQIISPVIDYAMPVWQSTAMSHRKTLQIVQNKALKMILNVPYHTKNTEVHDIAGVQMLDQKIIANFDKFKAKCQQSEYAMINTLFQQN
>Jockey_Ele7_gag#LINE/Jockey 529-1788  [Aedes aegypti]
MGRNRKQKADSASIPAPLADSGQTSAPKRARNEDANPAAYNSRLLASNQFASLPVDQVPQKAKVAPLFAATTDIAALRTELAALNIKPLFKLCHTGTKVMCDSRNDYEKAGKLLKAKGLEFYTHDAPGSKPLKVIIRGLPEYTPEAIIEEMVSAGLKPTSVFPIRRAQGGRHRDQLYLAHLEKGSTTMAGLTRVRALFHIVVEWERYRPKKRDVTQCGNCLALGHGTRNCHMKPRCGKCAGAHATTTCQPMEGTEPKCANCGANHEGSSRNCPKRAEFLAIRQQASAKKLGRQRQRQPPPPLTEEHFPTPRYQVPNLPPLQPTHRQASRQSAPSVQQRLAAAAAAPSVRNAPPPGWGNPGPSASGTPPPSDDDGSLYTPEQMLEYTRNLFQRLRACRSKSEQIDAANSVVFAFLSKYGP
>Jockey_Ele7_pol#LINE/Jockey 1778-4450  [Aedes aegypti]
MAREAITRIANWNACSLRNKAIELVEFLEEKTIDIAIITETHLKPELSVSIPNYRLVRLDRTDSEGGGVAIALRHNMNCRLLPSLQLKLIEAVGVEVQASDGPITIIAAYYPTQASLNDGSATALRQDITKLTRRHGRYIIAGDLNAKHEAWGNPRRNRNGVILQQGLEEGHFNILGPDTPTRLSRSGAHAFIDLFITNMVSISHPVVYQELSSDHYPVVVEVGSSVNRHLKTRRNYRRVNWDQFRQCVDTHVDYEVRPESTDDVDRQLQAIEEAISQAREQHVPATSQVSNNIPIDRLTKDLIRLRNTIRRQYQRTGLPALKSDVNRMNKIIKARMLDLRNQNFSNKIRALPDCAQPFWKLTKILKTKPRPIPPLVPQDNNSPVDRLITPAEKAAEIGRHFVSSHNLGHNIISPHEAAVNEHANNHHLIPNDFSEELEITADELSTYLKHSKNMKAPGFDNIMNLELKHLSVQFYDHLAVIFNQCLRLSYFPSSWKSAKVVPIRKPGKDPSSPKSYRPISLLSALSKLFERAVYRRLLASVEQNNILLDEQFGFRRGRSTVHQLSRVTNILRRNKSLSKTSAMALLDVEKAFDNVWHDGLVFKLQRYNLPSYLVKIVHNYLSARTFRVSLNGAISDAHDIIAGVPQGSILGPLLFNLFTSDMPALPGGGALSLFADDTSIVYSGRRIRALTAKLQRGLDVLTEYLTSWKICINAAKTQVILFPHSRSPRLVPAEDCKITLNGTAVEWSNEADYLGLTLDSKLIFRQQVDKTVTRCSTMLRMLYPLTNRRSTLSQKNKLAVYKQIIRPVIEYGIPVWESCAKSHHLKLQRVQNKFLRMALNAPRRMRNSEVLRLAEIQTLEDRFSESIGRYRARCRTSDQQVVRAIVAPP
>Jockey_Ele8_gag#LINE/Jockey 205-1458  [Aedes aegypti]
MGRNRKQKADSASIPAPLADSGQTSAPKRARNEDANPAAYSRLLANNQFASLPVDQAPPGAKVPPLFTASKDLSALRSELAANNIRPLFKLCHTGTKIMCASGADYDKAGKLLKAKGVEFYTHDAPGSKPLKVLVRGLPEFTPEAIVDEMKAAGLKPTNVFPIRRAQGGRHRDQLYLAHLEKGSTTMAGLTRVRALFNIVVEWERYRPKKRDVTQCGNCLAFGHGTRNCHMKPRCGKCAGAHATTTCQPMEEGIEPKCANCGANHEGSSRNCPKRAEFLAIRQQASAKKLGRQRQRQPPPPLTEEHFPTPRYQVPNLPPLQPTHRQASRQPAPSVQHRLAAAAAAPPVQNAPPPGWGNPGRSAPGTPPSDDGSLYTPEQMLEYTRDLFQRLRACRSKSEQINAANSVVFAFLAKYGP
>Jockey_Ele8_pol#LINE/Jockey 1448-4120  [Aedes aegypti]
MAREATTKILNWNACSLRSKNRELSAFLDQEGIDIAVITETHLKPEVNIFIPDFRLVRLDRCGSEGGGVAVALRRNVNCTLLPSFQLQVIEAVGVRVETSIGPITIIAAYCPKQTNINDGTSAALKQDIVKLTRRQGQFILAGDLNARHETWGNPRRNRNGLILQQDLEEGHYTILSPDSPTRLSRSGAHATIDIFLTNMADNISQPVVHQDLSSDHYPVVAEVGSLVNRHRVTRRNYHRVDWGQFQRCVDANIQYEAPLASAEDIDRHLQSVEEAISVAREQHVPASGQVSNTLFIDRVTKDLIRLRNTKRRQYQRSGLPALKSEVNRISKIIKARMVDLRNDDFSNKIRSLPDCARPFWKMTKLLKSKPRPIPPLIPLDNTDSKDRLITPAEKAAEIGRHFVSSHNLGLDIPSPHEAAVSEHAANLHRSPNDFSEELEITADELLAYLKTSKNMKAPGFDNILNLELKQLSLQFYQHLALIFNQCLRLSYFPSSWKSAKVIPIKKPGKDPSSPKSYRPISLLSGLSKLFEKAINRRLLSAADQNNILLEEQFGFRRGRSTVHQLTRVTNILRRNKSLAKSSAMALLDVEKAFDNVWHDGLVYKLHRYNLPTYLVKIIKNYLFNRTFRVSLNGVNSDPHNIPAGVPQGSILGPLLYNLFTSDMPQLPEGGSLSLFADDTSVVYSGRFTRALTSRLQRGLNVLSDYLNSWKICINAAKTQVILFPYSKSPRLVPAEDCKITLGGSTVEWSDAADYLGLTLDSKLLFRQQVDKTVTKSNILLKALYPLINRKSTLSLKNKLAVYKQVILPVIEYGVPIWESCAKTHHLRLQRTQNKFLRMILNSPPRTRTTEVHRLAEIKTLEERFGDSIGRFRARCHQSGQQVIRDLVPP
>Jockey_Ele10_gag#LINE/Jockey 309-1448  [Aedes aegypti]
MEIGPSIQPMVATQNLFETLSTDDPDGNVNNRSQSPLNAPKKNRRPPPITIVSKGTKQSRELMNLANIPQSGYQLKAVKTGTQLNATDEDVFNAVIKVLQDSNTEFFTYTPSHQQPVRFILSGLALYDLAELKEELLLNEVRPLDLKIFSRKKSGPEESVLYLLCFVKGSTKLSELQGVKTLFNTVVKWRFFTRKPDDSVQCHRCQRFGHGMRFCNISPSCVKCGEKHLTANCKLPVKANLKDASVSRSLIRCANCSGNHTANFRGCPCRLSYIKQLEENRQRASKKTTAPNTRAPPTSLPRINSSVQNRLNNPSAAGGPSYSQVLQGSGQPDRRANLFSVSEFLCLARDLFHRLQGCRSKEQQFLALSELIIKYVYNG
>Jockey_Ele10_pol#LINE/Jockey 1441-4116  [Aedes aegypti]
MASLPCLRVVNWNGRSVHSKSLEFFDFVQRHGIDVAVVTETWLRPNTSFLHPNFSCVRLDRPSSDEGGRGGGVLIAVRKGLAFKQLNISTKKIEATGITISSAGNDELCIIAAYFPGTRRGSEWSKFRREIRSLVTQNSPYFVIGDLNARHRSWNCAKNNKAGTILFQEASHSGFNINFPDSPTFIPSGRGHPSTLDIVLSNNLVNMSKPTVHNELSSDHLPVTFEISLSSDPVANTESVRCYARADWLAFQRLINTKLCPNDPMFSNIRDENGVNAALNFFKDALLDAESVAVPLVTPRPYDVAQIPDETKLLIQLRNRRRRQWMRTRDPMLKQIVLSLNDRIRGECANARFSKFSXTLATMERGDNKLWRITKALKKTTKYSPPLRSGDTLFACPKEKAKLLAESFALAHNNQSTSDRDTVEAVERSVEQIDLSPPVADNSWLVRPKEIATIIRNLKPKKAPGHDGIKNMLLKRLPRKGYVVLAKIFSACLKLCYFPDDWKHAIVVAIPKANKDHSIPSNYRPISLLPTLSKLFERVILTRIEKHLETVRLIPHEQFGFQKGHSTSHQIVRLVKEVRRNFQQGKSSGLILLDVEKAYDSVWHEAILHKMLLGNFPMSILKIMRSFLKDRSFQVAVNGCTSDRMSVPFGVPQGSVLSPTLYNIFSADIVKVNGVQYYFFADDTGFLASHRDAGTIIETLQHAQNSIQEYQRKWKVKVNPTKSQAIFFTRRRSPRHLPQSNVSCNGVDIPWSPNVGYLGITLDQKLKFGCHVTNCLQKCDKLVKMLYPLVKRRSRLDPGTKILLYKTVLRPTVAYGFPAWYDCAQSHRNKVQVKQNRLLKMTLDLSPFHPTDDVHRLAGVERIDDWFRRLMPKFLDSCSSSVNPLLQELAA
>Juan-A_gag#LINE/Jockey gi|159575|gb|AAA29355.1| DNA-binding protein [Aedes aegypti]
MVSTTNKRKGESLNSLLPSKKVGFKTVTTRGKNGRKDVSPECELSSKGEMNNCIEMSNQFDALDKFSEHQIEAASSSGSLIQVRKQRVPPIVVSCSEFGGFRQEILNSIRGIKVSFQIAKKGDCRVLPETLKDRELLLKHLEEKKHNFFTYDDKTERLFKVVLKGLSSDYKSPEEIKNGIIDLLGFSPVQVIIMKKRTQSGIVRKGLSQEFYLVHFNKKELNNIKALEKAKLLFDVRVTWEHFQKPGGNYQNPTQCRRCQKWGHGTKNCRMDAKCMICGGSSHTKDVCPVKEDTTKFICCNCGANHKSNFWNCPSRKKVIEARARQMKDNIRYDNGRFRNLPGRVSNNAHFSVNDRLIMNHTHQEDHNHAHSQTNFIPSGSRSNLSTSNVSTHGKSFADIVAGNSNSSPVRSMGTHSTCFKSNGKNPTATGNSASSSAENSNGKSHDMSASDFNFLTEQLNLMIDAMFKATTMTEAVQVGVKFTNQIVIGLRFSNGSK
>Juan-A_pol#LINE/Jockey gi|159574|gb|AAA29354.1|  reverse transcriptase-like protein [Aedes aegypti]
FKYFKLNARSLNGKEDELFNFLTVNNVHIAVITETYLKPGSKLKRDPNFFVYRNDRLDGACGGVAIIIHRRIKHQLFSSFETKVFETLGVSVETQFGKYTFIAAYLPFQCSGQQVNLLQTDLRKLTRNKSKFFVIGDFNAKHRSWNNSQSNSNGRILFDECSSGYFSIQYPDSPTCFSSSRNPSTIDLVLTDSSHLCSQLITHADFDSDHVPVTFQISQEAILNPISSTFNYLRADWNIYKTYVDSNLDVNISLETKLDIDNALETLTNSIVEARSIAIPKCEVKFESVIIDDDLKLLIRLKNVRRRQFQATRDPAMKIIWQDLQKEIKKRFAQLRNKNFENKISQLDPGSKPFWKLSKILKKPQKPIPALKEENKLLLTNCEKAQKLAMQFESAHNFNLGLTSPIENQVTQEFENILNQENVFENAWETYLEEVRTIIKKFKNMKAPGDDGIFYILIKKLPESSLSFLVDIFNKCFQLAYFPDKWKNAKVVPILKPDKNPAEASSYRPISLLSSISKLFEKVILNRMMAHINENSIFANEQFGFRHGHSTTHQLLRVTNLTRANKSEGYSTGLALLDIEKAFDSVWHEGLIVKLKNFNFPTYIVRIIQSYLSNRTLQVNYQNSRSERLPVRAGVPQGSILGPILYNIFTSDLPELPQGCQKSLFADDTGLSAKGRSLRVICSRLQKSLDIFSSYLQKWEISPNASKTQLIIFPHKPKALYLKPSSRHVVTMRGVPINWSDEVKYLGLMLDKNLTFKNHIEGIQAKCNKYIKCLYPLINRKSKLCLKNKLLIFKQIFRPAMLYAVPIWTSCCNTRKKALQRIQNKILKMILRLPPWYSTNELHRISMLKHWNKCQIQSLIISGKNRYNLLLPRLMRYMFRLS
>Juan-C_gag#LINE/Jockey gi|403080|gb|AAA28290.1| DNA-binding protein  [Culex pipiens]
MRQNKGKRKSSEDLVVTSVKRLNRKPANANRKRKQPLLRSDSDSECEVNPPIPLTNSFGVLSETDDKEPSPRTEPSAVEKRVKAPPIVVTSVSDLASFRTQLKNCKETCNLKVSFQLGRRGECRLLTESLQDHQTFVGYLKNHKHNFYTYETKNARPFKAVLKGLSNDLSVDEIKNELKVLLGFAPSQVIPMKKKSNGNISRFGLTSQFYLIHFNRNEINNLKILDKVQFLFHVRVKWEHFKKHGGNGQNLTQCRGCQAFGHGTDHCAMVPKCMVCGDSSHDKDNCPVKEVTQFKCANCGGNHKSNFWDCPIRKKVLDSRAKHQPKSKPKFSQSQVVPASLNQTFVLSHSNNSRNTPTVEKLGNNNGISYANVVSGSSTNFKSSTNLSEIGQVPQISFENFSAGNALGSSDLGDVTFEKMTFLQNSLFGLIQTMSNATSMMEAIQIGLKFANDVVLTLKFNHGSK
>JuanC_pol#LINE/Jockey gi|1079026|pir||B56679  probable reverse transcriptase - house mosquito [Culex pipiens]
MDQSNSINIMNFNARSLKAKENEFFNFLRVHNVHVAVITETFLKTGTYLKSDPDYKVRTNNRMNRNGGGVAIVIHRSITYSTLRYFKLKVIESLGIELETSFGKIIIAAAYLPFQCTGENKNYFKGDLNKLTRHRSRFLIIGDFNAKHQSWNNSKVNSNGKILFRDCTSGLYSVLYPNGPTCFSSVRNPSTIDLVLTNQSQYCGPLVTHADFDSDHLPVTFSLSHEAVTRPNSSVFNYHKANWDRYQHHIENNFNHDFVLETKADIDSALESLTNAILDARNIAIPKVQVKFDSPIIDDDLQLLIRLKNVRRRQYQRSRDPALKRIQKDLQKVIDHRFTLLRNEKFARDVEQIKPYSKPFWKLSKVLKKPQKPIPSLKDGDNILLTNGEKAQKLAQQFESAHNFNLNVLSPIENQISIEFQNIVEQEFSSDEVFNTDLNEIKSIIKQFKNMKAPGEDGIFYILIKKLPEANLSCLVKIFNKCFDLAYFPSSWKNAKVIPILKPDKNPAEASSYRPISLLSSISKLFERIILNRMMTHINENSIFADEQFGFRLGHSTTHQLLRVSNLIRSNKSEGYSTAPALLDIEKAFDSVWHKGLIAKLKRFNFPIYIVKIIQNYLTDRTLQVCYQNSKSDQLPVRAGVPQGSILGPILYNIFTSDLPDLPPGCQKSLFADDTSISAKARSLRVITRRLQKSLDIFNSYLKEWKITPNVLSKTQLIIFPHKPRADFLKPKSHHIIKMNEVNLKWEDQVKYLGLGFDKNLTYKDHIESIQVKCNKYIKCLYPLINRNSRLCLKNKLLIYKQIFRPAMLYAVPIWTSCCLTRKKKLQRIQNKILKMIPKLPPWFSTSELHQLAEVDTLDVMSNKIIDAFRQKSLQSSAALIRSLYSL
>L1BM_pol#LINE/Jockey 564-3185 via tfasty with BMC1_pol, 7 frameshifts and 4 stopcodons. [Bombyx mori]
MAQKGREKPYSLTPIILCVYxVGIQGVILQFNSLAFYNANGLARQRIQIFEFLRDNLVDILLVQETCLKPSRRDPKVANYVMVRNDRLTASKGGTAIYYRRALHVVPLDTPSLSHIEASVCRISLTGHQPIVIASVYLPPDKPLLSSDIESLFGMGDSVILAGDLNCHHTRWNCHRTNVNGRRLDAFIDDLTFEIVGPPTPTCYSYNIALRPSTIDLALLRNVTLRLRSIEAMSELDSDHRPVVMQLGRPHNPVTVTRTMVDWNKLGTCLADAAPPILPYGPDSNPSPEDTVESINIITDHISSAIIRSSKEVDVEDSFHRIRLSPDLRNLLRVRNAAIWAYDRLPTHSNRIQMRRLQREVHSRLSDARNDNWHSYLEQLAPSHQAYWRLARTLKSETTATMPPLLRPSGQPPAFDDDYKAELLAxLLQEQCTTSPRHADPEHTELVDREVERRASLPPSDALPPITTDEVRDAIHNLQPRKAPGSDGIHNRALKILPVQLIAMLATILNAAMTHCIFPAVWKEADGIGIHKPGKPRNETSSYRPISLLSTIGKIYERLLRKRLWDFVSANKILIDEQFGFRSKHSCVQQVHRLTEHILIGLNRRKQIRPAPLLRHREAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPLLFSLYINDIPRSPETHLALFADDTAIYYSCRKMSLLHRRLQIAVATMGQWFRKWRIDIKPTKSAAVLFKRGRPPNITSSIPTPxxARKYSAVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKTCIRPVMTYASVVFAHSARTHLKSLQVIQSRFC
>LDT1_gag#LINE/Jockey 778-2397 [Lymantria dispar]
PTMAEKTITIDALLAIPEIKAYIAQHFGAITILPPQPKPARSTAQPLEPELPAVGTAMETEPVLSSSNSSSSSSSESEDSSNEGSFIEVRSRKRSKRTKNTKEAPSKTPKIKQTDSATTSAAAPLATTATAAPAPPVVSQAALTAAPPPTDSNTVAPPTVKKSLAPPPLYIRDKDKWLAISAWLNTNRISYKSAKSTPQGIRVDLHSSADHRSVSKMLGNQQIPYHTYTLPEAKLLRAVIRNVPREIETKEILESLKTQDLPVVEVHRMIRGRGRYPLNMILVCLTNNAEGKGIFKIKTICGLSGVSVEPPHKNGNLAQCHKCQLYGQSSKNCFARPRCVKCLGDHHTSQCERPKDISLCKEPPACVLCGEYGHPANYRGCPRAPRRLVRQPNTNGKALYYNKTFVPAPLPTHNAWARPLLNSKEAFPTLPNRQPAAPPATSQLKPPTTGPNQPTGGNPKPPQGAPIPIVVAKSAPPKAPQGLDPDLALVANFAAQINFTEIREIAAELRRNEGNNLALLNTAIKFSPTLERLGSLKFK
>LDT1_pol#LINE/Jockey 2378-5395 gi|3859942|gb|AAC72921.1|   putative endonuclease/reverse transcriptase [Lymantria dispar]
ARLNSNKMDRYTPGRVKPRHLKIGTFNANSLTQQKDEVGTFLREHQLDILLVQETFLKPFNKDPRVANYNIVRNDRTTSPMGGTLIYYKRSLHCTPVDPPPLMYIEASICRLALSGHQPITLVSAYLSPNREHSKQLVEKDLKALLELGGAVIIGGDLNAKNTSWSCQSSNKRGKTLELFADRLGFDVIAPIEPTHFPFNVSHRPDILDIFLLKNINLRLCSIEVQHELDSDHRPVTLELASRTPGPSGHNNERTKIATDWARLEKNLKSTSSVHLDQIPKDITSKEETSQAIDSLTSHVQSIMDDCSRPVPDTSDRKWRLPDDVRDLLRRKNAATRAYDRYPTEDNRTRLRSLQREVKQAIKKLRQSKWDAMIEELEPSHTAFWQLSRSLKKDIVSTLPPLTRPNQPPAFMDDEKSECLADCLELQCTPSTLHPDAANHRFIADEVERRNTLSRSLGNDSPDQPIPAVTTDEVESLVRGLKTRKAPGSDGISNKVIKLFPAHLIILLCCIFNAALNNNIFPAQWKEAVVIGIHKPGKRRTEPSSYRPISLLRGLGKIYERIVLSRLRTFAEANNLVPDAQFGFRAKHSCVQQVHRLVEYTSSQFIMNRYTGVLFLDVAKAFDKVWHEGLIYKLYLLKIPHYLIHIIHDYLSHRSFRYRVEGTLSTSHPIKAGVPQGSVLSPFLFTLYTSDMPKFNRVHKALYADDTALFCAGRSPTTVARTLQTAVTALANWFRNWRLEINPEKSQAVMFTRRTARSYSIDSIPPLKIFNKPVTWTRQAKYLGVTLDDRLSFAPHIKKVRARAAFVMGRLHCLLNSRSRMPLSSKVRLYTTCIRPIMTYASVVFAHVKPHRIHRLQTLQNRFMRRATGAPWFIRNVDLHIDLELPTIKQFMKRCSQSYFDSAMTHPNQLVVGAASYRPSKISSIRRPRHVLDEEDDIITLAQQRAYTAREALTNKYPRFRPRRRGAKPRRAKVTTKNVGTSTLPPATPQAEVRSPQGEPLGDVA
>LINEJ1_DM_gag#LINE/Jockey 300-2051 [Drosophila fruit fly genus]
ISIALYGISIKTIDIMENSFAQSRPSNGCDKFEKMRKVAGVEPGELRSQLRASCAVVSPNLEGMPTQSAVSSLMVTISSNTNASVTCTISNVQANMICTPTYTDCTTVTTSICPTTPYDNGLPTPLSSLPNKPSKANCPFQAHDRTVNRKRKGVSQPPLPILTPSPSRKTKRQATMPLNEEASTSTAAALNNNRFALLSAEAENMEQDVSDADSDIEDSAARDGGGQSAKYSKPPAICVPSVSDPVTLERALNLSTGSSNYYIRISRFGVSRIYTANPDAFRTAVKELNKLNCQFWHHQLKEEKPYRVVLKGIHANVPSSQIEQAFSDHGYEVLNIYCPRKSDWKNIQVNEDDNEATKNFKTRQNLFYINLKQGPNVKESLKITRLGRYRVTVERATRRKELLQCQRCQIFGHSKNYCAQDPICGKCSGPHMTGFALCISDVCLCINCGGDHVSTDKSCPVRAEKAKKLKPRSRLPMTNNIATLKPPQRSSSGYIPAEALRTNISYADIARRNTTQSRARATVQAEVIPTSDNSLNNKFMTLDNSIRAINTRMDELFKLIHETVEANKAFRELVQVLITRIPK
>LINEJ1_DM_pol#LINE/Jockey 2048-4798 [Drosophila fruit fly genus]
MTQPTLKIGLWNARGLTRGSEELRIFLSDHDIDVMLTTETHMRVGQRIYLPGYLMYHAHHPSGNSRGGSAVIIKSRLCHSPLTPISTNDRQIARVHLQTSVGTVTVAAVYLPPAERWIVDDFKSMFAALGNKFIAGGDYNAKHAWWGNPRSCPRGKMLQEVIAHGQYQVLATGEPTFYSYNPLLTPSALDFFITCGYGMGRLDVQTLQELSSDHLPILAVLHATPLKKPQRVRLLAHNADINIFKTHLEQLSEVNMQILEAVDIDNATSLFMSKLSEAAQLAAPRNRHEVEAFRPLQLPSSILALLRLKRRVRKEYARTGDPRMQQIHSRLANCLHKALARRKQAQIDTFLDNLGADASTNYSLWRITKRFKAQPTPKSAIKNPSGGWCRTSLEKTEVFANNLEQRFTPYNYAPESLCRQVEEYLESPFQMSLPLSAVTLEEVKNLIAKLPLKKAPGEDLLDNRTIRLLPDQALQFLALIFNSVLDVGYFPKAWKSASIIMIHKTGKTPTDVDSYRPTSLLPSLGKIMERLILNRLLTCKDVTKAIPKFQFGFRLQHGTPEQLHRVVNFALEAMENKEYAVGAFLDIQQAFDRVWHPGLLYKAKRLFPPQLYLVVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLYSVFASDMPTHTPVTEVDEEDVLIATYADDTAVLTKSKSILAATSGLQEYLDAFQQWAENWNVRINAEKCANVTFANRTGSCPGVSLNGRLIRHHQAYKYLGITLDRKLTFSRHITNIQQAFRTKVARMSWLIAPRNKLSLGCKVNIYKSILAPCLFYGLQVYGIAAKSHLNKIRILQAKTLRRISGAPWYMRTRDIERDLKVPKLGDKLQNIAQKYMERLNVHPNSLARKLGTAAVVNADPRTRVKRRLKRHHPHDLPNLVLT
>NLR1_Cth_pol#LINE/Jockey gi|419955|pir||S31175 hypothetical protein 2 - midge (Chironomus thummi) transposon NLR1Cth [Chironomus thummi]
MDCRQQSINVLYWNANGLTDKMLAFLDYLSKQNVDVACISETFLKPNSKIDSHPDYVIHRLDRVDRPKGGVAIIVKRNLKHQLQPSYNTKLMECIGIKVFINDTDSCHILSVYLPRGSKGGEIDLHLRDDINKITNLRGNYYICGDFNAKHREWNCNVANKSGNILQEMSGEFVIYFPDSPTYYPEDRNKSVSTIDLMLSNSNSNLETTELQCTEAMSDHCAVYFQIKTSKIDRTENTVYRYDYKNANWKKFKAQISRRIEDNIGENSCNTTDEIENHIKILSELIMEARNSSVKMKKIKFESTKLTPEIKDLINTKRSLRRRWQRSRDNQLKSELNYLQRVINEKIKELKNKNWNKRLSEIQPSNQTVWRIAKFCKKGSKTMPPLTNSGKTFITNKEKASALSEYFREAHENPLEQNDPQHTQEVNNTVKEALEQDNDENPELTDVNEIVSIIRNLKNPKAPGLDEVNNILIKNLPEKGFEYLKFIINSCLKLNHFPKVWKHAKVIPIPKHGKPASELSSYRPISLLSSISKILERVLLNRINDHLEDNNIIPNQQCGFRTGRSTSHQLIKVIKSAKENLNNKKSTGMIFLDVEKAFDRVWHNGLLYKMLKLRFPLPLIKTVRSFLSERSFAVFIKGQFSEIKVIKFGVPQGAVLSPTLYNIFTYDVVRETTNNIGLEADDTALYHSAENSADIVTHLQHTGRKVQQYMNKWKINLNKQKTQALFITNRHSRQLPGNNIKFLNENIKWETEAKYLGMVIDNRVTLKPHVEYVTNRAHTALRQLYPLISRNSQLDVRNKLLIYKLAIRPIFTYGCSAFGSMAKTHLQKLQVLQNKFLRIVLNKTRYERITDLHTEAKIPSIEGSRRKVASESSTVSLASQNTE
>Outcast-1_BF_gag#LINE/Jockey 479-1744  [Branchiostoma floridae]
MYTRAQKKKQENEAKPSIDPTNLANSDQERHFTQRKPGDHRTLRDTSKKQTVNQDQTADKHKPTQRSNTVLRKSTTLTKKVEKLPPVEEVETDEEDCVCGCDHPEGGRWICCDSCDKWWHNTCAKLSYKVCDFLTKNKEPYHCALCITQELNDNHSRPIEIPRKEENTQDTAKDSHIQDLSNHIVLIDGIPQPEHYKNSGKIIAEIARNKPHCAHNIDLAYLLPRGGIAVHCKNSKATEDLLQPWQDGAFNASGDQLSSHKANQSYGKRAILKNITPEATEEEIEQTILKQTDIQVKAHRYHYQDTGKPLRVVRVDATLGQLNDLFLKTLTIRGDTITVEPYRSKKTTPIRCYNCHKLGHIARLCKEEPSCVRCGGPKAHPNPCKPKCVNCSGTHSANDPRCREFQTIKQKLEERHLRHHR
>Outcast-1_BF_pol#LINE/Jockey 1752-5759  [Branchiostoma floridae]
MKKYIFLATLASLILATHDYTSEATSSTSLPTSSREKTSTNDNMKIAQVNIRSINTSSSLVEHMCKKQNIDVLCLSEVWNKTDRPQCLKTWNWIFKSRPTKRGGGVAIATKEHVKMMEIGLDDTTHADIAAVNIYSDTANFTLISAYVPPDNKEGMDELTHAVKSLLSTKRPLILCGDLNARHPAWGDEKDNQLGHQLNNFLLTNNLHPINDFRPTRENSVIDLTITNSQAMKLVERWSVQPEVQLKTDHHLITMQVGTKTPVEKVERYDLRNVDWEKWGETTHEQFQIWLEDNDKKTVPADIKVSDMYDSFKNTLNKCTEGIINKKTITTHSKGHWTPALEEQMKVTKTALRKFRRRRDTHNLNKYLKEKETLAQMDEDAQSKHWEAQLKSMDPKKPQSFWKTIKTHLNNNAKSVVQPLNLPNGDVATSDQEIAQVATDTFAPSEVEMNADLSHWKHNVSHAVETSIKHQTEAVKEDDDQEDPLNYDLELEEVEAAIGKMNCNSAPSPIEGILPVMIKKGGKALTEALHFLLQCIWRHGELPTQMKQDTKVLIRKPGKENYNLIKSYRPITLSSVIGKIMERVINNRLTWWAEVNNHFSHTQEAYRRHRTASHGVLRLTQDITEGWRQNKTTIAVFADYEACFDRVWQEGLLYKLITRGIKGRMLCYLSSFLKDREASYRINSITTPPQQSKVGIPQGAVLSTTLCNLYTADAYTDTNLDNFQYADDGAGWSSGEDIQSVKEEVEAGISKVILNWCPLWNMKIQQSKTKAMIFPPPQADDIEIEDLTVDNKSIEVVDNFKLVGVTLDQQLTYDKHITTTKAKAFRALKAVSKVTQAKKNPSQQAHILLYTTLVRPILDYASECTIAAKDRLEKAYSPIQRQALLTATGCLERTSTEALESIAAIPPIDIHLTCRQAQSYLRMKSKHTGNPIFDAITNMNSHKSDIQIGTPLHLLQTRLNEMKGEMEESMVDKEPYYDSRLPPFTMGSITGSFTATTITTGGKDKAREEILTILQDITGNNVPTTVIFTDGSALGNPGPTGCAAVVYEKWGSSEPYAVRKPVASKSNNYEGELEGLHLAIDTITRRPTTSNKILLLCDCKSAIETVTGVQQVEAYNSLINTLRSKLSTLKSKGYTIQITWCPGHMGIPGNEIADKEAKLAAEEARNCQNYTSWTKQQAMKHIESQAHERWNRRTKLNTRSEHMQKIATNMKKKGQTLGRRSTQVIINQLVSGHTRLNSYQNWMNPEISPSCTNCGAVETTNHFLYHCPRYEKERQHMLLEVENIYETYNTAEDSRDTDITTLAGMREDLSEGINKQMYMAFSQYIESTHRFDVLS
>Outcast_gag#LINE/Jockey 243-1538 [Anopheles gambiae]
MGVIDPGGNKTFGSYFSILGETSNKNTKKRRKIRGERINLNFSETVKNEEVFMVLESKTPGKSVACYNPFLFAKATEMAIGCRPLQTSMLRDGKILMRVKNETEAKKLKNINLKHGDCAIEVDVYEHKTLNQSKGIIRSDACRFLSEEELLEGLQPQNVSEVYIMKRKSQDGVLRNTRTAIITFKSTVLPRNIEIGYFTEKVELFIPNPMRCMKCMLFGHTKNNCNRQKICAKCGENFHENCTNPLKCTQCGENHSSLDKDCPVWKDEVEIKRIQTEKKITIKEARKIRRETVPAIPRIYIREKFSSIVRGNQTPIMNEKRKIDETSENNSNTPKSTENTPTKINSTTNNKYLDNNTEPKKNTNLTTITNDLENHTEKEKHTEIENTETQTNPNATDESATNITYYSDTEMYLNEIDIQGTIEIDYKETSQ
>Outcast_pol#LINE/Jockey 1633-5226 [Anopheles gambiae]
MEHLNILQTNIQSIRKNRDELTHILHDQKYHVACLQETWLKNEDKITIKGFNTIRTNREDGYGGSCILIKKGIKYKPIKLIDESDEIQITTILIHSGNLIIISIYIAPNTTKQIIKDTLAKITHNTQNYTNIIIAGDFNAHHTYWGDDRIDQKGNTIIEEIDNSNLIILKNNTYTYVPTDHNKRQTSIDLTIISKKIHNVINKTILEKHIGASNHKIIKITIKKHSTEPIQHTIINMNKVITNIKHMKGKDIINIKHFTKKVYKIIQNSKQKINFTLKSWWNNEIKKALQDKNIARQTFNSTKLIEHAIEFRKRTAIFKLKIKQAKEKQTERNMEKINKDTSSKELWNLLGNISNINTTNKESNLIHNEETYAKEFMNLNFTNNKKSKFRTFFSTNLPIDTELINSDIWKNILKQKKNTTPGLDKITYQMLRNINDESLTQIITDGNKMWENGKINKELKQIKIIAIPKPKKNINDPNNYRPIALIPTITKVLNSAVLLKLNKYIETKNILPEKSFGFRNKRTINQCINYFNNEINHNQRLNRISGAIFIDLEKAYNNVSTKILVEQMIKSDIPPQIIKWTYSFLRNRTLIIESNKKTYKMLVTDGLPQGDVMSPTLFNLYTKDIHKAINQTNTKNTIIQYADDFVILSSGVNERELQNNLQNALNAFAIETEQLKFNINSNKTKFMIFGKSHHTIQLNIHNNSIEHTNTYKYLGTVIDPKLNFHKHIELLRNKATNRLNFLKIISTQKNNINPKNSLKIYRATIRNTMETGASYTLNSNKNKYKTMNSTINQALRKATGCTKTTPINTLHAIAAEIPFNIRSRFIVRKELAKDLVYSPIIRQQLQIHKRTKYKKKKKTIHETTYEKDNKILKQLYIAKNNDITTHIKINTKIKDTIETKTKTNTQILKQITIENMNKYENNRPTIYTDGSIAGNKVGIGIYIKNKPQHYYYSYRLKNFTSITTAELIAIEKALLLAQENNIDNPVIFTDSLTSCNILQKAMTENKIEEICYNIIKTATNIKADIVWIPSHVGIDGNDRADELAKKGTLTNWFYKNKIRYTDATQYYKKEMEEETKKWYTDLGRNKGKKFMQFQNVFKTELWHKQVNLNGNEVKTINKILAGHDLSEFWLHKMKIVENGTCEKCLVPETGRHKIFECQKYKRHKDISLDTLYEKWMETSGNTCKKIIEFIKENNITL
>Spock_DMi_gag#LINE/Jockey 709-1422 [Drosophila miranda]
NRALAISRRLLEWAMAGARLCAGRREYANGLVEKSVFAAQGYSTRIFRHFVQKAGLIFGFPVHYSEEQLAELVTSDIPIEEIVRITRRDRASGERVPTGRVKLWFRGEQLPTKINFLYSKVEVKPFVQLIQCFRCFRFGHLAQHCKSGAKCFKCGQDRSKDIICSGLVCANCKGEHAATHPQCEARKKAYAIQKCMTLENLTRAEVKARYPILFDRTSPNLRDQGEFPRPSWQSNRS
>Spock_DMi_pol#LINE/Jockey 1805-4781 via tfasty with I-1_DR_pol, 4 frameshifts and 5 stopcodons. Distant match (50% sim) [Drosophila miranda]
MKILQLNIQSLTHNNNKQLLSMFLDQNAIDIAILSEIWVLNNADCSILDYNFFCMPREDGYGGVGIYVRKNIQFSILKIENDLEILGIKTLNLKSNFNIFSIYAPPSTTVSQFKSGTKKFLEFAASLDIPSIVGGDFNARSSIWGSPICDRNGRSIENSTREAGFICLNDGSPTFSRSPSQFSVLDLSFSNYRNGTINWQVLKTKITNSNHFPIVLSVQGLNAPLQGKKILHNRIARILGASDFSNLEELNEKVKSLTLKNTVTFPRKNKYVAKKWWNEETEKLFRVRNACRQKFYLTKKLADARATLEADKNLQNHVKNLRKRNFSKFIEEVSSSPSMWSRVKNIKKYGQIKNVGNKWTNEDDKNFLNMVKVTPSTSNSRPPKKIPAPLxGPDDPEPLELEEFLAFLKTRNPNSARGPDGISFRMLQKLPSGKNKTFLKLYNKVWLSGVIPEVWRRIKVVPIPKKNADPTSFQNHRPICLINTLFKSIEGLIKLKLDEHIANCDQLPVRSYALRRNRSTALCINDLINKVLALKARGCQVVAACWISSFLNRRILIKGKSEVEVNRGVSQGSCLSPTLFNLYTAELHDINSHNCLLFQYADDFFIVCFHKDVSIAKGVLEDSIDKFEEKCNRLNLSFNPVKSKSIYFNNRRAALNISHQGVEIRQVEQIKYLGRTISANNSASGHIDLAISESNRNCAFLSGCHYGISPKRGLIFYKAFVRSRLEYACSSFCNLSKSALAKIKSHCNHHLRKSLGLIICTLVPIIYHMAGELPPDYRRDSWRRKSWLRCLHLISQQVKQCQQIGIxTRATLRHIGSLAAxxIELRFSRTPASFCTKISSDLEFFKGSAPNKHAIDQAGIMLLLGEKKDQLTKGGFEIYYTDGSVADGHSSAAFLHDRTGFLDSYYTHKTLSSLSAELLAIEKAxDHAILYNFPRVALLTDSRNGALILAKNIQDNSIAYKIREKIQQNPHLRTVEVHYIPGHATKQTLRTKH
>Syrinx_DS_pol#LINE/Jockey 1-2613 [Darwinula stevensoni]
GTYCRGSAVYILSNLDSELISRSWQTDSEIIGVKILFSLTTLSVFHAYFPPNFPPSPSDLDFINQINGPSLLLGDLNAHSPDLSFCSEPNTTGNILSDFIASSSFSILNDDSPTHHCPGLGNSYRIDLALGNAQFLPFFHSFSIGEDVGSDHVPILINCNFSHEPPPSTSLPRFDFRNADWHSFQDVLETLLPHSLPLETVPQLEEAVTLITEAIQIAQDIAVPKTTPSHKPYNLSVETLNKIKERRKLRRLFYRNKDPTLKPLINKLNHEIKALIKIESDQYWCDFCEQLNSEEDPANFWKLFKRVGNPRNSKSRPLKFDGGTHCSDESKASVFASTLLEAMTEPPSSLGRRPPEVCLDLEKKICNFSLSDLSSKPEYLSPSQKALTYEITLDEIEAAIKVSPNKAPGPDNIFVNSIKHLSSRALHSLYLIYNACLRLGHVPLGWKSAIITMIPKPDKDLSDPSSFRPISLLSCLQKLLERILTSRLNDYLETNNLLSPSQSGFRKNLCTTDQLVRLHHDALVAVHSKMHLLALFFDVTKAFDKVWHAGLIFKLFFHFKIPLQLLRWTASYLTERSFRVRVGNSFSETRSPTAGVPQGSVIAPLLFILYVNDLSSSIPRKLNVCTSQYADDTALWLSGRDVTALESRAQAALNALSYYCRNWRISMNPSKSSLLLFARDRKPHSVNVRLDGVLIPRSRFTRFLGVNFDSNLRWNEHVNVIRTKSIRKLNCLKILAGVNKCEPHVILKLYVTYLRPVLTYAFAAWANCPETVLDQLERIERAAIRYAFRLPTHFSNSYIYRISGLTPLSRHASQLAYNYYNDPKRPGDIKEIPVRLNKKFTIGRFKHCKTYPYNKILERLGKTTNCSPPDP
>Vingi-1_AAl_pol#LINE/Jockey 91-3072 [Atelerix albiventris]
MDPSHFQSQQQAALDSLQAVGPARGVLQLNVEELSLSKRVLIGQLAIQHQADVICLQETHIAVDEAARFTISGFNLICYNLHPKHGRAIYAKSYLADVYHTASSTFYNSNSIGTIQLVNVYKPPSASWDNEVLPSPNHPAIYVGDFNSHHQDWGYSSTRADGSILADWASANDLSLLYDPKQPGFFHSARWNKDSSPDLCWISSVNGQAFPAMRQVLKDFPHSHHRPAIIHIGLQLPLILCSEKLRWNFRKANWHLFSDLTNKSIPAIPINSIPSEDSYRRFRQAIFKAASQAIPHGRRANYTPCLDAECEQLLKQYDESGDPDVADHLIASLDAARQARWQQLTESLNFTHSSRKAWKLLHSLGAGSQPSPVSHPPVSPNSVASHLTQVGRAKIDPVWKREISHEWSSHFRLSCSSPKLSPFTLSELEDALKRVKPGTAAGYDNITPELILNLGPAAKKWLTIFLSHILESESMPKIWRRAKIIAVLKPKKDPTLAASYRPISLLSMCYKLLERLLLSRISPLTEKFLSPAQAGFRPGRSTCEQVLALSTYIENGFQKNLKTGAVFVDLTAAYDTVWHRGLLVKISRCLPPWVANTISFLLQNRRFWVHLGDKSSRWRLVSSGLPQGSVLAPMLFNIYINDLPETSSRKFIYADDICCATQASKFDILEETLTKDMSLISDYCKKWRLIPSTVKTVSSVFHLHHASASREINVQLDDTRIRHEAQPVYLGVTLDRTLSFHEHLIKTAAKVGARNNIIARLASSSWGASASTLRSSSLALCYSTAEYCAPVWFCSPHVHLVDSKLYSSMRIISGTIHSTPVPWLPVLSNIAPPDIRRDAASSKFISHVYARPDLPIYADIFAHPVQRLTSRHPIWSPTPTLNFSVPDSWKQSWQLAEVKNKHLIADPCKRQPGFDLAHYDWALLNRYRTGHGRCADMFHRWGARDDPNCPCGYRQTMTHIVNDCHLSRFKGGLETLHQAQPDAINWLRKKGKR
>Vingi-1_APis_pol#LINE/Jockey 101-2700 via tfasty with Jockey1_SP_pol, 1 frameshift and 2 stopcodons. [Acyrthosiphon pisum]
MSTKTPKRFFSGPALITTSINIEGFSNNKSDILQELCQKNTCDVICVQETHRDKYNIRPKIKGMKLAIxRPHKKYGSTIFVRDNLKILSTSRTETNDIEILTVELTNCTVTSVYKPPNIPFKFTKLTNFENQRKNIVIGDFNSHNSAWGYNETNEDGEEVEKWTEANDLTLVHYTKLPSSFNSGRWRRGYNPDIIFVSNNIKQQCKKKVEAPIPNSQHRPITCQIKAIIHPENVPMIRRYNFKKANWDNFKTQLDTEINKITPIPENYGQFSNLVKNISKQNIPRGCRTQYIPGMGKENKELLENYINQFNNDPFAEETIITGESLVEKLSEARREKWRSLISETNMTQNSSKAWRMLRNLGNDPKNAESHINVTPNEIAHQLLKNGKCPGIKKVKPKIGREPKNEANLLQTPFTLEELDVAMARMKEKKAPGLDEIRTEQIKNFGxQTKRWLLELYNNCIKCVKIPVIWRKSRITALIKPVKQPTEANNFRPISLLCHTYKLPERLILKRINDIVDKSLINEQAGFRGGKSCTGQILNLTQNIENGYEEKLVTGAVFIDLTAAYDTINHRILFKKVYEITRDYNLTSFIAEMLRKRRYFVELQGKKSRWRTQKNGLAQGSVLAPLLFNIYTNDQPTPLGTQRFIYDDDLALTAQNHSFGNIESTLNNALEEMSIYYKKNWLKPNPKKTQVCTFHLRNKEAKRKLRIIWEDVEIENTEYPKYLGVTLDRALSFKLHCGNVKQKTHARNNLIRRLTGTSWGADPNTVRTSALALCYSTAEYAAPVWARSCHAKKVDTALNETCRIISGCLKPTPVEEIQVLSGIAPPDIRREIASEIERHKQQNDPRHPLHGKSPPQPRLKSRKSFLT
>Vingi-1_Acar_pol#LINE/Jockey 110-3058  [Anolis carolinensis]
MDEYQRSLSRPLLTIMSINIEGLSLAKEELLAKMSEDISCDILCIQETHRDITMRRPKILGMQLAVERPHRQYGSAIFVRSGVAISATSLTEVNNIEILSVELDSCTVSSLYKPPGADFYFTPPTSCHNHEAHFVVGDFNSHSCVWGYDEDDRNGEAVLTWADNSRMSLLHDSKLPPSFNSGRWKRGYNPDLIFVKESISHQCTKRVLNPIPNTQHRPICCVAYAAVRPKSVPFRRRYNFNKANWTKFTETLEAAISDIEPSIENYDLFVEAVKRSSRLSIPRGCRTSYLPGLNEESLNQLQEYLRLFQENPYSDGTIAAGQKLSTALANAKKDRWIELLENLDMSKSSRKAWQLLRRLDSDPLVNPGHANVTPDQIAHQLIQNGKTNCSRIKMKINRVPELETHQLSSPLNLKELREAIKRCKTGKAPGLDDLMMEQIKHLGAKAENWLLKFYNQCLAHKQIPRAWRKTKIIAILKPGKDASNARNYRPISLLCHLYKVYERMLLNRLGPVIEPKLIAQQAGFRPGKNCTGQILHLTEHIEEGYEKGCITGTVFVDLTAAYDTVQHRKMLHKVYHITRDFDFTKTVQTLLENRSFYVEFQGQKSRWRRQKNGLPQGSVLAPTLFNIFTNDQPQPPLTKSFIYADDLGLTTQAKDFETVEKQLTNALKDLSSYYKENHLKPNPAKTQVCAFHLRNREANRKLKVTWEGQELEHCFHPKYLGVTLDRTLTYRKHCMNTKHKVAARNNILRKLTGSAWGADPQVIRTSALALSFSTAEYACPVWHKSAHAKQVDIALNETCRIITGCLKPTPVDKLYKLAGIAPPDVRREVAANGERKKVEHCESHPLHGYHPPPTRLKSRKGFMRTTTPLDVPPAAARVSLWAAKPGNSNWMAPQEGLPPGANQEWATWKSLNRLRSGVGRSKDNLARWHYLEESSTLCDCGAEQTTQHMYACPQCPASCTEEELFKATDNAVAVARFWSKTI
>Vingi-1_BM_pol#LINE/Jockey 155-3166 [Bombyx mori]
MPGCARRNASTNQCQMTKDIGPSVRVCSLNIEGITQAKTECMLRIAIDNKIDIILLQETHTADLAQLARRGTIPGFRMICATFHPQYGTATYIREALLPSASIICTSTDTENIAMSTIQVGEMIVCNLYKPPNSTWPQPGLPNYGHPSIVVGDFNSHHTSWGYKNNDANGESVVKWADESSYFLVHCNKDKGTVKSARWGREYNLDLAFVSLDCKRRPLQVNRTVLQDFPHSQHRPVLLDIGLKILIIQSYPAPRWNFTKADWERYTKTLDDSIRWIPPLRENYERFLKLVLSTAKKCIPRGYRKQYIPCWTTKTEALWQEFITTSDRNVAHELIESLNEARQAKWESTVQDMNFTHSSRKAWHLLKRFTSGTTGQKSEPKVCPSKIADRIVKLSKAPSHKKHTREVRKDLKSLKTDTASDPYFSRPVTADEITASIRAIKGNKACGEDKIFPEFIKDSGPHTRVWLAKFLTNIIDSGKIPLAMKRAKITAILKPGKPADSADSYRPIALLSVMYKLLERIILNRISPTIEKHIPQEQAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFVDLTAAYDTVWRQGLLYKLLKLIPCIKIYNVIEDALTNRPFRVHLGDKSSLSRVLNNGLPQGSVLAPTLFNVYTHDVPETLSRKFAYADDLALVAQGRSIETTECHLENDMATLDNYFIRWRLCPNASKTEVCCFHLNNRQANKKPNVTFRGSTLPFNPCPKYLGVTLDRSLTYSAHLNNVAAKLRTRNNILQKLTGTTWGASANCLRTSALALVYTTAEYCAPAWLNSSHTTVVDTQLNHTMRLITGCLKPTPLHWLPALSSIAPPHLRRTHHLYAEIEKALRRPELPINRDLANFKPTRLKSRNPPALQAHQPHSNWNTNEAWVKEWSARCIPPELFELNPHSRPPGFKEKRPIWCMLNHLRTGVGHCNQLRKRWGWTENESCECGCPEQTIRHIVMECPLTRFAGQVEDLKNVTEEAIDYFTNCKFKL
>Vingi-1_CE_pol#LINE/Jockey 73-2874 Fragment [Caenorhabditis elegans]
QIMEISNVYVPPRSSSSNHARLMTDFSNIFQTKSKSIISGDVNAHHSAWHSEGSEDTRGRELAELIDLHPDLIIQNEQVHTRADTYSISSPDITICTADLATKCHWSTLYKLGSDHIPMKLKINQAATPKRPKRLVANFKKANWQLFRDHIESRINGYSGPMDAIPMEKFFNKVILEADKKAVPKGSIDPKLKVDPKPLRLLAKEIADRETRNPLDPEIPILTRELATKRAERKNSEWRKKAHDQNAKRKSDVSSFWKLIKGVTKGRQYKGPVAFGDGLPKTGATIANKMAKSLVEAGRTKISHDEELKWRKNVRRNKRISKIAPLQDRITSIELHNMAIKMSPSAAIGPDGIAQIHIRKLPMCGYSFLAYLYNVSLSTNIIPDKWKKANVIMIPKPKKDPAIASSYRPISLLSPIAKLLEKAILKRIKNSIESPAHQHGFKPEHSTTTAVIQVTNDIIGGLNMKNPPERAIMACLDLRAAFDKVPTKKLCNDLMEAQGIEPKIKLWLGNYLHKRLIRTSHDNHWSKWHTLLGGVPQGSVISPNLFTFYLKDMPTQQDTMLISYADDMSIIARDKKIEKAAEKVQLHIDEIAKYLKERGMSISAEKSTVTVFSCDPKEHKTKPDIYWMDDPIPVINAPKLLGITLNTMTGTKDHVGNAIKSMQNKTRVIKSMAGTSWGNDRETMLYTTQALIKPTALYGAPAWTSLLSDTNLEKLEIAYRSALRACVGLTKDTPTDHIYQECRVLPLKEEYKLATQQMYLAAIKSNTHPCRDLKAKGQLERTSKPPRIPPLKLSDSEKLRLDNIPGDKTETQKKNHTKLVADFIRNAPNNRILNKPPPRVNYRDERTLPKETRCELARLRCGHSLLVEKYKARLEERQIKKCLNCGDEEGDVQHLLSCLQTPVPLEELWTSPLTVAAALGLPTKTPFDPGGGH
>Vingi-1_CJ_pol#LINE/Jockey 3-3149 Fragment [Caenorhabditis japonica]
RPAPPPPSQHTTKCRAKPAKTRILSWNVNGWSKRRSELATIIAKEKPDIVCLQETKLDKTNLGYTPTGYKVALASRNKFGGGVCTMVRDDWIFTISKTTSKKTAEILSITIDKLMVTNVYFPPRSSDSPTAEVREDVMEILDMASEKHIITGDWNAHAKTWHSHKTDERGAMIEDELDTRGVHVVLNEDSFTRAASGVLSSPDITISTSDLAACSSWRTCGVLNTDHLPVIIDTMAEIPKLVRPXRIMANFKKANWTDFSDSIETKVACYAGPRDAYSLENFLSATITRAASKHIPHGKFTPTREHTGDTGEIAELTRERERIQKRNPLDSNLKALNDKIEAARRELRRLXWHQKIEDMEDKRKIDCNALWRVIKGLKPKTKSTGSIRLPNGTTTTNPKTIANAMASSLVAVGKGRDCREERIAWRRTKRRLKKLRPQLPASSISHAEVKLAILKGKPSKALGPDGICHLHLKHVPDNCINLMAELFNASIDENKVPDSWKKANVFMLPKPGKDPSEIKSFRPVSLLSPVAKVLERIILERIRREIESPKDQHAFKKNHSTTTAITEATSCIVGGLNMEKPACRTIMTCLDMKAAFDTISIAKLLCGLEDAIADKKVCGWLGNYLHKRRINVQYDDVKSSWLTLRGGVPQGAVLSPNLFNFFIRDVPAIPDTKIITYADDMTLLVQDPLLSKAAEKSQDALDSLQKWFKDKHLDISAGKSTVTIFTADTKEFKYDPGLKWEGSVIPMQNRTRLLGVELDTMLRMTGHVEQVSARLAKANNILRALAGAKWGSSKETMLRTFKAIIKPLATYAGPAWHQLMSETQKTKLERQYVGGLKACCGLTKDTPRQLVYHETRMLPLSEELTLGSEQLAIAAIKTPGHPTSDLSRRRPKERTCGNRPRTPPLGCLEDRGDEWRRMRGDTRAVQKRNHTSFVKSYLSNHGIHPILGRQPPALSEEESTLPRNTRVELARLRAERSLLLEKYKAKVENRPVVCCIKCNDDVGDLKHFLKCYPVKPLPMSKLWKDPVAAATALGLAVTPFDPGGDADS
>Vingi-1_EE_pol#LINE/Jockey 92-3073 [Erinaceus europaeus]
MDPSHFQSQQQAAPDSFQAVGPALRVLQLNVEGLSFAKRVLIGQLAIQHQADVICLQETHIAVDEAARFTISGFDLICYNLHPKHGRAIYAKSCLADVYHTASSTFYDSITIGTIQLVNVYKPPSASWDNEVLPSPNHPAVYVGDFNSHHQDWGYSSTRADGSILADWASANDLSLLYDPKQPGSFHSARWNKDSSPDLCWISTVNGQAFPATRQVLKIFPHSHHRPAIIHIGLQLPLILCSEKLRWNFRKANWRLFSDLTNKSIPAIPINSIPSEDSYRRFRQAIFKAASQAIPRGRRANYTPCLDAECEQLLKQYDESGDPDVADHLIASLDAARQARWQQLTESLNFTHSSRKAWKLLHRLGAGSQPPPVSHPPVSPNSVASHLTQVGRAKIDPVWKREISHEWSSHFRLSCPSPKLSPFTLSELEDALKRVKPGTAAGYDNITPELILNLGPAAKKWLASFLSHILESESMPKVWRRAKIIAVLKPKKDPTLAASYRPISLLSVCYKLLERLLLSRISHLTEKFLSPAQAGFRPGRSTCEQALALSTYIENGFQKNLKTGAVFVDLTAAYDTVWHRGLLVKISRCLPPWVANTISFLLQNRRFRVHLGDKSSRWRLVSSGLPQGSVLAPTLFNIYINDLPETSSRKFIYADDICCATQASKFDILEETLTKDMSLISDYCKKWRLIPSTAKTVSSVFHLHHASASRELNVQLGDTRIRHEAQPVYLGVTLDRTLSFHEHLIKTAAKVGARNNIIARLASSSWGASASTLRSSSLALCYSTAEYCAPVWFRSPHVHLVDSKLYSSMRIISGTIRSTPVPWLPVLSNIAPPDIRRDAASSKFISHVYARPDLPIYADIFAHPVQRLTSRHPIWSPTPTLNFSVPDSWKQSWQSAEVKNKHLITDPCERQPGFDLARYDWALLNRYRTGHGRCAAMFHRWGARDDPNCPCGYRQTMTHIVNDCHLSRFKGGLETLHQAQPDAVDWLRKKGKR
>Vingi-1_HR_pol#LINE/Jockey 2-3187 Nearly complete. [Helobdella robusta]
CPHPSSNSRCLLASAGASRRPTSTSSFNSSARNKPSTSQAVSAGKLNFLQLNCNGMKNKQEEIQQHLINHNIHIAALQESKLTKGSKNPVFKEYAIYRKDRGIGRGGGLILLIHNSIPYSIKSLPDVPTIESQAITINASDTDINIINIYIPPQSTCPTGFTASISQFLLIPNVVLLGDVNAHDPLWYSSLEDTRGEALASEIENSGCGTLNLDTPTRLPASGQPSSPDISVASDTLIINMEWSTMTSLSSDHLPIHISLQTTIQHINPPKIRFINFAKANWDGFTKESEAGFSNQVFPPNLSAAEKSFRRILQDASDHNIPSGRRISYTPGLSKEITDLMKRRDDIRATDPTSKDIATTSTIIQHKINKLKQSRWKEFLGTFNRITNTKRLWSTIKALSGKPTQYPNIAINFNNRSLTNNLQIANSFNKIFTSATKHSSNKLNRITNKAVKKFPLDDYPTLTPNQVTEAIKTSKPSKATGPDNLTIFHLKHLGPKGISFLTNIFNESLRTCRIPEIYKKSKIIPLLKPGKPVNDAKSYRPISLLCPAAKVFEKCILPIISNHLTLASHQHGFRPLHSTTTALTTMVTDIANGLNQKRPAHRTILTALDLTKAFDTVNHRILISDLMSSSLPRSIVRWLSNYLHGRSASTEFRRQFSKQRTIRSGVPQGSVLSPTLFNYYVSKIPSPPPDVKVISYADDFSIYTTGPNADDLTLRLNCYLPKLYDFFNSRNLEISTSKSTVTLFTTHTSQYHYHPAIKINNNLLPLEHNPKILGLTLDTMLSFSQHHKETASKASIRNNILKALSGTTYGQDKETLLQTYKTIGRSTIEYACPAWASLTSDSSFSRLQRSQNAALRLITGCHVIASERHLHSECQMLTVRQHSELIASQFLLLCHNPSHPCHHIITQQHPHRNIKTTLLSKWASTTHAVLPTTINSDSLKSALKTLHNNTIKAATETYQSPLLLLDGWPPPTPKIDPTEESLPRAIRRTLAQLRSGHSILLNSYKNRIDSGHLNICPFCNNHTDDVPHLFSCPQNTTKLQPIDLWRNPIAVAVWLRPRLEP
>Vingi-1_Lch_pol#LINE/Jockey 1-2889 via tfasty with Vingi-1_EE_pol, 1 stopcodon. [Latimeria chalumnae]
CEYLERLLKKHSVDILVLEETHIEHTHLFDTRGCITGFDLIACNNHLKYGLACYVKQDIEDCTELKHTSIAGVFTTAILVEELTITNVYKPPLVQWPDPPLPPSQHPSIHLGDFNNHHTMWGYEDDNYNGVAIVQWASLEDKFLLFDAKDRGTFHSSRWQREYNPDLCFLSKDSKGNPIIASRTVLDDFPNSQHRPSIINVGIEIPVITSTPEPRWNFKKADWETFQKSVDTNIRWIPPTTDAFNRFIGIIKAAAKRSIPRGFRKTYIPCWTEESEALYQEYSLNKNPATATTMPESLNSATRERWKSLVEETNFTHSSRKAWALLRQLGGANPXYKHRTTIRADAIASHLIQTSKAPVDKKFxRQVMRQLSTNLMAAPRSSTMSDPFTLNKLNAALSATKSGKAAGPDSVYPEFLKALGPKAKRWLTSFFSEVLATGKIPSIWREAKIIAILKQGKNACEASSYRPISLLCTCYKVLERLLRHRLAPIIEPTIPKKQAGFRSSRNCYDQVVALTTHIKASFQHQLKTAMAFVDLSAVYDTVWKHGLLSKLSTILPCRTMIHLLNSMLSNRHFHVYTSTKKSRYRTLNNGLPQGSVLAPMLFNVYTSDLPETQSRKFVYADDIALATQNKNLSATEETLTSDLQRMEAYFRQWRLQPNPQKTVTSTFHLNTHQANQALKVSFCGTEVNHAKNPSYLGVTLDRTLSYRQHLQNLGKKLKSRVNLIQKLAGTTWGADAQTLHTAALALVYSTAEYCSPAWLSSPHVKSVDVQLNSTMRIITGTLLSTPTPWLPVLANIAPSHLRREYAVSREYNRYTSKDMPIQADLNNLPPTRLKSRRPFWTVAETLHRSPLSLNDRWRNAWKNCDIPNGFLVEDPTVQPEGSNLPRKQWTTINRFRTGHGRCCHLFHKWKIKASPSCDCGAPNQTLEHIIEHCPRRKFAGSLQDIHAVTPEALAWISDLDIDI
>Vingi-1_Lme_pol#LINE/Jockey 1-2925 via tfasty with Vingi-1_EE_pol, 4 stopcodons. [Latimeria menadoensis]
ICQLNIEGISRSKCEYLERLLKKHSVDVLVLEETHIEHTHLFDTTGRITGFDLIACNNHLKYGLACYVKQGIKDCTELKHTSIARVFTTAICVGELTITNVYKPLLVQWPDPSLPPSQHPSIHLGDFNSHHTIWGYDDDDYNGVAIVQWASLEDKFLLFDAKDQGTFHSSRWQREYNPDLCFLSKDSKGNPIIASRTVLNDFPNSQPRPSIINVGIEIPVITSTPEPRWNFKKADWETFQKSVDTNIRWIPPTTDAVNRFIEIIKAAAKYCIPQGFRKTYIPCWMEESEALYQEYLLNKNPATVTAMLESLNLARHERWKSLVEETNFTHSSSKAWALLRQLGGANPTCKHRTTIRVDAIASHLIQSKAPVDKKFxHQITQxLSTNLMAAPRSSTIPDPFTLNELNAALSATKSGKAAGPDGVYPEFLKALGPKVKRWLTFFFSEILATSKIPSIWREAKIIALLKQGKNACEASSYCPISLLCTCYKVLERLLLHRLSPIIEPTIPKEQVGFRSGRNCCDQVVVLTMHIEAGFQCQLKTAVAFVDLSVVYDTVWKHGXLSKLSTILPCRTMIHLFNSMLSNQCFHVYIGTQKSRYRTLNNGLPQGSVLAPMLFNVYTGDLPETQSHKFVYADDITLAMENKNLSATEETLTSDLxRMEAYFHRWRLQPNPQKTITLTFHLNNHQANRALNVSFGGTEVNHVKKPSYLGVTLDCTLSYRQHLQNLGKKLKSRVNLIQKLTGTTWGADAQTFCTAALALVFSTAEYCSLAWLSSPHVKSIDVQLNSTMRIITGVLLSTPTPWLPVLANITPSHLHREYAVSREYNCYTSKDMPIQADLNNLPPTHLKSRRPFxTIAETLHRSPLSLNDRWRNAWKNCNIPNGFLVEDPTVQPEGSNLPRKQWTTINRFRTGHGRCCHLFQKWKIKASPSCDCGAPNQTLEHIIEHYSRRKFTGSLQHIHAVTPEALAWISDLDIDI
>Vingi-1_PMa_pol#LINE/Jockey 11-3088 [Petromyzon marinus]
MTTCSRSSLLRAKAQRMSSHRRPNARQRYPGLKSNSTESISQGQSNVNVGPSLRIMQLNIEGLSSAKCDYIAKILQFQDVDVLALEETHLDRQCPRSKIIGYTLIAASHHPKHGLATYVKNDLKDTVQVVPHTSPHYIAIKINDVTVVNVYKPPGMEWPCPALPQPSHPIIHIGDFNSHHTLWGYSANDRAGEQLTSWAAAEDQHLLYDAKDRGTFKSARWKKCYTPDLCFVSRDQNGNPMPSTRTILDDFPNSQHRPVVIHIGLQIPLFRCAPKPRWNLRSAEWVNFTADLEESVGMIPPRAVNYRRFVGLIKAVAKANIARGFRKVFTPCWTPESEQLFRKFNADKKQETAKALLESLNLQRRERWRETVEALDFAKSSRKAWRLLRLMGAAATPAYKPPQVSPDEIARQLINNSRTSIDKSTRRQVYKELYCTLDNCQETSEFSRPFSVEEVDAGIAQLKCGKASGLDDIYPEFIKNLGPRARKWLATFFTDIHSTSIVPKEWKEARIIAILKPGKDASDAQNYRPISLLSVCYKLMERLLLKRLMPTLEEIVPQEQAGFRTGRNCCDQVLALTSHIEAGFERQLKTATAFIDLSSAYDTVWRKGLLLKLAKAVPCRPTIRLITEMLSNRWFTVHLGEAASSPRRLNNGLPQGSVLAPALFNLYTSDIPATSCRKFTYADDIALATQARKMEDTEAVLEKDLKTLEEYFKNWRLKPNPSKSVVSAFHLNNRQASKTLNVNFCGAKLRHDEHPRYLGVTLDRTLNYHHHLKQAKGKTKARVNIIQKLAGTTWGSDASTLKISTQALVHSTAEYCAPVWGASPHTNLVDAEINNALRIISGSLKSTPLPWLPVLANIAPANIRRDDATTREYNKIMKNFTLPLHQDLKEPPRPRLKSRKPFWIRASALAAENKDTATRWSESWAAMDVANKNIIHDPTVEVPGFSLPRRLWTTLNRARTQHGRCAYTFHKWKIKESPNCDCGEVQTIKHITDECSIHAHPGGIAEIHTASTTSLDWMRNLCIHL
>Vingi-1_Pp_pol#LINE/Jockey 1-2871 [Phlebotomus papatasi]
MTKEDILCEFCVNFECDVICLQETHRGPTQGRPKINGMKLVIERPHDKYGSAIFVKSDVDVKSVALTDCDDVEILTVNFEKFSVTSVYKPPGTCFQFEEPNNFGNSNAHFVLGDFNCHNILWGYGKNNDDGDALEEWSESKGLTLIHDAKLPASFNSARWQRGYNPDLIFVDEKIAPSCCKNVLPPIPHTQHRPIMCQLFAAIKPREVPFRRRFNFSKANWNRFASDVDLSLGDIEPTSENYDRFVEAVKKVSRRHIPRGCRTQYIPGLSSEISSIMSEYSKSFEADPFSDATLELANVLTDAVAESRRERWVSIVESMDLSKNSHRAWRLIRHLNNDPTSVKTLPQVTANQIAHTLLMNGKVGSRSAKPKFIRDPTTEVQHLSAPFRVDELVLAVKSMKNKKAAGYDGLYSEQVKSFGPRTIDWLLKLFNYCLSHRKIPKAWRKAHVVAIPKPGKDINDPKSYRPVSLLCHLFKVFERMLLNRILTVVEEKLISEQAGYRPGKSSSNQVLNLTQFIEDGFEEGKITGVAFVDLSAAFDTVNHRVLLTKFYKLTSDYGLTQMIGTLLQNRRFFVEFRGQKSRWRLQKNGLPQGSVLAPMLFNIYTNDQPLPSPSKAFLYADDLALAVKASTFENVEAHLQTSLIELSKFYRENQLRPNPSKTEVCCFHLRNRWAKRRLNVEWEGRTLNHNFTPKYLGVTLDRSLTYKTHCNNIKDKVKTRNNLLRKLVNTQWGAQPKVLRTSALALSFSAAEYAAEVWERSAHAKKVDIALNDTARIVTGCLKSTPVNKLYPLAGIAPPQVRRQVISRKEMSKASTEPRHLLYGQVRVRQRLKSRKSFSQTVTCLEATPEEAKLSLWKNTFPPDFVEPKENLPPGGDQDWKTWRALNRLRSGVARSRDNRRRWGFLEGDVLCDCGVVQTTPHLYVCPLAPASCETGDLMTANSAAIDVARFWARHV
>Vingi-1_Tcas_pol#LINE/Jockey 50-3112 [Tribolium castaneum]
MGGFSPPRNYRHLDDRSRSTRSSRSSSGFLGLRSSSEILELPQNLTVCQLNIEGISKDKCDFLSKMALRERIDVIVLQETHTSSEMDLFSRGQIPGYTLVDFINSASYGCATYVKSNFEDYQSIAKTQENNIFLLTVKIAGIFIINVYKPPNDQWPENLVLNYHPAIYIGDFNGHHNLWGYAENYRNGLALVSWMELNKLHLVFDGKTRKSFYSARLKKEYDPDLCFVTINNEVPLQASRDVLSGFPHSQHRPVIIKIGNEIKQFPSLQKPRWNFQKAKWNEFAKQVDSDLRWIPPTSINYHRFVGAIKNAAKKFIPRGFRKNYVPCWSDETKSFYNAYVSNPNPENADAVLNSFNKARKEKWNNLMEDLNFTHSSRSSWKLLQKLGSSNIAQPKTDSAISPNAVASRLVNVSNSVKLEKRAKKEMKRRVQKQRKKMKVSEELSRCFNVDELKAAISSTKSKKSAGFDGIYPEFIKNLGSFALKWLTFLFNDIFISARLPSEFKKTKVIAILKKGKPPQEASSYRPISLLSVCYKILEKMIYQRISPLIEDILPSEQAGFRPQRSCCDQVLALTTHIESGFEKRLKTGVVLLDLTAAYDTVWKDGLIHKLYKVVPCKRIVSLIESMLTNRKFRVFVGEKSSKVKTLNNGLPQGAVLSPLLFNVYTSDLPETFSRKFVYADDIALTFQHKEFHRLEEQLSQDASVLCDYFKQWRLCVNPSKTEVSCFHLSNSQKERKLNVSLNGIPLKHNFHPVYLGVSLDCSLTYKFHLEKLRQKLKTRNNILLKLAGSTWGANAKTLRVTALALVFSTAEYCSAVWMNSSHTSKIDAQLNTAMRVITGTLKSTPTEWLPVLSNIAPPALRRKLAVKKLWNKYRRHPQEYPIWSDLIAPENRLKSRKPFWVETFNIENFFIINEWRNIWSNIQLFNKDLIEDPSKRVPGMDQPRWVWVKLNRLRTGHARCKSMLFKWKATENPYCQCGQVEETIQHLVEECQITSFQGGFNEIHQLSPQAKTWLSTIKVL
>Vingi-2_Acar_pol#LINE/Jockey 79-3078 [Anolis carolinensis]
ILSQPEATCNLQHASKQTNQRTFSGPTMTIISINIEGMSAAKEQLLYELCRDKKCDVLCVQETHRDKQQKRPKVPGMILVAERPHAQYGSAVFVKPGLQVSSVHNTEENNIEVITVELNNITITSVYKPPNEEFCFSSPENFDSHQRTVVIGDFNSHSHVWGYAQEDKNGEAVLSWAELHKLSLIHDSKLPPSYNSGRWHRGYNPDLLFVSDSIVQQCSKSVGPPIPNTQHRPIVCQLFPTIRPLEVRFKRRFNFRKADWSKFSDMLDDKIISVAPIPEEYERFIKIVKTCSRASIPRGCRTHYLQGITPDTAALLEDYYRLHNEDPFSEQTLQTAQSILSSISEAKKEQWIKLITEVDMGRSSQKAWRLLRRLSNDPSQTNTHANIKADQIAHQLLKNGKPKLSTKVGRKPIVRQPDNENNHLHEPFTSTELDMALNKCKNGKAAGLDDLRMEQIKNFGPKARCWLLKMMNNCIASCQIPKIWRKARVIAILKPGKDRNDPKSYRPISLLCHLYKVLERLILNRIMEKIDPCLIPEQAGFRKGKSCTSQVLNLTQHIEDGFERQQITGAVFIDLSAAYDTVNHRLLLRKTYNITKDYHLTRFIGNLLQNRSFFVEFQGQRSRWRKQKNGLPQGSVLAPSMFNIYTNDQPLPEGTESFIYADDRAITAQAGSFEMVEQKLSEALGALTAYYRENQLIPNPSKTQTCAFHLKNRQASRALRITWEGIPLEHCSTPKYLGVTLDRALTYKKHCFTIKQKVGARNNIVRKLTGTTWGSQPDTVKTSALALCYSAAEYACPVWNTSHHVKTVDVALNETCRIITGCLRPTPLEKLYCLAGIAPPDICREVAANNERTKALTSPAHPLFGYQPARQRLKSRNSFLRSTEILAGTPQQARVQKWQAKTRNLNQWLTPDERLPPGHTEDWATWKALNRLRSGTTRCRANLKKWGYKVESATCDCGEEQTTDHLLQCILSPATCTMEDLLTATPEALQVASYWAKDI
>Vingi-2_CE_pol#LINE/Jockey 2-1423 Fragment [Caenorhabditis elegans]
NMKQPAKRTVMTCLDQRAAFDKVPIKKLCVDLHESLNEAKISKWLTNYLSKRIIKANFGNHSSKWCTLLGGVPQGSVLSPNLFSFYMRNMPIHPKTEITVYADDTTILAQDTNPFKAGELIQEHLDLLYDFFNERKMSISAEKSTTTLFTCDTKEFKTKIPVNWNGAEIPTTNQVRLLGVHLNTMCGSKDHVAETRKKMMVSTNILKALSGTKWGCSKELLISTAKALVKPIAIYGAPAWSQLLSETNLNKLEAAYRNTLRTCCGLTSDTPIEHIYAEAQMMPLKEEFELAKQQTYIATTKSGTHPNRNLESRRNTERRSNRPREPPLNLQEATKTHLSRLKGTKAEAQKANHTRFVREFLNSAPPNRILGATPPPLNSSEESSLPKATRTELARLRCGHSLLIPRYKARIEGTPIGTCGCGDNEGGIDHYLSCGRSHPISKEKLWTSPMEAARALGLAYKPYDPGGGATTSV
>Vingi-2_HR_pol#LINE/Jockey 20-3181 [Helobdella robusta]
MRHSQTSSTSKTARIISHPAYQNTTGFVAHSPGQLTFLQWKCNGIKNKKDELQQHLETHKIHIAALQETKLTSRSKEPEFDGYSLYRKDRGLGQGGGLVMLIHNNIPYSIKQLPDSNPIESQAIFINTNNKDLTIINTYIPPQSVCPSHFTASISDLLSNPNTILMGDLNAHDSLWHSNIQDARGEALAVEIDDSDCGSLNLDSPTRLPNNSQPTSPDVSIASDSLISSIDWTVLTTLSSDHLPIHITLHADLEPTKTPKTTIVNFNKANWARYTEETETAFAKSVSPNDPSAAEKLFRHILSSASARNIPSGRRILSRPGLSREITDLMDQRDSLRSLDPTSDNINSLSTVIQQKINNLKLTRWKEYLSTFNKSTNTNRLWSTIKALNGKPKQYPNNAITFNNKPITNNKQMANLFNKTFTSFKTHISDKLNRFTTRTIKNLPLDDHQIFTPDQVSTAIKQSKPSKASGPDNLTIIHLKHLGPLGISFLTNIFNSSLITCKIPDIYKKAKIIPLLKPGKPDSDSKSYRPISLLCPAVKILEKCLLPILSKHLTLADHQHGFRPNYSTTSALTTITNDIANGLNHKRPAHRTVLAALDLSKAFDTVSHRILLSDLLTTTLPRSVIRWMSNYLHGRTASTTFRQQHSKQRIIHTGVPQGSVLSPSLFNFYVSKTPAPPPDIKIISYADDFSIYTTGPDAAILTRRLNSYLTELHDFFHNRNLEISTSKSTITLFTTYTSQYHYHPQVKVNNQTLPLEHNPKILGLTFDTMLSFSQHHKMSASKASKRNSILKALSGTTYGQDKETLMQTYKAIGRSVIEYACPAWSPLTSDTSYHRLQRSQNAALRVITGCHGIASEQHLHSECQMLSVKQHTDLLSSQFLLQCHNTSHPCHHITREPRPDRNIKHTLFSKYVQTVQTVLPTDTDSRALKAASSALHCSAAKLASETYHAAVLLNGWPPPTPKIDKAEESLPRALRRKLAQLRSGHCISLNSYRSKIDSRVSNICPICQLLPDDVPHLFSCPKNPTHFTIIDLWRNPVAVANWLRPRLDPSNDV
>Vingi-3_BF_pol#LINE/Jockey 177-2201 Fragment [Branchiostoma floridae]
CRITTYHRLLHQDFQKSVQDPLPKSQHSPISVLLTPVVKPITNRKPLPRLNYHRARWEDFTSKLEEGIEDIDPTSEGYETFQRLVWDVAKKTIPRGCRKQYIPGLTDSSKEIYDRYTKAYDTDPFAEETIELGENLLASLSEARKERWRETIGGLDMTHNSKKAWKTIKKLNADQEPDQRATAVTPNRVAKQLLDNGKPHNKERGYVKRMKEEMRRALEESDEIFFPFSREELLACLKHLKTGKASGLDGISAEMIRHFGDKALDWLLQLFNKGASSTQLPKLWRRAKVIALLKPNKDPTLPKSYRPISLLCILFKLYERLIMTRIKPTVEEQLCRDQCGFREGRSCCGQVLNLIQFIEDGFETGTITGAVFVDLTAAYDTVNHRALLTKVARMIKSTQIVCIIESLLTNRHFFVEMDGKRSRWRARAQKNGLPQGSVLAPMLFNIYTNDQPTFNNIRRFIYADDLCLATQARSFKTIEKRLTDALQVLSGYYKSWFLNANPGKTQVCAFHLNNHAASRKLKITWEGKELENTPYPVYLGVTLDRTLSFKEHIAIAKLRRKVSTRNSLLGNLANSTWGADPSTLKQTALALCSSTAEYCAAVWERSAHASKVDVELNRACRTITGTLKATPLPALYKLSGICPPSIRREAQTRVERDKQLRDPRHPLHGHQEVP
>Vingi-3_HR_pol#LINE/Jockey 2-3019 Nearly complete. [Helobdella robusta]
TNSSGQSVSGGTLRWQTTSTSTSISSCSNTSHPQTQSAGQLNLLQLNCNGIKNKQDEISQHLIKHNIHIAAIQESKLTADSKEPVFKDYALYRKDRGTGRGGGLIMLIHHSIPYTIKTLPPTSTTESQAITIGANGTDINIINIYIPPQSVCPSGFSASISQYLAIPNVVLLGDVNAHDALWYSSLEDSRGESLASEIENSGCGTLNLDTPTRLPSTGKPSSPDISVVSDSLIVNMEWSTMTALSSDHLPIHITLLSTFQQTASPKIKFINFAKANWEGFTSKTEAAFTKTPFPPNPSVAERSFCHILNVASDHNIPAGRLITHTPGLSKEITALIKKRDDLRANTPTSKDIAILTSEIQTKTDNLKRTRWKDFLGTFNKKTNTKRLWSTIKSLSGKPIQYPNNAVSFNNRSTTNIWQMANSFNKQFTAAKRHISNKSNRCTTKAIKKLSLDDHPTFTDFQVATAIKSSKPSKSIGPDNLTIFHLKHLGPSGISFLTNVFNESIRSCRIPEIYKKAKIIPLLKPGKPVGESKSYRPISLLCPAAKVLEKCLLPIITEHLTLANHQHGFRPDHSTTTALALMVTDVANGFNQKRPAHRTVLTALDLTKAFDTVNHQILLSDLLSSSLSRSIVRWLSNYLHGRSASTEFRQHLSKQRIIRSGVPQGSVLSPTLFNYYVAKAPAPPQDIKIISYADDFSIYTTGPDADILTRRLNCYLPKLYDFFNSRNLEISTSKSTVSLFTSHTSQYNYHPQIKINNQLLPLEHNPKILGLTLDTMLSFSQHHKMAAAKATKRNNILKALSGTTYGQDKETLLQTYKAIGRSTIEYACPAWSPLTSNSSLNRLQRSQNAALRLVTGCHGITSEQHLHSECQMLTVKQHSELLSSQFLLQCYKPSHPCNIITTQPRPHRDMKDTLISRWSSTVVAVLPANINNKSLKAASNTLHSNAAKAAAESYQAPILLNGWPPPTPKIDKSEKTLSRATRWTLAQLRSGHSILLNSYKNRQWTH
>Vingi-4_HR_pol#LINE/Jockey 167-3517 [Helobdella robusta]
MLLLRAGIESNPGPKIWICEICNKRVNKTHYSVRCRTCCKWTHLNNCATNLGSYYLCNNCPHPTTIPSSPVRGAQPNRPIIRNKTSATPNINPISHSDSKLNILQFNCNGLKNKSAEIAHHLSIHNISIAALQETKLSTRSAVPVFKNYAIYRKDRKSGRGGGLMMLIHHKIPYTIKQLPDTDTTESQGITIMADGTEINIVNVYIPPQSACPPHFCASIADLLEFPNIILLGDLNAHDGLWYSGISDARGETLAAEIDDSDCCTLNLDCPTRLPSNGQPTSPDLSIASISLTNCLNWSAVTTLSSDHLPIHISLDLRITPTKNPKVTFINLSKANWPGFTAESELAFQNTLFPNTVTAAERAFRRILGNAGDHNIPSGRLINSQPGLSKEVTELIRRRDALRLSNPSSDNISTLSNDIHNKINSIKTTKWKDFLSTFNRHTNPKRLWSVIKSLNGRPKLNPNNAINFNGKPISNGLDMVNLFNKSFTCFSQHKTNKLNRSINREAKRNCLSDHPTFTVDQVSAAIKTAKASKASGPDNITMLHLKNLGPLGLAFLTRIFNESLRSCCIPDIYKKARIIPLLKPGKSDEDAKSYRPISLLCPAVKILERCLLPFISDHLSPASHQHGFRSGHSTTTAVSLLSMDVANGFNQKRPAHRTTLVALDLSKAFDMVNHRILISDLLKSSLPSSISRWLSNYLHGRSAVTEFRNQSSKQRNIHTGVPQGSVLSPALFNYYVSRIPEPPSDIKVISYADDFSVYTTGPDVDILTQRLNNYLPLLINFFSLRDLEISTSKSSITLFTPHTAQYHYHPQVKVNGQVLPLEHNPKILGLTFDPMLTFTQHHKLSASKATKRNNVLKAISGTTYGQDKETLLQVYKAIGRSTKEYACPAWSSLSSESNLCRLQRAQNAALRIVTGCHKIASEKHLLSECQLLSIKQHTDLLSKQFITKCFDPQHPCHTLLSAELPPRVMKNTLMSKWGATVRSILHTNSDSASINMAIRNLHGMAAKAAAEAYHAPILLNGWPPPQPQIDSSEESLPRAIRRTLAQLRSGHSIILGSFREIIDGGTGNMCPHCHTHVDDVAHLFSCPANPTNLKTIDLWQNPTAVADWLRLRLTNG
>Vingi-4_SPur_pol#LINE/Jockey 175-3086 via tfasty with Ingi-2_SPur_pol, 1 frameshift. [Strongylocentrotus purpuratus]
MKMPNRAASQSNSAEGPLSRPALTVLSWNAEGISDAKEEVLAHMCKQMNCDVLCLQETHRGSDNPRPKIKGMKLAIERPHRQYGSAIFMNEKIRPDSTSYTHNNDIEVLNVTIKGLTISSIYKPPNISFSYPSTTTNRHIVIGDYNSHSTQWGYDTTGDDGALVETWAQNNDLKLIHDPKLPKSFASARWKRRYNPDLVFCSRLLAPTSRKFVAEPIPRSQHRPIGIQLTAVITPNKTPFKRRFNFAKADWPAFTEHLDHALTHLPADPKNYESFIDIVKKVSRTHIPRGCRTTYIPGIDEESSQLLANYTTAYDTDAFSEDTINLGEELISRISQRHRQMWQHMIETTDLRHSSRKAWATIRKLGIDSTRAQQHYNVTADEVANQLLKNGKAPKTTNSHRHKLPGVDQNMSLFTRPISEEELQKGISTLHVNKAAGIDDIRSEQIKHMGSVAQKWLLDMFNNCIENTCVPKQWLRTKVVAILKPGKDSNEAKNFRPISLLCQTYKLLERLILNRIGPHVDSQLNCEQAGFRPGKSTTGQLLNLTQHIEDGFQNNLITGAVFVDLSAAYDTVNHRRLQTKLHDITNDLKLTRFIQKMMQNRRFFVELDGQKSRWRKQKNGLPQGGVLAPTLYNIYTADIPSTENTRNFIYADDTCITAQHSTFEAVELHLNTALASLSEYYRANYLRANPSKTQVCVFHLKNREAKRELKLKWNNVQLNHCEHPVYLGVKLDRTLSFKKHIEKTIGKVESRNAIIGKLASSHYGADPKTVQSAAVALCMSSAEYACPVWSRSAHVKKLDTTLNNTYRKITGCLKPTKVEEIYHLAGIGSPNQRRTNTCLKERMKQATDDRHMLHGYLQPHKRLISRHSFLDSVPPPEQNPPPSAKPVLIKGLTxKWPEWQCLNRMRTRMGRCKVNMARWGYAHEGDTLCDCGETQTMDHLLQCGGTGCTDEDLSLVNETAIAAIERWKNLI
>Vngi-3_SPur_pol#LINE/Jockey 135-3119 [Strongylocentrotus purpuratus]
MMADTSTCVLQLNAEGPYPLKARSDYPHIAKENWVNVICLQETHCETEEQLHIEGFDLICFIPHKKHGIASYVKQGMKASTTGRSPVNSALQWSTFEAMGTHFCNLYKPPPVDVEIILFPKMPRNSFVCGDFNSRSTAWGYPXTNKNGKLIFEWLESQELVILYDSKDNPTFYSGSXKSWTCPDLSLVSSNIRHTCSRTVLPKFPRSGHCPIIISSDIKLQLSNLPKKRWNFRKADWPKFQELTNNKLTSRLPDPSTSNVNDSYSAFCSMLHQAAKLSIPRGRRHPYIPCWDEECDRLYESCAKSKTIEEREAVGNDLLXSLGEKRRIRWEEEVSEINFTHSSRKAWTTINKLTGRSSAPKQCPVTANSIASVLVNNGKWQDKTTEAKAHSRSVNSEIKNLLKSTPESTSMSEAFTLDEVETALKSIKSGKAPGNDNIHTEFXXNMSRKATSWLQAFLSTCMTTSTIPSKWKTAKVIAILKPKKPADEPKSYRPISLLSHIYKLLERLLLARIVDTVEEKLPTTQAGFRKGKSTTDQVVRLVNNIETAFQKKQKFGAVLVDLTAAFDTVWHRGLYLKTLQTIPDVRIVKFIMLLVQDRSFVLETSNGECSRKRKLRNGVPQGSVLAPILFNIYVSDMPKGECMQYSYADDTALGFDNHSFEAIKTSLEKDLKMLAEFFNRWHLKMSIPKTVSSVFHLANRCANRELNISLDGSRLNFVSTPKYLGVTLDRSLTFHEHAKATAQKTQARVSLLKKLAGTGWGANFTTLRTSTLALAFSTAEYAAPAWSHSTHVHKVDVVLNDAMRLISGTLTATPVSNLPILSGIPPAQLRRDAQYTKLAQKHDRDKCLVPAPSAFEGQRLPRRHFATQAAELPLEKPPSTLATWIAKRWSDLQWNSSTTNLKEFIPKPCAKPSGSDLPRKAWVNLNRIRTGVGRTQYFLHKIGAXSSPNCACGEIQTMDHVIDDCPIYKSPHGASGLRELDDETICWLNKDLPI
>4512630_Ath_pol#LINE/L1 gi|4512630|gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078.  (deleted after AA 1064) [Arabidopsis thaliana]
MDDKAYSRCLEVFPRRCFFLRTTGVDFSSETQFMAADYLKMMWRRTEFLDDSVVVSIVYAANEAITRKELWEELLLLSVSLSGNGKPWIMLGDFNQVLCPAEHSQATSLNVNRRMKVFRDCLFEAELCDLVFKGNTFTWWNKSATRPVAKKLDRILVNESWCSRFPSAYAVFGEPDFSDHASCGVIINPLMHREKRPFRFYNFLLQNPDFISLVGELWYSINVVGSSMFKMSKKLKALKNPIRTFSMENFSNLEKRVKEAHNLVLYRQNKTLSDPTIPNAALEMEAQRKWLILVKAEESFFCQRSRVTWMGEGDSNTSYFHRMADSRKAVNTIHIIIDDNGVKIDTQLGIKEHCIEYFSNLLGGEVGPPMLIQEDFDLLLPFRCSHDQKKELAMSFSRQDIKSAFFSFPSNKTSGPDGFPVEFFKETWSVIGTEVTDAVSEFFTSSVLLKQWNATTLVLIPKITNASKMNDFRPISCNDFGPITLYKVIARLLTNRLQCLLSQVISPFQSAFLPGRFLAENVLLATELVQGYNRQNIDPRGMLKVDLRKAFDSIRWDFIISALKAIGIPDRFVYWITQCISTPTFSVCVNGNTGGFFKSTRGLRQGNPLSPFLFVLAMEVFSSLLNSRFQAGYIHYHPKTSPLSISHLMFADDIMVFFDGGSSSLHGISEALEDFAFWSGLVLNREKTHLYLAGLDRIEASTIARKLRIAEYGPLLEKLAKRFRSWSVKCLSFAGRVQLIASVISGIINFWISTFILPKGCVKRIEALCARFLWSGNIDVKKGAKVAWSEVCLPKEEGGVGLRRFTVLNTTLWDGKKISFWFDNWSPLGPLFKLFGSSGPRALCIPIQAKVADACSDVGWLISPPRTDQALALLIHLTTIALPCFDSSPDTFVWIVDDFTCHGFSAARTWEAMRPKKPVKDWTKSVWFKGSVPKHAFNMWVSHLNRLPTRQRLAAWGVTTTTDCCLCSSRPESRDHLLLYCVFSAVIWKLVFFRLTPSQAIFNSWAELLSWTRINSSKAPSLLRKIAAQASVFHLWKQRNNVLHNSIFISPATVFHFIDRELENL
>4538901_Ath_pol#LINE/L1 gi|4538901|emb|CAB39638.1| RNA-directed DNA polymerase-like protein  [Arabidopsis thaliana]
METKNQDEFISKTFDWMGYAHRFTIPPEGLSGGLALYWKENVEVEILEAAPNFIDNRSVFWDKISSLGAQRSSAWLLTGDFNDILDNSEKQGGPLRWEGFFLAFRSFVSQNGLWDINHTGNSLSWRGTRYSHFIKSRLDRALGNCSWSELFPMSKCEYLRFEGSDHRPLVTYFGAPPLKRSKPFRFDRRLREKEEIRALVKEVWELARQDSVLYKISRCRQSIIKWTKEQNSNSAKAIKKAQQALESALSADIPDPSLIGSITQELEAAYRQEELFWKQWSRVQWLNSGDRNKGYFHATTRTRRMLNNLSVIEDGSGQEFHEEEQIASTISSYFQNIFTTSNNSDLQVVQEALSPIISSHCNEELIKISSLLEIKEALFSISADKAPGPDGFSASFFHAYWDIIEADVSRDIRSFFVDSCLSPRLNETHVTLIPKISAPRKVSDYRPIALCNVQYKIVAKILTRRLQPWLSELISLHQSAFVPGRAIADNVLITHEILHFLRVSGAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFHDKWIRWVMQCVCTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYLFILCTEVLSGLCRKAQEKGVMVGIRVARGSPQVNHLLFADDTMFFCKTNPTCCGALSNILKKYELASGQSINLAKSAITFSSKTPQDIKRRVKLSLRIDNEGGIGKYLGLPEHFGRRKRDIFSSIVDRIRQRSHSWSIRFLSSAGKQILLKAVLSSMPSYAMMCFKLPASLCKQIQSVLTRFWWDSKPDKRKMAWVSWDKLTLPINEGGLGFREIEAKLSWRILKEPHSLLSRVLLGKYCNTSSFMDCSASPSFASHGWRGILAGRDLLRKGLGWSIGQGDSINVWTEAWLSPSSPQTPIGPPTETNKDLSVHDLICHDVKSWNVEAIRKHLPQYEDQIRKITINALPLQDSLVWLPVKSGEYTTKTGYALAKLNSFPASQLDFNWQKNIWKIHTSPKVKHFLWKAMKGALPVGEALSRRNIEAEVTCKRCGQTESSLHLMLLCPYAKKVWELAPVLFNPSEATHSSVALLLVDAKRMVALPPTGLGSAPLYPWLLWHLWKARNRLIFDNHSCSEEGLVLKAILDARAWMEAQLLIHHPSPISDYPSPTPNLKVTSCFVDAAWTTSGYCGMGWFLQDPYKVKIKENQSSSSFVGSALMAETLAVHLALVDALSTGVRQLNVFSDCKELISLLNSGKSIVELRGLLHDIRELSVSFTHLCFFFIPRLSNVVADSLAKSALSVILSSSVSGG
>6587849_Ath_pol#LINE/L1 gi|6587849|gb|AAF18538.1|AC006551_24 Very similar to retrotransposon reverse transcriptase  [Arabidopsis thaliana]
METMNSRDVLVDLHTFLGYDRVYSIEPVGRCGGLAIFWKESVKIDIKFADKNLIDLQVQFGAVNFFLSCVYGDPDFKKRKIVWERLSIIGVGRRERWCMVGDFNEILHNEEKIGGPKRCESYFKPFKEMHEACGMVELASTGNRFTWAGRRYDLWIQSRLDRAFGNKEWLKNFPASNQQFLEMRGSDHRPVLLKLMASQDSYKGQFRFDKRLLHKPRVEETILQSWDPLNVVNDLCVSDRLKKCRGSQIIGGRIGLTNFWISMEVSISLMVLRGEVATAYFSNLFKSSNPSGFSHWFVGFEAKVIDQMNERLIRPVSSEEIKDAVFSIDPSSAPGSDGMSGLFFQHYWAIVGDHVTREVKMVFQTGVMPTEWNYTHLCLIPKVTHPVLMSDLRPISLCSVLYKIVSKVLVKRLKPLLSLIVSDTQTAFVAERLISDNILVAHEIVHSLHTMDKFAKEYMAVKTDMSKAYDRVEWCYLRALLLALGFHLTWVNWMMMCVSSVTYAVLINDTPFVFQVSNSQKPIIHHLLFADDSLFICKANKDEVVVLQSILGAYGAATGQIINLAKSSITFGSKVETVKKAEIQTCLGIFKEGDASTYLGLPECFSGSKIEMLDYIKVRLKSKLSSWFSKSLSQGGKEIMLKAVAMAMPVFAMSCFKLPKTTCTNLASAMADFWWSANDHQRKIHWLSWEKLCLPKEHGGLGFRDIGLFNQALLAKQAWRLLQFPDCLFARLIKSRYFPVGEFLDSDVGSRPSFGWRSILHGRDLLCRGLVKRVGNGKSIRVWIDYWLDDNGLRAPWIKNPIINVDLLVSDLIDYEKRDWRLDKLEEQFFPDDVVKIRENRPVVSLDDFWIWKHNKSGDYSVKLGYWLASNQNLGQVAIEAMMQPSLNDLKTQVWKLQTEPKIKVFLWKVLSGAIPVVDLLSYRGMKLDSRCQTCGCEGESIQHVLFSCSFPRQVWAMSNIHVPLLGFECGSVYANLYHFLINRDNLKWPVELRRSFPWIIWRIWKNRNLFFFEGKRFTVLETILKVRKDVEDWFAAQVVEKERRAEVGQSDQQVFSPRNVSPVVRWLPPPTDWVKCNVGLSWSRRNRLAGVAWVLRNDRGNVLMHSRRAFSNISSFLEAQFLSIVWAVESMVSHHVNRVVFGVEAAVLVGVINRPQAWPSFRFQSSEILLALNGIAVWKVVLESVSSNRGANLIAQSVTKECRLQSYVAVSFPAWLLGVFRDERVLTSVD
>21952510_Bna_pol#LINE/L1 gi|21952510|gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
MIDTFSWNVRGFNNSVRRRNFRKWFKLSKALFGSILETRVKEHRARRSLLSSFPGWKSVCNYEFAALGRIWVVWDPAVEVTVLSKSDQTISCTVKLPHISTEFVVTFVYAVNCRYGRRRLWSELELLAANQTTSDKPWIILGDFNQSLDPVDASTGGSRITRGMEEFRECLLTSNISDLPFRGNHYTWWNNQENNPIAKKIDRILVNDSWLIASPLSYGSFCAMEFSDHCPSCVNISNQSGGRNKPFKLSNFLMHHPEFIEKIRVTWDRLAYQGSAMFTLSKKSKFLKGTIRTFNREHYSGLEKRVVQAAQNLKTCQNNLLAAPSSYLAGLEKEAHRSWAELALAEERFLCQKSRVLWLKCGDSNTTFFHRMMTARRAINEIHYLLDQTGRRIENTDELQTHCVDFFKELFGSSSHLISAEGISQINSLTRFKCDENTRQLLEAEVSEADIKSEFFALPSNKSPGPDGYTSEFFKKTWSIVGPSLIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRITEFRPISCCNAIYKVISKLLARRLENILPLWISPSQSAFVKGRLLTENVLLATELVQGFGQANISSRGVLKVDLRKAFDSVGWGFIIETLKAANAPPRFVNWIKQCITSTSFSINVSGSLCGYFKGSKGLRQGDPLSPSLFVIAMEILSRLLENKFSDGSIGYHPKASEVRISSLAFADDLMIFYDGKASSLRGIKSVLESFKNLSGLEMNTEKSAVYTAGLEDTDKEDTLAFGFVNGTFPFRYLGLPLLHRKLRRSDYSQLIDKIAARFNHWATKTLSFAGRLQLISSVIYSTVNFWLSSFILPKCCLKTIEQMCNRFLWGNDITRRGDIKVSWQNSCLPKAEGGLGLRNFWTWNKTLNLRLIWMLFARRDSLWVAWNHANRLRHVNFWNAEAASHHSWIWKAILGLRPLAKRFLRGAVGNGQLLSYWYDHWSNLGPLIEAIGASGPQLTGIHESAVVTEASSSTGWILPSARTRNASLANLRSTLLNSPAPSGDRGEDTYTWYIEGSSSTSFSSKLTWECLRQRDTTKLWAAAVWYKGCIPKYAFNFWVAHLNRLPVRARTTHWSTNRPSLCCVCQRETETRDHLFIHCTLGSLIWQQVLARFGRSQMFREWKDIIEWMLSNQGSFSGTLKKLAVQTAIFHIWKERNSRLHSAMSASHTAIFKQIDRSIRDSILARITRRNFKDLLSQWFTFE
>22208464_Sbi_pol#LINE/L1 gi|22208464|gb|AAM94293.1| putative reverse transcriptase [Sorghum bicolor]
MILEASYLDSVPTAPDDAHVAPQSPAYIPVSALWWGNKQTNCTPTVQDEIVFGPGVQQQEPGGSQAGSMDEVGVISGLVTKMDIDTATERGPTAAAMTSSPAGVPPPPPENQQPPNLYTGLFCELPAPVLQAPAPGEPAPRARKMKKPTVSTRSSSRLAARPSAVPVAQRAQRKLMQELSFIDNNQQQAPDAAVTEYLDLYADDLPEQAVKAIQTAARLGNKRLVKILEAVETKLDAIDGLLAMEFLGNNYYSSFEFLPADNTRGGVLIAWDQDYIRGNLVRQDRFCLSIDITLRLTNHSFVLTTVYGPANNTEKNSFLAELIRCQPRGRPWLCLGDFNLICEAQDKNNNNINRAHMRKFRQALDASELLEIKLQNRKYTWSNGRKNPTLVHLDRAFCNLDWDEIFPSATLIALSSSLSDHCPLFLCNQQQPHRRATFKFESFWVRVPGFLQIVQTAWALPVRGSNPLTLLHNRLRNAAEALKKWSKSLFSEARLQLELANEVILRLDIAQESRPLSDAEVDLHRQLKLQLLGWAAIERSRRRQSSRIINIKEGDACTKFFHQRAKGRRKRNLITYLKNEGGLDQPFTLEELKHTVDELPAEKAPGPDGFNGLFYKKCWEIIKTDILAAMNSFHSLRAGPMRSLNGANITLIPKSDNAEDPKDFRPISLIHSFGKFVTKTLAIRLSPHIDRMISNSQSAFIKHRCIQDNFMYVRNLARAYHRKKIPALLFKLDISKAFDTISWEYLLELLEQRGFSARWREWLTLIFKTSHSTVLLNGTEGRQINHVRGLRQGDPLSPFLFILAIDTLHRILEVATANGFLSPLRGRNARLRLSLYADDAVIFINPIREEVTALFEILEQFGATTGLKLNIGKCTVAPIRCAEINLDHVLEGYRGNKTNFPITYLGLPLSLGRLKVVHLQKIVDKSRSRLAAWQGRLMNPAGRRELVRSVLSSMPVYLMTTLKAPKQLIADIDQMRRRFLWAGDNEISGGKCKVAWTAVAKPEEFGGLGIIDLDKFSRALRLRWLWFQWTKPERPWNGSELPVNADDVALFNAATTVTVRDGRKASFWHSSWIEGRAPASLWPRLYAHSRKKNRTVREALLNRRWVSDIAHNLNQDLLKEYFEFWLAIDRVRPALDEAGGDIIIWGLESSVCWPSPIPFPSLNLESLGTAKVQILLMAAVKNRLWTSARLQQRHWKNNYFCALCERNLETAHHLFFECPYSRLVWQAVSSWSSCPSLQPASWEDRSRLEDCFSQTLTTGEKKAHTLAILTLWSIWNRRNAVVFREDRKTTISLVVEIKDMARQWSLAGCKALRPLMVAHVISE
>22655797_Osa_pol#LINE/L1 gi|22655797|gb|AAN04214.1| Putative retroelement [Oryza sativa]
MTKELMIPQLKEQLREMVELLYEGKLDMRRLNYGVITLIPKVKDANTIKSFRPICLLNVCFKFLTKILTRRLSEIAQKVIGESQTAFIPGRQNLDGVVILHEVLHELKKEKKSGIIFKLDFEKAYDKVQWSFLFDVLHKKGFSDRWIQWVKMATIGGKMAVNINGEVKDFFKTYRGVRQGDPLSPLLFNLVADALSEMLNNAKQAVPHLVPGGLTHLQYADDTILFMTNTEENIVTVKFLLYCYEAMSGLKINYQKSEIMVIGGDEMETQRVADLFNCQAGKMPFTYLGIPISMNKLTNADLDIPPNKIEKRLATWKCGYLSYGGKAILINSCLSSIPLYMMGVYLLPEGVHNKMDSIRARFFWEGLEKKRKYHMIKWEALCRPKEFGGLGFIDTRKMNIALLCKWIYRLESGKEDPCCVLLRNKYMKDGGGFFQSKAEESSQFWKGLHEVKKWMDLGSSYKVGNGKATNFWSDVWIGETPLKTQYPNIYRMCADKEKTVSQMCLEGDWYIELRRSLGERDLNEWNDLHNTPREIHLKEERDCIIWKLTKNGFYKAKTLYQALSFGGVKDKVMQDLWRSSIPLKVKILFWLMLKGRIQAAGQLKKMKWSGSPNCKLCGQTEDVDHLMFRCHISQFMWCCYRDAFGWDNIPSSREDLLEKLNIQKDGQKSVLLACLAAGTWAIWLMRNDWVFNGKLTSDPSHLPPKLFLFFYSGDNWRRRSSGAIWTPQGPYCLPVLEGQQAQTPDEDLNDFQLILQGCLFGCSL
>25403380_Ath_pol#LINE/L1  gi|25403380|pir||H86435 protein F17F8.5  [Arabidopsis thaliana]
MNFSTFFFVDPYDFFIEFFFFKTFHRAVIERETKNMIKEIYCTDGRVVQGDDIMVEAEKFFKEFLQLIPEDFVGVEVRELQDLLQFRCTNSDNEMLTREVSSEEIKTVLFSMPKDKSPGPDGYTSEFYKATWDIIGQEFTLPVQSFFQKGFLPKGINSIILALIPKKLAAKEMRDYRPISCCNVLYKVISKIIANRLKLLLPRFIAENQSAFVKDRLLIENLLLATELVKDYHKDSISARCAIKIDISKAFDSVQWSFLTNTLVAMNFSPTFIHWINLCITTASFSVQVNGDLVGYFQSKRGLRQGCSLSPYLFVICMDVLSKMLDKAAGVRKFGFHPKCQRLGLTHLSFADDLMVLSDGKTRSIEGILEVFDEFCKRSGLRISLEKSTLYMAGVSPIIKQEIAAKFLFDVGQLPVRYLGLPLVTKRLTSADYSPLLEQIKKRIATWTFRFFSFAGRFNLIKSVLWSICNFWLAAFRLPRQCIREIDKLCSSFLWSGSEMSSHKAKISWDIVCKPKAEGGLGLRNLKEANDVSCLKLVWRIISNSNSLWTKWVAEYLIRKKSIWSLKQSTSMGSWIWRKILKIRDVAKSFSRVEVGNGESASFWYDHWSAHGRLIDTVGDKGTIDLGIPREASVADAWTRRSRRRHRTSLLNEIEEMMAYQRIHHSDAEDTVLWRGKNDVFKPHFSTRDTWHLIKATSSTVSWHKGVWFRHATPKYALCTWLAIHNRLPTGDRMLKWNSSGSVSGNCVLCTNNSKTLEHLFFSCSYASTVWAALAKGIWKTRYSTRWSHLLTHISTHFQDRVEGFLTRYIFQATIYHVWRERNGRRHDAAPNTPATVIGWIDKQTRNQITIIRQSGDRRYDKAFQAWLRARY
>25405244_Ath_pol#LINE/L1 gi|25405244|pir||E96519 probable reverse transcriptase, 16838-20266  [Arabidopsis thaliana]
MLASDHSPVIATIADKIPRGKQNFRFDKRWIGKDGLLEAISQGWNLDSGFREGQFVEKLTNCRRAISKWRKSLIPFGRQTIEDLKAELDVAQRDDDRSREEITELTLRLKEAYRDEEQYWYQKSRSLWMKLGDNNSKFFHALTKQRRARNRITGLHDENGIWSIEDDDIQNIAVSYFQNLFTTANPQVFDEALGEVQVLITDRINDLLTADATECEVRAALFMIHPEKAPGPDGMTALFFQKSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNICLIPKTERPTRMTELRPISLCNVGYKVISKILCQRLKTVLPNLISETQSAFVDGRLISDNILIAQEMFHGLRTNSSCKDKFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPAVSHLLFADDSLFFCKANKEQCGIILEILKQYESVSGQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGGMGSYLGLPESLGGSKTKVFSFVRDRLQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQLWRLITAPDSLFAKVFKGRYFRKSNPLDSIKSYSPSYGWRSMISARSLVYKGLIKRVGSGASISVWNDPWIPAQFPRPAKYGGSIVDPSLKVKSLIDSRSNFWNIDLLKELFDPEDVPLISALPIGNPNMEDTLGWHFTKAGNYTVKSGYHTARLDLNEGTTLIGPDLTTLKAYIWKVQCPPKLRHFLWQILSGCVPVSENLRKRGILCDKGCVSCGASEESINHTLFQCHPARQIWALSQIPTAPGIFPSNSIFTNLDHLFWRIPSGVDSAPYPWIIWYIWKARNEKVFENVDKDPMEILLLAVKEAQSWQEAQVELHSERHGSLSIDSRIRVRDVSQDTTFSGFRCFIDGSWKASDQFSGTGWFCLSSLGESPTMGAANVRRSLSPLHTEMEALLWAMKCMIGADNQNVAFFTDCSDLVKMVSSPTEWPAFSVYLEELQSDREEFTNFSLSLISRSANVKADKLARKIRTVPHHVTYVNNIPRDWLF
>31126775_Osa_gag#LINE/L1 Genomic ORF; L1_Td-like [Oryza sativa]
MQECSSRFYCEICESEDHVASRCPIFWSYVKPVAQLRGYTRDGLGFFHIPLSAGMRVKHEPKAALVKVTKGQMSVSSIISELERLIPGRWKWVVHDNGDGTFHTIFPSAAELSRMVEWGNVHTKVGEAEMEIVERGVGNEVKYVMPKVWVQCKGLPSELREYLIIWAVGSILGITKAVDMIFTRRYDIARLQVLVLDPSLIPDVVDVVIGDHLYELSFRVEPENGPKEPVPMEMENLDDGDLEKKKEGNVNQDLGKGAGLFDSGNNSKMGSGGQFSERGGPSAPSSQLNLIPESDGLTVSDEEFDGLDEETIMVDKAQIQESLVAKLSAIPEAVISPSRKSKRRASDSDQLVLERAEKLKAGKNLENLQARGNSVNNVSFTHFSNDQISAHHHNLGVIPSSKNVVLDDVINDLKCVENNRISEYACSSINQVCTPNVDTESLDDQLEDNFLLQHLCSEIMEEVMDFSEDCENSLKNTLNPMASSPNSKKKSKRGKNKKNNKNSFK
>31126775_Osa_pol#LINE/L1 Fragment; Genomic ORF; L1_Td-like [Oryza sativa]
MDFLLSFIRSFGMSLRMICWIFSEIFIMVLLPLFSLNFGTIILLPKCAEAMRIQQYRPICLLNVSFKIFTKVATNRIMSVAQKVISPTQTAFIPGRNIMECVVILHETMHELHRKNKSAVIFKIDFEKAYDKVKWSFVQQMLRMKGFSPKWCEWITSFIQGGHVGIRVNDQTGNNFQTYKGLRQGDPLSPILFNIVTDMLTLLIKRDKDVGSLNGVVPHLVDDGLSILQYADDTIIFLEHDLQQAKNLKLILSVFEELSGLKTNFHKSELFCFGQAKEYYDEYSNIFGCKFGSLPVKYLGIPMHVRKLNNRDWKMIEKRIEKKLSWKGKHLSVGGRLVLINSVLSSLTMFMISFFRY
>31126782_Osa_pol#LINE/L1 gi|31126782|gb|AAP44701.1| putative reverse transcriptase [Oryza sativa]
MGAVEEQLPFGMDDILQHSDINIRNFSLSVRLTQRSSNTAFLLTNVYGPTDDADKENFLQEMCEVAPSGQTPWLIMGDFNLIYEARDKNNLNLDRRLMGRFKAAINRCELRELRLQNRRFTWSNERDAPTLEKLDRIFCNPDGDMLFSNHNLQALSSSNSDHCPLLLSPTHQLLRKPTFRFENFWPRPPGFLDTVQTAWSQPVSASHPVKRLSSKLKATAKALRSWSNRILSDSRIQFHLVNELILRLDIAQENRALSPLEISLRKDLKLQILGLAAVEKARRRQRSTLTWLKEGDANTKFFHLKVNACHRKNFIHKLHRGNVIPETHEAKERALHEHFSSLMGQRLPRSCTLNWEELHLPQVTPEDLDSPFTEEDVWEAIKRMLAEKAPGPDGFTGTFFRCCWEVIKSDIMELLDKFHSLSGGNFGSINRATLILIPKKNDACTMGDYRPISLIHSLAKLLAKILAIRLSRQINKVISQAQSAFIITRCIQDNFLYVSNLAKKMHRSKQPTLFFKLDIAKAFDSVSWEYLLTLLEKMGFSTRWRDWVALILSTSSSRVALNGIEGERIDHHRGLRQGDPLSPYLFILAMDPLHRLLKIATDEGLLSDLADRSARFRCSLYADDTAIFIKPSRQDVDSLISILNNFGSATGLLVNLHKSSVIPISCGEIDLDEMLHNFTGPRGTFPMRYLGMPLMISRLRKVHRQYLIDKIKARLASWKKKLLSAGGRREPLKYDGLGVSNLTKMGRALRLRWLWYEWTSPDKPWIGMPTPCDEQDNELFAASTSVTIGDGRKALFWESPWACSSTLKAMAPNLFHHARKKKRTVAEALQDNKWIDDIRYNLTTVLVTDFFKVFEIIWTSGITLTQDIEDNIRWKWTTSGVYTTKSAYQIIWTADRLQQREWPNNYFCQLCFRNLETAHHLFYECPITRKIWDAIATRLGMPQLRPQNWSKTTILEDRWTQTVSTMPKEKRKGAKSILILLSWEIWKERNNMVFKNIETATQGIVEKAIDEIWL
>31431179_gag#LINE/L1 Genomic ORF; L1_Td-like [Oryza sativa]
MPWALLEGSRAGDTQAAQCCSTGLSQLGSVGFHGDGDMSARREERCGDGDSLHGAGWSIRDLIPKQVEEIELPSRWLWVPRGRVLEPQLGFPARKAEIHKFGGSARRIWKAARRRVDSRSFAEVVRGDSMERRPPNPRPDQWQSNKRRAVDEEQRDWGDRAPWEREEEELRGRLLGQNQRRPEGRWRPDERREGGRNWQGEKGRVWQGEQREGLDVRRFDKGRKEQVQEGPREDTIKCYNCGEFGHHLVRCTKPSLCYVCKSSGHISSHCPTMMGSCKRVEIKFKGYGVNEQGFYSMKIDVPAGEGSKTACRGILSVIRGKGSVPKVMAELSSLFKGLKWDWKVRQINDNDFLVDFPNPEARSKLTLVKSFDFDKFPIKASVTESKMTVDELYVVWVRMYGMPDFARSEASIKAVAELVGELEEVDGTSVAKGEFVKMKIECS
>31431557_Osa_pol#LINE/L1 gi|31431557|gb|AAP53315.1| putative reverse transcriptase [Oryza sativa]
MANKSMSGIHQIKTSFEFTRSAVAPTASFRVNRKVSCKDLGENHFLFTFHQASGKRRALEDGPWMFNKDLVVMIDLDETKLIEDMIFAFVPIWVRAMKLPLGLMTKETGMAIGREVGEFMTMDLEEDGSAVGQFLRIKIRIDIRKPLMRGVTLFVGADERPLWCPLVYEFLPDFCYICGIVGHTEKLCEKKLAEGEAPLFNKSLRFIPERKIWEGGSSDKTSGSRFQVQRKSGASSCKGSDAPSWQKEITDGSKGKEKGTQGEDEVTSPLKKGFPAERSDRPKKSLFQSKKGAAVEATKKGEAGKQVDSAMQAMHIDSVPDEGLVDGGASGVVMKKTFKRIPREERGAKNGHPKLTKPEKGGPEEGVGGKRRRSAGGGDEGEKPTKKAGLAIQPCLYGDAHSETKHRTWTTMRGLIDNPTTPWLMAGDFNEILFSHEKQCGRMKAQSAMDEFRHALTDCGLDDLGFEGDAFTWRNHSHSQEGYIREWLDRAVANPEWRAMFPAARVINGDPRHSDHRPVIIELEGKNKGVRGRNGHNDFRFEAAWLEEEKFKEVVKEAWDVSAGLQGLLVHASLAGVAAGLSSWSSNVLGDLEKRLKKVKKELETCRRQPISRDQVVREEVLRYRLEKLEQQNLLDVVDRKVSGAMNESLRAEFTREEVKEALDAIGDLKAPGPDGMPAGFYKACWDVVGEKVTVEVLEVLRGGAIPEGWNDTTIVLIPKVLANRLKKILPDVISPAQSAFVPGRLISDNILIAYEMTHYMRNKRSGQVGYAAFKLDMSKAYDRVEWSFLHDMMLKLGFHTDWVNLIMKCVSTVTYRIRVNGELSESFSPERGLRQGDPLSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTILQIYEECSGQVINKDKSAVMFSPNTSSLEKGAVMAALNMQRETTNEKYLGLPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQVIPTFAMGCFELTKDLCDQISKMIAKYWWSNQEKDNKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSRVLRAKYFPLGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRVGDGSKINIWADPWIPRGWSRKPMTPRGANLVTKVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSIPVHVEMEDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGKIKHFLWRMCHNTLALRANLHHRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKVWQALNLEELRSMLEQQTSGKNVLQSIYCRPENERTSAIVCLWQWWKERNEEKSPRTGECAVWRRPPLNFVKINTDGAYSSNMKQGGWGFVIRDQTGAVLQAGAGPAAYLQDAFHAEVVACAAAIKTASERGMSRIELETDSMMLRYSPRSCNKVAHELAAYGCNLQTVSSWAGCPPGLERLVSSDSAGLDQKIVEGDS
>31431911_Osa_gag#LINE/L1 Genomic ORF; L1_Td-like [Oryza sativa]
MERRPPIRPDWQANKRQAMEQGGGDWGIRDVREEEGLRRPLPNQPRVNPNVKPQGRQAAEMERGAGTMKIKCFKCGREGHHQANYTNPPLCYSCHNTGHIASHCPLISAKRCVKLCGFGIPGQGFYSLQVEISDAEVARAPVRGILTVIQGEASVSKVLAELKHLFVGLTWDWKIKQLNAKEFLKKFPSYEVRSQISTCKSFDFETSQIKASVVETGITEEAVDELVAVWVKIYGIPKMARSEDYIKSIVELVGEFEAVEVASIRRDGPVRVRVACKDPRELYFSIHLYINKVGYMIRWEPKGYLPYENRQNPPDDDDKDDKDDEGLEDDMNLDDEFKNHDISRGRPLKGEGSQHESRAGAFSAPPTYKGKVSSEQGGSIKMIASKKTSLLKHPDLFESCTSLVIWGDKKQEMIAEQESQELEAPELSQNETRPEFSTLLEFDEDLERCQIPTDSDIERLREEEDREEEDSFQEVSNRKKGKAKRTEPAVTSRMSLRHRELAVVPIPKRAKILTQRKNLEQPGNNSNPFAVFQLLDSVELKKIDVAANIDLGSNPVEIDNNIETLKAKELVQAKLAELNWKNQLEKQKPQAGDVSVPAKVIESEDVSSIKELETDLRVEKDGISPEPNKRGGVKKQRKK
>31431911_pol_Osa_pol#LINE/L1 Genomic ORF; L1_Td-like [Oryza sativa]
MKVLFWNIRGLGNSARGRQLRELIIEKEVDIICIQETKKESFSDRDLNTFQGNRIFNWSWKASRGASGGLLLGVNTNIAVVTETHAGAFFLSNVIKLNYDNSCWEIMVIYGPVDNNLKQAFLDELNWHILYRSHHVVIGGDFNLYRFASEKSNTNTNSRNMDMFNSFIANLDLREIYRSGPKFTWTNKQDSLVQEVLDRILVTTDWDDMYPTALLSSILRVGSDHIPLLLDTCEGIIVKSKYFKFESAWLAEESFKELVIQRLLPRDNSYILEFWNKKQSSLRRFLVGWGKNNRSKKLREKRTLQCKIEELDKKALTEELTSDEWNQRYSWENDLEHIYEMEELYWHKRCGEQWILEGDRNTEFFHRVANGRKRKCHITSLMDGETELTSKSEIREHIVEYYKTLFRDVPTANIHLSQGVWTNHLNLSDASKENLTRPFVMAELDKVINEAKLNTAPGPDGFSIPFYRAFWPQVKNDLFEMLLMLHNEDLDLKRLNFGVISLIPKNNNPTDIKQFRPICVLNDCFKFLSKVVTNRLTEVADEVVSQTQTAFIPGRFILEGCVIIHEVLHELKSKNSEGIILKIDFEKAYDKVNWEFLIEVMERKNFPKKWISWIKSCVMGGRVCININGERTDFFRTFRGLRQGDPLSPLLFNLVSDALAAMFDSAKAAGVLCGLVPNIFPGGITHLQYADDTVLFVANDVNQIVATKFIL
>31433139_Osa_gag#LINE/L1 gi|31433139|gb|AAP54692.1| putative reverse transcriptase (first 433 AA deleted; could be gag?) [Oryza sativa]
MEFYSDLLLGYAGSAPAFGKAVTIRSHPKVGDPVDWLLRGKSKPIKGRLAGADMIHIGLPELGSRWGRQRDRHGDGYPPEADDGWQGWIVEFGAGSGGIAGAESRRGLGCGREGGGGAQTEPDPWKYIGCGWDSKGPATHIEGDILEDEDDVVEVSLDADEANLVGQWTVLARYYSLKTPNQNALFDDMRRAWRLRADMNYKSLRDNLFIVSFSSEGDYKFVKDGGPWLHRGDALLVAEFDGLTSPSQVPLEVVPIWVRIYDLPLVLMTKDRGILYGSKLGHVREVDVEADGRNKHDFFRIRVDLPVNRALKTHIAIKINVQGNEEAFERKINTVKAVQSSGVARKLSFSGAGSASSTSSRHKKVEQWDEAVPPRMEAFDGFELNEKEGDANVDLQLADQTRNMQVSGGGSQDAEGLTKGRKTKQARPAPSGA
>31433139_Osa_pol#LINE/L1 gi|31433139|gb|AAP54692.1| [Oryza sativa]
MNCLSWNCRGIGNATTVQELCALVKEASSQFVFLCETRQPVDKIKRLRNRLGLRGFAGVSSDGMSGGLALFWHESVHVEILNKNERFIDAYIRLSPNDPLWHATFVYGEPRVENRHKMWSLLNSIKQSSNLSWLVIGDFNEALWQFEHFSRKPRSDAQMQAFRDVLDTCELHDLGISGLPHTYDNRRGGWNNVKVRLDRALADDEWRDLFSQYQVQHLVSPCSNHCPIVLKLHGSVPDQSWSKKKYKNIGRELEKTRKKLSNLLEAGTDKAAIRQTSDYMNELLYREEMLWLQRSRVNWLKEGDRNTKFFHNRVAWRAKKNKITKLRDAAGTFHRSKMVMEQMATQYFKDMFTADPNLDHSPVTRLIQPKVTEEMNNRLCSEFSEDEIANALFQIGPLKAPGTDGFLARFYQRNWGCIKNDIVRAVKEFFHSGIMLEGVNDTAIVLIPKIEQPRDLRDFRPISLCNVIYKVLSKCLVNRLRPFLDELISKNQSAFVPRRMITDNALLAFECFHFIQRNKNPRSAACAYKLDLSKAYDRVDWRFLEQSMYKWGFSHCWVSWVMTCISTVCDKGTRCDPFLFLFVADGLSLLLEEKVEQGAISPIRVCHQAPGISHLLFADDTLLFFKADLSQSQAIKEVFGSYATSTGQLINPTKCSILFGNSLPIASRDAITNCLQIASTEFEDKYLGLPTPGGRMHKGRFQSLRERIWKKILQWGENYLSSGGKEVLIKAVIQAIPVYVMGIFKLPESVCEDLTSLTRNFWWGAEKGKRKTHWKAWKSLTKSKSLGGLGFKDIRLFNQALLARQAWRLIDNPDSLCARVLKAKYYPNGSIVDTSFGGNASPGWQAIEHGLELVKKGIIWRIGNGRSVRVWQDPWLPRDLSRRPITPKNNCRIKWVADLMLDNGMWDANKINQIFLPVDVEIILKLRTSSRDEEDFIAWHPDKLGNFSVRTAYRLAENWAKEEASSSSSDVNIRKAWELLWKCNVPSKVKIFTWRATSNCLPTWDNKKKRNLEISDTCVICGMEKEDTMHALCRCPQAKHLWLAMKESNDLSLRMDDHLLGPSWLFNRLALLPDHEQPMFLMVLWRIWFVHNEIIHGKPSPSIEASQRFLQSYMKSLLEIKQHP
>32489466_gag#LINE/L1 Genomic ORF; L1_Td-like [Oryza sativa]
MLECKADLDYFVCNKKNSHRAERCPVLKLPKPTGNLFGFGKTETGFLQIPDFDFKFDTPSPVPTALVSIGGGHLSADNVQGELARLVRADWKWEAIPHEQNSYLVTFPSAEELKRMDDVEFRLKNHGVSLSISDWKSSTDVTPAYQLDEVWVHITGVPHKWRHYLAFWALGCVVGVTQEVDMLTFRQKGIIRVRVALLSRADLPITTDLLFGTMGYPVTFALEEEGFEPAIPLHDDPMDHDDDGVGDKDDTNNGGDDQIAKCPKKSEASSSSQGQQPISDVSSMQLALTPFGSCRPPPSKLSVVDRKSDSINFGTAGSVARPEAIQANPTAAVHGAVGVDVKPLTGDSARAARPALSRDQVVRRDKSPVLEAMMDRVANVKQQPVQSAVLIAASATTRGAKQRVHTAAADVDQQSAQPAALVAASVAIESIKQPVQAATTTVRVARHQPSTEQLGAVAAGNIQMLSRAAASPPEGAQHVQGAISADSKRDQQPERRWSRRSNKEMALGVASADVDSLTKAISRKAEKNLEIPATAQGTSKSPSISSTTNLCSMFNQVGISLGTTATAFDLSVNNLRHMHIDRSKVYPKKHNSTLSKEDFSHDEMDPFLTSDNEGDDYDNGLLTHLVKDISEVDLDEVDQSTELCDLFVSSRKSKPLNKKKGRKAKSVKSKKSNKVS
>34896428_Osa_pol#LINE/L1 gi|34896428|ref|NP_909558.1| putative reverse transcriptase [Oryza sativa]
MADTRSSAEDETKRPTEEETGRDGEMGSEPNLEERLKRLNMHGEEETDLDFSEELEGLIKDVRWLALFRVYTTKPFSHSALLNAMRNAWSSAQDISFKVMDSNLFMVQFQCLGDWNRVMEGGPWIFRGAPVVLKEYDGFTNVFDYKLDKIPVWTRIHGVPDGLMKKRELAERVAKKVGEQPFTVIVDEGRINPVKYLRARVFLDLSKPLVRFVPITIKERILYPRRRRKKIKGLIDENGCFQTDEDRMSNIVYGYFQNLFSAEVTQIDGSSLLDVQRKVTGDMNFGLLAPYTAEEVKNALFSIGDLKAPGPDGLHAVFYKRFWDMLESDLVKEVLDAINTMKIPDGWNDTTVVMIPKVDKPDRVTQFRPISLCNVVYKIISKMLANRLKCLLPEIISDQQSAFVPGRLITDNVLVAYECLHTMKKKKGRKVQYRVNFNGVLTEVIKPSRGLRQGDPLSPYLFLLVAEGLSSMLQGAENRGDLVGIRVCREAPMISHLLFADDSLILMQADKNNADHLKAILDIYCQNSGQKISEAKSSIFFSRNTAVEDKAAVCGSLDIMTEALNDKYLGLPAMIGVDKSDCFRHLIDRVNNRINGRKEKMLSTGGKEVLIKSIAQAIPVFAMSVFRIPKKICDCISEAIARFWWGDDENHRRIHWKAWWRMCIPKQRGGLGFRDLYCFNRAMLAKQIWRFLCDPDSLCARVMRCKYYPDGNILRARPKKGSSYAWQSILSGSECFKGYIWRIGDGSQVNIWEDSLIPSSSNGKVLTPRGRNIITKVEELINPVSGGWDEDLIDTLFWPIDANRILQIPISAGREDFVAWHHTRSGIFSVRSAYHCQWNAKFGSKERLPDGASSSSRPVWDNLWKLEIPPKIKIFAWRMLHGVIPCKGILADKHIAVQGGCPVCSSGVEDIKHMVFTCRRAKLIWKQLGIWSRIQPILGFDRSGSVLVEEMIRKGGKVSHLNAIGMTELILTGAWYIWWERRQLVQGERIQNPARSAMSIATLTTNYMLSNKKGSGGIGVVLRDHLGACVAASQAFLPHVLDAPMAEAFALRDGLSLAQHIGAKNVIVQTDCMQVVSTMMDGGFSATAAMSVFDDCKLMWDGFGTISIEHCNRNSNQVAHELARCLIGRKSSLVSFAAFQPWKCDSIPLPDQSCLLTPCAKLDAALSVQSAAVGHFAVPVDSSLR
>37700336_Osa_gag#LINE/L1 Genomic ORF; L1_Td-like [Oryza sativa]
MGPVGMRPYGRSRCDLLRPSLTQSAISFIPSREPSRPSYAAMAATDPPRRNQQRPLANHPPQQQINRTNSQEHHGGLVAQRGRSTQQGGWGAHGGRVDHRDQSSRGAHGGWDAPPNQGGHGALPSYRNNKGGRPGFGQRPQGRNFRPGFQGHGRDEQPRRDAGNQGVPVHQALTESTGKQDIQAGRGETAALSSKNSVEVTMAKAKKPRPVHCFRCKGSGHLLDGCKTVLDCFICNKKDAHVPNRCPILKEPKPTAALFGFSEQNMGFLRIQEFDMKLEPPKPAPTALVTILDGHLAASAVQNELARLIRADWNWKAVPHGDNSYLVTFPSEEELNRMDDVEFRLKNHGVSITIQQWQQDSDIIPVYQLDEVWVHITGVPHSWRHYLCFWALGTVVGTTQEVDMLTFRKKGIIRIKVGVLSRADLPIKTDIVFGKIGYRITFSLEEEGF
>37718853_Osa_gag#LINE/L1 Genomic ORF; L1_Td-like [Oryza sativa]
MQECLSKFYCEICESEDHIVARCPIFRSSVKPSAQLCGYAGDGLGFFHIPLSAGQKIKHEPRAALIKVSKGQMTVNAVISELERLIPGGWRWVVHDNGNGSFRTIFPSAAELKRMVEWGKVHTKVGDAEMQIVERGVGNEVKYVIPKVWVQCKGIPSELREYLIIWAVGSILGITKTVDMVFTRRYDIARLQVLVLDPSLIPEVVDVVIGDYLYELAFRVEPENGPEEPIPMDMDNIGDGDFEKKNDGNEKGDSGKEPGPGGSSQSKLGSGSMFYEKGGPSLHSIQVGLTADSGGLNLSDEEFDGLHDDVIGVERVQSQESLVAKLSAIPEAAVSPSRRSKRRASDSDQLVLQRAEKSKADKNLENLHVKGNLINDVSFLHFSNDQISASIKSLGIITSSPNVVLDDVINDLRSMEENRLSDHVRLSTTKGFSNNVDGDLVDDHFDDNFLLQHLCSEIMEEVMDSGGDCDNCLQTTLDSRDSPSNSKKKGKKGKNKKEKK
>38346464_Osa_gag#LINE/L1 Genomic ORF; L1_Td-like [Oryza sativa]
MAQVCKADLDCYICNKKDSHLATKCPVLKLPKPTCSLFGFGKTEFGFLQISGFGMNVQSPSTAPMALVSIHGGVLSREIVQAELAHRIRPDWKWEAVPHGDNSFLVAFPSFEELKRMDDVEFRLKNHGVSMTIIEWKTPDDVIPAYELDEVWIHVSGVPAPWHHYLAFWALGCVIGATQEVDMLTYRRTGVIRMKVFMHSSVVLPITTDVVFGKLGYPITYALENESFRPAKIMEVDQMDHDGDTQEDQDDSSRDGHHDQVHKKARNSENTTPPKEQSSDVTAMQLALTPLVNCQPLPPPRPVIADEKEVMTARSTPRIMTHTCSYKPDGIPSAPEQLRTQTTGSEHLPLLTPRSAAATRTTAVLSPVAHEEVLQEGKINTSSPVPQLTRASGSKAGSSTPRRRSMRSNVENLDGIARGDDDSLLKAMKRTAVRNLDDSFAAREVSAPTNQLHSASRIASFQQGTATRPSQSLPSLPHVNVASNLKSLGVSLGTSNVSFLLNVLKHIEVDRTKVATKPRENNQSISFVSEVDPFMTSDDEGDDIDGALLAHLVKDISEIDMEDVDQSNKICDLLVSTRKSKSSSKRKERKSHPKNPKTTKIVSS
>38346464_Osa_pol#LINE/L1 Genomic ORF; L1_Td-like partial protein [Oryza sativa]
MDHNKAPGPDGFPVEFYQKFWEVIKHDLLNLFNEFHSGSLPIFGLNFGVITLIPKVEEANRIQQYRPICLLNVSYKIFTKVATNRISSVADNLVNPTQTAFMRGRNILDGVAIIHETVHELHRKKLNGVIFKIDFEKAYDKVKWPFLLQTLRMKGFSPKWISWIKSFIVGGSVAVKVNDDVGPFFQTKKGLQQGDPLSPILFNFIVDMLATLINRAKTQGQVDGLIPHLIDGGLSILQYVDDIVLFMNHDLEKAQNMKSVLLAFEQLSGLKINFHKSELYCFGEALEYRDQYAQLFGCQVGNFPFRYLGIPIHCRKLRNAEWKEVVERFEKKLSSWKGKLLSLGGRLTLINSVLSSLPMYMMSFLAIPSGVLKKLDYLRSRFYWQGDGHKKKYQLAKWDIICRPKDQGRLGIHDLEVKNIALLSKWLFKLLTTNGMWQQLIRNKYLGSQPLSQAYWKAGDSHFWDSLMKAKQDFFRFGSFRIRDGSQIRFWEDKWLGNASLRDQYPCLYNCYS
>46097581_Uma_pol#LINE/L1 gi|46097581|gb|EAK82814.1| hypothetical protein UM06265.1 [Ustilago maydis 521]
MINPNTVRLNDAELPNVMGDYSSENFLYDAAGRLLVARLNCSGQQLNIACVYVPADSTERSAWLENTTDLLVSLEGRLLCDIVGGDWNMVTHIQDHTSTRRPNLQERHRLLTFLSYLNDETDLIDGYREHFPDSIMYTHTGPNSAARLDRIYVTPAISYRSCEWDTHVLPKSLNLDHLMVTARIKPYSPTKRGPGRFRFKCNLLKSQPVQARLTVLVNKLKESPVTPARWTLLKNELESTLSAIVRTKSQALTSARLRAKRRRTRLLLRRRASPNPSLERKLAAATVRESQLNEYATKAFAYSAMAKNRLLGEKPTKWFYSRCSASSLSNVSALKSSRTNTLVENPQDLPAVAADFYKSLFAVRLTNPSKGRNFIDLMPKLPRALSESTSVPITSTEVKAVLKGAATGKSPGPDGLPVELFKEVFQSSSDNAETLCEGLAQLFNSLLQGERADESFSVGVLSILYKNKGSPQDLKNYRPLTVANSDYKLFTGILAKRLCSALNGVVGPHQYAFLPGRLIDDNIRLVQSIIDENQGSETEGVYLLFIDQEKAYDRVDHKFLWRLLKQVGLPEPIRHAIKALYANVKLKVMVNGFASKPFPVRSGVRQGDPLSCILYVLFLEPLIRKIQTSEIEGITIPNSAPIKAVCYADDTVLVLKNQTEVDLARSILQDFCEGTGAQINWNKSSILKVGNPPPITIPEVSFVSPDNPYFHLGVPIGTNTEVQIQNLWDSVRLTFETIATRWSKAHLSLKGRIMVANSLMFSIPRYHLKFIPISPQTLSSLVKIYYDFIWDQKWLHKIHDLHALLPPEKGGIGSFDLSCVIEALSAEAVAKLESRDDLPWVQIQRRLLAKLHTRTRGEILSVITRPWVQRVSSRDLKMSELPSGIRHMWIPWLRLLKSDSDTISIGPPKTKQDVLNINFWYHRDLTVRPGQGARRFSNFSFRFLAELGISSIGEVWDPGTRTVILPATLPASKTQAMTQAITNLIRDLPAPWLELLNDTSLYTSSTSDQLCLSLGSGDHKKMAPLHKFRFREIYRQLVSQKTKEVNYDARVQPILQIYTNHTGKRGNLAMIWRAARHEFLTPKQGDLLWRLLHAKVKIGQDLHWLPRESQICPNCIIPSSIEHLWIECPAAQHLWCLVRTIWDKAWDITDPNTAKPAFPQIESRHDLACWLALAPVSDRFHARRWKVLFGTAVWSIWISYLRWSYSEDLTALFPASIRALFLTLLRNRFQEDRLLSLNSLYTNKTYNVEAFKLTWGQPPSTARAAISVMEILPPTS
>47203587_Tni_gag#LINE/L1 gi|47203587|emb|CAF92714.1| unnamed protein product [Tetraodon nigroviridis]
MPVVGTAPAELEKLTRRHGVKLNPAVACSVEEAALAVGDVVGHDSVRSASRMNGAIVIFVESTAKVGELVEKGVVIQDAFTTVSPLTNPATKVMISNVPPFIRNEALSKELSRYGQLVSPIRMVSLGCKSPKLKHVVCHRRQVMMILQDKQSDLNLSFSISVEGFNYMVFASSESMRCFGCGAEGHQVRSCPGNHGAAGGAPRSFAAAVVVANVPVGAEPVAPAPMEALAEEAPPTVEPSPAGEAPTPDQGSAIEGAPKTTVHPPVDDSLMSQSPSEDEETMGDVKVTRNKKKGKKKAAFEETLTEE
>47825035_Sde_pol#LINE/L1 gi|47825035|gb|AAT38805.1| hypothetical protein PGEC747E24.5 [Solanum demissum]
MDKATSTKSRPTIAKLRVELDLAKPRIREVVVEIRNAEGGLEMFTQKVEYEDLPEFCSHCITQGHTNDKCRVVLQRNQSKKVQVTKEAILKGRKAKDRLKTTDNNQQRLLKRLHPITKQLFLKQRKSKMKTKDGSEPQIEGEQTLINTIRDHIKSINNKREIAKQHKAKVQKERMGTRKNKNLKIADLSKLQEEQQRDAESQINMNVNTTRESSRKRKPTAKGKDGEVVKPNFGLDPDLADKIVGNKVKEKKLNSYKQNNSVSIQILDPGDKAVENQNNTWDEDLEMTQVGIEGSKSDDDIAKGYDKTIDFVDYNKTRQVQQAVTFYNNLSPRGIYESKGSVDISLRIGSMGSLERLNFMKQQYNLRMIILQEPMVGPEKIDVFRRKLGYNYCFKNINNKIWIFWSDQVNVNLVQNKEQQGTYVTHLSRACSDHAHLLIKLSNDQTNNIKYFKFLNVWTNHQDFLQAISEAVVQYFQKTFLSEQQRQNLEATSQLRTKITEQDNEMLIASPSIQEVQEATFYIDPDSAPGPDGYSGGFFQSAWSIIQEDLHMAIKTFIGGAELTKFYTHTCLVMILKVESPQYISNNWYSIIVNGDRQGFSKSDDTILFCNGSKETLEMFLRTLHIYENTSGQLINKNKSCFSVANNAKQNFIAKIKLITCMNHQEFPIKYLGCPLISGKKKTSHFNELVKNIINRIKGWHNKLLSTGGRVVLIKHVLLAIPTHLLVALQPTKGTLDNIEIYLARFFWSSKEEGGKHHWIAWRTLCLPFEEGWINIRRIGDVCNAFSYKEIAENEIKRILGRDEVNFWCDNWSQIGPLYKLLPTGFSVHNIMVKEILGNGKWNWSILQNQLPNQIKVMITGLGLNLNNEEQDKPVWSPTSAGNFTVTSAWNICRHKGIEITDFNKIWHKDIPFKMSFLTWKAIINRLPTGAKFKRLGIPLSPTCYCCTNNNIPTTLESAEHIFMIKVENSWENINQIFDVSINHKNVIRVNWIKPPTMFAKLNTDGSCVNGRCGGGGILRNALGQVIMAFTIKLGEGTSSWAEAMSMLHGMQLCIQRGVNMIIGETDSILLAKAITENWSIPWRMYIPVKKIQKMVEEHGFIINHCLREANQPADKLASISLSTDVNHVFKSYANLPSLVKGLVNLDRMNLPTFR
>50901338_Osa_pol#LINE/L1 gi|50901338|ref|XP_463102.1| putative reverse transcriptase  (first 300 bp deleted) [Oryza sativa]
MKTISALVEKGGCKAIRLNGKGKGKLNCFILNWNVRGLNSQAKQDNVKLLVDQMKATVVCLQETKMEMVSDSVITQFLGQRFVQEFAFLPAIGTRGGILLACNHNFFSISYVILKDHSLTASVTMKSDNTCWSLTVVYGPQAETEKNLFLDELRSLESMVHPAWLLLGDFNLIYLASGKNNDRLNRRMMQRFKGTIDRLGIKELALNGRRFTWAKDGANPTQTKIDRAFCKPDWDILFGSAYMAALSSSSSDHAPLFLVGCEQRELNTSFRFEAYWLKFPEFLEVASESWNRPIRGSNPFAKLNLKLKRLARDLKRWSKFRIGDIRLQHAIANEVIFQLDVAQEERALTDEELLLKSTLKSRVLGLATLVKIRIRQRARLTWLKCGDVNSKFFHLKANSRKRKNFIPALITPSGIAVTTEQKEAELERYFSQRLGQYVPRSLTLNWSELSLPSLDLSEVEEDFTEEELKEAISNLPPQKAPGPDSYIGAFFKKAWEVIKSDLLQAINHFSSLNSDRLEDLNSANICLIPKKGEATRVEDFRPISLMHSFAKILAKMLANRLAPKLHELVSPNQSAFIRKRAIHDNFLYVQNMIKNFSRKKKPMLFIKVDISKASDTVNWPYLLETFAQISGLHTNPGKTEIYLIACNNLDLGNLLSSFMGNLKTFPCNYLGLPLHTKKLRKIDLQPLLDKMKWVFKRIDRYRRAFLWKGDDPEKVSAGSSLVNWQQVCKPKDLGGLGILNLEKFARALRLRWLWYNWKEDQKPWANMDLPCDEMDRCLFKAGTKITVGNGIKISFWNDNWKDGQSPKDIAPAIYRLAKRKSNSLKKELEDNHWLAMLHPITSLVEIEELIQLGGLLQNVNLVAGQTDDISWRWTANGQYSAKSAYLAQFQGSNALIEFTPLWSAFAEPKHHFFGWLILHQRTLTAENLLRRHWPCDWICSLCNSAFEDAAHLAKECPFTVTVWTQICIWMNFQLPQHHLQGNLSDWWSSFCTISPRQNRNKVLGALITTWWNVWLERNRRIFQQISKNELQVAILVKENIDLIEQSRI
>50931797_Osa_pol#LINE/L1 Genomic ORF; L1_Td-like [Oryza sativa]
MLGGDFNLYKFASEKSNSNIDVRCMDMFNKFISDLDLREVHIIGPKFTWTNKQYCPTQEVLDRILVSDDWDDRYPNSLISSVLRVGSDHTPLLLDTYELVVEKCRYFRFESAWLAVEGFKDLVGKKFPDRDGSYILEFWNKKQVEMRRFLTGWGINKQSEDRRAKLSLQKKLEEIDSKAVDAELNADEWRHRYELEDALEHIYELEELYWHKRCGEQWLLEGDRNTEYYHRIANGRKKRCTITSLMDGDRELTTKEDLKHHIVEYYKSLFRSESSSSIHLSQGVWVDSLCLKEEDKNTLMRPFTIEELYKVLREAKPNTAFGPDGFSIPFYRAFWPQLRPDLFEMLLMLYNEELDLKRLNFGVISLIPKNSNPTDIKQFRPICVLNDCFKFISKCVCNRLTEIARDVISPTQTAFIPGRFILEGCVIIHEVLHEMNRKNLEGIILKIDFEKAYDKVSWDFLIEVMVRKGFPSKWVNWIKTCVMGGRVCININGERTDFFRTFRGLRQGDPLSPLLFNLISDALAAMLDSAKREGVLSGLVPDIFPGGITHLQYADDTVLFVANDDKQIVATKFILYCFEEMAVLKVNYHKSEIFTLGLSDNDTNRVAMMFNCPVGQFPMKYLGLPIGPDKILNLGFDFLGQKLEKRLNSWGNNLSHAGRAVQINTCLSSIPSYAMCFYQLPEGVHQKFGSIRGRYYWARNRLKGKYHMVKWEDLAFPKDYGGLGFTETRRMNTALLAKWIMKIESEDDSLCIELLRRKYLQDGGFFQCKERYASQFWKGLLNIRRWLSLGSVWQVGDGSHISFWRDVWWGQCPLRTLFPAIFAVCNQQDILVSQVKEGVRIACLLEGPLVLRRFQSGML
>51870005_LDV_pol#LINE/L1 gi|51870005|ref|YP_073558.1| RNA-dependent DNA polymerase [Lymphocystis disease virus - isolate China]
MACKRIDKRWKLDINLLSDKSFIEFIHHDLNEFLIIHNNVSPNLKWETLKAYLRGSIIKFSISKKSTIKQLPIIKAPQLKLKTGKISIDRDEINDEFKRYYSDFQQQSSIELNYFWTDLLVLSSAKRKFLNAPLNVSEIIKAVKELRRKKSPGPDGFPVEFYASFIEILAPLLTTVYNYSFKEKKLPETLNQAQIIPILKPGKNPLELSSYRPVSLLNCDYKILAKILASRLEKFLHVFISPDQTGYVKNRRAVYNIHRLLEIVYSSEAFESECLILTDAEKAFDFLKRSYLFETLKRFGLGENFIAWVKLIYDKPSACVWTGDRQSIFFLLKNGIRQGCPLSPLLFIIAMEPLACSIRKNPAIKGIIRKGKETKILLYADDVLIFVSQIETVPLVLKILERFKIVSGYSLSLNKSKIVPLGQAKIKKSISLTISIDDFIYLGVTITKLKKNLFKHNLKTLKQKGDIKFAHVVYVMQSILPFI
>55168220_Osa_gag#LINE/L1 Genomic ORF; L1_Td-like [Oryza sativa]
MLLSVAQLLDLQLNLLLSYVVMLLMVWVFFHIPLSAGHKIKHEPRAALIKVSKGKLSVNDVIVELERLIPGRWRWVVHDNGDDTFRTMFPSAAELRRMVEWGKVHTKVGEAEMEIVERGVGNEVKYVIPKVWVQCKGLPSELREYLIIWAVGSILSITKAVDMLFTRRYDIARLQVLALDPSLIPDVVDVVIGDHLYELAFKVEPESGADEPVPMEMENVDDGNLEEKDDGNMKQVLGKEVGGDSGNNSMMGSGGQSSGVGGSSVPSAQLSLLPEYDGLTTSDEEFDGLEEEPVVVEKLRTQESLGAKLAAIPEAVISPSRKSKRRASDSDQIVLERAEKLKTEKNLVNMQAKGKSQNNISFLQFTNDQICASLDNLGVITLGTNFLLDDVINDLKSIEEKRLGNFVCSSVNQATTSIVESELLDDHLDDNTLLQHLCGDIMEEVMDLSGVDDNYSHATLNFLVPSPNTKKSAKKGKKKKSIKQ
>55240201_Aga_gag#LINE/L1 gi|55240201|gb|EAL40375.1| ENSANGP00000027756 [Anopheles gambiae str. PEST]
MLDVEKAFDNVWHDGLIYKLLHSALSTITTKIKLKLDQFCGLTSKTESFMSGSLMLDAGTHLRPTLEETVNFLFEVLETSVDVKMVQRNTAQSAVYVTMPTLERAKSIVKEHSGKHCITHEGKQYPIPVEMVDGATEAKIRDLPPGIPDENVSAELNRFGEVFTIVPGVWGAEARLAGIPSGVRIVRMKLAKPIPSFITVCGEMTGVLYRGQQ
>57863897_Osa_gag#LINE/L1 gi|57863897|gb|AAW56928.1| unknown protein  (one ORF) L1_Td-like [Oryza sativa]
MRGQMNKGGKLQQYRPVQKEKNQTEEKIATSAVTPQTATQQPTPPPNSRTGMQTNPQRIFCHRCKGFGHMARDCSNVVFCINCAKPTHRTEDCIYDKQPRPMAKLVGYGAPGLGCILIQNTKPDPPKEHNNPLAMISTVFGGELTEAQLEQGFTQQFKWNWVWKAKAMPNGSFQMRFRNKIKFDELANFDYFNVKGTDVQVNVKEWTQKSEAVGKLHIVWVKITGIPEEMKGYQALYEIGSNLGPVLEVDMATFRASNVIRAKVGMMELGVLPLKLVLTSPKGLLFQAHFSLEEVVELGWFSDQLDDTFEKIEIQENTLEGSSQREGKQVVVVDPMTEDHHVSKTGNGLLKFVRSKSWCQN
>62733693_Osa_pol#LINE/L1 gi|62733693|gb|AAX95804.1| retrotransposon protein, putative, unclassified [Oryza sativa]
MRGRKQNKESEMKKVKENLMREIKNIEDEADHRNLSSDEWQKRYFLEGKLNQIYFDEEKYWQGRSGEKWLLEGDANTSFFHGVANGRKRKSLIRALEEDGRIIEEPAELKAHIYQFYKNLFGAEVAPKIFLSQDMWMHRGRLSQEEREHLIRPFTFEEMDQALKQMKTDTAPGPDGFTVSFYRAFWPQLRDQFKEMLDLLFEGRLDLWRINYGVISLIPKVKDANTIKAFRPICLLNVCFKLITKILTNRLTLVAHNVIGESQTAFIPGRFILDGVIILHEVLHEVKKTHQSGIILKLDFEKAYDKVQWSFLFDVLQKKGFDDKWIKWIKSATIDGRVAININGEIDQYFKTFRGVRQGDPLSPLLFNIVADALSEILLKAKEAGHLEGLVPHLVQGGLTHLQYADDTILFMTNNDQNVITTKFILHCFEAMSGLKINYQKSEVIVLGENPEETKRVADLFNCKCGKFPMTYLGIPISEGRLTAADLAIPPDKIEKRLSTWKCGLLSYGGKAILVNSSPMYMMGFYMLPEQTHQRMDSIRSRFFWEGIERKRKYHMVKWEALCRPKDFGGLGFLDTRVMNKVLLCKWIFKLESGQKDPCCDLLRRKYMMNGGGFFQSSTEGCSQFWRGLHEVKHWLKLGSCYDLGDGSATRFWDDVWLGDTPLKIKFPYIYSIVADPGKTVSQLWSSDGWRIDLRRSLGAEELVEWEQLLADLANVHLSTDRDRMRWKLTKSGQFSTKSLYREMTFGGIRDIKMQELWKTPMPLKIKIFVWLMLKGRIQAAHQLKKMKWNGDPLCKLCGAEEDVDHLMFKCAPARFLWCCFRDVFHWDHVPSSRREFMNILMTMGGDRE
>ATLINE1_1_gag#LINE/L1 17-1609   [Arabidopsis]
MESGARVLGEKAQDATMTDVGEKGRPPGDPPDKSSSWANKVRGGHVGGMLAPTDVLSDEFVRARLSLTFPDGEDGEPLIIIGLEVFEAMNSLWKNCMLVKVLGRSVPIAVLSKKLRELWKPIGAMHVVDLPRQYFMVRFESEEEYLTALTGGPWRVFGSYLLVQAWSPDFDPMKDEIVTTPVWVRLSNIPLNLYHPSILMGITGGLGNLIKVDMTTLTCERARFARVCVEVNLRKPLKGTVMINEDRYFVAYEGLTNICSGCGLYGHLVHNCPQVKQSNVVKATQSIVAVETSLAPVSQSVDGFTTVGQSGRRGTKQPATVVFAAGGTRSGLGKSQRDLGKKSDSANISVTNSFGSLLTDMEGTDLSADVVELEGNKENEEILIQSRNEKKVIHGNVVPLGENSKRANEGARIGKKDKRNGLKKVAVSNGPRPNQMNHVRPTRGLVFGPTRGEMERSFNGKRLRIEEKNPGRPGGVFTQTGDGSSNVENSGQGRVVKNMVGQLDSNQSTMPMEETMRSVPQGSGNGNMVA
>ATLINE1_1_pol#LINE/L1 1649-5782  1 stopcodon [Arabidopsis]
MMNCLLWNFQGANKPHFRRSIRYIVKKFPTEILAIFETHASGDRAGSICQGLGFDKSFRVDAVGQSGGIWLLWRSEIGEVTIVQSTDQFIFATVDTGDEVLNLIVVYAAPSISRRSGLWDQLRDVIREAIGPIVIVGDFNSIVRLDERTGGNGQLSPDSLAFGDWINTSSLIDMGFRGNKFTWKRGKTESNFVAKRLDRVLCCAHSCLKWQEAIVTHLPFLSSDHAPLYVQLSPTVRGDPRRRPFRFEAAWLSHEGFKELLNVSWNRNLSTPIALQELQKILKKWNKEVFGDIQQRKEKLVVEIKEVQDLLDVTQTDELLQKEEQLIKEFDIVLEQEETLWYQKSRERWIVLGDRNTTYFHTSTVIRRRRNRIEMLKNNEDQWVSDSRELEXLALDYYSKLYSLDDVEPVVTKLPPEGFMSLSQADKTELLRCFSAGEVEKAVRCMGKFKAPGPDGYQPVFYQECWEVVGESVVKLVLEFFETSVLPSRLNDALVVLLPKVGKPEKITQFRPISLCNVLFKIITKTMVERLKPLMTNLIGPAQASFIPGRVSTDNIVLVQEAVHSMRRKKGVKGWMLLKLDLEKAYDTIRWDYLEDTLISAGFPEVWVRWIMCCVSGPEMSLLWNGERTDSFKPLRGLRQGDPLSPYLFVLCMERLCHLIERSIDNKQWKPISLSQGGPKLSHICFADDLILFAEASVMQIRVIRKVLETFCIASGQKISLEKSKIFFSGNVSRDPSKLISEESGIKATNDLGKYLGMPVLHKRINKDTFSELLEKVSSRLSGWKERTLSFAGRMTLTKAVLSSIPVHTMSSIALPQSTITRLDKASRSFLWGSTAEKRKQHLVSWKKVCLPKKDGGLGIRNAKLMNKALIAKVGWRLLQDQSSLWAEVFRKKYKIGDLRDCQWLRKKGTWSSTWRSIVTGLVDVISRGTCWVPGDGHHIRFWRDIWVSGKPLWEDGQGVVPANLETESVRSLWKDDSGWDISRISPYVSESRCLELRAIVLDHETVARDRISWNESQNGQFSVSSAYNMLSWDDSPRPNMEKFFNRIWRVKVPERVRAFFWLVVNQGIMTDAERYRRHIGESEICQICKGGVETTLHILRDCPAMSGIWTRIVPQRKRRAFFDKTLFEWVFDNLHEETPFQESSWSTVFAMAVWWGWKWRCGNIFGEKRKCRDRVQFIKDVAKEVFVANARATVLNGIPTRVERQIGWVAPSTGWYKVNTDGASRGNPGLATAGGVIRDGAGNWCGGFALNIGRCSAPLAELWGVYYGLYLAWTKALTRVELEVDSELVVGFLKTGIGDQHPLSFLVRLCHGLLSKDWIVRITRVYREANRLADGLANYAFSLPLGFHSLIDVPDDLEVILHEDSLGSTRPRRVRL
>ATLINE1_2_gag#LINE/L1 2-1579  [Arabidopsis]
MGERGDFRVPVTSSQDAPMMDIGDGGRPSGDPLDVVESWASKVSGSNAGGRLSPERVLDKEFVMARMRLEFPDGEDGEPVITIAQEVLDVMNGLWKQCIIVKVLGRHIALPALNKRLREMWNPKGGMHVLDLPRQFFMIRFDLEDEYLVALTGGPWRAFGSHLMVQAWSPDFDPLRNEIVTTPVWVRLSNIPLNLYHETILLGIVQGLGKPIKVDLTTLHHAKARFARVCVEVNLSKPLKGTITINGERYFVAYEGLSNICSGCGIYGHLVHNCPRRVVERTVAPVTVEVPVNVSGGTPQDDGFTVVRRTGRKGGAPENSGVATAGRLSTNLERNLRDISGRANMESIDTSNSFGNLEEVIEGSVREVAASVDANKENMMNGNYAKKGKSVAQGKAWAPVDLMNKIRAGKKDKTAGGKVGEANGPKPRNGNSNRPVRGLVFGPTRKEIELSGSGKRLRVDESSVYRQGGGGSPEKESRGVDGVSMSVAGEAVAKSSLVDLAEAPQNREVEMQNGLSAVVATSLAA
>ATLINE1_2_pol#LINE/L1 1619-5752  [Arabidopsis]
MMDVLFWNCRGANKPLFRRTIRYMLKKNNIDILALFETHAAGDRASRICQKLGFEHTFRVDAVGHSGGVWLLWRASVGVVTVVASSEQFIHAKIVSETETLHLIVVYAAPSVSRRSGLWGCLKTAIEGVDGPLVIRGDFNMIVRLDERTGGNGRLSLDSLAFGEWINELMLIDMGFKGSQYTWRRGRLEENFIAKRLDRILCCPQARLRWQEATVTHLPVVASDHAPLYLQLSPAFRGDPKRRPFRFEAAWLLHDGFKELLQLSWNNSLSTPEALNGLQIRLKKWNREVFGDINQRKDRLTTEIKSVQDLLDVVQTDALLRKEEELIKELDVVMEQEEVIWFQKSREKWVLDGDRNTKYFHTSTIIRRRRNRVEMLKSDSGVWISDPQELEKLATAYYKRLYSMEDVDQEVEMLPPGGFARLTEREVAELTKPFSAVEVEASVRSMGKLKAPGPDGYQPIFYQDCWEVVGQSIARFVLDFFVTGILPEGTNDVLMVLIPKLAKPSKIMQFRPINLCNVLFKTITKTMMRRLQNVMSKLVGPAQSSFIPGRLSTDNILVVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRIRWDFLHDTLVSVGLPDCWREWIMKCVAGPSMTLLWNGEKADPFKPARGLRQGDPLSPYLFVLCMERLCHQIEISVASKEWKPINLSQGGPKLSHICFADYLILFAEASVAQIRVIRQVLERFCVASGQKVSLEKSKIFFSDNVSRDLATLISNESGIKATKDLGKYLGMPVLHKRINKDTFGDVVERVASRLAGWRCRFLSLAGRITLTKSVLSSIPVHTMSTISLPQSILNKLDSISRSFLWGSTMEKRKQHLIAWDRVCLPKQDGGLGIRCSTQMNTALLSKIGWRLLHDDVSLWSKILRSKYRVGDIHNRAWMVSKGTWSSTWRSVVVGLKEVVFSGLSWVLGDGVDILFWKDRWMSQTPLCEVVTCELPANWEAVKVVDVWRDGVGWDLQRLTPYFTEGMKLKLLSLVVDNVTGARDRLSWGGCSNGNSTVKSAYSFLSLDWSSKQQMARFFSRIWRVVAHERVRVFIWLAANQVLMTNVERYRRHLCDSSLCSVCKSGEETILHILRDCPAMAGIWTRLLPARRLSSFFSKSLLEWIYANLGEEIEINGCPWAVTFSQAIWWGWKWRCGNIFGENRKCRDRVRFIKDRALDVWKAHVHKMGVTTRTAREERLIAWSPPRVGWFKLNTDGASRGNPGLATAGGVVRDGDGNWCYGFSLNIGICSAPLAELWGAYYGLNIAWERGVTQLEMEIDSEMVVGFLRTGIDDSHPLSFLVRLCHGLLSKDWSVRISHVYREANRLADGLANYAFLLPLGFHLFNSTPDNVMSIVHDDVAGSAYPRNVQV
>ATLINE1_4_gag#LINE/L1 389-2383  [Arabidopsis]
MSKRIRPSWYRESPPKQPPFAFEPEEEDDVVILPQVDNSALLARLHLSLVGRMFHQGGRSTKALLSFLPKENIWDVEGRVRGVSLGDARFQFFFESEVDLQKVLNKRPCHFNKWSFALERWEPHVGTSFPNIMTFWVRTEGIPAEFWDEEVLRNFGNSLGLVRRVDPSKGRILISVTADVPLRFNKNAQLPSGTVVKVKLSYEKLFRWCSYCRRICHELEQCPLLDAEQKAVLSAEESQRNLRLSLRDGDSSQARLPLQSFPESNRSRSERNHLPLLNGPPSSRPYHSRGVIRREENNLASRSGRNRSHRQPYPASLNQYPAEHASKLNRPHGAVSHKRPASPVVTRNAGVDDGRKRRFGDSFSKEKSSAPPNKQSSPLLSDSQLTLSDTVLAPSRAKQITSSPTYVRERPFRLNLSKKASALEKGKGKVVEHPTPLLGESSVVGSSAKKSLNFEPSEPAPKNLDTPISVTSKSLEPQLEKRKSWYDMTVEEDEATARSLESGPDTILAAKFSQVVSFASPSVVSPSLSVLPSPAAPEDEWNESLNPLSEALNLDWTEEDEAAYHLADDLDVDADDLLSEELQESLQDQSGLVIPGSHVAPISELQPEKLKSLIVSSLQSEEVGPSIAIPRRKDSKKKVVPHSRKAQLNSGLCLNLASKKIHHI
>ATLINE1_4_pol#LINE/L1 2551-6638  via tfasty with gi|6598399|gb|AAD03, 3 frameshifts.  [Arabidopsis]
MRLISWNCQGVGPKTTSRRLEEMCRMYSPGFLFLSETKNDLVYLQNVQVSLGFDCLKTVEPIGNSGGLALFYSRDYPVKFIYVCDRLIDIETIIDGNRVFITFVYGDPVVQYRELVWKRLTRIGIVRSEPWFMIGDFNEIIGNHEKRGGKKRSESSFLPFCCMIENCGMIDFPSTGSLFSWVGKRSCGVAGRKRRDLIKCRLDRAMGNEEWHSIYSHTNVEYLQHRGSDHKPLLASIQNKPYRPYKHFIFDKRWINKPGFKESVQEGWAFPSRGEGVPFFQKIKNCRQTISIWKKSNKTNTEKLILELHSQLDLAYEDENFSTEDLLALKWKLCQAYRDEEIFWKLKSREIWLQLGDMNTKFFHASTSKERARNKILGLLNQDGLWVDNEVGVEHLAENYFETLFTTSDPQVFDSALQEVPVLITEEMNKSLTKVISPEEVKRALFSLNPDKAPGPDGMTAFFYQHYWDLTGPDLIKLVQNFHSTGFFDERLNETNICLIPKTERPRKMAEFRPISLCNVSYKVISKVLSSRLKRLLPELISETQSAFVAERLITDNILIAQENFHALRTNPACKKKYMAIKTDMSKAYDRVEWSFLRALMLKMGFAQKWVDWIIFCISSVSYKILLNGSPKGFIKPSRGIRQGDPISPFLFILCTEALVAKLKDAEWHGRIQGLQISRASPSTSHLLFADDSLFFCKADPLQGKEIIDILRLYGEASGQQLNPDKSSVMFGHEVDNSIRNTIKVSLGIHKDGGMGSYLGLPKQIHGSKTQVFSFVRDRLQKRINGWTSKFLSKGGKEILIKSVAQALPTYVMSCFLLPKAIRSKLSSVVANFWWKTREESNGIHWIAWDKLCTPFSDGGLGFRTLEEFNLVLLAKQLWRLIRFPNSLLSRVLRGRYFRYSDPIQIGKANRPSFGWRSIMAAKPLLLSGLRRTIGSGMLTRVWEDPWIPSFPPRPAKSILNIRDTHLYVNDLIDPVTKQWKLGRLQELVDPSDIPLILGIRPSRTYKSDDFSWSFTKSGNYTVKSGYWAARDLSRPTCDLPFQGPSVSALQAQVWKIKTTRKFKHFEWQCLSGCLATNQRLFSRHIGTEKVCPRCGAEEESINHLLFLCPPSRQIWALSPIPSSEYIFPRNSLFYNFDFLLSRGKEFDIAEDIMEIFPWILWYIWKSRNRFIFENVIESPQVILDFAIQEANVWKQANSKEVATEYPPPQVVPANLPPTRNVCQFDASWHLKDTLSGHGWVLVDQDIVLLLGLKSARKSLSPLHAEVDSLLWAMECMISLGVSDCSFASDSADFISLLENPSEWPTFVAELATFSSLVCFFPSFSIKFFSRIYNVRADCLSKKARARNSLFSYVSKSVPDWLS
>ATLINE1_5_gag#LINE/L1 407-2539  via tfasty with ATLINE1_4_gag, 3 stopcodons.  [Arabidopsis]
MSKRMRPSWYRDSPPKQLPYAFVPEEDDDVVILPQVDNSALLGRLQLSLVGRMFHQGGRSTEALLSFLPNIWDVEGRVRGVSLGDSRFQFFFESETDLQKVLNKRPCHFSKWSFALERWKSHIGISFPDTMTFWIKTEGIPTEFWEEEVLRNFGASIGAVRRVDSSKGRLQISVKADVPFRFNKNAQLPNGEVVKVKLFYEKLFXWCTYCRRICHELDQCPLLDENQRVALMAEDQRHSHLDGSVDGRSXSLSLSQGGTVVPRNGPGERVVSLPEGPQIXKSNPSYGPNRLAANNPPLSKSSSRFGGSRSRRHPHPPSSRRLPTDRAPPPNRASGSVRRSSPPEGRKRRYGVSFSQEKIVEKPSKGNQDLARVVPSSSLPPSTIPGELRSSPHLSDSQITISDPLLAPSRAKQRTSSPAYVRERPFRLNLSKKHSASEKGKGKVGDPPMSLGDTTPGSSPSAKKSLNFDLDPSSKITTTPSSVNHVVQVPSPPGKRLSWYEMKVEEDEANARALGAGPDTILAAKFSQVVSFASPVVDVPALPDRQSHSPPLSGGSPQAEWDKNLNPLSEALNLDWTAEDEAAYHALEPPFTTGEEDVAGKNTLRIESHVSSLERLETQSSISLASTQRPTPSKVLEGATENGGDVENRDQLLSLDGLLSLEIDFVSTLGGPKKGVKKKRAETHSRKGNTTSGKVQSSLGLLVNLASKKIQ
>ATLINE1_5_pol#LINE/L1 2541-6749  1 stopcodon [Arabidopsis]
MSKDVLRVSVSCSKVGLPSQELLNVRLRLLVQASSRHPKSNLRGLLVARWGPWNPPTLTHEDLSVEDMCRMYSPGFLFLSETKNDLLYLQNMQVSLGFDCLQTVDPIGNSGGLALLYSNEFPVTVVFLNDQLIDIETIIDGNRVCITFVYGDPNVQYRELVWERLTRIGIIRSDPWFMIGDFNEITGNHEKKGGKSWSESSFLPFRCMIENCGMIEIPSHDNLFSWVGRRSCGVTGRRVRKVIKARLDRAMANEEWHNIFSHSNVEYVKLWGSDHRPLLGSIQNSPQRNFKQFSFDKRWFGKSGFKESVYEGWNLSSHDGDFFSQKVKSCRKSISTWKKASSTNSEKKIVDLQDQIDRAQEDEAISAEDLLALKWKLCDAYREEEIFWRQKSRELWYKSGDNNTNFFHAITKQRRAKNKIIGLLNQDGLWIDNEVGIENLEVDYFKDLVTTSNPQDFHSAIRDVPVIISEEINKNLTKDISPAEVKRALFSLNPDKAPGPDGMTSFFYQKFWDLTGPDLVIIVQNFLSSGAFDKQLNETNICLIPKVDRPRKMVEFRPISLCNVSYKVISKVLSFRLKKLLPDLISETQSAFVAGRLITDNILIAQENFHALRNNPACRKKFMAIKTDMSKAYDRVEWCFLQALMLKMGFSQKWVDLITFCISSVTYKVLVNGSPRGFIKPSRGIRQGDPISPFLFILCTEALVASLKDAEWHGRIQGLQISRASPSTSHLLFADDSLFFCRADPVQGQEIIKILRTYGEASGQQLNSAKSSILFGHDVENTIRNNIKVAIGIHKDGGMGSYLGLPEKIHGSKVQVFSFVRDRLQKRLNTWTAKFLSKGDKEVLIKSVAQALPTYVMSCFLLPKAIRSKLSNAIANVWWKTNENSNGIHWIAWDTLCKPHSEGGIGFRTLEEFNLALLAKQLWRLIRFPNSLLSRILRGRYFRFSDPLHIGASFRPSYGWRSIMAAKPLLLLGLRRTIGSGMLTRVWEDPWIPSIPARPAKSILDTRDPHLYVNDLIDQNTQSWKIDRLTSLIDPVDIPLILGIXPSRTYLSDGYSWPYTKSGNYSVKSGYWAARDLSRPICDPPSQGPGVTALQAQVWKLKTTRKLKHFAWQCISGCLSTCQRLAYRHMGTDKSCPRCGASEESINHLLFHCPPSRQIWALSPIPSSGSLFPRNSLFYNFDFFLWRGREFDIEEDVIALFPWIIWYIWKSRNRFIFENVREPPPETLALALQEAAAWKQAMLIDEDHVDAPPPPSFAEAPPAELVECQFDASWHAEDSLSGFGWVFVRHDVVLHLGLKSERRSLSPLHAEFDSLLWAMESLISIGMTTGAFASDCANLISILDNQDEWPSFAAEIVSYRSLVCLFSSFSIRFVPRSFNFRADCLAKKARVRNCIFSHAVGS
>ATLINE1_6_gag#LINE/L1 556-1419  incomplete [Arabidopsis]
PDLDTSELIKENSLTLMGRLTNPSVQRLWSMFPFLSNRCNLRGKALGSDLGKGCFQFKFDYEEDLLKVLDNRPYHYDQWMVILQRWEPIISESFPCKIPFWIELQGLPKHFWQPEMLKTIGEELGEILDMEITSSAAKLRVLVDGLQPLTKETIVDFRDGSETTVFLVYKNLKNHCHHCFRLSHETKLCPGLTESRGKDSVSVQPAVSQDSRGGSRNYYTPKDNFTAPRLSHHDCERTHYSQEVSNRQRNSHPSSPVLSNHFSADRGRTQRERRGPLVEVTLWQFLR
>ATLINE1_6_pol#LINE/L1 1537-5480  via tfasty with 4538901_Ath, 3 frameshifts and 3 stopcodons.  [Arabidopsis]
MTVQRIKEIRKKIFPDLLFLMETKNSSETVLQSLQWLDYPSHHLVPPESPAAGGLGLFWKSSVEVEIIHSSLHYIDTKIKAKGRTFYSTFLYGEPDRTKRLQIWNALQELSSSREGPWFITGDFNDIVNSAEKSGGPDRPEGSFTDLRSFMSSCDLYDLKHTGNFLSWRGRRHSHLVRCRLDRAMANSDWIIAYPSGRSEYLRFEGSDHRPLVTSFDHVQKKTKNIFRYDRTLKDNPEISKLMNETWKSNPSAKVDYRLHLCRAALLNWSKEHHLNSQKEILSLRVQLEEALTDDAATQDSVDLLNQNLLLAYRKEETFWKQRSRNLWLALGDKNSCFFHAATNSRRAINTISVIENSAGTSVYEDSEIIETISDYFQDIFTSQEGDRTSVVAEALSPCITTDMNNTLISLPTVAEIKQACLSIHPDKAPGRDGFSASFFQSNWSTVSEEITAEVQAFFISEILPQKINHTHVRLIPKIPAPQKVSDYRPIALCSVYYKIIAKLLAKRLQPILHSCISENQSAFVPQRAISDNVLITHEALHYLKNSGALVNCYMAVKTDMSKAYDRLEWDFVKAALEEMGFHHHFVGWIMXCISTISYSFLLNGQAKGLVVPERGIRQGDPLSPYIFIICSEVLSRMCLKAQENGSLPGIRVAMGCPRVNHLLFADDTMFFCRVDPKSCLKLKSILHKYELASGQKINQAKYSITFSAKTPPAVRERVKQILLIQKEGGQGKYLGLPELFGRKKKDLFTAIVDRIKQRALSWSSRFLSSAGKLTMLKSVLSTMPTYTMSCFQLPLSLCKRIQSTLTRFWWDSKPDQRKMSWISWQKMTLSFKSGGLGFRDVQTFNKALLAKLSWRLLQNPSCLLAKLLLGKYCKHSTLLDCKVSNSASHGWRSICLGRDVLSLQLGRLIGNGLTTPIWRAPWLSLTKSXAPMGPPTEASHLLVVSDLLIAGTTNWNKELIRQLLPVYEKDILLLKPSLLGAADRWAWLPTSSGLYAANSGYFEALKETASLENPPNHDLVKNFNWRSNIWGLQTSPKTKHLPVGSNLLLRHISDTAKCPRCEQAESTLHLFFHCSFARRIWDLAPFSIRPNFDGIRSFKEGLVLANTLICLPPTGIGSGPLFPWLLWTIWTARLIFNKRQVLEEEAIHMAILRAKEWQEAQTPQDLHRRSPPEPSASPPCYRXSDCYTDVAWLPDCRAGFGWIFKSAQDFQLFAGNSSASDVGSPLIAETLVTLADVRVACESDIKAISFASDSQIIVKALNQKLQVKELHGILHDILSLSSSFDACTFTFINREFNHQADALAKRALVCCMEP
>ATLINE1_7_gag#LINE/L1 523-1413 [Arabidopsis thaliana]
MLVLQRWTPLENPPLIDFIPFWIQVRGIPFHFLNRDVLTHIGRSIGNLLDVDYDAEAAARVEFVCIQIHWDIQQPLRFQRYFQFQVGVNTLLRFRYERLRGFCEICGMLTHDSGACIIPNGGADHIPEGNDDDDAAIPPPDRAPIADINAIPRDIDGNAEDEARADMDDGEAEADALDDIDPNHDALGSHKEMEGRAGVYNWWNAEGETSSVTHPTYADLINRMGPLPTPNLDDTAGVRSSDRGKRKREDSPDETVKIENVTMVIREIGESSGCSGEASHPGLERGAVGLEPPLPP
>ATLINE1_7_pol#LINE/L1 1881-5528 [Arabidopsis thaliana]
MDFRRMLQICDFEDLKHFGDPFSWIGKRYTHDVACCLDRTLVNNEWLAEHPASHSEFLEFIESDHRPVITTISNDFTPRQGQFYFDSRMIGQDGFNDAVKMGWKLRMRGHHEGIGSRLKNCRTEISKWKRRYRRSGCDEIVLLKHRLDKAHSVGSSTQQLRDLRLQLTRAYENEEEFWRIKSRKTWLSSGERNTQYFFASAKTRAAKNRLISLIDDHGTEHRGDTHIGVVAEQFFTKLFESDLNPQNNHYHVLHEFQTRVTPEMNANLIKPVSEEEIKQAVFSIGSTKAPGPDGFTGAFFQQYWEDIKTELIEEVQNFFEHGSFDKSLNHTNICLIPKTSEAKHLSEYRPIALCNVSYKVISRVLVERLQRHLSSIISEEQAAFIPGRVITDNVLIAHEVIHALKVKKRCANSFLAIKTDITKAYDRLEWDFLQATMFRFGFDVKWIKWIMTCVRTTTYSVNINGAPHGFIEPKRGIRQGDPLSPYLFILCAEVLSHMMKRAERNGAIKGIKISNGGPAISHLLFADDSLFFCQANKKSVQEIKSILYQYEQASGQKVNTRKSAITFGKRVSEATKTQIRRCLQILNDGGCSKYLGMPEQFGRKKVELFQYIVEKVRERTNGWSNKFLSQGGKEVLLKSIAIAMPVYCMNCFKLPRSICDEIERLMANYWWQTNRNDSPTHWVAWDRLKHLKKEGGLGFRDIEKFNESMLAKQAWRILQNPSCLLARVLKGRYFSSSNILTATRGSRPSFGWQSILLGRDLLKRGLRFTIGNDTTIQPWVDPWLPIHPPRPPRLTSPTSITRVNELFLHHQAAWNETLIRAVVHPDDVSHILRIKISSHQDKDYLGWHYSDTGIYSVRSGYWLAMHLPDQEVLPLPPHGDPQLKQSIWKTKTAPKIKHFLWKLLSRGLPTGEELERRHMITNGPCRRCVTELETTHHLFFTCPHATMMWRASHVPIRSIFDPVVSLEAKIRAILDFNNQKDTSNHLTHLPLWILWKLWRSRNILTFQQRSSNWQKDLREAKQDATEWSSLLLPSSHNRHTTHTGHQTRVVTSKTWKRPRAGLVKCNYDGGFLNSEQSVTTGWVLRDDDGDYKGSAQSTGFMVTSAVEAECQSLITAMQHLWTKGYRRIIFEGDSKILVSVLQSNSMRFDLFNWLKEIKHWQARFEEVEYAWVPRTANAPADKLARHQRLSQTLFTFHNLIPSCLSRALYSDSINQ
>ATLINE1_8_pol#LINE/L1 1445-5553 (2 stopcodons, 1 frameshift, estwise with 2583130_Ath) [Arabidopsis thaliana]
IRTAAWNCRGLGNDLAVRRLKEIKKKFSPNIIVLMETKQRNDIVKDVCSEVGYDRVVTVPPDGLSGGIALMWKSNVSVSVLYQSPNLVDTYVNINGFGFYLPCVYGHPNQTYRHLVWERLERTATQRTGPWMAIGDFNEIRGNDEKRGGNPRPESSFIDFRKMLQVCDFQDLKHLSDPFSWVGKRHSHDVACCLDRSLVNTEWLTQFPASHMEFLDLIESDHCPIITTITSDFEQQHNQFCFDGRVVDRDGFSDAIRRSWNKRFDNHDDTLRARLTECRRAISQWKRRYRSNAKEDIALLKKRIDRAHTDGSSIQRIWALRLQLSKAYADEEEFWRLKSRKTWLASGDRNTKYFFASTKIRKSRNRMHSIFDDDGVEHRGDSNIGKVAQHFFSNLFHNDLTTNNNHYHVLNGFTQRVTSDMNDDLTKRITXEEIAEAVFSIGGSKAPGPDGFTGDFYHKYWADIKQTVMKEVHNFFENGVFDKSMNHTNLCLIPKPEHPRHRSDYKPIALCNVSYKIISKILVGRLKKHLSSIISEEQAAFIPGRVITDNVIISHEITHALKVKKRCSTSYTAIKTDITKAYDRLEWDFLQATMFKFGFDVRWIEWIMTCVRTATFSVNINGAPYGFIQPERGICQGDPLSPYLFILCAEVLSHMMKKAEQQGHIKGIKISNKSPPISHLLFADDSLFFCQANMKSCLAIKDILTQYERASGQKVNTNKSALHFGKRVQDTMKTSIRRTLQIHNDGGCNKYLGLPEQFGRKKIELFQYIVEKVREKTKGWRNRFLFHGGKEVLLKAIALAMPVYSMNCYKLPKNICEEIERTIAQYWWSTQPEGNAMHXVAWDRMKFSKDEGGLGFRDIGKFNDALLAKQAWRILQHPECLMARVLQGRYFPNSNVLVATNGSQASFGWQSILKGRNLLKXGMRYIMGNGDLIQTWADPWLPLHTPRPPRRLDQNQQRVLHIQDFFLPNKTGWNEQLLREHVVPEDVPHILTLKLSQTQMTDYLGWHYTESGIYSLKSGYWLASHLPEGEPTTRPQAGNPQLKQRILKTTTAPKIKHFLWRMLSRALGTGEELERRHIHQDKFCNRCITETETTDHLFFTCPHATQIWRASSIPIHDLMDPHISLETKMITLFEWHKLGTNNSLQAHLPFWILWRIWKSRNKLTFMRRNNQWQKDLQSANQDAEEWSTYGGNYRDSCKNPVLVSDNRTPHHWKRPEADWIQCNYDGSFTQQXRNXTGAWIIRNEHGHYKGAGKAISTQTTNSLEAECHSLLSAMQHLWSQGYTRVIFEGDCKILVDVLRGKTLRFDIANWLQDILSWKRRFKEVKFSWIPRQGNQPADKLVKSHRFNDQDFSFYYYVPICISNLLHSDYV
>ATLINE1_9_pol#LINE/L1 170-4051 (2 frameshifts, estwise with 2583130_Ath) [Arabidopsis thaliana]
MRTAAWNCRGLGNDLAVRRLKEIKKKFSPDIIVLMETKXRNDIVRDICSDVGYDRVVMVPPNGLSGGIALMWKSSISVXVLYQSPNLVDTFVNINGFGFYLSCVYGHPNPIHRHLVWERLERTATQRTGPWMAIGNFNEIRGNHEKKGGNLRPESSFFDFRKMIQTCDFHDLKFTGDPFSWVGKRHTHDVACCLDRSLVNNEWLTQFPASHMEFLELIESDHRPVITTITSDFEQKHNQFCFDGRMVERDGFSDAVRRGWNRRIFHQDDNLRSRLTACRREISQWKRRYRSNAQEDIALLKNRIDRAHSDGTTTQHIRELRLQLSKAYAAEEEFXRLKSRKTWLSGGDRNTKYFFASAKTRSARNRMYSILDDANVEHRGSSNIGEVAQQFFTKLFRSDLTTNNNHYYVLNGFQQRVTADMNADLTKKITEEEVKEAVFSIGGTKAPGSDGFTGAFYHHYWDDIKQSIMAEVHDFFENGIFDKSMNHTNLCLIPKPASSRLLSDYRPIALCNVSYTIISKILVARLKKHLSSIISEEQAAFIPGRVITDNVIIAHEVIHALKVKKRCSNSYMAIKTDITKAYDRLEWDFLQAAMFKFGFDVRWIEWIMTCVRTPTFSVNINGAPYGFIQPERGIRQGDPLSPYLFILCAEVLSHMMKKAETQGLIKGIKISNKSPQVSHLLFADDSLFFCQANMKSCLAIKDILTQYERASGQKVNTSKSALHFGKRVQDTTKTAIRRTLDIHNDGGCNKYLGLPEQFGRKKIELFQYIVEKVREKTKGWRNKFLSHGGKEVLLKAIALAMPVYSMNCYKLPKHICEEIERIISQYWWCTQPEGNAMHWVAWERMKFSKEERGLGFRDIGKFNDALLAKQAWRILHNPECLMARVLRGRYFPNSNVLVASIGSQSSFGWQSLLKGRDLLKKGMRYIVGDGTSIQPWVDPWLPLHPPRPPRQLDHTQPQFQTLQDFFLPHKTGWNERLLQERVAPEDIPHTLALKISQSQSKDYLGWHYTDTRLYTVKSGYWLATHLHSDEPRALPPTGDPHLKRSIWKTTTTPKIKHFLWRMLSKALATGEELERRHINPDKYCKRCVTETETTDHLFFTCPHAMQIWRASTIPIQDLTDSRVSLETKMSIIFEWHKQSSNNQLQAQLPFWILWQIWKNRNKLIFGREANTWEKDLSSAHHDAEEWSTLGDTRRLRNXHSPTANGSRRILHWRRPEAGWIKCNYDGSYIQHLQRTSAAWIIRNEFGHYKGAGKIQGTQATSALEVECNSLVSAMQHLWAKGHTKVIFEGDCKIL
>ATLINE1_10A_gag#LINE/L1 46-1524 [Arabidopsis thaliana]
MALSLSEGDFLPNSHRFNSPRRSSSPTIIICLFSRFYDGGYFLPISFHGSYHCPSLSEGNYPHKPPWIQTYIYFNSLLLLPFLQFTISQTLSSTIMSDRLRKSVQDLNLGIDDEPVALTSEFCSQAAYVNRFSLVVTTVNPRKQNLRALIGQMPRVWGFPDSCVGRIIDKGRVQFKFQSEEAMNLVLRRGPWSFNDWMLSIHRWYPNLSEAEMKIIPFWVQITGIPLLFLTNAMARCVGNRLGHVADVDFDENSNHTGFVRVRINWNLDDPLRFQRNFQFADGENTVIKFRFERLRNFCTKCGSLKHDIKVCTLSFDNEDPVETSDDDDADDDDDHHDDNKEHDISDTDTLQTVDPATLIPGLQSSLSKGNQRQVQKLSDGYSVPCVIEDTDLTVERLRYLHAKLAGVKTDAPVEKDLLLESSDNAQNEFVFMKRKRVRLEEMYQQVEAADEMGVLSQLCKKGRKTESAGSCSIHDGRDGGAGGPVPLRDPI
>ATLINE1_10_gag#LINE/L1 30-1499 [Arabidopsis thaliana]
MSLSKGDSLGDFRRSSFLHRRSFPTRIDHGFDVKIFTGGFNLSKINDSYSLPSFSGSNHQLKPPWPLLYNHRVHPIMFSLSLFYQFEFKLLSIMSDFLRKSVQDLDLGVDDVPIVLSPEFVSQAASVNRFSLIVTTVNPRKQNLRALIGQMPRVWGLVDSCVGRIVGNGRVQFKFRNEESMNLVLQRGPWSFNDWMLSVHRWFPNITEGEMKIIPFWVQIQGIPILYLTNAMARVVGSRLGYVTDVDFDENANQMGFVRVKLAWNFDDHLRFQRNFQFQENENTIIKFRFERLRNFCTKCGSLKHDVKECNLSFEEYVPVNVNDDNDDDNHDQGHDEDDMAAEDSLPSIDPASLIPGLQGHNAGATSVKQEGSSSSVPSDLASAFEDTELTAERLRYLHAKHVRETLMDHQREAGLLEEVSDNATIGFPFVKRKRVSFEMLYNQAEAEEESAVLGHIRKRDKKVSLGASVSSPLSMDGGAGSPVPPQPP
>ATLINE1_10_pol#LINE/L1 1496-5596 3 stopcodons [Arabidopsis thaliana]
MRIGSWNCQGIGVPLTQSQLSNLCKVFKFDVLFLIETLNKCEVISNLASVLGFPNVITQPPQGHSGGLALLWKDSVRLSNLYQDDRHIDVHISINNINFYLSRVYGHPCQSERHSLWTHFENLSKTRNDPWILIGDFNEILSNNEKIGGPQRDEWTFRGFRNMVSTCDLKDIRSIGDRFSWVGERHSHTVKCCLDRAFINSEGAFLFPFAELEFLEFTGSDHKPLFLSLEKTETRKMRPFRFDKRLLEVPHFKTYVKAGWNKAINGQRKHLPDQVRTCRQAMAKLKHKSNLNSRIRINQLQAALDKAMSSVNRTERRTISHIQRELTVAYRDEERYWQQKSRNQWMKEGDRNTEFFHACTKTRFSVNRLVTIKDEEGMIYRGDKEIGVHAQEFFTKVYESNGRPVSIIDFAGFKPIVTEQINDDLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAKKREIPWIAWKRLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPNSLFARIMKARYFREDSILDAKRQRYQSYGWTSMLAGLDVIKKGSRFIVGDGKTVxISQDNFIASHPPRPLNVVTPTLDITVDTLISTQGSYRYWNAHLISQLVSPDDHRFVMNHHLSRIVHQDKLVWNYSSSGDYTVKSGYWFLFNDPTNIxVRPVVPHGSVEIKNKLWKLPIIPKIKYMLWRTISKALPTRSRLLTRGMDIDPHCPRCPTEEETINHVLFTCPYAASIWGLSNFPWLPGHTFSQDTEENISFLINSFSNNTLNTEQRLAPFWLIWRLWKARNNLVFNKFSESCSRVVTQTEAEVNEWLQSVNRREDASVLTRSSHRANVRWKKPVFPLVKCNFDAGFTGNNTQSTGGWIIRDHAGLAKAWGSSIVxNGTTALEAETKALLIAMQQAWVRGYKCVQFEGDCEILIKAINGAISRCEITSLLRDVDFWASRFSTVVFTFTNRLCNNTAHLLASPLYSCYKFQSNSGYQPLWLKNSLCKD
>ATLINE1_11_gag#LINE/L1 579-1750 (1 frameshift) [Arabidopsis thaliana]
AGVISSKELLNGFKSKARLFTLPSGEACVKIPDSIIEKHKKSWESFILGQFYSDPPAQGTIHTIVNGIWSKQFRVSLXSRMEGNAFLFCIPNVQTRTRVLSQRLWQIDGQTMFVAKWEPGLTPVKPELTTAPIWLELRHVPFQFFNDNGLEHIASLVGEPKFLHPSTANKTNLEVARVFTIIDPRKPLPEAVNVHFASGDIRRIEVSSPWMPPVCAHCKEVGHSLRKCKVAPITCKACNSTLHLADACPRDQPQGVKKRHRRRRSKTPKPVVEEGDWNTVAPRNRRSTRSSVVLTIGPPLSVPDANAAAMAGSSKEAQRPNPITGKAASFKGKGKSIVVAKSTTVSEADYDSSDVPSDDVDSDLENEEQFTEVLSKRQQRSARGKGPKSH
>ATLINE1_11_pol#LINE/L1 1756-5397 (replaces 3319372_Ath, which was a subsequence) [Arabidopsis thaliana]
MSIDIFCWNVRGFNSSSHRSGFKKWYRSRKPLLGSLLETHVRLPKQQKFLNALMHGWLFDNNYDFSVLGKIWLLWHPSVKVSILFKSLQMICCEVQMPNCSDTMVLSFVYASTDEVTRQILWNEIVDFSNDPCVIDKPWTVLGDFNQILHPSEHSTSDGFNVDRPTRIFRETILLASLTDLSFRGNTFTWWNKRSRAPVAKKLDRILVNDKWTTTFPSSLGLFGEPDFSDHSSCELSLMSASPRSKKPFRFNNFLLKDENFLSLICLKWFSTSVTGSAMYRVSVKLKALKKVIRDFSRDNYSDIEKRTKEAHDALLLAQSVLLASPCPSNAAIEAETQRKWRILAEAEASFFYQRSRVNWLREGDMNSSYFHKMASARQSLNHIHFLSDPVGDRIEGQQNLENHCVEYFQSNLGSEQGLPLFEQADISNLLSYRCSPAQQVSLDTPFSSEQIKNAFFSLPRNKASGPDGFSPEFFCACWPIIGGEVTEAIHEFFTSGKLLKQWNATNLVLIPKITNASSMSDFRPISCLNTVYKVISKLLTDRLKDFLPAAISHSQSAFMPGRLFLENVLLATELVHGYNKKNIAPSSMLKVDLRKAFDSVRWDFIVSALRALNVPEKFTCWILECLSTASFSVILNGHSAGHFWSSKGLRQGDPMSPYLFVLAMEVFSGLLQSRYTSGYIAYHPKTSQLEISHLMFADDVMIFFDGKSSSLHGIVESLEDFAGWSGLLMNTNKTQLYHAGLSQSESDSMASYGFKLGSLPVRYLGLPLMSRKLTIAEYAPLIEKITARFNSWVVRLLSFAGRVQLLASVISGIVNFWISSFILPLGCIKKIESLCSRFLWSSRIDKKGIAKVAWSQVCLPKAEGGIGLRRFAVSNRTLYLRMIWLLFSNSGSLWVAWHKQHSLGKSTSFWNQPEKPHDSWNWKCLLRLRVVAERFIRCNVGNGRDASFWFDNWTPFGPLIKFLGNEGPRDLRVHLNAKISDVCTSEGWSIADPRSDQALSLHTHLTNISMPSDAQDLDSYDWVVDNKVCQGFSAAATWSALRPSSAPVPWARAVWFKGATPKHAFHLWTAHLDRLPTKVRLASWGMQIDTTCGLCSLHPETRDHLFLSCDFANFLWFTVSSRLGVPPINLASWQHLVDWLCGGSIRSPTTLRKLVAHSVIYAIWKQRNNLHHNHVYVLPSVIFKEIDKEIKNSITARRHKKRFRPLMQLWLL
>ATLINE2_gag#LINE/L1 94-1512  via tfasty with ATLINEIII_139-1623, 2 frameshifts and 2 stopcodons.  [Arabidopsis]
MSKEVGATPGLVPTHSPEVQGPKSYANVVSSRPSLTKFNVDVSVVDGKSMVVVPDVVLEDSVPLWDDFLVGRFPSSAPHIAKIHVIVNKIWNLGDKSIRIDVFAVNDNTVKFRIRNASARLRALRRGMWNICDLPMIVSKWTPIVEDAQPEIKSMPMWVVIKNVPYSMFTWPGLGFLASPVGEPQRLHQETKXVTSFEEAKIFVDVDLSKPLPKTYFFNIKGEEFCVEFEYPWLPPRCGVCGKWGHPENGCLASLGTTKVFTGPPVLLRTGNCXINIGPSVSLPVAVAVGNDLVESVPLVDSQALEVVKGDIAEEVEEGEIASNSNQKSVQGEKIQEEGDWLTVSIQGGKSTYQKSGRTLTYGQVCIASPSRYAILSNIEDDSVLEEVQNEDSVGKETEDSVKGVLEVVVVEGKEEMALNKTQQVKSCFDGASTRVSIPRSSKKAHKFVSVPNQKATDVLPRQVSKKNNKRFP
>ATLINE2_pol#LINE/L1 1515-5194  via tfasty with 9758853_Ath, 1 frameshift and 3 stopcodons.  [Arabidopsis]
MSGFFWNIRGFNKHNKQKVVREWIKKTSLQFGCVLETRVIESKVPVIFAKVFKDWQMVSNYEFNRLGRIWVVWSSSVQLQVIFKSSQMIVCLVRVEHYDVEFICSFIYASNFVEERKKLWQDLHNLQNSVAFRNKPWLLFGDFNETLKMEEHSSYAVSPMVTPGMRDFQIVVRYCSLEDMRTHGPLFTWGNKRNEGLICKKLDRVLLNPEYNSAYPHSYCIMDSGGCSDHLRGRFHLRSAIQKPKGPFKFTNVIAAHPEFMPKVEDFWKNTTELFPSTSTLFRFSKKLKELKPILKDLSRNNLSDLTRRATYAYEELCRCQTKSLTTLNPHDIVDESLAFERWEKVAXLEEEFLRQRSKLHWLQVGDNNTKAFYNVLKERHLLNAIHEVMDPQGTRPPNQDDIKIEAVRFFSDLLSSQPSDFTGISVDELKGILQYRYSLHEQNLLVAEITEAEVMKVFFSIPLNKSPGPDGYTVEFFRETWSVIGQEVTMAIKSFFTYGFLPKGLNSTILALIPKRTYAKEMKDYRPISCCNVLYKAISKLLANRLKCLLPEFIAPNQSAFISDRLLMENLLLASELVKDYHKDGLSPRCAMKIDLSKAFDSVQWPFLLNTLAALDIPEKFIHWINLCISTASFSVQVNGELAGYFQSKXGLRQGCSLSPYLFVICMNVLSAMLDKGAVEKRFGYHPRCRNMGLTHLCFADDIMVFSAGSAHSLEGVLAIFKDFAAFSGLNISLEKSTLFMASISSETCASILARFPFDSGSLPVRYLGLPLMTKRMTLADCLPLLEKIRSRISSWKNRFLSYAGRLQLLNSVISSLTKFWISAFRLPRACIREIEQISAAFLWSGTDLNPHKAKVAWHDVCKPKSEGGLGLRSLVDANKICCFKLIWRLVSAKHSLWVNWIQNNLIRTGXFWSVKANTTLGSWMWKKLLKYRHEAKEFFKMEVFCGRQTSFWYDHWCSLGQLHGLLGDRGFIDLGISSSCSVAEALSSHRRRSHRDDILNDIEEELEKLLCRGICTEQDRSLCRSIGGQFKAKFFSPEIWHQIREQGLVKQWHKAIWFSGATPKFTFISWLAAHDRLTTGDKMASWNRGISSVCVLCNISAESRDHLFFSCNFSSHIWDRLTRRLLLCRYTTNFPALLLLLSGQDFSGTKRFLLRYVFQATIHTLWRERNKRRHGDLPIPSDHIIKFIDRQTRNRLSTITKQGLHKYADGLRIWFAARDNLTPNH
>ATLINEIII_gag#LINE/L1 160-1623  [Arabidopsis]
MLPAAAPPGLSGEVPLREGSPVSSPVSLERQDGDLIVSNQSTYRVLLVSDSDQFPALSQSALETTQRMSHPPAKKSWVNAARKHTFTQQKFVSEEVDGQATVVVPKEVFLGAKPLWEDFLIGHFLNAKAPHVGKIHMIVNKIWRLGDKSNLIDVYAVNDSTIKFRIRNEAMRRRALNRGMWNIMDLPMVVSKWSPFAEETQPAMKSIQLWITLTDVPPSLFTDKGLEFLASAVGKPIRLHPKTESCSSFDEAQLLVEADLTKELPKEFVFTGEEEGELAAVIKYSYPWLPPRCSCCDKWGHLRDSCLSALKTCSRDTPNPDPIHVEETETGQVLSNSQTAASVTAECVTENIPIIPISEDGKEEEKGAESWITPKFGRSPPKKQEGLQFGEVSILSNSYSALNGKDESGEDIITADSVEKQAEETQNSTQDPPQEKVENQNRLAKKEMILRHSLPRGSKSAHKVLSNPSTRNNPKDQSKGLPPKHH
>ATLINEIII_pol#LINE/L1 1623-5294  [Arabidopsis]
MSGFFWNVRGLNKSNKHSVIQKWVDEQNFQFGCLIETRVKEENSQWLGSKLFKDWSMLTNYEFNRRGRLWVVWRENVRFTPFYKSDQLITCSVKLESQEEEFFYSFVYASNFAEERKILWNDLRDHMDSPIIRDKPWIIFGDFNEILDMDEHSRMEDHPAVTSGMRDFQSLVNYCSFSDLASHGPLFTWCNKRDNDPIWKKLDRVMVNEAWKMVYPQSYNVFEAGGCSDHLRCRINLNMNSGAQVRGNKPFKFVNAVADMEEFKPLVENFWRETEPIHMSTSSLFRFTKKLKALKPKLRGLAKEKMGNLVKRTREAYLSLCQAQQSNSQNPSQRAMEIESEAYVRWDRIASIEEKYLKQVSKLHWLKVGDKNNKTFHRAATARAAQNSIREIQKEDGSTATTKDDIKNETERFFQEFLQLIPNDYEGITVEKLTSLLPYHCSPAEKDMLTASVSAKEIRGALFSMPNDKSPGPDGYTSEFYKRAWDIIGAEFVLAVKSFFEKGFLPKGVNTTILALIPKKLEAKEMKDYRPISCCNVIYKVISKIIANRLKHVLPNFIAGNQSAFVKDRLLIENLLLATELVKDYHKDTISGRCAIKIDISKAFDSVQWSFLKNVLSALDFPPEFVHWVMLCVTTASFSVQVNGELAGYFQSSRGLRQGCSLSPYLFVISMDVLSKMLDQATEAKQIGYHPRCKSIGLSHLSFADDLMILSDGKVRSIEGIVKVFDVFAKSSGLKISMEKTTIYLAGTSEVSHQWIKDRFSFDVGTLPVRYLGLPLVTKCLTAADYLPLIEQLKKKIGSWTARFLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIREIDKLCSTFLWSGPDLNSHKAKVAWDDVCKPKKEGGLGLRSIKEANDVSCLKLIWRILSRGDSLWVKWVETYLLNTESFWSIKESTSKGSWMWRKLIKFKDMAKQFCKKEVNTGRNTFFWYDDWSTLGRLVEIAGDRGTIDMGISRKMTLEEAWNGRRQRRHRDNVLNQMEEALELTRQRRNGNDDVTLWKGKNDDYRHCFSTKETWNNTRTMGIEVPWHKGVWFTHSTPKFSFCVWLAVYDRLSTGDKMLLWNRGLQGTCLLCRNATESRDHLFFSCSFSSEVWEMSAKSIYKSSYSTDWRHLLTKIQENWKDRVESFIARYIFQVSVYAIWRERNRRKHGRNPNQAAQLVRWIDKQIRDQLSAIKLMGDRRYDQGFQFWLNSSS
>BNR1#LINE/L1 2327-5999 via tfasty with LINE1J_MT_pol, 3 frameshifts and 1 stopcodon. [Beta vulgaris]
MILLSWNCRGLGARIKRNAVRKLIQKNDPHLIFIQESKLESISPKVMKSICDVNDMNSAISPSNGPSGGLISIWKNSLLQVEESRCECNGSYSHGSILSINMKCRFINLYNPCDVQRRTEVWRELIQICESSPLPCLFIGDFNEVLEASERGSQHILTNSSTEFKDFLQVLHLIEIPSSNSKFTWFRGQSKSKLDRVFVQAQWISAYPLIRVSHLQRGLSDHCPILVQSKEKNWGPRPFRFLNCWLSHPGCMKTISDTLGxIPINMTFMDKLRLLKTNLEEWNAAEFGIIEEKISFFENKIHEYDLIANNRMLDKAELEERKAAQIELWQWSKRNESFWAQHSRAKWIREGDRNTRYFHVMASIRRRKNNIEYLKEGEHMIEDPTEIKMAATNFFKNLFTEEHEIRPVFEGLDFKRLGEQHEHILTDPFSTAEIDAAVAACDSSKSPGPDGFNFMFIKNSWDLIKEDIYAIVFEFWQTSHLPKGCNTALVALIPKTNPPNGFKDFRPISMIGCVYKIISKILARRLQQVMAHLVGSHQSAFIKGRQILDGALIAGEVIESCKRNKVDATIFKIDFHKAFDSVSWGFMEWTLTQMNFPKQWREWIRACVLSASASILINGSPTSPIKLRRGLRQGDPLSPFLFTLIAEPLNLLIKKAVSLSLWEGVEICRGGLKITHLQYADDTVLFCPPKLEFLENIKRVLILFHLASGLQINFHKSSLMGINIEPKLLDHMASQLLCKVGSLPFVYLGLPIGGSASRINLWEPVIAKIEKKLASWKGNLLSIGGRVTLIKSCLASLPLYYMSLLPMPKGVIEKIIQLQRNFLWRGSLEKKALPLVSWNVLELPKQYGGLSIGNLHNKNTALLFKWLWRFIHEPNSLWRQIVQAKYDIGPTFTIRDLTTPPHGGPWRGICNLIQSSSHAYQIATHMIRKNIGDGSSTMFWHDVWVGEHPLKEVCPRLFLLSLSPNALVSSCGFWDGQIWHWSLHWKRNLVRKIDASRESLQVLLDRAVLYQDGHDQTIWTPAKSGKFSVKSFTLELAKKDVPQNFDASKGFWKGLVPFRIEIFVWFVLLGRLNTKEKLWRLGIVPESEKNCVLCNIHPESVNHLFMGCTVASELWLWWLSIWGVSWVFPSTLKSLHNQWHAPFRGSIIKKSWQAIFFIILWTIWKERNGRIFENKECSMSQLKDLILLRLSWWLKGWGDFFPYSSTDTPSKPAMSPMEFQAVPK
>BvL1-2_gag#LINE/L1 807-1865 [Beta vulgaris]
MEFIIPLAYLSKVVSLFCFQVHNPYKRDTQVMFSYIPNSFSSLFRTCLLVLKFSIILLSVMMGSHSNFKDVLLSNPNPNVELAASGFPLGDPPTNLSLQNDPPHPPSFLEAVVLDSLPQVQKDIEELSKSCLFGKMLSAPLDLRTIIARTKADWKIINGEVDYLQMGNGWILLRFANPQDLSLIWSERPWHIQGDLFVLSPWKPFFDPYLEEIKWVDLWVRIPRLPTELLNFDSIANLLASNDIGALIKIDQRSLLHNKIRFARACVRVDIQGPLLEFAEVSRVGDLVHGYVIWYEDFSSGCSFCGESEHAIEVCPLLNSPKKEITHKTAKDTLNRTSLSCMQLLRLLGKLVM
>BvL1-2_pol#LINE/L1 2638-6809 via tfasty with ATLINE1_12_pol, 4 frameshifts and 2 stopcodons. [Beta vulgaris]
MSVSCWNIRGCARKNALVDTRDFCLHNNVKILMLCEVKSQSPPSQAMITQCGFLNFDVIPTIGYSGGLWIMWKQCFINPFDLTIIFKAERFISCLVSLTALQKEYVIIFVYAPAKQEFKHEFWCDLFRYALSLSLPFVIMGDFNEIACLEDKSGGAPISSSRFNIMNNIFSQLPCSEIPFSGQRFTWRKKRAGDNNIYERLDRGLASPLWISLFPSANILHAVFTSSDHCQIVLNYLPSSSAKAPPFRFEKMWCARKDYDTLVKKTWCVQFDGSHMFRLVKKCKLLKEKSKEWNKFQFGNVFRQLRQVDSKLKTLQQEILANPLNVDLLKKQDLFLKKRSSLLAFSSEYWKEKSKTMNLTLGDTNSSYYHTHATIRKNRNQIRRLVLLNGDQITNPNAIAQKLTDAFVHRFKSDDKVSFDSNLDFALLDPIISLQDNNFLTSTVLGEEIKNAVFDLAPDKxPGPDGFPPFFFQKYWTLFGNSVIRAVQAFFHSGNILKEINHTFLALIPKIDNPSTANHFRPISLCSIIYKIISKVITSRLKTVLGEIIHPLQGAFVPDRLIQDNILIAHEVFQAFRSKTGPNGWIAIKLDMEKAYDRLEWSYIFMTLEKLGFSPIWIGWIKECISSSSFSVLVNGVPGEKFFPSRGIRQGDPISPYLFILCAELLARLLSSAANSPTKSVGMPVGKTGIRVPFLTFADDTMIIAKANNYSCLVIRQILDKYFSMSGxMVNYHKSAFQCTGNVSANEKQDFANILGMTESNSLGDYLGCPIITSKVTKETFTPVLNKTINQLPKWKANSLSQAGRSVLIQSNLASKSNYYEMQSFRLPKYILENLDKTYRNFFWNKDHLNKAPNLIGWDRICKPKTAGGLGFRSAEVSNNALQMKLLWRIIKDDNNIWVRLVTKRFIKNSNPFILKFPSLPRWQWRNLLKLRDTFKKGLRWHLGDGKSIRFWSDNWVFQYPLSAIIVPTPGTETYLVDHCILDSGRWNTQILLSLVPPHIVAQIISIYIPSESQPDSLVWGLTADGEYSVKTGALLAQGILPASAEKVEYGWIWGLHIPPKIKNFLWKACNDGLPMKSRLEKSHIFLPQQCVFCNYASESIGHLCFQCPFTSDVFHHLNASFHWPIPRVCLQSLNLSCFRSALEACHSVSSKGEIVKFSFVWWFVWYFRNKLIFNNEVVSSRRATFIISSYVLTWDKALAGDHIGSFIPEGHSKVGGSQRSGPALDWSPPDPGHFKLNFDGSKLSNGSSALGFVIRNSDGEVLIAGGISLGCHTTILQEEAWGMKEGIVAALSLNISNLTIEGDNLAVVNAVRKIWKVPWEIRNIVTDIHANIARFDSFQVQHCFREANRLADFMAHRGHTFQNLHYCTPPYDFDFSLCIRKDVLAWPPH
>CIN4E_ZM_gag#LINE/L1 1-2802 [Zea mays]
DLHKHAATADGTSLLAASASAPKSTRKFYSETSSIGDPVDLLAPARIPVSEKRKWAVGSSPVFPPDCNEVDFNFNASNATSHQLAVDGGHDLRSYGRLHFDQHKADAPVLEEGGWSVVRPKFWWRKTVENLKRSSSQQQHDTKGTSTFKTKLQGKCYNCLSPDHLAFRCSAPTRCWQCLHFGHRARACPGIYYRSRHNSTSPQPEPVQHSMQYTSNVNSRHQQHQRQLNSLLKEQKQAPEPVLNFSPVQHNKSYLRAAQEGQNMEARYPGDPRARPSRAFCAVSATGSIRRRRDDLISKAVVCSFDGNSHEVDTIVAGDMLREKFNLCHGQYQLVKHFPEQFFIIFPDARTKQWAIDRRSVSYRGREFHFGDWSEESYARKTSWEFRVKVRVEGIPVHCWGEEVASRALGRSCTIHYVQERSRRRERTRSFDLWAWCSDPCEIPKEVWLTVSEPDPELPPISTPLPLVGAHHAEPTDLKKGHVYTLRNHLEVVEDLCFIHGRNTRGGPMNRKPRREFVWSYGVSDSAGEKRERSEEFRGRETMRRDWDHDDDEDFHQHRHQGTRRQRSLSGWARSSRCRGGVEDCYSSSGRYRPSTPFRRRGMGMGQPGRWIPKIKNKKVSFADPVITAIWPTDVSKGHISAENSISLGGMDLGTQAMEEYQCSAHPKVSVPIASNSVNALIHSWSTRGTDSASVPIISGSHLANETIQGDLCIQNVQVESNFSNSEPNSQRNVVANEDRQCILPSNEVPPIDHESSTHSTPRPLENQLNSNDRLQIFIESITNTPEPPLILSPPNSNTLATSPVLGGSDNLDANVTINAGTPGKRSSSRLAAKQRLNVGGSRDAISKAQEILIAKLSNSAAIQYQGSSASTSNNHVNSFEQIEGLFSRPLSKDQMEAIMELANQGKGKKGSKLRGCKVAPLKAPIIKAASGI
>CIN4E_ZM_pol#LINE/L1 3122-6580 [Zea mays]
MWQCLFKWRNGYYPMNTNCCIFSWNVRGLNDPAKRESVRQTILSTHATSVCLQETKIMNWTNDLLKDTVGYKLAKQTAHLPSIGASGGILIACDEDFFDITPVTYASTYSLSVRVSSRLEDVVWDLTAVYGPQQENEKMCFLSELCSISNLMKPEWLILGDFNMIRRVGEKNKGAINKRVMRKFNQTIDALQLLELDLIGKKFTWSNEQDDPTMSRIDRLMATTEWHGLYPAANLQALCSMTSDHSPLLMQGHSPCNFYKGFRFESYWVHIDGFKDVVQQAWTTTVNSSDAILRLHVKMVRTAKALKAWRRRTVGNIKVQLAIIKIVLTMLEKAQENRTLSSEELDFRRRLKIKILGLAGIQLSIARQHSRQTWVRLGDANTKFFHLMANHRKRKNFIRSLNCGDCLLTSQEDKLQEAHRHFLEILGTRGGRTSVVRWENLGYSPFELSELDTMINDDEIRNAVMGMHSEKAPGPDGFIGLFYKECFEVIREDLSKAINDFYHHKCKSLHLVNEANIVLLPKRENPDRIDLFRPISLINSCMKIITKIMATRLAPRMNEIVSTTQNAFIQKRSIHDNFLYVQKVIKKLHKSKQAALFVKLDISKAFDSLNWAYLLDVLKALGFTQKWRDWIATILGSSSSKIIINGQQTKEIKHMRGVRQGDPLSPFLFILAMDPLQRMIERAAHEGLLGQVLPNGAKFRCSLYADDAGVFVRADKLDLKVLKRILEAFEWCSGLKINFEKTEIFPIRYPESLWSNLMEVFPGKYSNFPGKYLGLPLHFRNIKRIEFQPLIEKINKRLAGWKGRLLSKAGRETLVKSVLTAQPIYLLTVFPAQKWLLKRIDKIRRNFLWKGENLDSCSGGHCLINWATTCLPKNKGGLGILDLERFARALRLRWLWLRWTNRDKAWTGLQLPCDKADVDLFNASTIVTIGDGKMADFWRSSWIQGQAPKNIAPTLFMKAKRKNISVCQALTNNRWMHFCSPYTHEDEIKEFISLWQGINNTHKLNDFDDTILWRWTTDGSYSSSSAYKIQFTTNFCKIKISPIWKARIEPKCRFFAWTMLHNRILTADNLQKRGWPCNPICCLCNLSQETMPHLGKDCPFSVEVWNMILSWVNLSFLSGVSNLGSLYDWWKRLRNRCCKESKKIFDGLIISF
>CiL1-2_pol#LINE/L1 1935-3838  fragment [Ciona intestinalis]
VREIITLSATTTKPRTTVRRKRIYMTTNVFKNVGMVGKSKINEKKECTEFSKYISRIERNRYIYSVQKLSDIKDSDENYKNNKEYINLQNNVNIYENKINQGAPIRAKVISFDNEEQPTKNFFEFEKAAHSRCSIYTIQNDQGVITDNKTEIIDIIHAYYTNLWEKDNKTQAQQNYLDEIETITWDQEETNYLNQPITDEEIKVDITSLNKDSSPGSDRLTPQLYKLMDNDFPTDLAELFHNIYLKKSMALTMRTAITKLIFKKGKKQELKTWRTISLLNNDYKILGKIINNRIKPILNKFISNSQHCGIQNKDIHRAIYNIQSAIDSARKLGKPLTMIAIDFEKAFDRVDHPFLLKMLEKLNFPYYITRWIKIIYTNLISKIEINGTFTDDIHIKRGIRQGCPLSMTLFIIGMEALTRKINRNNRIIGYKLRNIELKCVQYADDLTFLTERTSSLNEIKKELVQYEIASGHKINMNKTQIIRNNSETKECLATTNWQNNLQQTIKILGIHFSFEVDTTAQNWVKAVNTIRYILRVNKPRNLTLNGKTLLINTLIVPQLLHTGKHISLPLKYENILTQLMFQFVWSPSKIENIKRATLQLPKSKGGKAVPIIKLKIISAQLSRFYEIFTEIKRL
>CiL1_pol#LINE/L1 87-3143 via tfasty with L1_Cis99_3312-7124, 2 frameshifts and 1 stopcodon.  [Ciona intestinalis]
MKKYVNTIWLIFIYITFIMASYNVLSSNVNGLRNTNKRRCIFKFLKDKKGQIIFLQETYGSHKSDTLWEMEEGGQILSSHGTTQSRGVSVTFAKSCKYVIHGVKTDNNGRFMLIDATLVNTRVTLVNVYGPNEDDPNFYSKLGEELTQFSGNGVIMGGDYNVILSEELDRLGANKHPNVRARREVIKLMEDNEYVDVFRVKHDRTKKYTRIQTNPPSGSRLDFFLVSKSLLEKVTSCSISPSIKSDHSLVTMNINLQSVPRGKGYWKLNVSLLNDSEYVKTIRQGISEYLKYNKKCEMNPHTIWDCLKFVVRGLSIRYASKKRANVKERESGISDRINTLHLRLNIDPLNESVLNEIKPLQQELEKLYEKRTHAAAIRSRAKWVEEGEKCTRFFLNLEKRKEEKRAINKLQSGNQIIYEQNAILTDPKTFYERLNREDAIVDTDLDHYVINTNVPKLTTDESYSIETELSENELFRALCQIKNNKAPGLDGLPSEFYRSFWSDICNTFANNVKWSIQHKTLPESSRSGLITLILKPGKGACFADSYRPITLLNVDYKIISSVLNNRLKASIPSVISHWQNGFVKQRHIGDSIRLLFNITDYADSRKVPGALFALDLKKAFDSITWEFLHLTLTSFGFGTHLHSTXSPLYIMPPCVVINNNRISKSFQVRRGVRQGDPLSPTLFLFAIETLGQAIQISKQIKGITINEVSYKVSMYADDTLIVTDGTTESITATIKVLGLFGDLSGCKLNNNKSIALYIGSKRECTDKPLNGTKLTWPTNTFTYLGVTIPVSNSNSSLFKINFDGKLENIQRINLWSQRGLTLLGRVTIIKSLIIPTLLYKLSMVPALVPESFIRKLNRTIFCFLWGSGWERVKRTVLINGFENGGINMIDGRSYITAIRSRTIKHLLDPNYSAPWKTIDLFVVPKHILCALLGSRLSQRNEPYNSLLPLQSLRTNLLSWFKMIKKNSCPVRQQPLWLNKQVLIRRTAILYGEWAEKSIMTYGDILSETGSLDSLDTSNR
>HAL1-2a_MD_gag#LINE/L1 855-1943  [Didelphidae]
MTGGKEGKNMSKQQKKKKEITIDSFYPGNEQRANGTEEDQGTPSKNAETPANWTQALEELKTQFKKQLREAEDNWEKNLKSKISHLETEAHELKQENSVLKARIDQLENEAKKVKDDLQRKTDQKEKDDQKARDEIQSLKIRIQQLEANDFTRQQESIKQNQKNEKIEENMKHLIDKTTDLENRSRRDNLRIIGLPENHDKRKSLDIILQEIIQENCPDILEQEGKVEIERIHRSPPAFNPQLTMPRNVIAKFKNYQTKEKILQAAKKKPFRYHGTTVRITQDLAASTLKDRKAWNMIFRKARELGLQPRINYPAKLTIFLQGKVWSFNKIEDFQAFIKKRPDLNRKFDAQTQNSRESPKGN
>HAL1-3a_ME_gag#LINE/L1 815-1846 (HAL1-3_ME_gag > 92% identical) [Macropus eugenii]
MRKNKCLPSEEDIKVKASVSKTSKINMQWSQAMEELKKDFENQVREVEEKLGREMREMQENHEKQVNSLLKETQKNAEENNTFKNRLTQMAKEVQKANEEKNALKSRISQMEKEVQKLTEENSSLKIRMEQMEANDFMRNQEITKQNQKNEKIEDNVKYLIGKTTDLENRSRRDNLKIMGLPESHDQKKSLDIIFHEIIKENCPDILEPEGKINIERIHRSPPERDPKRETPRNIVAKFQSSQVKEKILQAARKKQFKYCGNTIRITQDLAASTLRDRRAWNMIFQKSKELGLKPRITYPAKLSIILQGKKWSFNEIEDFQAFLMKRPELKRKFDFQTQESREA
>HAL1_gag#LINE/L1 1076-1999  [Eutheria]
KYDSRNXNSIEGLEDKVEEXSQKVEQKDKEMENRREKIKKLEDQSRRSNIRXIGVPERENREXDGREIIKEIXQENFPELKDMSFQIERAHRVPSTMNEKNRPTPRHIIVKFQNTGDKEKILKASREKKQVTYKGSGIRMASDFSTATLEARRQWSNAFKILRENDFQPRILYPAKLSIKCEGRIKTFSDMQGLKKFTSHAPFLRKLLEDVLHQNEGVNQERGRHGIQETGDPTQERGEGNSQDDGEGKSQDDSCAXGLESNQSRLEQEDRRLQERXLQENETDRXPDVFEHIERRFIQLAESLGMN
>Isabelle_TM_gag#LINE/L1 873-3782 via tfasty with MIUSE1_TM_130-2229, 4 frameshifts and 1 stopcodon. [Triticum monococcum]
MDGLPHWDFKPGQAIAEQVRRRFGSTVHFSSSNGTKEFFLVVFFSSASFPLSVESVGIALQCCIGGSAEGFSITRLDDRKFRFSVASNRVGHFIYHLKDRIWPDFVCHFSLYRPERHAVPKNDSSWHWIIIWQIYRHANLWRLSLHSLLTHGLMRIDPSSVSELAKFDLLAQDLCTQRLSPVTGISSESSPPAGTLPRSFKQLSFGNNVPMHIQGNAFTTNLHFGSFLEGNCPSRAGDMEVNQHLLPNTVRIGDFQTLVPSLGNQLRNQFQGSKFRQDCWDAIPPFMLLYINDQRKFGYSVSHIAKIWSIQSVPPSEYINKRLNICYLCNGSGHQVDSCPDQACNICSSEPCVCSTGPPRVDPSACGLHYPGPQSCYLCGSLAHLYFHCPGLLRCHICSFLGHTTHSCHPLARRLHWKPKFGSIFLDTRMGNPCNSGLHKEGNIRDAYHLEKGKEIMANPITAVSLRHQINQPSINDIVPVRNATDSPVPTAVRCSSKGRSRHVPRLVGRVGGSRNXSGFPRGLEPVPIRILPCFSALIAPPLQSFHHLRMANFPVIVIPYLLQSMTIELGPEDRKVRDDMVISPTPPLRHDFLAIAEVNRFVPFHHKAALRHTIEGLLHESQFFPTKIDDHPLGVGIFGFVDSVTRDAAVGTTFKLDEDEGNIHTVISFVPHDAALNMRQTTYGPQIWLLYIGFPQDYQTSHYMHKSVDKFGELVTWNNPRGDRKLVLLKLELFICLVPKSFVMHQLGGERLCWTVCVTMLRSSDWNAHLPEIPPAGIDPLPANGIPHPLHGDGLTAEQLYQAQLNNWMAQNAQMNANAANNANGDNQGNEVHFQANWGQWPPSPPPALYNYQAWLAQEGLQVQDGIVPNNNLLDSPDRESSDMAASSAPLYPMDTPAAQLNSLEVVVSLTQNGLQFAMTEQGNVISSMLINQGFSFIRLNSFLRSTIMPLVLGALVLDSGMIACRLKL
>Isabelle_TM_p2#LINE/L1 4055-4537 Matches second ORF in MIUSE1_TM. [Triticum monococcum]
MEPEHSLVDVSPVETLPISANVTPEVYYAGILAEPGHSSATTLGGTGPDSAETIRKGKMALPMSSVSLRRSTRSNKYDGFKVPSITDSNPKSSKVKPRINPSALQSVARSEDAGSTAAPPPTPIATIQLVGTVKCDIPAAELSKEVLNEVNEDALSSLSSA
>Isabelle_TM_pol#LINE/L1 4558-8148  via tfasty with MIUSE1_TM_3261-6875, 2 stopcodons. [Triticum monococcum]
MVLLVNWNVLCWNVRGLNSEPKQLALFNAITASGCAVICLQETKKQSFDNNFIKSCCPRRFDKFEFVPARGASGGIATIWNNSFFSATVLASRDFALVIRFQSTQSAQDWTRVNVYGPCQGVERSEFIQXLLDLNIPHNEDWLLLGDFNFIRALDNRNKPGGNFGDMITFNDFIRSQNLVELPIKGRAYTWSNMQVDPLLEQIDWFFTSTNWTTSYPKTLVKPLGRPVSDHIPCVVCIETTIPRSKIFRFESYWVHHTGFMDTVTHSWSKPIRSTNMATVISRNFKHLRYDLKRWSKGISKLSIAIENSNMALFELDELENKRRLTTPESNFRRILKNHILRLLNYQREYWRKRCTIRWVKFGDEQPNFFQAMASERYRRNNIASLNTDDGYCVEDHAGKESVIFQAFKKRLGTSGRHEMKFDLARIIKKVEDLDQLTVPFTHQEIDDVIKFMHADRAPGPDGFTGHFLKSCWHVIKEDFYKLCNQIHEGNLNLESINEGFITLVPKINAPTSVNDYRPITLLNCCLKIITKLLTNRLQKIILKIVHRNQYGFLKGRSIQECLAWAFEYIYQCQTSKKPIVLLKLDFAKAFDMIEHEAMLEIMQHMGFNDKWLHWIKAILTSGKSSVLLNGLPGRQFHCKSGVRQGDPLSPLFFVLAADLLQAVINDAFAQGLIQLPFACATQKEYPVIQYADDTIMVLPACETQAATIKQILSDYATSIGLKINFQKSTLIPINCDDSLSNNIAQIFGCMTGKMPFTYLGLPLGSTRPSVQDLMPLVCKMERRLTATLNMISYGAKLSLLNSMITSLVIFALCTLKLPITIIELIDKIRRKCLWTKKTEQGESCNSLAAWSMICKPKDCGGLGILDLRTQSDALLLKYLHKFYNHWDLPWVELIWNTYYTTKIPHATDACVSFWWRDITKLMPIYRGITKVTIQDGRNTLLWKDLWMDSILASSYPRAFSFTRNEDISVQALLTAPTLGETFQLPLSEQAHAELMDLQQLLTPITLAHEEDRWTCIWAKGDYTASQYYSYYFRELKAHQTYKWLWKSKVTMKIEVFGWLLLSDRLNIRNMLKRRHYNIGDNHTCLLCDSPIEETLEHLFFTCPFSQECWSHLHIRWTTHGTRLQWIEQAKITWNRPMFMDIFLQAAWSIWKERNNKHFXGISPSKSSWLARLKEDLSLLRYRVGEKLIPFFYLFCR
>Karin_TA_pol#LINE/L1 2-2899  [Triticum aestivum]
LVAREWAKDAGGRTSVERWQNKIRHLRSFLRWWAKHLSGIYKVEKERLLTLIQSLDLKVESTILHTSELTAKLEAEMRLKELLREEELKWALQAKVRKVVQGDVNTQFFHMIANGKHIKKRIFQLEQDEGTILGQENLKLYITEYYKQLFGPPEDNCVSLDESRIEDVPQLAADENDILTAPFLEKEVFEAISQMKNNKAPGPDGFPAEFYKKCWHIIKGDLLLMFHDLFSGXLQLFHLDFGTITLLPKKTEAVRIEQFRPICLLNVSFKIFTKVGTNMLTQIAHSVVQHSQTAFMPDRNILEGVVVLHETLHEIHMKKLDGVVFKVDFEKAYDKVKWSFLQQALRMKGFDEAWRRQVESFTQKGSVGIKVNDDIGHYFQTHKGLRQGDPMSPILFNIVVDMLAILIGRAKEAGQVDGLVPHLVDGGVSILQYANDTIIFMEHDLAKARNMKLVLCLFEQLTGLKINFHKSELFYFGRANEEQEAYRQLFGCELGTLPFTYLGIPIHHSKLTNRERKCIEDRFEKKLSCWKGKLMSYGGRLILINSVLTSMPMFLLSFFEVPVGVRKRLDFYRSRFFWQSDELKRKYRLAKWDIICRPKDQGGLGIENLEVKNVCLLSKWLSKLSVKTEATWAQILHSKYLHSKTLSQVIARPTDSPFWKGLMRVKSAFFNRTKFIIGNGTNTRFWEDTWLGETPLALQYPTLYSIVQRRDASVATVFQSIPLNIQFRRTLAGNRWEAXIHLVHRLMEVQLSQQPDQLHWKLTRTGEFTVKSMYLNVIHSSPIPSSKHVWKVKVPLKIKVFMWFVHKQVILTKDNLAKRNWTGPTRCSFCDRDETIKYLFLDCPLAKVLWQMVHIAFNITPPNSVSTLFGTWLNGIEAETARHIRVGVCALLWAVWNCRNDLVFNRTTNFHFLQVIFRATALIRMWLLLTPMEARERLVTGSIRWEMVTWNIFNRFGWRSCNRIGN
>Karin_TM_gag#LINE/L1 786-2507 [Triticum monococcum]
MVAVVGAPSKPLQDVRVVASLGTLVGKTKRVDMAFTRAHGVARLLVSVLDIEFVPDVVNWTYRGEVFPLDVEFEDTDLFADTVNGNDVDMHEGDGDAGANGAQPDESAREGSNASRPDAQLPGDGTGVEPAASPSVPMTSLRFGSFEPASAPPRLWSDRVDSDDLFERTLPLLEFEGAGGSGRLVRASSVRTLDGDGVGEPEVASLSLPSLVVEAPVRMATCELVLGGGGSGQEALMSPLHIPTPVTPVPLGSASAGGGSPRQVASAPATPVVAATHAPSSALGEGLGQEALAHPSSPAVLRTASPSPIALPSAPADGMGGERGQAAPVIPSTFAPVAEDSGVGHPSVGLGSPQPPPLVTSVAPLRDSAPGFTREEVAAFGGIPDPASTGRRMSARIHELPEVDDMQPRCAMRAAKIHEVASSSGMSVNVSNSLLHFSNEEIINNANQLGVSLGATDTEINNSVNDLLDLEAERVLETIRNLAAAKPMNDQEINALGVRVLDSLCADLAPPNQVGEDDDVPIEIDADNLSQPGYEDQEAEPSKPKRKWKRKIYPDSAVRRSARIRITKKFHDEI
>Karin_TM_pol#LINE/L1 2507-6178 [Triticum monococcum]
MRGIFWNSRGLKDLAKRRFLAEAALEQKLDFIALSETGRENFAPQFLSSLVGGIDFDWHCLPPRGRSGGILLGVRCDSLQVRSGVMGDFAVKFRVRSKIDGFNWALVAVYGAAQPELKPEFLADLVRIYGSEQLPILVGGDFNIIRRREEKNNDNFDGRWSFMFNTIIESLDLREIELSGRKFTWANTLPNPTYEKLDRVLASVEWEQKFPLVTVQALSRRISDHTPLFVDSGEPNHMGNKNTFSFEMSWFEREGFLDLIAREWARGAGGATAIERWQNKIRHLRRFLRGWAKHLSGVYKMEKDRLLSLIQALDIKAESIILLPAELQVKNEAEKRLKELLREEELKWALRAKVRKVVQGDANTQFFHLIANGKHRKKRIFQLEQDVGTILGQDNLKTYITEYYKQLFGPPEDNYVSLDESRTEDVPQLTAAENDILVAPFSEKEVFDAIAQMKNNKAPGPDGFPAEFYKKCWHIIKGDLLPMFNDLFSGQLHLFHLNFGTITLLPKKTDAVRIEQFRPICLLNVSFKIFTKVGTNRFTQIAHSVVQQSQTAFMPDRNILEGVVVLHETLHEIHSKKLHGVIFKVDFEKVYDKIKWPFLQQSLHMKGFDEAWRRQLESFTQKYSVGIKVNDDIGHYFQTHKGLRQGDPMSPILLNIVVDMLAIFIERAKENGQVGGLIPHLVDEGVSILQYADDTIIFMEHDLAKARNMKLVLFLFEQLTGLKINFHKSELFCFGRAKDEQEAYRQLFGCELGELPFSYLGIPIHHRRLTNKEWKSIEDRFEMKLSCWKGKLMSYGGRLILINSVLTSMPMFLLSFFEVPVGVRKRLDFYRSRFFWQGDELKRKYRLAKWDIICRPKNQGGLGIENLEIKNRCLLSKWLWKLSTENDAMWVQILRAKYLQTKTLSQVSVRPTDSPLWKGLMKVKQAFFDRMRFAIGNGSSTRFWEDTWLGNTPLAIQYPSLYRIVQRREVFVASVFQYIPLNIQFRRTLADNRWEEWLHLVRRLMEVQLSQQPDELRWKLTRSGAFTVKSMYIDVINSNSIPTSKHVWAVKVPLKIKVFMWFVHKQVILTKDNLIKRNWTGPTRCSFCDRDETIKHLFFDCPLAKVLWQTVHIAFNITPPNSVNALFGTWLNGIESDLARHIRVGVCALMWTIWNCRNDLVFNRISRIHFLQVIFRTTALIRSWSLLTQTEAREHLVTGSFRWEMVARDIFNRFGWRSCNRIGM
>L1-1A_VC_gag#LINE/L1 130-2757  [Volvox carteri]
MLQTRAAKTADRPKIQTGRKTATATRPQTTQRKVKREEFTPLELNILASPTERLFVLCPETWELVAHWPPGSDISDVYAQSYGRLVEHIISKLKLWAKSADLEALEGPAVTKRRIFPMKDKRVAMEISVLMPPGSLARLTNSELLREGRLQLGGVEFYPGQEPVNVELTVKGLDKIVPRRWEVSGLPLGITRQGVTAFLAMAYSRVSGRQWKREEFGFPCKCPFQADKWAVKLPAGNFNLPAELPYTYGTPGDSTHCTGTLVATKVPLALEAAPAIIGCLPPARKGAQPKMTQIPESGPSRSNAGTVVNGTWAAIARTQRGTTATAATGRTNAPEMARHNIIGPSPMPPLPAFSGPIHTVTHLGSREPVMELQVSGIQAAVAAQIPTPAAVEIGSTSAPRPPPPPQSKGGPDLQPGPSSSRALPPQPNGSGGSGSKPATQPRGNNTEGSPGDAGWMRQEKRGKKTPIPDPQEARQETVVAAPHQAADPTPGATIAADAPPPTPPTAPTHSALGLETTHMEMEAEQTQAESDLADEGNPYSVLAELRDEEENPPGQTKAPGAAATTPHPEQNTAPGAAATNPPLEQNTAPDAAATKPPLRRTTAPDAMSLRIEERAQEAANPPPGQPKQPQVAIVFGTPHKAAAIQLTPIREQPWKPVAEQAGPANNAQTNREWPSPPPTQAAGKNTTMGSPKTQAAALFAQVEPIQLQMTRPMTRSTATAAKAQLTHMAIVKKQRRPDLRDQARKDHFKKLTEPARTARRQSAELARQAKEAREARHREAGKQKRGDIWQANRKNRMAKTGGATTGKTVEDIAMEEEAGARQGPEATEKEASDPGSPQAGSQISSLILQVPTVTQPDVETESPPGEGSSVSHTQQT
>L1-1_AFC_pol#LINE/L1 691-4427 via tfasty with L1-11_DR_pol, 3 frameshifts. [Cichlidae]
MGMLRFVTWNVNGAGTRGKRLKIFNQLKKLQADVVLLQETHRPVTGLNELKTPEFPNVFAACYNSRQRGVAILIHKNVNFTVLDTVIDPEGRFLIIKLSILEQKTMYCKCIYGPNVDDPSFFHGFFSALSEHLDCTLILGGDLNLGLNEDMDRLNTTGTQRNWQSTNIIKQYMSDFGLCDAWRSLHPTSKEYTFFSHVHHSYSRLDYFLVSSSLLCDISDTEIHPIAVSDHGPVSLTLMHKNNTTPRKNWRFNISLLKDEDFIKYFKKEWTSYLDFNDTPGISASVLWEAGKAVMRGKIISFSSHKKKEENKNIQELEKNIKSLEEAYASHQDQETLNKIRKTKLELNEIIDKKTQFLIQRLRLQNFEHSNKSGRFLANQLKINKEKTTICAAKDLSGNTIYDPGRINNIFRDFYETLYSPQINPSKNEIDLFLDNVTLPKLLDSQAMELDSPLTPGELQEALISMPXXXXXXPXXXXXXXXXXXXQILAPVFHXMLXEIEEKGRLPSNMNSXNISLLXKPGKDPLFPSSYRPISLINVDLKIICKALSKRLEKITPLLIHPDQTGFIKGRHSSTNXRRLLNLIDYSYSKNXETTILSLDAEKAFDRVNWKFLFATLHKFGFGNSFINWLKILYNSPTACVRTNDQTSSSFCLLRGTXXXXXXXPSXFAIFIEXLAAAXRQXTTIKGIKCKNVEHKISLYADDVLLFLQNSQTNISGVIELINSFSRVSDYSINWSKSTVLPINCSFHNSSSAPLQSGNIKYLGINVSPKLSDLTKLNHIPLLKKVEGDLARWKSLPISLMGRVAAIKMMVLPKINYLFSMIPNKPSQDWFRSLDSYISKFLWKDKPPRISLKTLQRTKDRGGLDLPNFHQYFLANRLQFISGWLKHTFLDEPWLDVEQALCKDLEISDLPFISSNIKRHECFKSINISSSLTAWWEFLKLTESSLIPCKRTPIWNNPDILQNNNMINFPDWSGKGIKYLEHILEGTEFIPFDRLVAQYGINKKRFLEYQQIKSIVKKKFKPGQVELQTPPSAAQFLTLKSPKLLSKIYRTLSKTDESISLPIAKWEADLSVNLDQNFWSQICLKTFHLIRNPSLQLIQYKILHRVHYTGHRMFKMGFTSTNNCSHCQANSPDNYIHALWFCPPVQKFWREICEDLSKCLKCNIPTSPLVCLLGSLDNVTSEKNIAHMVFTALCIAKKTVLMNWKNKNNLNSNQYRNYLLDYISLDTASATTSDQLLWAPLISSIT
>L1-1_Acar_gag#LINE/L1 253-1146 [Anolis carolinensis]
MEQAGDNSXIPGKVMSSDEKLDFLMTLMTEMNTSIKSLASEFVDIKTTLSEIKHHADDNESRIEQLEKETKFLKTKLIDSENRLRRRNLRVKGVPENIKDLSQFVIELCSNYGISLSENDIERAHKSPPFKKPQSAFPRDTIVAFAREKTRDLIFKKLRSIWNLHYKDYKIFIYPDLAKETRQDREALRPITRSLNKAGIRFMWSFPATILFHRDGKKYTVKTLREGIELLKELGIYQDMAGDKTLGRGPEDGREVPKDTPREERGGGEEAERKKRQKTGKKDNYQRMQTRSTDKQFN
>L1-1_Acar_pol#LINE/L1 1631-5386 [Anolis carolinensis]
MLMGDLNIMSVNINGLKSEVKKHRLSKLLSENQIRVALLQESHRQDTRTKLLNFTNWETQFESKGSSRSRGVAIIIKNDLNFETGKVITDGEGRFIMVCGKINNCKVSFISVYGPNQRQKRFINKIFKKIDQEAEGDIIIGGDLNLDLYKKRKNGEKNKVNFKKWNIQEVNERTGRRVDTPTFYSARHNSFSTLDYFFVGNNNAWPIIETSVGSRWPGDHAPLFLKLGISSRKIEYKWRFNPLVTFKDQDKQELKEEIKHYFRINRSPDLKENTIWDAFKAVIRGKCITMEWGIKKRLKERGEELKQEGDKLFQNFQKNPSVQNKERWKENKKVLEDLEKIEVTKKYLFVKNDFHVNSINNTKRLASYLKKKKGRNMVTKLKDENGQIKTKEEDLREIMASYYEKLYANKETERSEGVVVRKLDPQDQIGLNKTITSKEIEEVINNLKPNSSPGPDGFTSNFYKIFQSEIIPNLEILFNEILKNRTIPETWKRSEIITILKPNKDESDPNSYRPITLCNVDYKIFTKLLANRLTDIIPKLIGEDQYGFIKNRRLADPIRNILNVINQATREKEKLLLLKLDVYKAFDTVNHHYLQQVCEEYNLGREFCEVIKELYKDNRAQLLINGTRTRIIKINSGTKQGCPLSPILFALAIEPLANFIREDDKIKGFKIARELIKINLFADDAMVLMGSPMESIKEVIQTVKKFENLSGLAINIQKSEILHKNLSWKELKEIQTISGIRLGEKKLKYLGVYIPKNLNNIIQLNYNHLWKKVNNQIRNWNNRNWDMSNKIKIVKMMVLPKFLFLFQALPYSIPSKIIKKWDNSIKTWITGRNKNRIPNSVFYSSEQNGGWGAPNLQDYYEACQLTRLLELDFDDSRRWVRIEKTINGWHNCLCLKGWVDNKILKEIKGGPMISSMECWKKWQGKLPINKVDILPIEFLNNKKEQIFGKAITNFKQNGMKLIKDLLNPDGTIKDWEMIKDICGQSNWLLWSGLKQRIMNWKKKEGPETDFDQILKWKLEKEKGLMGFIYKILTEKQYKLKQTLAEIWKEDMNINDSDIEYWINSIKKIKQIRIRETQRKILTKWYRTPIQLAYITKTTTKLCWHGCGKTGSYIHMWWECDKVQKFYNKVKKEIEDLTGHKLILKNKEFFIQKLDKNKITKDWGEIIKYMLVAAQATVALGWKEQTKWEVKKWYEYLADFMLQDYILERRTKYISGRIKKNWELKWGRLIDRVKGQRKYKELNHSLLTIDQLK
>L1-1_CR_gag#LINE/L1 1057-2109  May have to hide this one; no matches to other gags so far, prone to low complexity matches. [Chlamydomonas reinhardtii]
MALPRRRPGVGDGCNQPRTHRRRRRSNSPAPKGAVAPPSSRSRGQGAWAAGCLPRRTVLARRRTCPLGGRPGDSRLVGAAGRGARVEERGGQCPSRRPRRGRHCRRHNRRVVVRAGAGVSADTAGRAGGGAGSEAEYGAVCLTRDTCVAIGSDLVTHQNRCADVQGYEWAQLGRDTLGGRLLAYLRDQGATVPDWAVCRVPAGRTAVLAQLHDEFTGWWRLYSAQPADTPLPSDVTEQLDDAAQQVQTAYMDYVLLDARTLRSAKRGPADPGGASGPSRRQRQHRSRSTSSLMSLGSAPLRPGGASSGAASMSTSSGGAPPSQGGGRRGKRHSSNSNRNRHGAAVAGGGS
>L1-1_CR_pol#LINE/L1 2109-6713  [Chlamydomonas reinhardtii]
MRPPVGAANLRLLTVNVNGLGSPFKARALVSHLQQVGADVAMVQETHATDTTALESCLRAAQGACLPWRHCLAASPAASPHSCGAAILARSRLSLPGCVLQPPSTDAAGRVVCWDWDVGHLRLRFVCVYAPTAVADKPAFFAGLHPHLATDRVLVVGGDWNCVTDASQEAAPSPSRAAGAPQLASLLAQFSLVDPWASKRGGAKGYTHPATPKPATPARLDRWYVSATAAPWVVDVARTYGAPGDHNGVLLTLSLPDLPHAHREQWRFPTYLLFHPSLRLELEQRLEAHVAANPVASTGDGACTQWEADKFFLREAATSIHRRHARQTRDGLHGVVLAADAAAALADRPGASAAQRQAAAMANLAVREERAAAAAASHNARAALMEEHGERGTRWFHRQADEPAAGAQEPITHLKVPGQPAPVALTGPGTRNTVSAAAAAMYSSTSPTGLFRVQPVCTASQQQLLAAIDRKVPADLQAAAEGSGDGALSDAELMAALAGSANGKAPGSDGVPYEVYKVFWALLGPRLCAAAAAAFAAAADAHDGGEMAAALPASWREGIITLIYKGKSLDRAELASYRPITLLNCDFKMVSKAVSARLQPALDAVVDELQTAFITGRWIGDNALYLQGLIEWMRLDVGADGTPRQGGALYFLDIEKAYDRVHRQWLYASAEGLGFGPRMLRWIRLLTANGSARVCVNGMLSDAFPVLNGLPQGSTASPPLWVIQMQPLTSFLRRQVEQGALRTPLLPSGEQAPPAAHHADDTTLTARDPAVDGPVLMAAVQLFCRASNARVHPDKSKAMGLGRFAHLTGPCPHTGVPFTTGAVTHLGVPLSWDSDAAAADLYTRRARGMAFVARLWAALSLTLVGRVHIAKQVLAAKLAYHFSFLNPSPAQLKELTDLVDHFAARSMHAEDASLVSHGNPLLLPKRETACLPYKDGGVNHVDLPAFLSALQAKTFALLAQPGRQPWKMLTRALLTHVRPDSATTWAWVYSDAPAPAGLPARLAAAVGHVRSAGVEQHPPQPATQPPAAPPQWRVSLDQLWVANAAGAVSYVHYTGRLLEPGPGVLPPAVDGAWQPACVLQHRKPRHLWTFEERAAYDAASPGERAGAWPRAPYFLAPEAGVVVHPEHCRIAGVSLADYTVRDVRRAITAANPAAPPAPARPAAMPCPAPAQQAGGSGTQPAAQSRLAEREAEWQRAAAQLTTTAAQHFHNNPVALDPWLHRTSAAAGLQNTPARELQSYASPSQQSGEGPRRSARLQEQAAGGAGPSTGPATAAAAAAAAVEGDPRMPPPDASLLRGTWRRLWDSHASRGAKVLVYRLQHAYLPCGLYRAGKGIRPRVTTGCGGLGAHCPHPACGPPGPRAWASLTHIFLECPAYAQARTWLQQLWACVAPQAAAPPVTDAGFMLGDRMGMWASGPRGAGALLWSTLRATFLYAVWCAYWSREPAKQTSEHVVREVVSELRRVMQLRFTAATLTPETLSALPTQLLTAQLKAAKLEHFVAIWSAGGALCEVEEVQGGSPKLNLRLTLASPVQAP
>L1-1_DR_gag#LINE/L1 172-1056 [Danio rerio]
MAGKLRKYKYTGKTAANQEDANTPSMMSEPAEHTDILEIKAELISSIKTEITSLFQKELKTALSNEFEMVKAELQAVKSEIASNASAVRSDLEAIKTTVSDMERGLSSCSDDVTELQNTVRKLEKNVVTLQEKCLDMEGRMRRSNIRILNVAEDPGACTPASVSKLLKDTLKMDKDILIDRSHRTLQAKRADGKPRAIVAKLHYYQDCVEILRRVRETGPLHHNGATIFIFPDYPPSVARARSAFNEVRKLLRGKDGVRYGILHPARLRITHNGTEKQFQDAAEALTYVKNNIL
>L1-1_DR_pol#LINE/L1 1665-5492 [Danio rerio]
MVKPHNVNASGICQVNLISWNVKSLNHPVKRGKVLSHLKQLNTDIAFLQETHLKTFDHFRLRGGWVGQLFHSTFHSKSRGTAILISKTVSFEASKIEADPAGRYIMVVGRLNNTPVVMVNVYAPNWDDSAFFTGLFSRIPNIDTHHLILGGDINCVLSPSLDRSSLKPMIPSRTTQVINQLLKTYGMIDVWRFQNPGCRGYSFYSPVHKTYSRIDYFFLDSELLPLVSECKYNAIVISDHAPLLITLDMPITSNNYRPWRFNTLLLSDVEFVKFISSEIREYLVHNQTPGISSSLIWESLKAYLRGQIISYSARLKKKQHERLKKIENDIFKLDEILAHSSTPDMFRQRLALQSEFNLLCTKQTENLLIKSRHKMYEHGEKIGKILAHQLRQQNAAHSIMSVNDNTGTKLTNPLEINHRFREYYSQLYTSESCKDESLFDSFFKKISLPTIDQEFALDMENPFSKDEFIRAVSSMQNGKSPGPDGFPSEFFKKFSGELAPILLSLYEESSVTGSLPETMNQAIISLIYKKDKNPSECSSYRPISLLNVDSKIFAKILAHRLEIVLPTIVSGDQTGFIKNRYSFYNIRRLLNILHHPTPSDVPEVLLSLDAEKAFDRVEWDYLFYTLKKFGFGTKFISWIKILYSSPMAAIRTNCHISPFFSLERGTRQGCPLSPLLFALVIEPLSIAIRNDINIKGIQRDNFEHKISLYADDTLLYISEPLTTLPQIMTLLTAFGKISGYKINMQKSELMPINNAGRKIIFTSLPFKITKDKFKYLGIWITNKYKHLYKVNFPPLIDSIKKDLERWNPLPLSLGGRINTIKMNILPRCLYLFQCIPVFLTKSFFLLLDKLISSFIWNGKNARIRKNILQRHRDHGGLSLPNIQQYYWAANIRAMLHWSNPSYDSGPNWLSLENTSNFSTSLHALLCSNFPTPEPLSKYSLNPVVKHSLKIWAQFRRSFALKGLSAYAPIARNHMFTPSTIDKTFDIWSMKGLKILKDMFIDGQFASFQQVKVKFQIPNSHFFRYLQLRSFVSSSMSHYPSLPPPSLLDSIMELSPYSKGLIGKIYSIINSHNLEPLVKLKRKWEVELEIELSEDMWQSVLDNIHSSSICLKHRVIQFKVVHRLHWSKVKLAKFKPNIDPNCSIEPATLSHMFWACSKLKKFWHLIFKFLSDALNTYVEPEAIISIFGITPQSLCFNKSKINVIAFATLLARRLILLKWKEKLPPTFKQWLMELLHHLTLEKIRYTFGGCTDMFFLTWQPVLDHVKKMDPSVILEE
>L1-1_DV_gag#LINE/L1 736-1764 [Didelphis virginiana]
MASDPRRAPATKGSKRKPTTLDSFCTXKGTQGTEETGEEGRQGTSPKAAPPSQGENCPQAFLELQSKVMRMEEIWQERWEAAQKENNSLRARILQLETEAQKSNEMMKARNEQLEAVTAENQSLKTRIEQMEANELKRQQELIKQSQKTDKLEGIIKNLSDQVTDQENRSRRDNLRIIGLPENAETNRNLDIILQEIIQENCPDVLEQEGKIDIERVHRTPSTLNPQKTTPRNVIAKFKSFQAKEKILQEAKKRQFRYQGTPIRITQDLAASTLKDRKAWNMIFRKARELGLQPRIIYPAKLTIYFQRKVWAFNKIDDFQEFVKKRPELNGKFDIQTQKPRET
>L1-1_MD_gag#LINE/L1 752-1675 [Monodelphis domestica]
MTNSTEAQKPQNTKKNKKKGATLDTFYGAKIQNTEQIEEDIQENSPKSSKGNRNSPQTHEEFESERTKKMEALWEEKWEMMQKKFTHLQNQFDQTVKENQALKQELIKQSQNTKKLEENIKYLTDKVIDLENRGRRENLRIIGLPEKPEINTKLDMVIQDIIKENCPEILEQGGNTXTDRAHRTPSTLNPQKTTPRNVIAKFQSYQTKEKILQEARKRQFRYKGMPIRVTQDLASSTLNDRKAWNMIFRKARELGLQPRISYPAKLTIYFQGKVWAFNKIEDFQLFAKKRPELCGKFDTENQRARNT
>L1-1_ME_gag#LINE/L1 624-1388 [Macropus eugenii]
MEKEIQKLNGENSSLKGKIGQMEKKMQKLTEENNMIKIRIGQVETNDSMRQQESVKQNLKNEKIEENVKYLIGKRTDLENRSRRENLRIIGLPESHNEKKSLDSIFQEIIKENCPEVLDPEGKIVIERIHHSPPERDPKLKTPRNIVAKFQNYQVKEKILQAARKKQFKYQGDTVRITQDLAASTLKDRRNWNPIFCKAKELGLQPRINYPAKFSITFQARRRSFNEIRDFQSFLTKTPELNKQFDLQMKVSREA
>L1-1_Mad_gag#LINE/L1 1-2112  Overextended to beginning. Clip a bit. [Malus x domestica]
MHRKELGEGRRKGWERGDWEKRERVLPSSRLSGRNVRYKHLARDFKVEQKVFILEVEDKSLGERICLTERTRFRGFQISFDLGCASWLSVQIKTAITASARSFFRLYRGLNYQFWVESFNNKNGIFLVLSKSENQGLVRKIIVPKGVNFFGWRKMEELLSEILRGGKKGGVASGTLFQSKRLARREAPEPPRIHSCVVPQLSYKDAALGGIKATNLVPNAIAGEKIWIEKSRTKSDKSPEAFNWGSVIVCERQVVHQPWREVEDSLLNIMGRKASLVPFQCNKALFVCKNEEEAAQIAQIGVLSMIGFPEVVLSGWWESIKPSERKVVSYGGWIALEGLPPHLWTSDFFHEIGDACGGLVEIDRKTADFEFLLEAKIRIKQNNTGFIPEFVEVADGDFVVRVKIRQLSPARRPKASVAEYGESRHLKMSRRPLKAELKTQKANGILPPAMAISNPGNQSCPSVESRACFQIGEFKCPITMGSGRKQGVLSGEKLTDGGRSKELEVYVREKQGVLSGEQKLSEGGSNSPSGKFVRVEEGLISNGGDYFNLSKGLSSTVGGISNCLEKEFYIHEEVASGFXTHQGVFNINFEGKVGCGPIKAYDGQSQVDCGSTSDQKIFNVFVGGKDGSGPHKVCNGHIQIGAFLGYPQRPITLEFFGLNPRAHHGNEVMVMPNFQSVDLFTSRWHQKGAPLGPREGNRSHYNLQ
>L1-1_Mad_pol#LINE/L1 2855-6517 L1-2_Mad_pol over 86% identical [Malus x domestica]
MKIISWNIRGLGSRRKXVLLKDYFRRARADIIILQETKTATIDRKLVASVWGSRFKEWVFAPARGSSGGIVVMWNTKHISVVESLVGVFSVSIKIRESNGLEWWLSGVYGPCKYRERQDFWEELAGLYGLCGPRWCVGGDFNVVRFENEKSNGGRSTASMRIFNQFIQDSELIDPDLLNAQFTWSNFREETVCRRLDRFLFSGGWEESFPHARQKALARVTSDHCPIELDTNKVTWGPGPFRFENSWLQHPDFRNNLKEWWLSAIVEGWEGYKFSSKLKIIKKKLQSWSKEVFGDTERNLKEAHAKLEEIDFKEGREGLDPDSKRKREETRFLVEDLAWKEEVKWRQRSKVEWAKDGDGNTRFFHKVASGRRKRNFIERLEAEDGRMVEGVEEIENEIIHFFKSLYSSNEEECWGLDGINWCPINATEAAWLERPFEEAEVKKAVFDCGNDKSPGPDGFSLQMFQSCWDILKADILKVLEEFFENGIINAVTNETYICLIPKKADSVNLRDYRPISLVTSLYKVVAKVLATRLKNVMGSTISPSQGAFVKDRQILDAVLVANEVVEEVRQKKEEGLVLKIDFEKAYDHVDWRFLEEVLLRKGFGYRWRKWVLGCISTANFSVLINGRPRGKFKASRGLRQGDPLSPFLFTLVVDVLSRLIEKAQENHLIXGLRVGQDNVEISHLQFADDTIFFLAGHEEAWNNLLHLLQIFGKVSGLKINKAKCSLVGINSDGEKITRLASSWGCEVGSWPMKYLGLPLGGKPKSIKFWDPVVEKVELRLQGWKKAFLSRGGRLTLIQAVLGSLPIYYMSLFKAPRGVIGRLEKLMKGFLWEGVEEGKKFHLVKWEKVCKSKEEGGLGLGNLRNRNAALLAKWLWRFPRESNSLWHRVIKSKYGLVANGWDANCPSRGSSRCPWTDISAGYPPFLHSCNFEVGNGERLRFWEDGWLEGGPLKEQFPRLFSLSRTKNQSISNLVASSLQPVSWNLEFRRNLRESEIEEVAGLLQKVESVRLCHSREDRRRWNLEGSGQFTCKSYNSFLCNNDVVQQFPPFAQIWKAKVPPKVKILVWLVALGKVNTCDQVQRRMPFACFSPHWCTLCKSGEESVNHVFLHCPYSIQLWWKLLKEAGARWVTPKGCFELLSTKFEGLGKGRKAKTLWGSLLMALFWNIWLERNKRVFEDYKGVGVEXLWDRVKHWAALWASVSVEFRDYNFSSIFRDLLAAVI
>L1-1_NV_gag#LINE/L1 134-892 [Nematostella vectensis]
MASGATESVLQKICDTLERVEKRVRVIENSVACLEELRKDVNNMKIECEKFKDGLTDLETGVGSIEEDVAEITERLETVATRETTDQLLTRVEGLENRSRRNNIIIHNVPEEAEKNSPSAIDFVQKFLRNELEIQQPIEVERAHRSPNKKRHDGSARPIFFRLLRESDKRNVLMAGATTLKGKELKKRNKKERIFITDDVTEAVQKQRKQLWKRFLELKASRQAPNMRGYTMWSVPAAVKYQDTDKVWRYIR
>L1-1_NV_pol#LINE/L1 1254-5021 [Nematostella vectensis]
MILNLLSLNIRGLNMSRKRRKVFRWLHLQRKDIYFLQETFSSKHNESYWNAEWGANCFFSHGTTHSKGVMILFNPKLDITVKSSFSDPNGRFILLEVSLDGEDFTILNMYAPNDNKQQCDFYDKIAKVLKDAQSSNLIVGGDANCALSQLDRFGSDWGKYKQNKKSVIKAIRSLQLSTSLKDPFRHIHPDEATYTWRNKSFTRQSRIDYWQISESLLNEVRECKIIDAASTDHSAICLSLGRDPAKKRGPGFWKFNNALLKDESFVEKMREKIPVFKQKYTELHYDKGLQWEMLKMEIRSLCIQYSKRKRKDCRNKELDLIRNVNSLQRIAEQAPTQENASKYYAQKQKLDNILEEKTRGCIIRSKSRWYEEGGKNSKYFLNLEKKNYTSKWIQTIELNDGTIVSEEKEILEAEKNFYETLYKSSLDKSNLPDDLDIFHTNENLRKLERLQAESCEGLLSPEECLEVLKNTQNNKTPGSDGLSYEFYRFFWDQINSPLVESFNHAFRTGKMSVEQRRGVISLIPKKDKNKKKLENWRPVTLLNTDYKIATAAIAQRIKKVLPAIIRPNQTGYIEGRFIGENIRLINDILYYTDQQKLSGIALFIDFKKAFDSVEWSFLRKALEAMNFGPDVVKWFSVFYNQTSSCIINNGIASEFFSVQRGVRQGCPLSGILFAVAIELLVCAIQHDPNIKGITVNKNEIKYSIYADDLTVFLKDACSGEKLFELLNKFKRVSGLEINKSKTDALWLGRDKEKRETPLGVNWPRHPIKALGCAFSYDNEMNDKFNFEDKAESLQKLLHTWKGGNLTLLGRINIVKTLGLSKLVYSMTSLVSPPGFGKKIDSIIFYFVWNGKTHKIKRSTLIGEKKHGGLNMIDFNTFERSLKLSWAKRFLSDSIAPWKIIPLHYLQKFGGTFMLFCNYDVSLLSTECHNVIPTFYTVFLKYWANIADIAEEQFGPSRRWYNDIIWNNKNIKIGGKTVYYRKWHQAGITYIHDLYSARGEMIPISEFQTSHDLDCNFLTIMGVYNAVSHYVNKAAMADDEQPMDEVKAFNQKALLELGNLTCAAHRKLLVTAAFAAPTAEKRILDSGVPLTELEDVYALPFKVTSETFLNVFQYKIVHNILPSNSLLFKMNLSESPNCQFCNELHNLEHIFAKCRTAIEFWSHFLKWFRDKSSLEILPSPREILYGYKPKEKRFIGVNHAIIIAKYSIFRNFSNKLAPSFEAFLSLFNDKLNIESGIARENHKEKQFNEKWKMFLK
>L1-1_PTr_pol#LINE/L1 96-2200 via tfasty with 9758853_Ath_pol, 1 frameshift. [Populus trichocarpa]
RLTDFRPISCCNTVYKCIAKILAGRIKVVLPSLVVHNQTAFISGRRISDNILLSQELMKGYHKSTGPARCAMKVDLMKAYDSVRWDFVDAMLIKMGFPRTVIDWIMVCVTSCQFSINVNGELAGYFQGGRGLRQGDPLSPYLFVLCMEILSGLFCKMSANQEFKFHWRCKKDKISHLCFADDLMIFSNGDVNSIRMIRTVLTKFQDLSGLYPNPNKSDIFLSGVLNAEREQIIHILGFREGELPMKYLGVPLLSSRLKAIYCKGLVDRITSKVRHWTCRTLSYAGRVQLINSVLFSIQVYWASLFLLPGQVIKNVEQIMKSFLWSGSDMRTTGAKVAWDQVCLPKKEGGLGIKRITEWNKIALLKHIWNLCNDSDGSIWSTWIRSNLLRGRNFWTIKTPQNCSWAWGKILKLRSLAWPKMKYIIGDGMTTSLWFDNWHPHSPLADSYGERFIYDSGMAKNAKVNVLIQNSEWKTPTTQAIGWHPIIEAIPSNSNPKMGQKDEIVWLDSPNHRFSVKVAWEQLRRHRQMVEWHDIVWFKNAVPRHSFLLWMAVQQKLTTQDKLHRFGIHGPNRCSLCLRNNEDHNHLFFECSYTKAIWWDVCDRCDIPRMTKGWDEWIRWATVSWHGKSFVNFSRKLSFAATVYHVWQERNARIFAGMSRTPNLVLNQIECIIRDKLDLMRNVVPTNENKRIQRAWRVNTIDS
>L1-1_SBi_gag#LINE/L1 1139-2953  [Sorghum bicolor]
MVAAPGPVAISGGELLPRRPRAPMVVVPRSPAVQAAEDSLRLALVANVAGNRPPVSTAMLRDHLVQHFGLTAGEFDVRRHFPEDFVVRFQHGADRDRVLASRRPSALPMVWYPWRRTTLAHLGTFKFKVLLALSRVPLHARSVQVAQTVLGPACANIEESLLRDREDDDDRDFFVTAWCKHPAFVVDRNLIFIPEPVLGGVAPPDDHLAGLLYLIKVRLVAIQDFSSPPGSPGGVQQEAGGWELPAPGQPPFDDPPPDGPFGGDAAGDGEVEDAPAPAGGGLQLHQRASPFAPSCGFVRVGDLHCPLAPGVGGRDVLEARARSLEPCPSTPARLATLTGSGSSAPSPSIFLRREPSTPTCPGVVGAFLNIAPILLHGGSSCVLPPTPSHDDWFKDCVESELAFGAVVGRRPGTSDGCAQGCLAEAASSAGAASAPTSGTVELQSGDVAAVVASQPAVQDARVNEDASDAAECADAELPRPSLSSFIDDFRVPLSPPLLLESPIRRVSRAASPRRTSAAPVPRRSSRLAQSAHLREPKPEAQARKVLLKKWRPVRSPPAPPQAPNSNINDKFRRVFREPLSASKSEAMRELFPAAGRRVAGVVLDP
>L1-1_SBi_pol#LINE/L1 2992-6552  [Sorghum bicolor]
MSDNKFLFWNVRGLNSRASRVCVRDVVVLEAVSVVCLQETKVQLFSDVMLSELLGADFDYLILPSVGASGGILAAWRKDVWQAAQHNISSSCISVRLLPLAADXVHEFWLTTVYGPSDLALKESFLQELEGLATLCLGAWLICGDFNLIYQAQDKNNDRLNRRMMSRFRRSIDMLSIEELHLHGRRFTWSNERARPTMERIDRVFATVPWLEAHPFHYLHCRSTDASDHAPLVLVLSTEPWARPAFRFEAFWPKVEGFLEVVALAWHGAGAQGDMCRRIDAKLRAVANALKSWAATKVGSVRLQLAMARVVISELDVAQESRDLSPVELSLRADLKAMTLGLASLQRTIARQKSRCRFLSEGDANTRFFHLQACHRRRKNYLHPFEHEGVLFTTEEAKSXAVYDYYNAIFGSRFRRLHTIDLERLDLPRLDLSELAAEFTVDEISRAVFDTPQDRAPGPDGFTGRFYRATWSIIKDDICEAFRALWSQDWRSFYLINAASMVLLRKKEAALGLRDYRPISLMHSFSKLFSKALASRLSPFMDDLVHANQTAFIRGRRIHDNFRSVQLYCRWLHKGRWPCVLLKIDIAKAFDSVSWTFLLQVLERLGFPLAFRDWVSAMLSSASTKVVVNGRPGRRICHARGLRQGDPLSPLLFVLVMEVLSSLIREADRRGLLAPLPGGHFGHRLAVYADDVVLFLAPEASDFLCIKSVLELFAGASGLLTNVSKCLLSPIRCSDEQIAAVQAVFPCQLSPFPCRYLGAPLSLGRLSRAVEQHLVDAVARRIPTWKAGLITTAGRLTLAQSTLSAIPVHVSITCVLSPWAIRQIDKRRRAFLWAGTESVAAGKCKVAWISVCSPRIYGGLGLPDLRTLGFALRLRWEWQRRQPNAPAWSQLPSNDGSIVREMMAASTSVELGDGAHARFWTDRWLPEGRIQXFAPNLFKAIRRRSLSVSVRDAVAERAWVRHISGALTMHVLVEYVLLWERLETVVLQPGVPDRFVWRWSPDAVYSSSSAYKAFFHGLTLLPGARQLWKASVPPKVKFFAWLALRGRLWTSDRRHRHGLQGDASCALCDQEDETADHLLLGCVFAREVWHRLLSSFRLPLRPPAAPSSLVDWWLSSRGLLPRALRRGFDSVVLLVAWSIWKERNRRTFEGLRSSAIDVVRSIVQEGQLWVSAGFRALEAVVAHSLSE
>L1-1_VC_gag#LINE/L1 129-2147  [Volvox carteri]
MANGMAQRKRPRTTAPRTLGNGGTRKPTELPNAGRAKAAPKRINAFNVVTLDGHKYSSVLELETIDLVVHWPARSDRNDLMAQIYGPLGTAIRSTLGQHFSSTEFKWWGGPRIEKRLLYAAGAESNIAMDFSILVPKGGLAYLFEAYGERIRVSGVQLCPNEDPIEVELQNKNLHKVLPVQWEIKGVPTKLSVHGVAEFLARAYSTSHQPRTATEFLYLIPTAMADTWQLTLPRDHRGLPCEMPYEYYGWLGEQHQVGCLKAAKLSPNLEVNPYLMPRCPPPREELRKQQRRQREAAGHHTQQTRPADPSPPMPPMAAFSGPTRPATYPGPPGQAVEPQVSGLQAAATEGNAAEMVYPPPPPPPPPPPPMPMPLRAPREHNGGKRIGGNGGPALPTGPGSSRVPPSQPNNSGSGGSKPTAQPGGTDTVGPTGSTGWMLQGKKGKKTPIPDPPAVPREASQETLGTALHRAAGPGKPTAPTPSASKPAATDMDSEDEHTLAVPDLADEEMVAEQSEDDTPSAQQPLEAVARAPAREPKPRTGQAKQRLQHLSEEERKARNRAQTAKANEARRASAAAKREAAATSGKSAKPKKQQAKKKQQQATSEAPTGSDIEMQESDYEDATEAQVMEVCSPEEPQEESLTPTLQLQLPAGTQALASASPPEGDGPTNPPVQ
>L1-1_VC_pol#LINE/L1 2122-6819  [Volvox carteri]
MAQPTHPFSNMSCPRANNGTRQRGATRGHPLRIATHNVQGMTARHRPKVHAAVKLWAEMGLDVVCLQETHHTNAHDQGRLENELNLATQAAHTQGWKVAAYSWSDSPHKAGVLILVRRDLATNLEKPPPTPGVRGRFTSCVLRWGGHRIHICNIYGPTGTSAHVNPLRQQLFTTTLPATTKHAAENSDTMLVWAGDFNFVEDPGLDSTAGPGGRRGDGPTVDLLRAAGPTMVDSHRQLHPHSCDYTHFYRAPCVGASRLDRIYVDHGTMPYIAKTEIAVQTPSDHKPMVMHLLPCRPESKGPGNRRVRLAFTSHQDLAASMEAWITSQCATAPSAEDNPLGLIAWWPGFKRRLSTLALQLNKAAQHRKLRPGARAREVLPQVQLARQAVDAAPTAQQPLQQLVEAQAMLARAHREDCRKDAMEARTHWLRAGERPSPSLTAFLQAQAIDQQPAPVALQALSGRLVTNPAQLPQVVADFWKDVSKAPDFICPQARQAVLNSLTAANIKFPAEADEQLGAKKITATELRKALKKSAPGKAPGWDGIPADIYRKFWSAIGNTMAGLFTAIGTTGQVPAGFLEGIITVLYKKGDPKLPGNYRPITLLCSDYRLLAKVLANRLGPALGRVITPEQSAFLPKRLIGASVLFLRHLSHLLRKQNRQGLLAFLDFAKAYDTVDRGFLLAAMEAMGAGPQLCAWVRLLLSETRARAMVNGYKSRLVDMEAGVRQGCPLAPLLYLFVAQALQCWLRSQEVGIKLQPSDPNPVTACQYADDTEVALDGAESVPSFLQAMETFARASGQRLNLEKVELLWIGQQRQQQQQPAPAAGPQLTAPQQETIGGLKVVTTATALNLPIDNQVTPPQPDWTKRMGEAKRRMQRLSRFPLSAFGRATAASAYGLQTVTWHMEHGGLAPDRVLDEIERLTARLVDRQQGPDDPGRRLTGVPKELLIGHPSTGGFGLLPLRQHIQARHAVWAARFVIATLGLRTGNTRSDTGATDTDMQVGGGIHPWVRTLSAYLLLTNPAFQPWALTTASPTGPWLGTRDLPKDISRIVGALGHLPPPEDIGTNPLTPGDWCWATALWGNPLFPNAGGTDPTDRGRRPGLEYQYPGLATCRKLQTVGDLVRVWTLAESSDLATLPRTVWLEWARTHLDPLTPISTRDKPVTRAALAALHSSINPAWLEAARTVETRRQQQQQQQQRGLTEPMAAATEGEEAVIPSPAPLLTSMQAMGMIAGRIGWRIPGMAEATPLARLTVRLATQLQCGPMEERRRRLVAEFVREATDPQGPSPPPPSEISLFRATQARVWSGVRWENENKETLWRLAVDGVALPGNTHLARMTPERCGCGGFGGAAGQPCSPRMHHFWECPVAQAVRAQIDRHLQSSQEAAVGGVTRKQLWLLLAPTGCEQAVWDIIALSALSAMEVGRCCLRAAGRRQERAGSQGPQNREHAQQVQVPGPRQRRITDFFIQADGAGPQTGPALNAPGDEDQTQERNTATGAVAATAGAAAAAPAATPLERACARAVVDFWARLRSFTALGTPRRGWDRVGPDHPILSVSEGALRCAEAVEIIA
>L1-1_XT_gag#LINE/L1 46-978 [Xenopus tropicalis]
MGKHTQRARSEAAARLEKYAHSPSQVPPDENSCQSSVSEPPGPPPDMDPPQPTMGDLLEAIKESRAATTSQLEGIKIDLSLLRQDLQNLRERTTAVETRVSSLEDTVNPLHNTMPSVKQQIQALMDKTEDLENRLRRSNVRIVGLPEKVEGQHPEAFISKWLQDTLGTDIFSSIFVVERAHRVPPRPPPPGAPPRPFLLKLLNFRDRDAALRAARLKGPILYNGSTISLYPDFSPAIQKKRASFTAVKRRLREANISYSILYPAKLRIQDGTTTQFFDSPVDADDWLNRKGQQHPAPIGRRSPPNSPRQH
>L1-1_XT_pol#LINE/L1 1780-5517 [Xenopus tropicalis]
MASYSIVSWNIRGLNSKFKRSLMWSYLKRYPPSILLLQETHLVGQKVLALKKPWVGWSFHASFSTHSRGVSILIRKNIPFELLHLVTDHYGRYVIMACLIANKPITIVNVYVPPPFNVTVLEHIAKKLADLPPAPTCILGDMNQVMDLFWDRLHPTSSGPTNLTQWANSLGLTDAWRWKHPDDKVYSCHSQPHKSFSRIDLALTSPDILPLIEHASYLPQSLSDHSPLQLIFRWLPSPPDKLWRLSPLWLKHPDILEPHIEAYQEYWDINSGSASQGMVWDASKAAARGSLMTSVAQVRTAAKEAVATAENTLTQAQQQHYNNPSVNTYEEVRRAEAALARESTAIAKKALLYSSQRIFDKGDKNSKTLAFLAKQQQPSTAVPRIQSQEGRMIYEPHLIAETFAKYYENLYNSTTSCTIPQLNSYLDSSAIPTISPAERAWLDLPITVXEIERAIQSLPSNKTPGLDGLPPDWYKSLNKIIAPRLLETFQAAWDSQSLPPSFHEALIVVIPKSGRDPTLCSSYRPISLINTDAKILAKILATRLTRAIQDLIHPDQSGFMPGRATDFNLRRLFTNLQLPHTNKGSRVVASLDSEKAFDSVEWNYLWEVLHRFGLGTKFIQWVKLLYKSPVAKVRVNNFISPPFQLRRGTRQGCPLSPILFALAIEPLAITIRECASIKGLQFANITEKVSLFADDILIYLADPLESLSTMLTVVQEFGKYSGLRINWEKSQLFSIDPTPHIPPPQQTQLKWVTSFKYLGIWIHPDPQLFLQLNLDPIMDSLSQVLKTWAKLPLTLWGRVNIIKMIYLPKFLYIFHNTPFTIPRSFFKKLNRTITSFIWANGTPRISWERLTATVENGGLALPHFYFYYLASQIYYIHWCLAPNPYNPNTQLQASILHSIEGLSTYPYRHHTDMTNLPHTLLTPHKAWTTALKTMHHPWPLLSPQLPLWANSLLPDLQELQDYTYWPRLGFKKLGDLTLGPQFPTYQDLQDRALGKQIQFYRYLQLRHAFHAQFHTLPPTITTVTLEDILLSPSPAKLLSRLYKEIMTTIKPPFDRAYRLWTQDIPELAQDQWEEATENAYNFLIPIKDRLIQYKFLHQTYITPLKLMRFGRRQDDLCPRCKSPGANFFHMIWSCPPIHEFWSKIMETLASELGTPQIVDPITCLLGVIDGILSTNVARVRLRTLMFYAKKTVIMHWMGDTLPSQTFWRRLVDGALPLIKLTYETRGAYDKFDKIWENWYNQDNLDT
>L1-1a_Cis_gag#LINE/L1 1096-2472  [Ciona savignyi]
MNDGIPEIEAKLERSIVFQLTGTVEHMSVSSFMELFADGAPMADMSQIVEGVIMDNFKDCTFLVTLKEQSGEVVIPEKREIIHYFNTNDINFTTDKGSTMSLKAELPQGESEVVSLHPVTADTCKEKLEAMINNQNWGKIKNINYGTHRNFNKIKNGWVNITLTETNIKNIPPLIKIGGRTITVTRPGEEHMALCRYCKQRGHTQNKCPKKGFCVECKAHGHTSRNCRTSYQEPRPRTVFHSSCNTAQLVRTPNRNANQSQWQTAKKLPEKQMHNTRNAQIKLTNRFGILQESQHSEIEDDLECLRKLVGSMDESIFMPEDFPDITTANSTPKNDNTNLPKRRRRRTKKRGSTSNPSSQEKKIVYYNQIQSTSNQIKREVKQTETVNLSDSSSENEASTINDIPEITLGPRLPSAVESVYRTPENTAPFPPIPNRTLTDITKFYTAEGLQSPKRPRSGT
>L1-1a_Cis_pol#LINE/L1 2562-6080  L1-1b_Cis close enough to ignore. [Ciona savignyi]
MEPEKVLGNNLKIGSLNTNGILNKIKKIIYYMESNKIDILLIQETHVFTKDMMSKFKAQSNIEIFVNAPEHPIRSFRQGTAILVKKHLLPMYKIHHNIIFENRVQKLNLQYKHNDINIYNLYLKSGQTXKNLIAREQMIYDLKDKLGDVNETIDLLIGDFNMVSNEIDVKANYDKRKKRDRIALQRLQNGNNFQDAFRVIHKQTIEFTRITKTSATRIDRIYVNRLAKNKTFALNHIRNYFSDHNNCPVITLKINSNRKWGLSFYKINNSILQHNDIIENLNTMWINWQKQKTKYMNSATWWEYGKKLIANEVRYFSQNINHAERKRYLTRVLEIKELEKQYQSQNIVTKITRLKENINKYERKINEGAIIRSKINIIEDEEKPTKEFYRYEEAKGNRDTIYNIYNQMGELTKNQNQTLNATHAFYQDLWTSAEINIDYIDEYLYFLDPIEYDQLDLKNMTQPINHKEIHECILEINDNSTPGCDGLTSKIYKQLWEVIKYDMEELYNNIYLKGIMPETMRTAIVKLIYKKGDKKDIKNWRPISLLNTDYKILSKIIAKRLGIIINKIISPNQKCAIPGRSINNSLENINACIEAAKYFNKNLTILAIDFEKAFDRVNYTYLFKILTKLNIPEYIIKWIKIIYNKIQSKIEINGAFTDNINITRGIRQGCPCSMILFLIGVEVLTRKIEANKNIKGFKLNHIELKTEQYADDLSILISDNMSLKETINEIKLFEKASGQKMNASKTQIITNDSLINNVINEHLPNECIKEKIKILGVYFSLNRECITENTEKARRVIKALYWKNLKRKLTLKGRIIIINALFMPQLLTIGRHMILPKQFINEINNYMYKFIWFPQKIDRIARKKLIALPIDGGLNAPDIILKLKAVRATRLYEIRKLEKLQTISQEWTRFNLASTIKLINEQLYTNSALNATEPNKFYKEIRQTIYTLRRKDFPWESNKLKPIYVELIKDKAKATIIRENNEIIKWSQITLNDKLTKQHFNNVERDRNYKIAHNAYHFGDWYRDKIGTQYQNGKLLIRNCKFCGNRSDNIKHILTKCQLTEIIINEIEVLTNNACKQKTQITKSIILYNQTKNNATPNLLVTKAINIFKAEIIRKKHQLDFGNKYIESKDEFTRRILWIINTKIKNILLRESTLRGKQETYELYDLNETYVI
>L1-2_CR_pol#LINE/L1 639-4955  [Chlamydomonas reinhardtii]
MRRPKQAAPGPRPLRVGSHNVRGLRKRVPHLGCSRLHALLSCWERQRLDVVCLQETHVLDSDIDLVTADLAAAAQRLHAREWTAWWAPAQKPEGRRVTGGTAILIRSSLLQQGAMVLAGGAAAVSVAAGAWAGRGVSLQLQWGGHTFTLTSAYFPLASTAQQAFIREWVGLRASGSGEHLLAADFNFVADVALDTVTGRARSDGPAAAALAAACPGLIDVLRRRHPARRVCTFFHPHGASRLDRILCSGGLEPQVLECGVAAGVPSDHMLVTVALAASPEAAPPARSLPRAHLGFRDFKDLDRDYRAWLGTALAARPTDPVELLEWWPALKRAAATSANRLSREAVTRRVAASQREAAALEAAAAAAAAVEAGGDVQVAAQAAVRARCTAAEAAVAAAAGAARRTRHAWLRGGEKPCPLLTRMLRPAGGPRVIAKLKQPDGTTTSDPTVMGQVMARYWRDVSAAPPPAPDARTQVLDALQQHGRRCTAEEADQLGRVAVSAAEVRAALAAAPAGRAAGPDGIPVELYQHYDSDFAPVLADVFTAVGEGAGVPDGLLDGVWSFFFKSGDPTEPSNYRPITLTDTDYRTLARVLCLRLQPVFGRVIDPEQTAFLTDRRIADNVLLLQLTPGLLKAAKKAPAVAAFLDFYKAYDTVDRSFLLACLERMGVGAGFLTWVSRLLTDTRGAALVNGRVSGWVPLMAGVRQGCPLAPLLYLAVAQALLSWLRSRGHGVLANLASVLASQYADDCTPFLEGFQAVPGFLADMDVFRRASGQRLNMTKVELMVMGTVGGAGALPAGMAGPPLPPGWRVVPAAKSLGVHYGDWGACSPPVTFEAVMGVLSKIARMPVSMFGRAAAASAYALGKVLYHLEFAGLPQLYVVDRLLARVAAVVDRRLSPAQFDANPHARPAGLSIELMQLPPAVGGAGLLPLVPHVKARQAGLAVRCVLGVCGLLPYVPPWTRVAAAWLRQVHPAATPLRLLVRGAADRVLNKPLTPAGKPFARLLKAMTALPAVTLVAPPEPGAWVSHVPLWANPALCEDGRTWEVAFADLFALPGLACVGQLVAAHDGLNELRQALTRPWAEGSRSGEACADMYVTAVWRRVLHWSTRARLPSPLPGPASPQEAADRFAAAVALLPAGWAAAARAAQLARGPAAALPLPVADVVSATAESVQRVVRGLGWLQCGGPPILLTAYTVKAGTVLQMAPQLAALKAKHLQYVCDAGVSGVGAALAAGAFVCTLARLWSLKWENHHKEALWRVAANACWAFPRHASERARGVTVDPCWACGVDMQDGDRRHWFWDCTVALSLRESMGMAMGFLPEEALSAFSREELWLVRPPAGLAPPVWDVVCLAAMSALDFGRQRVVMAGLAARAKLPSARVLSIGLAVVADFWGRLQTFVTLGIRPKGWDAVPFAHPFISRAVGDGMVLRLPYDADSPPPSP
>L1-2_Cis_gag#LINE/L1 693-2096   [Ciona savignyi]
MMRDNVPEIEANLERSLVFQLIGNVEHMSVSSFMELFADGAPLADMSSMVDGVILDNFKDCTFIVTLKEKNDDVDIPQRKEVIKYFENNDINFTTEKGSTMSIKAELPQGGSEVVSLHPVPADTDRKKLEALITGQKWGKIKNINYGTHRNFNKIKNGWVNITLTETQXQNIPQLIKIAGRTITVTRPGEEHMALCRYCKVRGHIQNKCPKKGFCGECKTHGHTSRNCRGNVQAPRPRTVFHSDCNTAELMNTPKRNNIGQXQPWHTVERYVEKRYQNTRNAEIKLTNRFGLLENWPEFYIENEMRQEGPNQYDESIFNLEDFPNMTAVNSTPKKPLTPLSQRKAKGGKKNKXPNRQEXHKTDQPIENPMDNTQENKQGKATLKQQPTKVHHLSDSSSDTNEPTEPMTMYNETKQAIPIHRKESNVESIYGTPDNANDIPTIRRSVIERSDIFTSEATSSPKRKRTDS
>L1-2_Cis_pol#LINE/L1 2161-5676  [Ciona savignyi]
MEPNPEMVNNLKIGSLNTNGLLNKIKKIIYYMESNKIDILLIQETHVLTQEMISKFKSQSNIEIFANAPEHRITSFRQGTAIFVKKHILSMYKIHHDILFENRVQKLNLKYKHNEINLYNIYLKAGQTYINLVNREQMIYELKDKIENENETIDLLVGDFNMVSNEIDVKANYDKRKNRDRIALKRLQGGLNFHDAFRLINKQKIEFTRITKTSATRLDRIYVNNQAKNKVISFSHIRNYISDHNNCPVITLKINSNRKWGLSFYKINNSILKHYDLIENISIMWNNWQHQKTKYMNTSLWWENGKKLITNEVRNYSQSITQAERKRYITKVQELNDLENRVQSEKIISKILRLKENINQYERKINEGAIIRSKIKIIEDEEKPTKEFFKYEETKCNRDSIYSIYNKTGSLTENKEQTLIAIENFYRDLWTSEEINVNDIDEYVSIIEPLTFDQYQLKEMSRPINHKEIYNCLIESNTNSTPGCDGLTIKIYRLLWDNIKYDMEELYNNIYLKGTMPETMRTAIIKLIYKKGDKKDIRNWRPISLLNTDYKILSKIIANRLNIVIPKIISRDQKCAIRGRSINDNLYNVKACIDAAKQFNKNLTIIAIDFEKAFDRVNYSYXFKILSKLNIPKYLINWLRIIYNNIQSKIELNGAFTKNIRITRGIRQGCPCSMLLFLIGVEILNRKININKNITGFKLNKIELKLEQYADDLSIIISNAQSLKEVIRELKTFEKASGQIMNTSKTQIITNDISIQNILNEDFPSDCXKEKIKILGVYFSLSIDCIQDNIAKSRRVINTLYWKNLKRKLTLKGRIMIINSLFIPQLITIGRHMLXPKHFINEINNYIYKFIWYPFKIDRIARKKLIAHPKDGGLFAPNVNLKLKAVRATRLYDLXKLEKIETIAQEWTRYNLGSTIKVINNKLYTNSAINATEPNAFFTDIRKTIYQLRRTDFQWESNKLKPIYLELLKNVAQTTVICENSEIIKWPQITLSEKRTKSHFTNLERDRNYKIAHNAYHFGDWYRDKIGMQYRNGKVLIRNCKFCGNETDNIRHILTECQLTEIMINDIEEITNEACKQNTQITKSVILYNQTINNATPNLFVTKVINIFKSEIIKKKHQLDFANKYIGSNHDFTRKMLWIINTKIKNILRRECTLKGKQDTYELYDLKHNYVF
>L1-2_ME_gag#LINE/L1 726-1430  [Macropus eugenii]
SQAQRALLEELKKDFKSQIREIEEKLANDFKSMKKEITEEFKRKIGQMEKEVQKLTGENNSLKGTIGQMEKEMQKLTEENNLIKIRIGQVEANDSMRHQESVKQNLKNEKIEENVKYLIGKTTDLENRSRRENLRIIGLPESHDEKKSLDNIFQEIIKENCPXVLDPEGKIVIERIHRSPPERDPKLKTPRNIVAKFQNYQVKEKILQAARKKQFKYRGDTVRITQDLAASTLKD
>L1-2_Mad_gag#LINE/L1 6-1360 via tfasty with L1-1_Mad_gag, 1 frameshift. [Malus x domestica]
MSYRHLSRDFKVEQKVFILEVEDKSFGERIRITERTRIRGYQISFDLGCAAWLVDQVKEAIVKGGQSFFRKYRGHNYQFWVERFHNKNGDFLVISKSEKEGFVRNILVPKGFNFFGWRSLEDLLSEILRGGKRAGATQRKVKRVGKEFVSSQTGAGPQVSYRDAVLGGKTATIVAPIRNAKEEIWMKKIWNKRDISKESYSWGSVVVCERQVVHQPWREVEASLRNLLGMEIRLSPFQCNKALFVCQNEEEATKIAQLGTLAMIKLPDVVLSGWWDSINSNHRKAVSYGGWVALEGLPPHLWTNNFFQKIGEACGGLVEIDRRTANFGFLLEAKLKLKPNDTGFIPEFVDVADGESVFRVKIRQLSPAKRPNLSAEDGGATKSPNGSLKKDLKIQRLTGATLPAKADMQQSVPSPGTRVSFRIGEFECPVTVGADRKYGLNRLLTEDARHEE
>L1-2_NV_gag#LINE/L1 100-978 [Nematostella vectensis]
MKKRKERGSSSSSASTVSPQPKKFMEVFEKETMAENGEVSKSTEKQPVTLESIWLVLLEVQANTQGLKEEVGDLKRAFSVQEEQIKDLEKKSVALDTRVSTLGKLVVRVEENAAKEEYIEKLEVKLDSLEQYTRKNSIEIAGVPSGTFSCEEVVINMARMLKVDIKTEDIEISHRLKKRKQEEFSPIIAKFICHKKKAAFLKARKGLKDVRYWDLDLVGLEKPACIDAKLYGRIFINENLTPARRRILGRALAMRKKKMLFSAWSIDGKIFIKRSEQGMVEKVESLQALDTA
>L1-2_NV_pol#LINE/L1 1523-5344 [Nematostella vectensis]
MGNDFEFKILSLNVRGLGEYKKCRKMFHWINGHGGDSGVSFLQETHSTKEVENNWKNRYRGEIAFAHGNSKSRGVAILFGRKLNYQLQDTIADSNGRFLIIRCKIQNGDFLLINSYAPNDEASQVLLFKEIQIKLQSQAYTGSPNIVWGGDFNFVFDLELEAVFGNPKLKHRSIAAVEIMLDEYNLCDIWRLRNPTIKRYTWRGSAQGKRSSRGNYIHRRLDYLFVSDDLQSSIDRCDIIPAPSTDHSAVTVEIKADGNVRRGPSFWKFNNSLLENSGYVNELTKCIDIWKQELVEEGIDNSQLKWEVMKYKIRKFSISFSKTLARKRRENYRELEEELKVIENIVGWTENDELSKRHEIALRNLDELSNYITEGLIIRSKAEWHELGEKNTKYFLSLERRNKSKTHIKKNVEDGKEISGQADILQNLQSYFSRLYERKSVKTEEECLAFLSELNIPRLQAPHRDKCEGLLSVTECFNSLNQMGASKTPGVDGLTKEFYIAFWSALGTDLVKSLNHGFTQGRLSTTQRQMIVTLLEKPNKDTRSLNAWRPISLINVDSKICSKVLCNRLVDTLPSLIHTDQAAFVKGRTIDEPIRIIEDVMNYVKNRNESYIMFAADFEKAFDSIEHSFIYATLRQFGFGENFIRWIQVLLTDNVSSILNNGHATTFFQLGRGTKQGDPVSPYLFILVLEVLAIMVRSSPEVKGLKIGKSEIKMTMFADDTTLFLKDMNSLEKLLELLRIFQSYSSLKINLTKSEAGWLGAKNKDRKRQGIKWVDLHQKGITILGIYFSYNERLYDENNFKRNFERFKSVLAVWKLRTLTLYGRIHVLKSLALSKLYYVCSKLSVRGDFIKQVDTALKDFIWNAKKPKVKYTTIIGEYDDGGLRAPDFFASFRASRVTFALKLSNEEERTYKVLPRYLLKVIGGVGTIRDNFDINRLPDDISGYYKEVFGIWAELFSNPINESDLEDEVLWNNKYIKIGEKSVFFRSFFECGIRTVRDLCNEVGRFEWQICLKKGVPGTGYFNWLSLCNAIPKVWKDKLRDNPGLVGQSKPAARLLRLGNERYEIGKFKAKQVYNHIVRMKFKPPTAQLNILQRIGGSPESIDWRQVYRRIYTIARDTYSRSFQYKILNNCLFMNKDLFRFGLVDSPSCSYCFSHLETVDHIFIECTKTRNLYLDIQKWLSAFKVQLPHLCIKDIILGVENENAAVNSVILNYKLLVYKRRESHKLPNLYSFQLFLRDIEKVERRASKLSNKPLQHLKKWELIIHALSSTGIM
>L1-2_PTr_gag#LINE/L1 163-2316  [Populus trichocarpa]
MASNPKLQTLKANTTHSITKQPTNHHQNIQNTASLTQVRFLKSHESTNNQKSLSNSHLDPKQQPPPKHNRNIPSPKTQNNHSFNISVPQIYFEGFPIWADYHRIKASFNKFGSVLKLYVSRRVNKSGSLFGFVTIASNFSDKVLLESVNDIWFEYHRLKANFARHYKKIPRENKAPDRSKPKTTIRVPISERDVRSYKEVLSEGKAEQILLPVASGPKDYFEKLSLDIEEEDYAWLKRCLLGKIKKGSNYSSIRFGLIQHDIDFAGLRFLGASQVLVIFDNRDILMESWRKNNKCWDVFFEEVRPWVETDTTLNRMAWITITNLPIIGWNCRCLTKILERSGQMIGYDKTTLKHFELSQLRILIGTQLDKVNKVIVLQLNNQTYQVKIEEMDQLHYPIAGSISYTMDDFQTSLEQGDEDDEEDSVDVADGVDTDEDRAGVSPSVTRTLGGGSSGWENSDLAQDGDKLSTSDDSSLIIFNALHLDVVQDQHVASSLERFPEIMAYNLSFSDSSYIKSSPIPNALTVYTGRGTPILREDARNPAAALGLDSLVLAQIXSPVYGSGSQSPSDVLSISFGSNNDLALQSTYNPQAVVILEPQHMNHPVILHSDANTKESATALSAKTRRKLRRTKMITADGSLNETVNKSEMDTEDSTIQRCNRRNLLAHGENNKPSEGDEVCLMLEIGEALQIEKPHNLDDFTSYINQQRRKEKADWEASQ
>L1-2_PTr_pol#LINE/L1 2366-6040  [Populus trichocarpa]
MQILSWNSCGLGLARKKRTVSKLIRDFDIEVCFLFETKLQSYSDRLVFQLWSVSNVSWFGNEAEGTKGGILAMWDNSKFAVSSVEYGHGWIGLFGQNVLTGFSGAVVGVYAPCNQADRLLLWKDLRILKAAFECPWFLAGDFNETMLRSDRSSGFINKVGSTAFRLFIDDCNLIEYNMSEGLYTWFRGGSMSKLDRIFSSPCCHLQFPLLSLRRLPRGFSDHCPLILGVSPAEKGWIPFKFMDCWLHHPNFKDIVKGIWDEACNEFSGQFKLIKKLSFMATRLRQWNRVGFGHQETALASIQSNISAIEQKSEYGQLSTAEQNSLDSLIKKQWQCNLHIESMWRQKSRQIWCRLGDRNTRFFHLVANFRRAKNHLLKVVHNGSVVEGLPVIKDAAVSFFSNLFRSPDRFRIGLGPVGFKTLSASSSASLERDITLEELKQSVWDCDGSKSPGPDGFNFKFYRLAWNFIADDLLDLAKNFFKTGRLPKGVNHAYVHLIPKIASPVGFKDFRPISLIHGIYKIMAKVLSSRLKAVMHDLISENQTAFLAGRQIIDGFLVANEAVHSLKRYRVPSLIFKVDFHKAFDSVQWDYLEQVMRHMGFGEKWINWINTCISTAKLSVLINGSPSKEFLMGRGIRQGDPLSPFLFLIAAEGLSVLFQRAASNDLFKGIPFGDSFCLSHLQYADDTLIFMPANLHMVKTVKRILLWFAICSGLHINFHKSSLIGINVGEDTCASMAYSVFCRFDSLPCSYLGMPLGSNPKRLSTWKPIIENFRRKLSMWRGRMLSMAGRICLIKSVLSSLPVYYMSSFLMPKGVCNILTSIQRRFLWSGVAKQKKICKVQWRIVVKARKEGGLGLGSLMSKNISMLFKWIWRLSLPDHALWKQVTTHFYSPTFENGIPKLHGHISPFWKDVLSILDPNSVIGLVLRENIKFMIGDGSSILFWSDVWIGSNALRSIFPRLYQISTFRNGLVNEMGQWVNDQWRWNLVWRRNLLSYEEQQYHHLLSMLEPTIIRQGKDDKLIWPCNSDGSFSVKSCCTLIDNTSSANDRVFEANVWIKGAPPKVQVFLWLAVQDKVSTRAFLHQRTVLSATQASCVFCSSDLETSEHLFIHCNFSRSVWMKVLDWWGIQCCLPRTLDSLLLQWPEMVHGKFQRSAWRLISSSTIWGIWLLRNKIVFEEGTINLFDCFSTILHRVAIWLHTQDSNFTYTGNDLLRSSDGIKLWCNKKS
>L1-2_SBi_pol#LINE/L1 155-3664 via tfasty with SHALINE16_MT_pol, 13 frameshifts and 6 stopcodons. Not the best sequence. [Sorghum bicolor]
MTHLAWNCRGSGGSLRSSTMAHLSRLLVSTKAQVCFISETRNSTISKTSITNRFNLNDAFVVPSQGQSGGLWLLWKDEVDVTVIDHNHHFIFALCTNKSTNQHYGLVCIYGDPHHRTTNAIWEQVLNFVAPNSNLPMLCMGDLNELMHANEKLGPTSADVNRINDFCAYVKQCGFIDLGYSGPAYTWTNKRFSSVPTYERLDRCLGNAEWCMEYPTTTIYHLPMMYSDHAPILAVLNSQRTRTNKPFRFENWWLMEKEYHDIAKQSWQRSSNRDFSQKTKYLAADLRKWRKKKPRKMTCLPDxKPNSRSTKPATFSAGPHPPATLHDKHQDLMAKEETYHIQRAKKNWAIAGDRNTSFFHQAIVKRNRKNRITHLINPDGSHSTTPDNLLTLLSTISLIFSPLRTLTSTCRxHPPHYSSLSNLTLIMPLTRACRRRSSHQRxNFQVYLLHSYLNEIHDIIKQMRSNAAPGPDGLNAAFYKSAWQWTKEDIYKVVTDFYSHAHMPSDLNQTFITLSLKNxSSVPQDFRPISLCNVIYKIISKSLANRIKIILPNYISQAQSAFVANRHISSNIIIMQEIIHSFNLNTWKDHSFILKIDLAKAFDRLEWNFISAALRRLGLNDHFINLIHACISSPTFAVLVNDEPSDTFTSQRGLRQGCPLSPYLFVIAINELSIRLQQALQDSNLHGISLGRQCPRIHSLLFADDLSFVESRRSRSTGNKEHPHDFCRQSGQTPNLPKSFIYFSKNVPTTIKNQIKGVFPVPDLQPNTMHLGHPMIFSHRDKNRAYNFISNKFFAKFGSLKANNLNHAGRLIYIKSVLSSIPIYYMSTVLFSKAFIEKINSIIRRFWWAGVHGRKSDQSHCLSSWDDICKPTEQGGLGIRDMELVNQSLIIHSAWNIATNKNPFLSDILKAKYYPSASFWNATDNGPRSIYWSSILQVRHHLTSNAIYQIHDGNSSIWSQPWCPIWNNIHDHLTLPVVNLLCHAKVSDLWVQGTQTWNHQLLSTTFSDQAVHAIEATPVVTPTDNDILRWTPTKDGICTTKAAYSYLAHQQAHQLPSQWTQKHNxxCQQNPSKVWKSKSIPPILKTFAWRLIRRALATAERAGRYSIHIDKHCSYCGAIETDLHLFFKCNLPTQVWSTANPPFLTNNIPAEEDGVQLSLPFLITHNNTTDDIL
>L1-2_SP_pol#LINE/L1 46-2466 Fragment  [Strongylocentrotus purpuratus]
EDYFFSQNISSLSDDEKKICEGLLTXTECKQAVFAMQKNKTPGSDGITAEFYQVFWNEICDILVAAXNECYANEKMSDTQRKGXITLIYKKGDHRELKNWRPITLLNXDYKIIATVLAKRXQKVIGKIIHENQSGYIRGRLAACNVRLTKDIIEYMTRNGKNGALMMVDFSKAFDVIDVTFIKKCLSKFNFGPVFQKWVTILYTNISSSVIVNGWLSETFSVLRGIRQGCPLSALLFVMAAELMANKVRENKEIKGLDIDDKGIDLKLLQYADDTLFYVSDINSFENILIELEVFGKVAGPKLNXEKTVLIWIGTACQRWSLSCFGLRWTDEPVKYLGHYIAPDLQCALKIDWENKLEKMQKLLDNWRKRNLTLFGRLTIIKSLAISQVIHLMIVDTIPSTFLIKLNSLIFKFLWKSKIEKVKTFRLKWLGMFLDNTTGNWKDMCKHWFDCLGGLHLLLNCNYTDYTLNLLKLRNVPHFYIEILHAWYLIKKYTSAECQTQKHVDENILWYNQDIVFEKKMLFYEDWYKSGIIYLKDIFKNGTFVSVNELFIRLKTRRSKQFLIFDYTKLQKSIPKIWINDKHRVPLVFKDHNFSIPHFVFGKSVKPVSHLSSKQCYNMISFEQIKINKCCLYWENVLQKDVXWSSVFNRNLIGIKEFRLREFNFKLLYNMLPVRKNLFKWGLSYDDLCLKCKKTEDVLHAFISCKANETFFEYLKDLVLRAFNLXIEIDIVLLLKMNLQTEIDLIMTIAFWSIYKMIIFRNKYGYDNRDLSLIYLFKREMTNRIEINEHLKVQNMKFPANLLSYI
>L1-2_VC_gag#LINE/L1 122-2182  [Volvox carteri]
MSQRRPAVAVSRGNVQNGRQPTSAARPQSIPTKKIKAVSGFYGTNEGLAIYRATLELEPIVVTVRWPAGSDTGDIIAQIYGPLGLQILATIGQIFRSNQEFNRWGGPRIQKRLLYPMGRERHIVMELSILVPKGGLAALTAARRIVNGRLRVPGVQLTPNMEPMEVELLVKNQQQAKPIVWEVRGVPVGLSCQGTADFLTRAYRADPSPQDVTEFSLLAPTTMADTWRLELTSNRGLPRELPFEYGEPSEACHQKGTLQAIRKTPPEGEPFLMPQPPPRAALAQQQRGDGAATSTRPGHSGQVTGVQGRLTRFLSPMDFDAIQRDRGHCSGAAEGGPAGVNPLGPPSGPKPRRAVDDGSGLNGVRGGKGDNSGSGPSIPPQGSSEGDAETSWTVMGRKGRKTPATAAKAAPAETNPFLVLAELRGEEDAPTDVPAPMGGNTPMATQQPGDPAAATTSPAANPNGISSTPTAMAVEGAPAAAALPGAPEAAALDPTPPPTVNPNGISSAPTATAVEGAPATAALPGAPEAVALDLTPPSAAPDLHKGKACKPRQTQGIKKIRRPDLTGEARRTFFLAQTAAARAARKQSAELAQRTKDQKRLIHKTSAAERRSELIQSARKQKAKDAEATQGTQASGRELGTAAAEGDDTIMEAESMGSPSQSLILHLPTASQPGFKDQPTATPTQLC
>L1-2_VC_pol#LINE/L1 2185-7072 via tfasty with L1-2_CR_pol, 2 frameshifts and 1 stopcodon. [Volvox carteri]
MEATTTIKRQQGAMQGRPLRIATQNMQGLLAKHKDKIHAAAKQWIEMGLDVICLQETHHTNAHHQSLFERELSMAAATAHSQGWRVVASSWSNSIHTGGVLTLVRQGLTATVETKPNKPSVQGRLTSCLLRWGGHCIEVCNIYVPTGTTHRAAALRQELISNILAATATQADTNNDTTLIWAGDFNFVENPALDSTAGEDGRRGDGPIAEMLRTAGPAMMDSHRQLHPLRHDYTHLYRAPRPGGSRLDRIYVNQAVMPYVARTEIIQHTPSDHQPMVLHLLPRRVEQRGPGIRRVRMAFTAHEDLATSLEAWITDQCAAAPSVEDNPAGLIEWWPAFKRRLATRAHQLNKTAQHRRLRPGARVQAALPAVQQARQRVDTDPGAQQPLQQLVDAQAALARAHREDCSKEAMEARIHWLRAGERPSPAMTAFIQAQSADQQPAPVALQAQSGRLVTNPSQLPQVVADFWSEVSRAPNYICPQAQQEVLNSLAAANISLPAEADEQLGSRTITATELRKALKKSQPGKAPGWDGIPADIYRKFWSAIGTTMAGLLTAIGLTGQVPKGFLEGVLTVIYKKGDPKLPGNYRPITLLCSDYRLLTKVLANRLGPALGQVITPEQSAFLPRRLIGASVLFLRHLSHLLRKQNRRGLLAFLDFAKAYDTVDRGFLLAAMETMGAGPQLCAWVRLLLSETRARAMVNGYKSKLVNMEAGVRQGCPLAPLLYLFVAQALQCWLRSQDVGIKLQPADSQPVTACQYADDTEVALQGEDSVPSFLQAMDTFARASGQRLNLDKVELLWIGQLNQQQAQPATQAGPQSAAPQQESIGGLKVVTTATALNLPIDNQPSPPQPDWMKRLGEAKRRLQRLSRFPLSAFGRATAASVYGMQTVTWHMEHGGPPPNRTLDEIERLTARLVDRQQGPEDPGRRLTGVPKDLLTGHPSAGGFGLLPLQQHIQARHAVWAVRFIIAALGLSNASCGPGTGGAAGTTGGTGGHGRADGGLHPWVRTLSAYMLLTHPAFQPWALTTASQAGPRLGGSDLPTDISRIVGALGHLPPLRDIETSPLSPGPWCWATALWGNPLLPNTGEADPDSLNRRPGLETHFVGIATCRKLQTVGDLVRVWDLVVHTRVASLPRSTWPEWVRTHLDPSTPAPTRDRSATLAALKTLHGAINPAWLEAARAVETQQQQQPHRRHSCSHSRSQPQPQPQPQPQPPATAAATAAASAAATAAGTATTAANTTTATDTASAAAATAAATATDAAAxAATPTAAAREANGGGYGGSKHPQQHSGDGYDPKAGRMADPGGTTTVPLTRLTVRLATQLQCGATEEKRGRLMAAFVQEALDPQETAPSSSAETSRFRATQARLWSGVRWENENKETLWRLAVDGIPLPRQHAPGPHGAERCGCGGFGNASNQHCSPRMHHFWECPVAQAVREQIDRHIQPSQEAATGGITRKQLWLVQAPTGCEQAPWDVIALAALSAMEVGRCCLRAAGRRLERAANPATEQPEQAQQIQAQGPQQRRITDFFHLANGVRPHEGPPLNAPVLEDQTQGPIAGPGTATAAATAAATAQHTAAATPLEYARARAVVDFWARLRSFTALNVPRRGWDGVGPHHPILSIVGGALRCAEAVDITT
>L1-2_XT_gag#LINE/L1 394-1347 via tfasty with L1-1_XT_gag, 2 frameshifts and 1 stopcodon. [Xenopus tropicalis]
MLALRPITILSTLQEVHHCNNNTTTLKMGKNTHKLRTEAASRLEKYARSNSQEAVSPSPPTPSVSPPLSAAPEKPQTADPPSAPTPQTEELKIDLSLIKQDIQNIRERTGALEERVGGLEDRTANLPHELNQVKLQLQTVMDRMDDLENRQRRSNIRVLGLPERSEGTQPEPFAEKWLKELLGQDIFSSQFVVERAHxVPLRPLPPGAPPRAFLIKLLNYRDRDAALREARRKGDLQYAGTRISLYPDYSSTVQKKRSSYMGVKRKLRDLGLEYAMLYPAKLKVMEGDRAHFFERPEQALEWLEQRPHNPRSPQREQR
>L1-2_XT_pol#LINE/L1 2128-5816 via tfasty with L1-1_XT_pol, 1 frameshift and 1 stopcodon. [Xenopus tropicalis]
VLSWNVRGINDKVKRYxTLLESQGPDLILMQETHLVGQRVRALQRKWASAVYHADFSTYSRGVAILVRKSLNFHFEALVSDRGGRYIILKGQIAGITYMIVNVYLPPPADIQILNEILQKVAALGNFPTLWMGDFNLVMDSAMDRLHPSTHDTRMFANWAEATGLVDIWKWKRKQYSCYTVASSAMSRIDMCLGLRDILPLVTEIEFLSRMCSDHAPLLLSLNRSNSNSSGHWRLPPKWIVNPKVEEWVFPQLTQYWDINQGTAEAHVVWDAGKAFIRGTYISLIKSVRQEYDLALSLARDALAKAETDLTLAQSDETKLGMQTAQRDIDLRLTEKYSQRELYRTAAWYDKGDKNGKLLALLAKGAIPRTVIRSVMDGKNELPNPAQVTEHFWQYFKLTYQVPLDRSMQGLNEYLNGIDFPEVPPDLARQLDKDITVDEVKEAINAFPSGKTPGPDGIPIEWYKKYVDFLSPKLAELFNGTTQSKPLPDSCYDAYVTLILKVGKPPDRCESYWPISLLNSDIKIFAKILSNRLKLVIEELIHPDQTGFMPSKTTDINIRRLFTNLTISHENAGNRIVVALDTAKAFDTVQWQYLWKVLTRYGFGPRYRNWVQLLYARPRAKILVNGRLTEDIPLERGTRQGCPLSPMLFALAIEPLAVRIRAHEPIEGLRIGNVTEKISLYADDMLLYLANSHQALANLLAVVAEFGQYSGLRINHSKSIIFPIDPLPPGTPDHISQLQVVTSFKYLGITVHKDLNMFEQLNLNPVVQALTNKVSIWQDLPLSLPGRVNIFKMIFLPKFLYALHNSPITPRMKWFNGVDKIIREFLWAGDHPRLNIKILQAPSSGGGLALPNLNFYFIAAQLVFAHWWMVPNVNNPAVVLEAAILGSYEALSKLPYRGTSPFYTTTPLMATVVQAFQKSQKLVHGSLETWSPRTPLWGNKQLPHFHALPDIARWAQLGIKTLGDILTGGECKTYDTLRQEVNPPPDMFFRFLQLRHAFSIQFPARPLRVAQTTMETYLHRLDLSKPLSWFYTILSASGPSPLQKAKIKWQSDIPALDNDMWSDALKQVTEISICMRDRYIQIKFLNRAYLTPYRLAKIYENVSDQCPKCRSDVGTLFHVFWSCPVIQRFWGEVLQFLNEKLAFPNIRSPELCLLGLTGDLHLHPYSRLCYLQLLYYAKKSILMHWKSLDPPPLQFWRKLVDDSLPSQKLTYLARGCPEKFNAVWGSWLDL
>L1-3_Cis_gag#LINE/L1  692-2095 [Ciona savignyi]
MMSSDYIPEIEGTLDRSVVFQLTGTVEHMSVSSFMELFAEGAPLAGISEIVESVILENFKDATFLVTLKNPSETQIVPKRQHIIDYFXNNQITFTTESGANMAIKADFPQGESEIVSLHPFPLDIDIKKLEDLIEKEQWGKLKHINYGTHRNFNKIKNGWLNVTLTETKVKNIPPLLKIAGRLITVTRPGEAHLPLCRYCKIRGHHQQSCPKKGFCTTCKTHGHLTRNCRNGTTYETRPRTVFYSETSTAPLLSTPSRNDKNVIINEWQTVQRVGKQHLIPTRHAPIRLTNHFGLLDADDMLQKALFGETSNDIVQDLFKPDDFPELIENHTSPTLSAPKSQRSPRRKKQKKGKTSPEPTKPDQQHQNPAHEEPNEQSKPETMETTNLSSSTNTSDLLLEEITDKTDQQFKSLLNRKPSQTESVYVTPDDNKTPTHPTAQNNDFNTELYNLRTNWNINSPKRPRPSDS
>L1-3_Cis_pol#LINE/L1  2189-5704 [Ciona savignyi]
MEIEQNLDKNLKIGSINTNGVIRKIKQIIYYMDSNKIDILLIQETHGLNEDHILNFETQYSIKFFLNAPDRNNKFYRQGTAFIIKKHILSIYEITHDTLFDNRIHRIKITYKHNEIHLYNVYMEAGNCHHNLLNRENMLNNLKNKLNETNVTIDLIMGDFNMVLDEIDVQRLFDKRKKRDRMALKRLLTEKSFNDAFRLKQKRKIEFTRITTTSATRLDRIYVNNLAKDKVTNFSHVRNYFSDHNNCPIITLKINSNSKWGNSFYKINNAILDYSDPIENVCALLENWKKQKRKYRNPLLWWDDCKKLITNDLIRYSQXINYAEKRRYINKVKELESLEKLTPVEQINEKIIRLKKNVERYESKINEGAIIRSKIKIIPNEEKPTKEFFRYEQTKGNRDTIHTVYNKHGQITNNPNETMQAIHNFYNDLWTTRGTNIQSLTNYLSIIQPIQIHESEIKEMTKPIHMKEIHEAITDMNDDSSPGIDGLTTKLYKKLWPYIKYELEELYNNIYLQGTMTKTMKTAIIKLIYKRGDKKDIKNWRPISLLNTDYKIISKIIAQRLNIILNRIISPNQKCGIPGRTMDDCLYNITACIEAAKHFNRNLTIIAIDFEKAFDRVNYTFIHEILNKLNVPTYIINWIKIIYNQIISKIEINGAFTDQINITRGIRQGCPCSMLLFLIGIEILTRKIQSNHNIKGFKLNKIELKTEQYADDLSIILSDATSINELMKELREFEIVSGQKINTNKTQAISNDPTIHHTINTEISNECIKDTIKILGLHISLKSDCVKENLAKSRRIINHLYHKHIKRKLTIKGRIMLINSLFVPQLINTGRHIIAPQSFLNDINRTLFKFIWYPFKIDRIARRKLIAPPHDGGLNAPDIKLKLQALRASRIFEITKLQQIESIXHEWTRFNLGSTMKVINSKLYTNSAPNATQPNFLHAEIRRTVRILEENDFAWESKKIKPIYIILLKEKSETTNILANNETMKWSRITLNEPPYKRFFTNKERDTNYKIAHNAYNFGDWFRDKIATQYYNGQLQIRNCKFCGEQTDNIKHILTECQITKLIMNDIEXXTTDCCEKPTKLTKSVILYNHTTENAHPNIFVTKVINIFKTEIIRKKLKLDIANQYIHNTYQFKQQTLWVINTKIKQIIQQELILRGKEDTYKIFGLKHTYVI
>L1-3_Mad_gag#LINE/L1 393-1700  [Malus x domestica]
MDKSPVALCPWGFLDFSATSSKLNTATGQLSGQLPKARTFAAIVTNGVESSVNLSQLPSPTVRGDVTYVKISEDLYQEQLRSCRTNLIGRLLLKKGTMPMKTELLKSALASLWKLHNSWKLVPLGKGYFDLHFSSEEDMRRVWGGGTCTLQFGLFRLSQWQPDFKPGDVLPQTHAQVWIKIYGLSQEYWHPRILMEIARGVGTPLQLDHATREKLYGYYARILVDVDLSADLPSTIMVEREQHGFSVDIIYENLPPTCGHCGVIGHNTNKCRHLKGNHSDGMHPDVEAHRRGRSPTRQVYRPKPSAKTVSPSGDTIHMERSPSVEIIHNKRSTGLNNDMGAPLCSSLEQRHAEQVNDFANQILMTVVNNELSVLADKVIDSSTDPHGHLETISDRQLLEVQPTNIINDSPSCNLNDTLSEEMRDVPTEEINIDQQC
>L1-3_Mad_pol#LINE/L1 1899-6038  [Malus x domestica]
MKLVYWNIRGIGNSDTRTELSNVCHSHHPDLVCISEPMVTFDSIPSAYWNSLGLSLLTVNNRGDLLPNIWVLYSTDYCSPTVISSSGQQVTFQTSFEGVLSQFTIVYAATTSTLRRVLWCDLLNIRSNTTMPWMAIGDFNAILGAHEQMGGHLPARTSCEDFRSTTELCDFTHMDTTGAFYTWTNGWSVRGYMERRLDRSLCDTRWLQSWPYTSCSALPRVVSDHNCLVFSASAIRLGGPRPFRFQSMWTLHSEFSGLVAKCWQSTVVYGCPMFVMLEKLKALKRCLRVWNSNVFGDVHRNVTFAKERLHNIQNSISSDGNSQEKFNEEVVAKTAVLDALQMQEAFWHDRARVKWLTEGDRNTAFFHAYARGRHSSSRIVTLLDGDNVLSSHTAIVDHVVNFYQSLYNSSFTPTGIEDVCGVIPPMVSEEENLSLSCLPSADEIRSVVFSMDPSSAPGPDGFPGSFYQSCWDIVGLDVIAFVQDFFKRGWLYPNANCNFVVLIPKVEGVATIAQYRPIALANFLFKIIPKILADRLGPIATRIISPQQTTFLKGRRISDCIGLVSEGFNFMDKKAFGGNVGIKVDIAKAFDTLNWDFLLHVLSSFGFSSIFVDWVRVLLQSARLSILVNGTPHGFFSCSRGVRQGDPLSPLLFCLAEEALSRGLSSLFSTGRITSISAPRGCCPPTHVLYADDLFIFCRGNVRSLRSLRNFLDKYGCASGQLVNASKSTFYLGSSSVHRKAHVSRHLGFRLGVVPFTYLGVPIFRGKPKRIHFQALVDKAKARLSGWKGKLLSMAGRFQLVQSVYQSLFLHSFSVYQLPSCVLKHLSACARNFIWSGDLSSRKLVTVDWSMVCGPKKEGGLGLRDLASLNLTALLSFGWDALQSYSLWGSFARQRFPLSPYRNQNIYLRSSVWHGLKRALPILNNNSRWIIGDGRSVSFWFDKWLDEPIISPSLSSVISPKVLPRVSDVIEAQSWSLPDYFSNLFPSIVQQILRLPLPLNVKDDKLIWEPSPTGKFSFSSGYHLIRRRHSDCAWAKVIWQHFIPPRLSILAWRLFHDKLPTEDALQRRGISLASICCLCHNSEESTAHLFFGCRISRQLWRWLACQFGTSLPLPDSLVAFWDVYVRKPFSKQLHNLWIFAGLSTISAIWKARNKFIFEGRPIYFHRLCMSINSAIVHGGKFIPGYSQGFDTRIISSLGIQPIPRKAPTILPVLWSPPWFPWVKLNTDGLSKGNPGPAACGGVFRNCHGRFLGGFCQRIGHCNSFFAELSAIIIGIEFAYQRGWHCLWLESDSSSVISALQSSDFDPPWPLHTQWSICLDRIRKMTFYASHIYREGNLVADNFANMGLSSPSLTWHDSPPMAVRAALFSDYVGLPGYRFSN
>L1-3_NV_gag#LINE/L1 2-814 [Nematostella vectensis]
MQVQIVSGQKNDGSVRVRKARKQMEDSHYEYDCNHALLVDKLELMNAKPDSTMLAIKQLQGMKKQIYTLKQENQELKKSLEFSQEEIITIKEEFKMADTKLEEMSSQVSLLEEKLAAERSRGVKLESFSRRNNLRFFGIPEGTNESWNGTEEAVRDFIHKNLKAGPKQAGDVSFERVHRTGTEDKSSPRPIIAKFSFFKDKEEVRSLAKNLAGTSFGIAEDYPKEIADVRKKPVPVLKDARANNHKAYIKFDKLFINDALYTGPEGYRAY
>L1-3_NV_pol#LINE/L1 1167-3682 via tfasty with L1SU_SP_pol, 1 frameshift and 1 stopcodon. (fragment; C-terminal 350 AA missing) [Nematostella vectensis]
MPFNITACSLNARGMNTTKKRRQIFRWLHNQKYRLICFQESYSSKSLEKIWAAEWGGPIFYSHGSNHSKSLMVLINPKLDSQISNSVTDKNGRYLILEITIEDSPFVLVNTYAPNDIKQQQLFFDTVKEKLRAFSGKQILWAGDHNCALTPLDKSGGTDVSKKHIVIDEIKRACASLDLVDIWRNQHQNIRQYTWHNRNLKIQCRLDYWLVSNSTASIMENSNILATSFSDHSAAIIELKSKDFVKRGRGFWKSNNLLLKDLKFIEELKDTITSQKQCYRTMKDSRLKWDMLKMDIRTFSVKYSKGKARERKDKERELQAEFNIVQQKLNEDMSDKRICVNCYETKHKLDLLARQKTKGTIIRSRAKWHEMGEKNTRYFLNLERRQHDSKYITKLNDDKSKEITDQKEIMNEIQDFYEKLYTSSQENEGVSTCSEYFFSTPPSKILNDSEQKLCEGRHLEDEFVQCFNAAFERGEMSISQKRGVITLIPKKTTNRFYLKNWRPITLLNVDYKIASKTIATRISKLLPDIIHPNQTGYVRNRYIGQNVRMIFDLMDVTQTEDIPGIALFLDFQKAFDSLEWNFIRKTLKTFNFGPDIIKWFNTFYNDISSCALNNGYATPFFSLHRGLRQGCPMSGILFILAAEISGNAIGKDEQIRGININNSEFKxTQYADDTTIFVADMKSANHLFALSKKFNKCSGLKVNLSKSEGLWLGRNRHCQETPFGIRWPKKSVYALGIHFTYDKITLKKEYLSVKLESMKKLLDVWKMRNLTLEGKINIVKTLALSKLTYVASLISIDNDFTTEVNKIIWSFIWDRKLKISNREDHHTFSVKLMSDTESI
>L1-3_PTr_gag#LINE/L1 172-1332  [Populus trichocarpa]
MLMTLHNMEGFRFLGASKAILTFKTQQDMQLAADEEKEFWGQYFEELRPWCITDKASDIFSWILISGLPIVAWNMECIKRLVGGDCKVLGYDLTSVSKGAISGLTILVGKPPTVSINGTVNLTIDKEKVEINISEIKYEACTDLASLIYSXGVNQEFDSELDCTSSPSDPEIVATKEQPYMXANKNSSFTDLEYVTEVIMMQCFSRCEAEKERDAHGYEAQVYFPEILDDYMIQDLTARGKWQTSTPTISNIPRKDKEKGTDNMSVMEEDQQSWPTSNLARSMTLRNGKQLGATKCHEGHRKAAISTDSNSSAGNEDSIDSCIRAVNQRLQLSQPPSDLPTACDEVGAMKEIGQKLGIEFGTTGESIEVTIQEAIDAEQDHWDRYVQ
>L1-3_PTr_pol#LINE/L1 1298-5042 via tfasty with BNR1, 2 frameshifts. [Populus trichocarpa]
MQNRTIGTGMSSRLLCICAWFYVPFMILSWNVCGLGSSSKRKAISKYIKDFNVIVCFIIETKLSCSDSMVSSLWHGQNIKWFSIEAQGRSGGLLAMWDEDLFRVDSIEYAGSWISLFGSFVDDAFDCVITGYYGAGSRAERAASWLELTELKHAFSDYPWFLIGDFNETLSKTDRSSGLLDRRGASEFQTFIDGCELVEYPLVNHRFTWFRGGSMSRLDRAFAHTQCLSHFSSLKLIRLDHGLSDHCPLIVGKEQVNWGWKPFKCLDCWLMAPSFQNTLKVFWQEIVHDIPGDFQVIRRISALRLKLGQWNKTEFGNQDWALQNIQSSIRLLEDQAESGKISDSERKRLYELKGMQWKLCRYVESIWRQKARQSWLKLGDRNTRFFHISAKVRGCKNYIRQIIYNGKILSSPTEIKEGAKAYFSNIYSESLTSRPTMGNADFMKLSENQAAWLEREVTIEEVHLAIFSSEGSKAPGPDGFNFNFYKKFWELMKHDLFTMVLEFFRRGYLPKGINTSYIALIPKVAGSSSFNDYRPISLLNGLYKIIAKILATRLKEVMQSVVSPSQSAFIAGRNILDSVLIANEMLDSMKSRSCQGFLLKLDFRKAFDTVSWSYLNDVMGYMNFGARWRKWIMACVSTARLSVLINGSPTSEFTASCGLRQGDPLSPFLFCLAAEGISVLISRSLKMGALYGVXSAGTKYIHHLQFADDTLLFLPNDLQCLLNTKRMLRWFSLCSGLNVNFHKSSLVGVGVDGIYAEGISGVLRCRCDTLPIKYLGLPLGANPKRISTWKPVLSQIRGRLNSWKGRLLSMAGRAILIKSVISAIPLYYMSIFCIPKAVARKITAMQSRFLWGGSIDNRKIPQAAWETVAKEKDRGGLGVGTISAKNKALLFKWIWKLGSNDKASWADFIKEKYRPTFINGVPQFKKKLSGIWRGISSTITSKDLDSTLIRAGCKLKMGNGNHVNFWSDTWLTGFCLANSYPALFRLSSSKAGIVSQMGYWIEDTWYWNLKWIRPLRTSENLMFQRLMSDLNLAVIHRLKEDRLIWEWGKDGGYTVNSCMLALERIRYAGSKTYVTDVWKSICPPKTEMTLWLALNEGLCTRAFLVKRHILSPQEDWCPFCEQHSETVSHILMHCPVVWKLWNKIVAWRGLSWVMPYALDDLQCQWLGLLQGNHCKFERSVWGGFMFSIVWTIWNARNNLIFEEKKPIWEDILWHLFYFAAGWIRNLNSSFWYTGADLYRNHECISAWSA
>L1-3_SBi_gag#LINE/L1 62-2206 via tfasty with 38346464_Osa_gag, 3 frameshifts and 3 stopcodons. LINE1-3_SBi similar with even more errors. [Sorghum bicolor]
MAWRINKATEEEAQGPVCEAGVCHLHEEHFTNQCPLLRGPKPTVAYCGAAEDGLGFFQIQAQGTGQIVDTVQSSAAALITVEAGEVSAQLLQAELARIIPVRWDWEVQGQGANSFVVPFPSTEELERMIAIRTITTKNKEGTIVFEEFVDDVQPIKMLEQIWVTVTRVPRVLRSFLPLWAVGSIVGATQKVDMAHLRATGQVRILVAVMDAKKIPKMADVCAGSGIYRLYFKPDEAPQVEAADPEDDDLLGDGDKDADGGHREMEDAEDPNPNAENNNDGKSDKAPAPPDCPLRSKPPWWIRLWTWLxTAANEISIKVMLEADDGSARKPTPLxRRKNWQLIIILLITLLLLFCSTLIWTTLPAAAVRRRTKLSSSGLGGSTPPPAPQPALPASTSAGLQRPRLGRMPRPYAQGRASAHWPPTMGACCCLRPGRRGDVLPPTVTAVGGDLRGTPTRRPPRMGACRCCARAxGEGRAAPHHARGQRLGRRRGGVRCCADWARSARLPRRPRWTPSRRGTTAGRLLLQQRLPRPHRPLPDFVPDLHDLAAPSAVPAAPIKELRRSTRIAAVADVHTLHKAEGWRQRRTSTFPGNSFTSFPDSKVISNLGRVGINLGPSDVVVIKNIEVDRLVLCANQKKNIPKSKFSSLHSDAEREDRLEAVLSHACGDLNENMLDTENDQIIDLSPLRRKKKYNNAKNSGKGKLPKKPKTPSKIILK
>L1-3_VC_gag#LINE/L1 113-1837 (QAPPQL-repeat collapsed) [Volvox carteri]
MAENGQARTSAPNERSNGRATAPAARQQPSRAQAERKFVNIDIIMETVPEGTPFHAEQDQVTMEIHWPAGSDPADIQAQLHGPVGKAILNRLRAIIPPVEAEGLLGPRISKCPQRALPSGVKVQEISILIRKGGLAMLTTSPAVQRGRLHLGPVHLLPSSPPVEVELPITNLYKAERPYWEIKGIPTYLDPRVIPGFLAVCYSTQWFRWDESDIHELNPTMMADTWRVKVAQDTPGLPGEKHFELGRAGEATRSGILRASRLKRTDQEGPFTMPCKAPPRKELARQTQQLQQMRRQGRTAQPVAAPGQPGPSNGGGPSYAAAVMRSRWGMETAMGAGPQLAPMGRGLNPELQPYVTPPPVPPASAITTTNVATTITTAANTPAAIAATNHAASNPAVPAQPGQAAPATAAMVGPQQAPPQLQAPPPPPGPCRCSPPPVRPRNSQAPRRRQQLYKG
>L1-3_VC_pol#LINE/L1 2464-7203  [Volvox carteri]
MPSRGTRRSQQQNAVQGHPLRIATHNMHGLLATHGNRLQAAVRQWAEMRLDVVCLQETHHTNIQHQCLFERDLRQAAMRVHSQGWRVAAHSWSSSTHTAGVLILVRQGLAAALEPPPNTTRQACMQGRFTECVLRWGGHRLHICNVYLPTGSSTVAADARRLLFSKVLAATSTKAAAPDSDTTLIWAGDFNFVENPELDSSAGPEGRRGDGPIADMRRQAGPTMVDTHRHFHPTRRDFTHLYRAPTPGGSRIDRIYINQPKLTYVCHTSVTFHTPSDHRIATLHLLPCRSEERGPGVRRVRLAFTAHEDLSSSMDTWIRSQCMEAPSAEDNPAGLIAWWPGFKRRLATLAHRLNKAAQQRRRRPGTRAREAIAAVQRAQQAVDAAPTAPQPLQQLADAQAALARAHQEDGSMAAKEARAHWLRAGERTGPALTAFLKAQAAEQQPAPVALQAHSGRLVTNPAQLPQVVADYWAEISRAPDFISPSARQEVLAQLSAANISLPANADEQLGSKTITAAELRVALVKSQPGKAPGWDGIPADLYRKFWSTIGNTMAGLFTAIGATGQVPTGFLEGIITVLYKKGDPKQPGNYRPITLLCADYRLLAKVLANRLGPALGRIITPEQSAFLPKRLIGASVMFLRHLSHLLRKQNRRGLLAFLDFAKAYDTVDRDFLLAAMEAMGAGPQLCSWVRLLLSNTQARAMVNGFKSRLVGMEAGVRQGCPLAPLLYLFIAQALLCWLRSRDVGVKLRPNDQDRVTACQFADDTEVALEGEESVPSFLEAMETFARASGQRLNVEKVELLRVGAENQQQQQQPQPAGRQQLQQPLHQQPQQETIGGLKVVTTATALNLPVDNRPTPPQPEWPKMLAGAYKRMQRLARFPLSAFGRATATSAYGLQTVTWHMEHGGPPPDSTLDHIERLTARLVDRQQGPEDPGQRLTGVPSSLLVGHPSTGGFGLLPLRQHIHARHAVWAVRFIAQALPAAGCEGRGAGGEVTGGAGGDEEVAAATNSEARGLHPWVRTLSAYLELTHPALQPWALTTARATGPWLGSSDLPADISRIVGALGHLPPLEDIGRTPLEPGDWCWAAALWGNPLLPNATNAASTEGPSRRPGLEAYHAALTPCRKLRTVGDLVRVWEAVNTSQATTLQGAAWHSWAREHLDPATDPAQLQDKDAALAALGALHSDISPAWLAAAHAVEIRLRQQQQVEEEGPQQQPPAPAATLPDCAQVMAMIIGRLGWRLPGATDAVPLRRLTVSLATQLQNGHVDERRIRLMTDFVHEALNTPEAQAQPDNSAEVSRFQATLARLWHGVRWENENKETMWRLAVDGVPLPGNTHLARVPTEPCGCGTYGGAAGRPCPPRLHHFWECPVARAVREQIDRHLPHTQTTVGATTTRQQLWLAQAPPGCEQGPWDVIALAALSAMEVGRCCLRAATRRQGRMGATATAGQQQQQQQRQQQRQMMGQPQQQRSRQRAITDFFTPAGGAMQQEGPTLNAPADDGPTQEAGAGGGEAVAAAATAGATGASPLARARARAVADFWARLRSFAMLETPRHGWDRVGPQHPILAVVEERMRCAAPVEITA
>L1-3_XT_gag#LINE/L1 773-1696  [Xenopus tropicalis]
MGKNTQRARFKAATRLERFAHTHQVSGDNGGSQPPSPALLDSQPEPSPTEPTMSELLGAIIENRTTATTQLEEIKVDLSLLRHDLQNITERTTSLENRVSHLDDAVPRMQSDIQAIKQQLQQAVTKSEDLENRLRRNNVRLIGLPERAEGQQPEQFIERWLKDTLGQDTFSSTFVVERAHRVPTRPLPPGAPPRPFLFKLLNYRDRDAALRAARLKGPILLNGATISLYPDFSPAVQKERATYTAVKRRLREANVPYNMLYPAKLRVQEGGKAIFFTTPSEADEWLTRKGIQRSPPRAGRPPTSNSRQ
>L1-3_XT_pol#LINE/L1 2242-5960 via tfasty with L1-1_XT_pol, 1 frameshift. [Xenopus tropicalis]
AILSWNIRGLNSKYKRSLVFNYLKRRPCDIFMFQETHLTGLKVLALRKPWIGWSYHSTYSTHSRGVSILVKKNLQFELTKMVTDQFGRYIILQANIANKPLILVNLYVPPPFNIDILNQIMNKLAQFSPAPLCLMGDFNSCMDPSLDRLNTNTQGPTKLAQWTTSMLLRDAWRWKHPTQQSFSCHSQAHKSLSRIDLALTSPDLLPLLDQITYLPQAISDHFPLLLTLRWLPPTTHRAWRLSPLWLKNTEVEARNTEAYEEYWTTNINTASPNTVWDASKAAMRGTLAQAIAQARNNAKAQVKQAEEELTQAEREHILSPSDHSYNKLLQARNALEREETILTKKAILYQSQRTFEKGDKNGKLLAFLAKAQTSPSAVARIQTSTGTWVNEPSLIAQEFATFYQKLYTSTVKYTPTQLSQYLDTITIPTLSPGSRALLDHPISTQEIEQAIADLPPNKTPGPDGLPAEWYKALSKTISIHLLETLQYAYDNKTLPPSQLEAQIVVIPKQGKDPADCSSYRPISLLNTDAKILAKILANRLKRVIADLIHPDQSGFMPGRSTAFNIRRLFTNLQLTHAEKGSRIIASLDSAKAFDSVEWPYLWETLKRFGLGPRFIAWVKLLYNAPKACVRVNGITSALFPLTRGTRQGCPLSPILFALAIEPLAILIRESQSIKGLTYQTITEKVSLFADDLLIYLADPDTSLSALLQTVNQFGNFSGLKINWEKSVLYSLDNPNPPALAVDTPLKWVSSFKYLGITVHSGLDQYIPHNLNPIITSLTNDTENWAKLPLTLWGRVNIFKMIYLPKFLYIFHNAPVYLTAKVFKAINKILIPFLWGNKQPRIAWEKLTASYTDGGLALPNLQLYYMASQIYYLHWCFLPDPYNPNMTLQALTLGSIEGMNNFPYRHVNDFPKVPTTLSVPYRNWNAALKLYKRDPPLVSARLPIWGNSYLPHLRNLQEFILWPTQNFKYLGDLLINSTFPTYEQISSKCQPPKPQFYRYLQLRHAFNAQFATLSPEITSLDIEHILHKPEAPKLVSHIYSILLSTKPRPFETARTRWLTDIPQLTSEVWEEATDNCYNYLISTRDRLVQYKIMHQLYITPYRLHKMGRKPDPSCPRCNASPAGFFHMIWSCPDIARYWYKILKNLADNLDFPHVTSPSICLFGILEDIIPSSYARNRYRTLLFYARKNIAMHWMGARPPSIKTWKQLVNQAIPLIKLTSEARGTQAKFDLIWNPWIEAGLD
>L1-4_Cis_gag#LINE/L1  472-1845 [Ciona savignyi]
MNSKEIPDIDVELPRTIVIKLTGNVEHMSISSFMEIFAEDGPLAYLAPLIDGVIMESFRECEFLVTLKDDGRDHPISLAQQTIDSVNEKTDMFIGPKGSAMTFMAMLPQPPVETVTLHPIPCTITERHLKLLVNKYKWGTYKSYNFGNHRNFPTIKNGWLSINLMDXNINNIPKVIKIGGKWITVTKPGESHLELCRYCKERGHLQSKCPKKGYCAFCKTHGHITRRCRSAIPPPFPQGXPSPPNPTLGDWILPKRTFKNPLQPTLFQDNNILPTTSNQFYVLDTPSHEENSDMTXXENINQEVLPPKKVTKSPRPKSTPRKLKANNIGAPNQNSTMDSFMNKSNTDPRETSQYKTPDETKTKQQXTKIDLDDNVKSDIDSSPPATTDSNQSSKDVSPIEVIKKAHKKLVYGLANPILKYTDNNPPTIRRSILDRKKDLLGTTMSPNKRRREENEPRT
>L1-4_Cis_pol#LINE/L1 1907-5434 via tfasty with L1_Cis1a_2541-6080, 3 frameshifts.  [Ciona savignyi]
MDNTIEESIEILSYPLNIATLNINGISTKLNHLENYIQINEIDIICIQETHRITPKIIHTLTNNLHYKIFINCLVSDVPSRNAYGNITLIKSHLLNKFKFDHNIXLDNLMDKITXKCNSIIINLYNVYLKCKNKTVRKDMILKLKDNIDNXITHNIILXDFNMVMDEIDVNGYFNSKNHMDRAAWKQLEKDYNINDAFRYFKKQQITYSRIXEKSATRIDRIYTSKSXNNKTLNYSHKPNXFXDHNNCPVISLKIDNDKKWGPSFYKLNTSILEYNDXIDHLIFFWKNLRREKRKFSNTLPWWDTAKLAVKNELIYISSDIKKGEKQRYETVNKKLKTLRKQISTPEINKEIALIENNIEIYERKLHKGALIRXKLPLLENEEXPTKAFFAFEKEKQKRDAIFQVKTAEGNLTETPIQXIKEIHKFYLNLWGVAPNVCNDDIDNYLNTXNPITDDGEFDQLNKPINCDEIKIAIDQMNETSSPGMDGLNVVIYKKLFNTIKYDLEELYNNIFXKGQLTNSMKTAXVKLIFKKGDKSEIKNWRPISLXNCDYKILSKVIXNRFNVIINKVISKNQKCGLKGRXINEALYNIQASLQSAKQFNNKLTILAIDFEKAFDRTNPKFIIXICQKLNLPKTLIQWVNIIYSNIKSKIEINGTFTPEIPIKRGIRQXCXLSMILFLIGMESXTXKIYNNPRIIGYKLNQIELKXEQYADDLTILTNDKNSIQPIFKELELYGRISDQKINITKTQVISNDAEAISKIQQLYPDINIVENIKILGITFNLXNQCNNLNWEKYMKHIINTLNINKRRKLTLRGKKXLINXLILPQINSIGEIIQLPKIFLNKINSALFNFLWFPTKWELMKREKFYASMNHGGLAIPNIKIRLDAMKATRXYKLKQIERVAEIWHEWARFNLGSTMKIINKNLYSNSKPNATYPNDFFRELRHIFFNLNKQDYDWKNGKTKDFYFGLIXNIALKTEIEINGETVPWQNICLNNKSISAFFNHIERDNSYKIXQNIILHGDWFTSKSFSNYHNGKLLIRRCKFCKGSDDNIKHLLTRCNIINKIIDNIYTYINNISYGNYTKSDNLILYNGNVLLQKEELLPIKFINILKSHILQEKKRLDIANIYIWNNDEFHRKTLWIVKTKFKIFLRRIMIKNGLTYTQQKFKLKDNYNPYI
>L1-4_Mad_gag#LINE/L1 298-1890  [Malus x domestica]
MGTNIVCPWGFLAETVMPTTNMPPAQPILKARTFASVVSIPIEDVHLSQLPTPVVRGDKTYVKISEDLYQEQLKLFQNNLLGRLLLKKGSTPMKTGALKSCLEDAWRPTAPWNLVPIGKGYFDIHFNKEDDMRRAWGGGTCTLATGLFRLSKWTPDFKPGDVLPQTHAQVWIKIFGLSQEYWHPRHLMEIARGVGTPLQLDSATRERQYGYYARILVDVNLADDLPTSLMVERESHGFPVEVVYENLPPKCSHCGLIGHLANSCRQLKQMSRGRSRSRTRKGGNMGDNKTGDHSRSQLHMEYRPKKDTTIPVNVFCGSHASEPLQQVDQLLPAGIEAADDGNXEPILQSPLGTTPTVSGNVIPETDTADTHIGIQSPGISHISNSMTGSLSPDGSHPQNGLSYGQHLGNTNVPNNLGPHDLCDDSSTPPGFEQVETVAQNSQQLGNTDVPNNFGMQDPHDNHSIPPGFEHVATLAKDVIDIVNHIEGCDMDGFTPVLSNSQRKKQKQLANLNQPSDKPYPSRVRGIPARYK
>L1-4_Mad_pol#LINE/L1 1890-6041  [Malus x domestica]
MKVLFWNIRGIGNDDSRTELSNICRLHHPDLVCIAEPMVTFNSISAAYWDSLNLSALTFNSRGTLAPNLWLLTSSACADPLVISISDQQVTVRCTFDHIPSQFTFVYASTSPIKRRDLWADFISLRPQTQVPWMAIGDFNAILGAHEQMGGGRPSQASCAEFSNMSDTCNFTHLNTSGAAFTWSNGWRSRGRTERRLDRSLCDISWFDSWPHSNCIALPKVVSDHNPLIFSGSRVLSSGHRPFRFQSMWVQHPSFRETVTHCWRNTVVYGCPMFIILQKLKALKTCLRQWNFSVFGDVHNRVANARHNLSMIQQRISTEGINNDLFEEEIVAKTTVMESLQMQEAFWKDRARVKWLTKGDRNSSFFHAYARIKSSSSRISCILDGNNLLTDPLAIENHIVNFYQTLFGSSFTPSGIDEVCEVIQPMVTDSENDLLSALPTDEEIKEAVFSLSASSAPGPDGFPGFFYHHCWDIVGFDVIQFVKQFFQSNWLYPNANSNFLVLIPKVEDAISMTHFRPIALANFLFKIIPKILAVRLSHVVQRIISPHQAAFIPGRRITDCIGLVSECFNVLDKKTRGGNMGVKVDIAKAFDTLDWSFLLRVLTNFGFSTCFIDWVSTILRSAKLSILINGSPHGFFSCSRGVRQGDPLSPLLFCLAEEALSRGLSRLQLDGLTKPTFAPRGCISPSHVLYADDLFIFCRSDGVTLRNLQGFFDRYSRASGQFINKAKSTFYLGSTSRHRKAVVESYLGFKEGKAPFVYLGVPIFCGKPKRSHLQALADKAKAKLTGWKGKLLSMAGRVQLTQSVFQSMLLHSFSVYKWPSSLLRPLSRCARNFIWSGDVTSKKSVTVSWRQICAPKNEGGLGLRDLGSLNTTALLKLGWLIITTDSPWSIYLRERFKLHGRLYSCSYKRSSIWPGIKSILHILFQNCRWVIGNGSTTSLWVDKWLDKPIVDVVGATEIAXSLSRTKVSNIIRMGKWVIPSIFSSTFPDLTKEILEMPLPIDEDKDVLIWEVSTSGVFSFSDGYEIVRHRFPVKSWASIIWRPFIPPRYSILVWKILFNKLPTEDQLQRRGIPLAPICQLCHKNSESIDHLFSSCEFAQRAWRWLATQFGTIIPPTGSLSDLWLVFLSKRFSPHLRNVWLASGFFLLMAIWKMRNKVKFEGKPPSFSRLCRSTSAWIRQVGALTPGHVRGILDRQLLVSLGISPNSCKAPSIVPVLWHPPPFSWVKVNTDGLAKGNPGPAACGGVFRDSAGYFLGGFSLSLGHRTSFYAELHAVILAVELAHARGWQNLWLESDSSSVISCFASGSFSPPWSLQTRWNNCTLRLQNMVFRCSHIFREGNVVADKLANLGLLSSSLVWHSTPPIEILPPLHSDFLGMPTYRFVSSS
>L1-4_NV_pol#LINE/L1 1-3741 via tfasty with L1SU_SP_pol, 2 stopcodons. [Nematostella vectensis]
VSFLQEIHSSPDLKENWKRQFRGEIFMSHGSTESKGGAILFGKNLQYKILETIVDSGGRFLVSHCEIQDQEFILINFYAPNEEKDQVEAIKNLYEKIQTINASVNAPVIWGEDFNVVMNLTLETFGGNPVLKTHTIKTLETILVELDLCDIWRLRNPTKKRYTWRGCGQGKASRPGQYIHRRLDYFFISDGMQTSVELYDIIPAPSADHSAITLKFKSSKENARGPSFWKFNNSLTENQEYIDMLTTKINEIKSSLTIEGIDNPQLRSELIKYEIRKFTIGYSKVLARQRRCEYKDLEEKIKSIEQIEDWESDKSLYSEYNKLKLDLENYSNHVTQGIIIRSKSQWYEFGEKSNAYFLSLEKRNKNKTHIKKLLIDNEEITDLKSILAKIKHHFSSLFQSKSSKTEECLEFLSNLSTPRITEEEKTKCEGKLTLNECFQSVNSMGNSKTPGMDGLTKEFHLAFWGDIGQDLVKCLNDSYDKGRLTITQRKVLITLLEKPKKDKRIIDAWRPISLINVDAKICSKALCSRMKKCLPRIIHSDQAAFVEERTIEDSVRMVADTMEYINKSNKSLILFAADFEKAFDSIEHNFIFAVLKHYGFGSSFVNWIRVILNENMSAVVNNGHCTDFFPLGRSTKQGDPISPYLFILVLEVMATMIRECKEIKGLQIGNQEKKLALYADDTTFFFFLGDTASLKNTLIILKQFSxFTSLKINLSKSEVGWLGEEPLQxQVLGNLGLKWVDFYKEGVMVLGVFFSYNETLSNQKNFIRVLDNFKTVLSIWRTRDLTLFGRIQVVRSLALSKLLYICSKLCLPSGYIREVESAVKDFIWRGRKPKIKYDTLIGPYEKGGLKLPDFASIVKASRIKLISQLLNIEERSWKIIPSCILNEIGGIPILGRENFDTESLPNSLPNIYKNALKEWADVFCHSKVDTLSTRSVLEQSLWCNKFISVDNKLIHLNDFISKDVLCICDLCNDKGELDWQIAKEKGIGEHRFLEWLRLIKAIPAIWREKLMDQPETANMASISSVIREKYVNLKDSCIKADSIKTNDMIYDYLIERILKPPTAQKNLEKRINSSSEIKWETVYTRIYSSTIDSYIRHFQYKILNNVLFLNKQLHKFGIIPDSRCSFCLSFPETIDHFFVECIESKNLYFEARQWLEQYNISLPESNLENILLGIKDEGPENFIIFLYKLCLFKHKNDFKIPSLMVFQNFLKQYEKIEFLVAKRKRKMSAHYQKWENVIEALKKSSC
>L1-4_PTr#LINE/L1 1-881 via tfasty with L1-2_PTr_gag, 1 frameshift. [Populus trichocarpa]
ERDGGKXLFQKTQPPFQTNIIPSHKHRKQPDLPYKPYYPQPQLPSITLNTQNLTNYRGFHLQCYFENFPSWVDYHKLKDRFRKQGKVIKFVSRKTNQAGKHFGFVTILSNLSDKTLLECLNDIWFDSYKLRVNVAKHRRKDEVMKQKTVGTGKQISKLNNKAKAPIRVRDNRSYLEAVRSGSQVHQASDNATPRPHNFISFNTTDEEILWLRNSLIGKISQGVDYAQIRHGLIQLGICFSAVRFLGASQANISFDGEKSMQQAMQKGMECWKLYFDEVRPWTEEDVIESRLAWI
>L1-4_PTr_pol#LINE/L1 895-4518  [Populus trichocarpa]
MNILSWNSCGLGMMRKRRRITKLITEYKIDICFLLETKLANCSIGFVSRIWNENHVSWFSNDAQGSKGGLLAMWKNTNFEVSNIEYGHGWIGLYGKHVHSDFHCFVIGIYAPCNYQDRQXLWDDLILLKHAFEVPWIIAGDFNETLSQKDRNSGICHPAGSNSFSRFLQSCELTEYPLAEGYFTWFRGGSKSKLDRMFANSSCHLHFPSLSLRRLPREFSDHCPLILSSFLQDHGWRPFRFLDCWTQYPNFKHIIENFWNDACSLHPGRFKFLKKLNHIAVRLRQWNKLEFGNQEAALQRTLSAINILEEKCEEEGITDQEQEHLDFLLKDRWVRNNHIESIWRQKSRQMWCKLGDRNNRFFHLIANFRKAKSSILKIHHNGNTFDSQQGIKQAAVDYFSELYDSPSERKPQLNPLGFKCLSKESSEWLEQEITMEEVKRSVWGCDGSKCPGPDGFNFKFYRLAWDFIAQDILDIVLSFFRTGRLPKGINTTYVTLLPKTVXPIEFKDFRPISMIHGIYKIIAKILASRLKTVMQDIISINQSAFIADRNIIDGFMIANELVSDLKKRKAAGLIFKIDFHKAFDSVSWDYLDDIMGYMGFGRKWRSMIYECLSSSKLSVLINGSPSKEFSVRRGLRQGDPISPFLFDIAAEGLSVLFQRASXGNILKGLQFASGIFLSHLQYADDTLIFIPADIDQLVQVKRILRWFALSSGLHINFHKSSIIGINVDDHLCLRLATSIFCRSDSLPSKYLGMPLGANPSRISTWKPVIEKFRKRLHMWKGRLLSMAGRLCLIKSVLNSLPIYFMSVFKMPKGVGRLLSSIQRRFLWCGCTKQRSFCKIQWRLVMRDKKQGGLGVGSLISKNRALLLKWIWRLSSPGTSLWKMIISSMYNPAYENGIPIFYNQPSKIWKDIMSIVQTDVHHVFTNHCKFMVGNGSLTSFWLDNWIGDYPLKTAFPRLYLLSSSKSALVADMGRWSNGIWLWSLQWRRPLFHFEQEQLSLLSSLLESKPMFCHKMDKKIWTLNSDGLFSVKSCSKMMDQLLYGGAKPFQSSVWIKLTPPKVQLFLWLLVQDKVTTRDFLFQHDYLTLQESRCAFCNKSLESSSHLFIHCHFTWNIWMKLLSNRGFCSVFPKSVDDMCYQWSSMVKGKQQNLSWQLLFSCVVWNLWLHRNDVIFNDAAPNLQICFSMVRQSIALWLRLDSNSLELNIENV
>L1-4_VC_gag#LINE/L1 141-1733 Poly-Q region collapsed [Volvox carteri]
MARNSSTDQAAGVTAERSEATISISLLREITKMEQPFGKLRSLAMRAIFQGNYLENRKQVIDIMAGPIGHRIVQTVQQELKAPYVFVGEPVAWEARNDEGVVGQINVYVPEEWITPVKNLADHCGRINLADLHLGDYHIQDLVVDIVGASAQYFRLTGLPPAFPQKCLFWLIAEAYGFDVDEYGKKWGIVEASLTTAVVWVRWDQPALPARMNIFSIEEDGRRIHRGAWRAQHTYYDTQTPALPRPPKIQQRNRLIPNLPPPISAAAVIAARARPNLATPAVGEVGGSSNARQPMATGQPQTIQQTTRQQQMQNRVSNEEAAEMAGRAAAAVVRRQVQQxQQLSYTTTNQPGLPTSASIPKTHSITHPLLGQPIQDVAGNRPDEQQWQLQNRRTHRGNPILPTDQPVLGKHADKPTSRTSSPGVSPQHKRRDSVISPPRFHVLPHDDPGDLMQVGEEEEVRNIVVVRGNGDTEIPPR
>L1-4_VC_pol#LINE/L1 1737-5999  [Volvox carteri]
MGRRTRCRRPNNRPLRIASHNVAGLFTHSAFTRIHAAARVWAQHRLDVICLQETHHMGDGDLTILTRELQFAAQKIGIPGWDIIAQSPTTNARTAGVLVLVRKDLYRDFKIIQTPARLLPANIPQGRSASVSFTWCGHRIHLINLYLMTSSYSIDQRKACVHSLGDVVNRIGQDDHLLWAGDFNFVHNPMLDSTTGEGSRPADLSLAKAFSECCPDMVDTYRYLHPTRRDLSFFYKTSVSGGSRLDRIYTSTNLTPFIASSTIPVCTSTDHRLAIIALLPRLVRKRGPGLPRLHTHFLDFPDLKGSFLQWIGDECAQRPAETDTVAMLQWWPLFKHRMFNEVNVLNRQARERCFPPGGQLRLAIEHATRALEDVQTEHMSAQRIQAAIDAQVAVVQAARAEGAQEAERVRLQWIREGERPSRGLTALVHPSKTLQVIPALQDRTGRLITDTMKLPQMVADFWGEICSSPTHVTEEARMAVIEALRNRHLVIPEEDAYHVGRSEVSDAEVEAVLKEATPGKAPGLDGIPIELYKVCRNEIAPVLAQLYTAMGQTQMHPDGFLQGAITVIYKNRGSPTSPGSYRPITLLNTDYRIFTKILTRRLSPILGRIITLEQSAFLPERLIGANVLFLRHLPQLMSTTGQSCLLAFLDIAKAYDSLDRNFLFEAMDAMGAGAGLISWTKILLSDTASKAVVNGFFSREVALTAGVRQGCPLAPLLYLFVAQALLCWLQYNQVGIHLPQNNSEMVTGVQFADDTEVVLEGIQAIPAFLDCMRVYAQASGQQLNLDKVELLPLGTHPHHITINHDMKVVHMATALNLPFTDVGETTGRDWDVQLDKVWARFRRISVLNLSIFGRAHAAAAYGLHRFTWHMEHGGFPPEAQLMNIEAKAAKLIDRNLGPVAQERRLTGVPKYLLYGHPTLGGLGALAVRQHVQARWACWAVRFVRALLQPVLVRPPWVMVMHSFLHSLYPKYNPMCIFTSQVGVPWFGLIVLPPDVQRIVTALAYLPPVEDVDDHPLVPNAWCWNLPLWGNPVLPEKKLNVQLDNIRPGLEFRHQALLGCKALHTLGDVLCAREALDGVMNATDQAGLAIRKAWHQIVDKYLQPQTPLAKSLCTYRKWQECMDAIAALLDDIPANWRQAASLLLPLSVESREAMVPPIESVTQTLVSRLGWRWGVGPPIRFQQLSVKIATNMQLSPFSMARRVAHTLFIKEATGSSEILDEAILLLQRTFHRLWFHLRWENEQKEIWWRLAVDGVPMLGNSHLRMSRPTICGCGGYPIGSVGGVSPRYHHFWACPVAQAIADQLTLSIGLPVSREQLWLIQAPQSVQQCVWDVVALAAVSAMEHGRRYMAANMKTNPALLPGPSLTEEAICRVIVDFWGRIQGFAALGIPRKGWESVGAHHPFLRIISGKLICSRERLPMRG
>L1-4_XT_pol#LINE/L1 2286-6018 via tfasty with L1-1_XT_pol, 1 frameshift. [Xenopus tropicalis]
MAKISVTSWNIRGLNSKFKRSLMFTYLKRYPPSILLLQETHLTGQKILALKKPWVGWHYHSTYSSYSRGVSVLIRKGVPFELIKLHTDYYGRFMILHGLLAHKPITIINIYVPPPFAMSVLDQIISKLAEFPISPFLIMGDFNNCMNPSLDRSKTEPNTSTRLAGWADALHLTEVWRWKNPTARIYSCHSLTHKSLSRIDLAFASADLLPMVDTIQYLPQALSDHSPLSLSLRWNPSPVDRLWRLSPLWLKNEIVASQNQKAYTEFWELNNNSASPLMLWDASKAVMRGELTAVISQARNEKKEQLNEAEKSFIAAETTHTQNPTEHTYEQLLSARNSLSRATISLTRKAVLYQNQRIFEQGDKNSKLLAYLSKPQNNSTAIPHIRQDDGTLTTEPKNIAQQFASYYKNLYTTTTTYSKTQLAQYLASIPIPKIAPADKAYLDAPITKQEVADAIATLPSNKTPGPDGLPSNWYKALAEYIPTKLLETLQYAYDNQALPASFAEALIVVIPKPGKDPSLCSSYRPISLINTDAKILAKILAARLQRVVPDLVHPDQSGFMPGRSTDINLRRLFTNLQIPHLETDTRVVASLDSAKAFDSIEWGYLWEVLSGFGFGQTFLKWIKLLYQHPTARVRVNGITSPSFSLERGTRQGCPLSPILFALAIEPLAILIRNSPDIRGLTYGNIQEKLSLYADDLLIYLADPRDSLTSLLQQVDKFGHYSGLRINWDKSILCPIDPLQPQPVIPNIPLKWANQFKYLGVWITADPTNYIPLNLDPLLSDLKTRLTQWSKLPLSLWGRINIIKMIYLPKFLYILHNAPIFIPKTFFKKLNQIILPFIWNNRPPRMAWTKLCAPLAEGGLALPHFYHYFLASQIHYLHWCFIHDPYNPNLQLQATILGSLEGLRNFPYRHLKDTAPLPTTLTIPHKAWTIALTLLKHPPPLLTSRLPLWGNQYLPQFRTLHNFIYWPRHNIKYLGDLMEHSTFPTYLQIREKAQQPTLPFYKYLQLRSVFRDQFATLTPQLISLPVEATLQSSNPVKLTSNLYQNLLSTGPKPFHSAQIWWTSQIPALTQDDWEEATDTMYNCLISTRDRLIQYKTFHHLYITPLRLHQMGRTPTDHCPRCAASSANFFHMIWSCPHIAKFWSAVTKYLSNNLAFPTVTAPETCLLGVLDSIIAQNSSRLRYRILLFYAKKTVAMHWMGTTLPTVTAWKNLVNAVAPLYKLTYENRGAPDKFDKVWGPWCDLEGN
>L1-5A_XT_gag#LINE/L1 190-1113  [Xenopus tropicalis]
MGKHTQRARSEAAARLEKFARSPSQPPPDESSCQSSASEPTGPTQPPEHREPTLGDLLEAIQESRTATTAQLEGIKIDLSLLRHDLQNLRDRTAAAETRISTLEDTVSPLNNEIPTIRQQIQALMGKTEDLENRLRRSNVRVVGLPEKAEGQQPEAFITKWLTDTLGADTFSPQFVVERAHRVPPRPPPPGAPPRPFLLKLLNFKDRDAALRAARLKGPILYNGTTISLYPDFSPAIQKKRASFTGVKRRLREANIAYSVLYPAKLRIQDGERTQFFTTPAEAEDWLTRRGHRQPSPRARGTPPNSPR
>L1-5A_XT_pol#LINE/L1 1707-5477  L1-5_XT_pol over 90% identical. [Xenopus tropicalis]
MFGTSPRARCRSGEPILHLSPTTLMATCNIISWNIRGLNSKFKRSLLFSYLKKYAPSMVLLQETHLVGQKVLSLKRAWIGWAYHTSFTTHSRGVSILIRKNTPFELTQLITDHYGRFIILACLVANRPITIVNLYAPPPLTTSLLDHIAKKLADLPLAPTCILGDFNQVMDLGNDKLHPTTTGPTNLTHWAEALHFTDIWRWKHPTDKVFSCHSLPHKTFSRIDIALGSPDILPTIDTVQYLPQALSDHSPLQLTLRWLPSPCDKLWRLSPLWLQNEEVDKTNTAAYKEYWEHNLGTASPSTVWEASKAVMRGALSGAIALARNTAQESVQAAEKALADSQTQHFANPSPLTYSSLLEARAALERESTAVTRKALLYSSQRIYDQGDKNSKVLAYFAKTQHTTTAIPRIKTVSDSRDIAATFAKFYRDLYASKAHYTKTQLTQFLDKIPIPSLSPAERAWLNLPITPGEVQLAIQALPPNKTPGLDGLPPDWYKKLADVIPTHLLATLQDAWDTGALPPSFTEALIVVIPKPDRDPAICGSYRPISLINTDAKILAKVLANRLAKVIEDLVHPDQSGFMPGRATDINLRRLFTNLQTPHREIGSRVIASLDSEKAFDSVEWPYLWEVLKRFGLGQHFIKWVQLLYRNPTAKIRVNGIISEPFDLSRGTRQGCPLSPTLFALAIEPLAILIRNSPTIQGLTYANISEKVSLFADDILVYLANPAQSLPALLQEVQNFGNFSGLRINWDKSQVYALDHIPPVPLPPGMQLQWVQSFKYLGIWIHSDPTQFTKLNLDPLMDRMASTLKTWVKLPLTLWGRINLLKMAFLPKFLYVFHATPYPLPRSLFRKLNTLVTPYIWASKTPRISWQRLAAPLQQGGLALPHFFLYYLASQISYLQWQFCPNPYNPNTALQASLLDSIEGLSNSPYRHITDGGPLPDSIKTPHKAWATALKLMGHSPPYLSPYMPLWGNSLLPHLKNLPDFIIWPRLGIKKLGDLVQGAHFPTHQELQSKEPQVHLHFFRYLQLRHAFQAQFQTLTPTLVSLDLEVTLHQPIAPKLLSRLYAHLLEFNAKPFERARTLWTNSIPSLTTEQWEEATESCYDFQYKVLHQLYITPNKLHKFGKVPNDCCPRCKSPQADFLHLIWSCPPIAQFWATVMNTIATELALPNVLSPTTCLLGTVEDILPTNAARVTFRSLTFYAKKAVIMRWMGNSVPTLELWRQLINTALPLIKLTYETRGAHENLKKSGECGVSQIGPPTN
>L1-5_Cis_gag#LINE/L1 698-2170  [Ciona savignyi]
MAAXKEDIPELEINMERSXIIKLTGNVELISVSSFMEIFAENGPLCYLGPDVDGVITESFKDSEFLVTLKXMDGXCPDLXEIXKIXNNKKLEFTGPAGSIMSVEAKYPEPPLEIVTLYPVPCLVTEXRLRQLLTKYKWGKXHSFFFGTHRHFPDIKNGWLTIKMYNININNIPKVMKVGGRWVTVTRPGESHLPLCRFCKERGHLQQKCPKKGYCNNCSTXGHLTXRCRSAPMRPTQPNXNQPQHGMTQYQTPATTLNQWITPKLAKKKTYQPTNQQPISIQNMFSTLQQFDDTDHSMDEEDTTILKSGPNLQLPQRTPRKNKKQFNSANSTPKLTIDDSPTNLTTLFAQTESGQTPTPEYMINQSDQRKYDQSIPSITINQEXTKEKTSPQQTNFTKEPQQTSQPQQDSPSTXSSQTNGISPTPTDPSTENSPDSAFEVIKKAHKTLGLDPKTHSSAKPPYIRRTIKEITRELFHPESPSKKRRTLEHS
>L1-5_Cis_pol#LINE/L1 2255-5790 via tfasty with L1-4_Cis_pol, 1 frameshift and 1 stopcodon.  [Ciona savignyi]
MDITNNNEIXXNNYXLNXXTININGLKXKLNHLXNYINNNNXDIMCIQETHRVDIETXSKVENXFHLSAFFNTAISSDPKXKCHYGXXIXXKQHILNNFNVAHSILIENMXNIVTLTNNNSXIXLYINTYLPCGXKNRXXRKEYINIIKDSIQVSDTXYYIILGDFNMITNDLDIKNNYDKRRKVDRTAWVNLEKEKFITDTFRRLNKFEINFSRITNVSASRIDXIYTSKNLNHLXIKYXHKRNFFSDHNNCPILSLTIQNSKRWGPSYYKINNSILEDNDVIQTMVYQWENWALQKRKYDNILKWWDDGKILLKNIATDYSRIKARTEKRNYENAIIELTKQNRLPDSVNRNKIIDILDNNISVYEKKLNQGALIRSKIKEISNEETPTKAFFDYEKKHQKRDTIYKVLNCNGEITRNEIETVKTIYNFYXNLWGKKPNTVIPENYLNVFSPIVIDDLDNLNKPININEIEIALSDTNVNSSPGSDGLSYLIYKKLFNTIKYDMEEXFNNIYIKQNLSESMKTSIVKLIHKKGEKTNLKNWRPISILNCDYKILSKIISNRLKTIIDKIISPNQRCGIKDRRINDALYNIQSVIDSSKYFNKNVXVIXVDFEKAFDRTDPXFIIQICKKLNLPKTIIDWIKIMYTDIXSKIEINGTFTKNIKIKRGIRQGCPLSMLLFLINMEALTRKINNNSXIIGYRLNKIEIKTEQYADDLTIFTQDKSSIKHIFTELENYGKVSDQIINIAKSQVISNDIISINEIKNVFPNIQITKTIKILXIYFNLNDNCIPKNLEKIEKXIXNILNINKRRKLXLNGKKAIINTLILPTINTIGDLFXIDKLTINKINNKIFKFIWYPTHFEFLKRNKXYAPYKNGXLQFXDIQTKLDAFKATRISKLKLLNKITDFWQEWARFNLGSTMKQINKLLYTNSLPNKDFPDPFYKIIRHLFYKLNKQNYDWNNGKTKDFYAALITEKWENTEIKINDNIVPWKNINLQNKSIKHFFTNIDRDIAYKLAQNIIPHGFWYESRKISNIYNGKILIRQCKFCRQENDXFEHIFLKCKIVKNIIDKLFQYANNISSKQYNRNDNLILYNKGNNSQKRDLLVIKILSIAKKEILREKQKLDIQNIYLWDNVEFVRKILWVVKIKFKRSIRKQIAIFNLNYIQEKLYLNSNFTPYDGT
>L1-5_DR_gag#LINE/L1 3-1124 named MutsuDr2 by Kojima and Fujiwara gi|34392568|dbj|BAC82614.1| gag-like protein [Danio rerio]
GQVGGRKYLKEATVIINVEDVQEVRAEDIIKAVIEKCGHGKILALRPRQGKEYELTMETEELCEQLTDKLMINGVNCEIKKLHNRDFVVSFMHLPVYLEDKEILEKLDTWGVCPISKIKRRFYPGTDIEDGTRFLKVRFPKEVASLPYSTKIETAEGTQYFRVMHSHQVKTCRLCMSPEHMLKDCPEFKCYKCEERGHFARDCITVRCPECKNFLNKCECWMEGEEGGGEDQDRQVHEENNKREEDNEAIERTMEEEMNNNEKKEGENENEENEVQLSGQDGQWSQMEISDSFKTFLSTVEKEELRKTGQAEGMANDEETRMENVDKNKVERGFLRRRTFKVKPNLDMAKKKVLTKNRAKYVNRYEVLRGLEEDEEK
>L1-5_Mad_gag#LINE/L1 308-1876  [Malus x domestica]
MAGGSPKEDLEELGTRFGTNLILSEKEQGGVCIERKDVEGALLGFQYTLIAEVLTAKAVKGDVFVDCFMSLWRGREGVSIREIGDRRFLARFAGKRDLQRVVEADLPWMFKNDLVLVADRTEKGLNRWTPLSLGVFWVQLHNVPVLSMTQAVAETIGSLMGEVRSVDKTGSRDCIGRFLRVKIGFNVREPLMRGTFVTFPDDGKIWIDFKYESLPNYCLICGKLGHPTRICKETLDERTDPGDCTKTRNEAFAFRGLDAVSDLRGNPLGAGPRSRASSGSNGGRSGSERWNDELGGGRRSGRSSTASGMGCQPQKFASRSQSGSECTAPLEEEVIDTATSPSKPRWSSNKMGHRDNVLAGKIRRQRLAEEEARSARELAFDAGLIGPGGAVAAGAEHVVLNDHYEQEGRVDTVSMTLNGGSTFDLNLVPGVGEDGDSVSASRREASDGRGCVSGCDLATDDDPFELEAIIEAVMNENKGKKRSAREVEYDEVNPCVEPKRSKLSRKSYVEAEETSREGSPKSK
>L1-5_Mad_pol#LINE/L1 1876-6032 via tfasty with SHALINE10_MT_pol, 1 frameshift. [Malus x domestica]
MRLLTWNCQGIGGDLTVDNLLEQNRLHTPDIVVLLETKNKSSRYGYLKKRLDLEYMHAVEPRSIGGGLCVFWRDASQVTLVKSEDFVIEVKIWDEHKKCHWYLFAIYASTDEKKRRDQWGYLSRRLGNNRGKTLLIGDFNDILCNDEKEGGNYRPTSSMRDFREFVAQNELMDLGFVGYPFTWRNNQEAKPIQQRLDRGLATMGWQDLYPENTIRHVVLEGSDHALLFLSTEKVKAWRGRKFSYDARWSKTEECRQLVVEEWRDKHGGSHAFRFCEKLKALRHRLKEWYRGRGRNSKKVIEQLKEEIRAAYMSTDFASEVVKMKERELRAAHRNEEAYWRVKSRAQWLKEGDKNSKFFHAQTLKRRRFNQIKGLEDVNGVWQEDEAAISSIATSYFAELFKSSSPGQIDEIGECLAPRVSAEDNLALTAAVTEEEIKTAVFQIPPIRAPGPDGYSGCFYQDHWDTVGKDVIKIVKAFWHSGTILRKLNHTNLVLIPKVKCPKNMTQYRPIALCNVIYKVIAKVLTNRLKMVMPKVICDNQSAFVAGKQIQDNILVVHELLHSLLHQKKGDQTGMAIKLDMAKAYDRVEWVFLLSMMAKLGFAPLFCNWIKECISTASFSILVNGNPTGLVLPERGLRQGDPLSPYLFLLCTEVSSMLIRRGMERGALHGFSVSANGTPISHLFFADDSVLFGHASVEEARGIVEVLRTYARGSGQAVNLSKSSIFFGSKTSNRVRRKIGRTMGIQCKTGFGRYLGLQSDFGHSKRVVFEEVRDRLESRLAGWAEQFLSQAGKEVLVKAVAMAMPNYAMSCFKLPIGVCRDLEKAIRNFWWRGSEQRKGVHWISWERLMKQKRVGGLGFRDIQCFNLAFLAKIGWRLIQNPGSLLATVLKEKYYPGKSFTEAGKGRNTSWGWKGIFDARKVLLQGLRWRVGDGACINIREDPWFPRPSTFKVKPLVSLQATMVSELIDSGSSSWKSDLILASFHRDDVGPILSIPLSKTGCRDRMVWHHNANGVYSVRSGYGVAMNLMENGALGKKGRGSASDKPKNCYAWNLIWKLKVPNKIKIFIWRCCNNALAVRRNLKRRHMRVDNVCGVCGAMDESETHLFFRCHLSHLFWFSSPLQLNSFELAGADFLSSWELFWARVKGRDNAEEIMQEFAFGLWRLWKNRNEVVFNGVHRQPLELLEAWRRNISEFRDATLCEPAGKQPGCRPMIAPLDRGACRWEKPAFGVLKVNTDASWCKTTLRTGVGWVCRDFAGLLHGAGGSGAELCHSAAAGEAAAIRTALLACIDYGYDNVVIESDAKVIIQMIRHEMDHDFSLECILGDIEVLARRLRSVSFSYVPREGNVAAHSVAKFVFKEGREFGWDCIGPEFLFNILAQDVNLSIRI
>L1-5_SBi_gag#LINE/L1 486-2754 via tfasty with LINE1-42_ZM_gag, 4 frameshifts and 4 stopcodons. [Sorghum bicolor]
DLRGRCFNCFSTTHMAATCSSSPRCFACRGLGHRSAACPSRHPRLIHGSRQSMRRPPAGRGQLIWRPKASAPSRLEAPGGGADAGGAGKSHKRKRRRRARRTRPASGGSAAGDDDGSAGDDDAPAHPLPVPMVGPVKADAAAVPAVPRRILDWSQRLARSEEDLKRALIVTLLGGPGNGELEIVRATIALRFEIEEAWLTLFPWGPARFLLILPNEEIAGTVFNEGRPIKSSSARLHVMRWTRCFQASAASLPVAVEVQLEGIPAQAWDVATAEVLLDELCWMLEVHPRNADRRDVFTAKAWCSDPALFPPELKLEIVEPRMASSPDVRTLTYPIKVTVRPLGRPGDPQDPPRPHxRxGSGSSPAGRNSSSPPPPSSPAPAAGLGEASSSGLPRRTSVHERLGPRVQASAARVPSSAFVRVIDEQPNASDGASRRDITSHRHEEVRAEPKATELADHAVTTGPSPGGSxTRAEVGMASVGVDTTGEGMQDSAVGGSVDVMRSGSEIPRELSxGPSASPPAVAGSVGPQVVAAGSPTPVGPDAVHVLAQVEASSSASPPPTCPAPELHFATPPPAPELLIATPPLGSKGCCAALPRAADPSANAPPGCIPSPPPSATRQRGQKVYSRRRPGRGARGAVAVPAPAPPSPASQFVEALSKMPGGLLPIPHINKRKRRKRIQPPSQEPRRSRRMAGIPVQFEEACPPHLKKRVMRALDMNVEEEREQISQRALEEYAQRFRQPLSAPHTKAMAALFGWDIP
>L1-5_SBi_pol#LINE/L1 2825-6394 via tfasty with LINE1-39_ZM_pol, 8 frameshifts. L1-4_SBi_pol over 90% identical. [Sorghum bicolor]
MDPAHVLNWNVRGLNSAARQDAVRVIVNSYKIDVVCLQETKITVISRQTLILSMLGSDFDNNYIFLPSVGASGGILIAWRSCLGAVSASRVDTFSTSVQFNFACNRGSWWLTCVYGPQDNQAKVQFLQELRDVRAQCTGPWMVAGDFNLIYKDEDKNNSNLNRAMMGRFRRWIDDMEVSEIPLHGRKFTWTSSSASASPTLVRLDRVFCSLDWEEKFPGCLLQSHASSDSDHCPLILGLQDTIASKKRFHFEAFWPSLDGFQEAVKEAWDSVQPRPCPLETLALKLKATARGLQSWSQRRFGHIRSQLLLAKEIIHQLDIAQESRPLQPNELWLRNNLKKHSLALASLLRTIARLRSRIGWLKDGDANTRLFHQHARYRKKKNFIPKLQVGDHIITSQEDKAAAVLEFYENLIGTECDRERTINLDALGNPSFELEGLEMPFSEEEVWNTIKDLPSDKAPGPDGFTGRFYKSCWPVIKSDVMAALHSLWNRNFRNLWKLNSAYITLIPKKPDAVQVKDFRPISLVHSFAKLVTKILANRLAGRLDEMVSPNQSAFIKKRFIQDNFMMVQQTVKFLHSQKQPRILLKLDITKAFDSVSWAFLLEVTQKMGFGPRWCDLVCGLLSASSTQVLLNGIPGESIRHRRGLRQGDPLSPMLFILVMDVLNRMFTRAAEAGLLQPLSRRPIQHRISLYADDVALFLRPTAADINLSIQILQLFGDASGLRTNVQKSNVLPIQCAEEDMACIQDLLPCEVLDFPCKYLGLPLTIRKLTKEQVQPIIDKVADQLPGWKADLMTRAGRVVQVQYVLTGILVYVAMATDLPPWVFKAIDKIRRAFLWRGRKEAKGGHCLIAWPKVCRSRELGGLGIADLKSLGIALRARWPWLKRSEPNKPWANLPLQVSKEVDGLVSVAVITEVGNGANTLFWKDRWLDGKSIQDIAPLVSALVPKRRTSRRTVLEALTDEKWIEDIPGGEIGVAGLAQYLGLWDTLNSVQLHEEIPDKHIWRFSASGRYTAKSAYDGLFQGAIHFEPYERIWKSWAPPKCKFFMWLVAHNRCWTADRLARRGLPHPDKCPLCDQEEENIHHLLIGCVFSRQFWFSLLSRFGLAALAPQPSDQSFEDWWRKVDGATTGDVRKGLNSLVILGAWSIWRHRNDCVFNGAAPNVNVALSMARDEAHWWSSAGAKGLSLLTAGXLV
>L1-5_VC_gag#LINE/L1 223-2376  [Volvox carteri]
MSAATSSRRQTRGPPQPPALEVACTQELQQAALRANLLVVSFTTIIRDRSRTELEGHTRPLQKSLYQALLPLLHSAIANRRQMPGTAGGERISNCAAGLSLTYDLAIPQQQRHQLISLLDTRSQLRTTVAGHTPVWWVAREGPYYVIPQPLQILTHGWPLGLTESAVRGQLSKLLPADVILGVSPWYHYRVHCPIPALDKWIISLRSGYRLPNDLPCRWHVNGALDFVVLATPFETEAYQTQKSAVAHIAARTMTTAGPNDDITTTVRAESSYAAATATQQREGPTLTTLHQQPLQQQAMNGDVAASPQQEAGATAVGRRVAPAAADGQRQDAIVHTIQREPNPAAPTQQEAGDTAVGRRAASAAAVGQRQDAIVHTIQRVPLPAAPAQQEAGDTAVGRRAAPAAAAGQRQDAIVGIIQRESQPAVAPQHDSLIIAASQWDAIVDAAEQRQDATPPTTRQELQTTAKARRDSPSQADLATLEADRPYTTRSVRRRTLSRDLSSESAEDDAPMQNAYDTLSPLVDLQLEGFPLANTWPEALQSLYSLSGTGPDMDLDLM
>L1-5_VC_pol#LINE/L1 2229-6743  [Volvox carteri]
CTYAKCLRHVITSCRPPAGRLPTRQHLAGGTTIPLLPFGHWPGHGPGPYVMPRNRHSNRRAVQLLRIGSHNVRSLLGSGYNNASERTAQLIRQWARQRLDIVCLQETRVTAHRVPQARTILHNLSRAFHLGQWVSWWDPALDSRRGGGTAILIRSALLTSGALTFPGTQAQPTMSGDGRLLRLPICWGDHTFTLISAYLPSADPPAQRTFIQQRLRPLMADAGLHIWAADFNFVNNPDLDASTPSARRNDVNTTAEFNVTCPGMIDTFRLIHPRRRAYTYVHPAGASRIDRIMVSQALEMAVYGSDTASGTPADHRITHTTIRAANSTHTPGPGLPRTRLHFLDHDDLCANLNMWVNNTAESAPTHPDDLIQWWPGFKRALALSAGRLNQQARMRQLIGAADEAAAQAQADSILAEAEEGDASALPRAVLARSAQADAAHRAVAGVTRRTRYNWIRTGERPSPALTNQLRPPLATRRITALRRPNGTLCSNLQQLPNIMADYWQQIGAQPHTDPVARSRVLQALRARGRTCSPEEAARAGAQVVTAEEVQAALQAAAPGRAPGPDGIPVELYQRTNCAPLLAAVFTAMGELDRVPTGFLDGIISSFFKADDPTVPGNYRPITLLGTDYRTLARVLKQRLLPLFNRVIDTEQTAFLTGRRIADSVLLLQLLPALLHMERRTCVAAFLDFYKAYDTLDRDFLFACLDELGVGVGFIAWVRRLHTSTQSAAIVNGYLSYWVIIAAGVRQGCPLAPILYLAPAQALLTWLQYQQIGISLRDIHLAASQYADDCGAFLRRLADIPRFKAVMDVFHAASGQRLNNRKVELLPLGTFTRNTRPADLPPANAIGNHLIIPVTNLTHMANSVGNEQVADEVEQQPIVGSVVGDFRVLSVATTLGIRVADRPSLEQQSVSLSPVRNSLQLVAGMHLSAFGRAFAVSGYSISRVLYHLEFMGAPSNTSMNNLLGDCAAVIDRRQPPSVRDNAERRRAPGVGVAYMPFPPAIGGFGLIPLHEHLRARFACLSCRAILGMAGMLETNPMWTRVLLAILRHIHPAAHPLCLLAVRGDVRDGRVTTILGRPVPNDCPALTRILSAMTSLPQPVLLDAQHLAPGPWCYHIPLWGNPLLNDAQLDEHFGDLRNLRGLDTVGMAVRCHTAMSSTWNLVRMVGAQGLTEAQHFHCTNLFRTIVVRGILGLTPRHPLPASCQSGATAITRISQLIDRLPPQWTIAAIVAINDRNHEIPPPQEAWKRIVKSLGWRFGQVLLHFSQVTVKFATTLLMAPSLRTLDIKHEDFILDAVDIVLSPENLANTLLDFRRTLSRMWRLRWDNEHKEAFWRLALDGFPAFPMHRAQRQRGIPAAMCPCGVRMLCGDRRHHFWDCTVALALREALQNELEFPDLFNRANLWLGIPPTWICSCVWEVVCLAAISSLNLGRRLLFKEGLQTNMPISTPSLNRITYEVISDFWARLTAFAARDYLPKHWDHVPHNHPFLYVNDADMVACRLPIYNDEV
>L1-6_Cis_gag#LINE/L1 665-2104 [Ciona savignyi]
MHGQDGQVPELEITLTRSILIKLSGNVELISVSSFMEIFAEDAALHYLGPQVEGVITENFQQSEFLLTLKSIENLEPPNIEEEIKIINDKNLTFTGPNGSIMDVSAKVPSPPMEIVTLYPVPCLVDETRLRQLIKKYKWGKVDSFYFGTHRHFPNIKNGWLTIKMFDVNLNNIPKVMKVGGRWVTVTRPGESHLPLCRYCKERGHPQQKCPKKGWCNHCNTHGHLTRRCRSFPPTAGNYNGYPSQTRQINQNQTRYNTPPTTTETWTTVISRSKAKQQPKQTPIETSNPFSSIAPQETIDTFEENNSTIIQSGPDLSLPQRPQKTPKRNKQKPQSANSTPIQFEDIMLPTIKPRTPTSSTTGNIPTIYTTPPTPAPHHSNNLTEPXENLTSDPTNTNDNPGPSKLQPKSTTPTTSSAASTDNSPESACYIINKAHKEYVRNPNTNPPPYIQRTVKELRTQLFEFNKDNSPKKRRLEDTQQ
>L1-6_Cis_pol#LINE/L1 2184-5717 [Ciona savignyi]
MDGHEIDNQIINSYPLNIATINVNGLKCKINNVNNYIEXNNIDILCXQETHRVDNTTISRLRSLSPYCIFFNTIISNSTQHRCNHGTAIYVRNHISNSFTINHTILVENMIHKITLTNRNLQLNIINTYLPCGNLNRNKRSELINLINENIITSQYTHSIILGDFNMLLNPLDIKGNFDHRSKPDRRAWRTLEKDKSINDAFRKLNKLEINYSRITNTTATRIDRIYISKNLNSFATRYIHVRNFFSDHNHCPILSINIENSKKWGPSFYKLNNSLLTNNDLIDKMALFWKNWTYEKRKYSNILNWWDDGKQMLKHITIDYSYGKSKREKQNYXNAVSRLSXLQRQLETVSRNKXISILKHNINXYESSINTGAIIRSKVKFIXNEESPNKNFFDFEKSHQKKDTIFRVKDNEGNLTSDPKTTLKAIVNFYTDLWGNSPSTINPDNYLRCIDPINFEDELSILTQPINILEIETAINDMRDNSTPGSDGLTYLLYKKLFPIIKYDLEEVYNNIYLKQTLTNSMKTAIVKLXYKKGDKTDLKNWRPISLLNCDYKILSKIISNRFDLIINKIISKNQKCGIKGRKINDAMYNIQAAINSAKHFNHPLTAIAIDFEKAFDRTDPEFIIQICLKLNLPRTLINWIRIIYNDVNSRIEINGAFTPKIHIKRGIRQGCPLSMVLFLISMEIITRKLHYNNKIIGYRLNNIELKCEQYADDLTILSGHNSSIPEXFKELEEYAQVSDQKINLVKTKVISNDNLSIYTLRRSYPSIEIAETIKILGIFFAFSRECIDQNWDKYKNHIINTLRINKRRHLTLNGKKTIINTLILPQXNMVGDILPMNKATLQRINSEIYQFVWHPYKMEMIQRIKLSSSYKHGGLQFPDIKTKLDALKAARLYRLKHITKITELWHEWARFNLGSTMCSLNKLLYSNSLPNAAFPDPFYRDVRHAYYKLKRCDYNWENGKIKDFYNALIAQLTPIHNIELNNKIIPWKYINLQSKAIKPFFSNVDRDIAYKIARNLLPHGDWFRTRNIRPQHGDIIYIHDCKFCRNKDDNYSHILTTCNVISTVIDAIHKYANKISFKTYNRNDSLILYNKTDLAQKDEILLIKLLTITKCEIYYAKRKLDIQNKYMWNNDEFVRKILWIVKTKFKLYIRKMIVKYDFEYIYDKFKLLPDFNSYVL
>L1-6_DR_gag#LINE/L1  133-1050 [Danio rerio]
MATSKKTMSPQKQATGNKRLKTLDDDVASIVSHAIEAQQEALREMVFGMLTEAIKSALAPFNDYINENGTVLRAIKEEIGSLGKNMASITSKVDDLQGNLRKTKKDTNHCLSQLDQIQRKCTDLEDRSRRNNIRLVNLPAGMEGDDPIGFLQKTLPKWIPDLSGRSNPIEIDRAHRVYSNSNSNRSRAMIFRLLRYPDRQAILQGARKAKPTLPGGARLEFYADYSAATAQKRKAFSAVRSKLQQKGAETFLIYPATLKVSFKGQKYSFETPDEAEKYIEGLERTTSAPARRSLYPQLQEAMEETD
>L1-6_DR_pol#LINE/L1 1710-5474 [Danio rerio]
MVNLNIMSLNVRGLNSPSKRTKFLDYLRRKNIDVALIQETHLRIADVQRLQNKHYIPIVSSGYNSKKRGVAILFKRNHTFSIENLGSDNNGRMAYCCTNIGGKKLMFVNIYAPNSYDALFFPDITKTLLAYNEYSLIIGGDMNTVMDTVLDRSNPSIPMIQPQSSKALNWFTKDLNVSDTWRLLNPNVKEYTYFSPRHKSYSRIDYILLSPMIFSCVKNIEFLPQSISDHNAITTSLQFSTLTKPSRWRFNTLLLKNEEYISQLRSELTEFISINQNSVSNQDMFWAFIKGFLRNNAISFSARLKKNYLQQISSLEKRCGELERELEKKFATETQQKLKVERATLNDLLRQRTEYLMHITKHKYYIDGSKPSRLLALTLKKHEQRFNINAIKNSEQVLTSNPSDINKTFKKFFEKLYSSEIQTNTDHLEKIFESLNLTKLSKEDADNLDSEITLDELHNAVRDLHTGKSPGIDGIPGELYLVLWDLLGHIWLQTINKAITKGHFHKDLNTALITVLPKPEKDLFECSNYRPISLINEDIKIYAKVIAKRLQSVISKLIHPDQAGFITGRLASDNVRRVLHVIAESGKLKKPSGLLLIDAEKAFDRLEWGYLWYTLKNFNFGDQFIKMIQTLYSNPLARVTTVGIISDTFCIKRGTKQGCPLSPLLFNLSIEPLAQFIRQCKNITPIQLGSSVHSISLYADDILLFLSDLQNSLPNALTALNEFGRISGFKINYSKSVLMPLNPIGHNVTNNTNIKISTKVKYLGIELSPTLQLIPKINYMSIYSKVEADIQRWMRLPSSPPARISTIKMNILPRINFISSMLPLPPPPNYWKKLDSILNKFVWNGKRPRVKWSTLQKNKTEGGWACPNFKLYHWSFILLSVVKWFEPDMQCSWKEIEKDLIFPTRLQDFLFSGFNHRKCILRYGPILSYTLQIFKKVETYFPSRTTWHNHSPLWHNVNLLSGRQPFNQPSWANKGILTLKDINGEKSILDFQELVNKFNISPNTLFIYFKIRAALKAHKTPWGKDLHTHPIVKWIYNAPRKGTVSYLYCCLSNINAHSFSKERLWLSDMSRPNTTIDWETVWHNTFHASTNPNHQFIHFKTIHRAYLTTRIRHIIGLSPDPYCKFCEPQRPDTFLHMMWECPEVQKLWDSVLDILFKVTKICFPKDPILLLLNDNSQFPLNAKVRKFWLAASTATKKMLVQRWKPPHDLSVKHWLHSLLEILYLELSSARINHAKVDILTAWKIYICNVKEILDT
>L1-6_Mad_pol#LINE/L1 584-4782 via tfasty with ATLINE1_2_pol, 3 frameshifts and 6 stopcodons. [Malus x domestica]
MMGMRSVNIFRGGCLVLDDVGSLPSQSVLLLSMNIVVWNSRGSGCTKFQNNVTNLKQNHKMEILAICKPRISGTRAFYVVKSLGFPSFEIVDANGFSRGLWLLWDNSKVHIDVIGTTDQSISACVRGAGFNPWLFTFIYASPCIAKRRKLWDYLNGVADCHQMPWMLAGDFNEMLEVGDKLGGAPLCRIKDFKSWVDTNSLLDLGYVGPKFTWTNKKTLERIDRGLCNMAWRNLFPEACVFHLPRTKSDHCPLKISLQSTHVPNPLQRPFRFEAMWLRHDTFDELIAENWGNSHGSAMDKTCALVEPLKRWNIHVFGHLKQKKKKLLGRIAGIQKALCRGPNNFLLNLERELISEFNEILNQEAVFWHQKSRLKWLQDGDRNTKFFHLTMIVRRRRNRIEGLKNDQGEWIVDPDDLKSLVVEYFQTLFSHGQWSRQVTSLPKLFPSIHLDDIGSLNREIDHAEVKDSLFSIGGTKAPGIDGFPACFYQAQWGRCASDIVDMVKIAFQTHRLPHGLNSTLIALVPKIENPQRMLNFRPISLCCTLYKVITKIIVARLRPLLPELISPNQASFVPGRLxRDNILIAQEILYKFRKSKGKKGFLAWKIDLSKAYDRLNWSFISGVLYEIGLPESLIHLIMDCISSVKYQVCVNGELTESFTPSNGIRQGDPLSPYIFVLCIEKLSHIITNEVNSGQWKHVKASQFGPGVSHLFFADDLMLFADATPKQARVMKRCIEKFCLASGQAVNFEKSMLYCSPNTCANEAREISAICGSPLSDNLGNYLGMPLIQCRVSKSTYKGVIDKVQSRLSSWKSNVLSMAGRATLIQAVTSAIPVYAMQTTKLPVSVCEHLDKLNINFFWGDSQxKKKIHLCQWNLVCRPKCVRGVGLKKTAEMNQALLAKIGWRIHAKDTGLWAKIYEAKYLQGNSILDTKLHEKSDCSYTWKGILYGTDLLRKGMKWRIGKGDGVKFWKDPWVLNDPLINYVDANNFPEEDFPISYFLRDGWWDVSKLRYAFPENLVQKIISWPAGTIGAGEDKLIWGCTSNGTFTIKTAYNVLYDWxKKPVFYWFGIWTLKIPPKLKFFLxLIASRxVTTNEQRTKRNLTVDSSCNLCSWPLETITHILRECSRAECIWDILRIPSQLRNTFNLDLKAWLMANVTSKVMWSDKIAWNCLFVFACWYIWKWRNHQIFDVDFSLPSDPKKVIVGAASEWMDSLLKIDKPPSRMHVMLKWEPPIFGWHKLNVDGSRKMVSSNIGAGGILRDHNGDCLGGFSINLGQGQIIEAEVWGLYFGLQLAIEKGISKLIIEMDSSSAVLLLNQSVQDTFHPLATLLKSCRDLMRRIEHCELKHIFREVNNVADQLAKxSYNLDLGLYSFQFPPQWLMQHLMDDLVGAPMGRSIVINAMY
>L1-6_SBi_gag#LINE/L1 95-2563 LINE1-2_SBi_gag below 80% identical, but still left out because of poor quality.  [Sorghum bicolor]
MVTAVTQRPKPIHAAQPIHSKFWATSDAMDDSEDEDPSTPEFVQLALEAGYSIDELVAAEDALNAGNTSDKLKSAHSIVSNLVNRKITGGVPWQGPLPPPRISPPRTLGDFFAKASYRRSSVSHSPAASPELGSVVRDSMSTFSKNFEKQQGRDFRNQDPFPPLAPAPLTVNTTVCNGEFFSAIDSVPNKSRELDKFNRYQFGPGKFYRPTKGLCSLFLRTASRRSRKPSLSPPTAPSPRRRSFAEVVKGKGMAAQGGANGGGFGQQGGGRGGPGFNPGFNPGFDPGFAGRGGRGYGSFPHNRGRGSNFGGGRSGYGGYGGYGSQNNYGYQGFHGANRGRRPYYGGYGGKRGRGAGYGGQQFQQQATPNPTPMGGGNYGTGAHIADQMGHNLGAQQQHSTVPATGTKSATGGVPIAVTADNHLGSAVLGDPQPGHPSAGQELHQAPPAGLHKQGSKLELSPHCPVENKTTAEVPKDTVPHNPDNEPMNVDLPESSKGIKKSKGKPFCFRCLTKGHTSHECTAVLSCHFCCGEHVAKTCSYAKKTNLSALPYGYAVEGLGFYYIPVFSEFQKDKVEEKSAVVRVLEGSITAGMLAVELEKLLPGKFKWEIEEKGKDAFTTNFPSTVWLDTVVNWGPMVTKSFEGKIQFEKSSEEDVYKYEIEKVWVQFRGLPSEFREFPIIWAIASILGVPKSVDIKFTKKFGRSRMRVAVIDSALIPAFVDVVIGEFIYQLHFGVEQEAPEGEPILLDLDSKLEDEEPNEDDDPNDDDPKEEGNGDKPMDIDKKKRIRHHILQRRLVLVEQVSRIAPLLKLQKITVSLENQIQ
>L1-6_SBi_pol#LINE/L1 3153-6821  LINE1-2_SBi_pol 83% identical [Sorghum bicolor]
MKGIFWNCNGFADCKKYRFLNELTKEKNLDFIALSETGRANFPQSTLNNICAGRDYLWHCMAPRGRSGGMLLGINLLNFDIGEIEEGDFFVRFKIRRREDDFKFNLISVYGPAQVEHKSLFLSEIVNVCSKEALPIIIGGDFNIIRRPQEKNNANFNNRWPFLFNAVIDSLNLREIEMSGRNFTWANNLPIQTFERLDRVLVCTDFESKFPHTTVQALTREISDHTPLLFSTNNPSSNYQPQFKLELGWLLREGFCEMVKDVWQSTIVSGSPIERWQAKISRLRQYLRGWARNVSGVYKKEKETILNKLDALDKKAEIMLLTQQEVDLKHVLNERLSELLREEEIKWYQRAKLKHLLEGDANTKYYHLLANGRHRKTRIFQLEDGVNLITGDAQLKAHITGYYKNLFGPPEITPIELDETQTGDIPQVSELENEFLTQPFLEEEVRVAIFQMEHNKAPGPDGFPPEFYQVFWSVIKDDLMALFSEFHQGNLHLNRLNFGTIILLPKKKDARVIQQYRPICLLNVSFKIFTKVATNRLTSIAQKIIRPTQTAFLPGRNIMEGAVILHETIHELHSKKKNGVIFKIDFEKAYDKIKWSFLQQTLRMKGFSQKWCQWVQRFTEGGNVNIKVNDQLGSYFQTKKGLRQGDPMSPILFNIVVDMLAILIARAKEEGQVEGVIPDLIEDGLSILQYADDTVIFMSHDIEKAVNMKLLLTTFEQLSGLKINFHKSEIFCFGEAKEYEEFYSQLFGCVVGNYPFHYLGLPMNTRKLNNNDWKIIEDRIEKRLSGWKGKMLSVGGRLVLINSVLSSLPMFMMSFFEVPRGVLEKIDCFRSRFYWQNDQHKRKYRLAKWEVLCQPKSQGGVGIQNLDTQNKCLLSKWLFKFLNEDGMWQELLRKKYIKNKTLGSYVKKPLDSHFWKSLMNVKDSFLELGSFKIKDGSQTRFWSDTWLGNKPLKDKFPSLFNIVRRKDDSVAQVLGSTPFNISFRRNLVGANLLAWHRIVASVQDLHLVDQKDVFVWGLNASGIFTVKSMYAALINNGVRVSQDIWQTKLPMKIKIFLWYLKKEVVLTKDNLVRRNWSGDRGCCFCHFPETINHLFFDCVYAKFLWRAVHIIFGLPPPTNINDLFLRWTKLGTKKYNSLLLTAAASLCWAIWITRNEVVFDRCRPKSFLQVLFRGTHWLRQWAHLQRHDDQREQLNLVGQVLETSALHFFSSNGWLSSSYIGHA
>L1-6_XT_gag#LINE/L1 161-1060  [Xenopus tropicalis]
MGKYGPKPRTEAAARLERFAHGSQQPTEPASPPDSPQRQVSKDAQSEPSLNDIMGAVLENRTTATGQFEGLKIDISLIRQDMQAIRERTTEVENRVSTLEDQVAPLAQNIQLMQTQLKHALDKNEELENRHRRNNVRIVGLPERAEGNQPVQFIETWLRDTLGPENFSPVFIIERAHRVPARIPPPGAPARPFLLRVLNYRDRDAILQKAREKGPIQYNGTHVSLYPDFSPALQKQRASFQGVKRRLREANIPYSMLYPARLRIQDNDATQFFTQPAEVDRWLETKGPGNRRAPRSPRQH
>L1-6_XT_pol#LINE/L1 1766-5509  L1-6A_XT_pol 90% identical. [Xenopus tropicalis]
MATYNIMSWNIRGLNSKYKRSLMWIYLKRHSPSILLLQETHLVGQKTLALKKPWVGWTYHASFSTYSRGVSILVRKNLPFELSQIISDHYGRYILIACLLANKPLILANIYMPPPFTTTLLQHIGKKLADLPPAPLCIMGDMNQVMDLTKDRLHSNIQGPTNLAQWANSLGLSDIWRWKHPLEKAYSCHSLPHKSFSRIDIALATADILPLVEQISYLPQHLSDHSPLLLRLQWLPNTIDRLWRLSPLWLKHPDIASSSREAYIEYWEFNTGTAPQGIVWDASKAATRGSLTALISHERKKSKESITKAEEHLAETQRNHFHSPTTDTYEEVRRAEAALARESTIITKKALLYKTQHIFDKGDKNSKILAILAKQQQASIAVSRIQTETGNIVHEPYLIAETFASYYQKLYSSTATYTAPQLRHFLDSIHIPKLSPTERAWLNAPITLEEITTAIQSLPSNKTPGLDGLPPDWYKALNDLVTPQLLTTLQAAWDSQSLPPSFAEALIVVIPKAGRDPTLCSSYRPISLINTDAKILAKVLATRLTRAVQDLIHPDQSGFMPGRATDFNLRRLFTNLQITHTNSGARAVASLDSEKAFDSIEWEYLWEVLRRFGLGARFIQWLKMLYKHPIARVRVNNTVSPAFSLHRGTRQGCPLSPTLFALAIEPLAITIRNNPNIKGLNFANVTEKVSLFADDILIYLADSGTSLSTLLETIQTFGKYSGLKVNWDKSQLYHIDPAPVAQAIPNTPLKEVMSFKYLGIQVHTDPNTFRQLNLDPLTDSLSLALKNWEKLPLSLWGRVNIIKMIYLPKLLYILHNTPYAIPRAVFKKLNTIINPFIWANKPPRISWEKLTSPIGKGGLGLPHFYFYYLTSQIYYLHWCFAPNPYNPNMPLQASILHSLEGLGTYPYRQVSDMTALPDVLKTPHQAWTTALKLLGCPLPYPSPHLPLWKNSLLQQLYDLPDVIYWARLGIKKLSDLLLQDQFPTLQNLQERIPGQRIQLYRYLQLRHAFQAQFHSLSLTQETTPLEETLYSPTPKKLLSNLYKMVMESLPPPFNRARQLWHQAIPNLQEDQWEEAIDTAYDYLISIKDRLIQYKSLHQIYITPLKLLKIGKRQNDLCPRCDTPGANFIHMIWACPPINRFWKDVMGTMAQELGTPRIIDPVVCLLGVIDDILPTNAARIRFRTLMFYAKKTVIMHWMGNNLPSLNFWRQLVDSALPLIKLTYETRGAMDKFEKVWSDWCNPDPQGQQP
>L1-7A_XT_gag#LINE/L1 113-1084 L1-7_XT_gag over 90% identical, [Xenopus tropicalis]
MPPKNPPKAKSEGVQKFFSKTQLQDGGGESDTTMPEILAHPLQPPAESAEPTLHTLMSAIVDSKATLSTKIADTTATVTTKIEELRVDLSLLRQDMQVLRERTSEAERRISTMEDSLSPLQRQVQQLQREQANLIAHVDDLEKRQRRSNLRIIGLPEGVEGQNVATFTESWLKDTLGPETFSPYFAVERAHRVPNRKPPPGAPPRPMLLKLLNFKDRDAALKAARLKGNIICDNAKVSLFPDFSTAIQKRRSTFTEVKQRLRNSNIKYAMLFPAKLRIIDGDNTLFFDHPEAAIQWLENKPRAHGPQRSPRRPRNEVLPEMDQP
>L1-7_CR_pol#LINE/L1 836-2443 [Chlamydomonas reinhardtii]
VARPPGLPSDCVALPPRDGGFGLLPVVEHVRARHAVLAVRWLQHMHGSAAGTYVPPWTAAATALAVQQLHTAAHPLCVLTMQRAAGGVGPAADGCAIFGQPVAATCPALVRLLGALSYLPPVTILRPAVLVPGPWCFALPLWGNPVLPCAAGLQAGGLERDFPALMALPGLLTLGTAVRCWEALAAVRQLVASKPAGALGPRLARRCTIQYKRSVLRPILRITDMARVPPELQSGPDAAAQFSALLARVPAAWRVAASATLHAPGGAASAPPAPQVWLLLAQSLGWRHGAADVPLLTLTVKQATQLQLAPAYDALRVRHLAFIQEAYSGAAPPAEAIHALRAALARLWALVWEPRHKEPLWRLAVNGFTGFGMLAAWAADGRVEKCPCGTQMTAGARVHHFWDCVVAEALRDVMREHANVDITRNQLWLVQAPPGLSQAVWDIVCLAAVAALEYGRQRLYACRDAADRTAEVAVVRRIGVEVIADFWSRLAAFVSLRRPPRRWDLVPNQHPFLASDDVGGVILVGPTADSPPASP
>L1-7_DR_gag#LINE/L1 178-1094 via tfasty with L1-1_DR_gag, 1 frameshift. [Danio rerio]
MAAPGNKRGGKETRANTANVSSGDSRGTHEGEPLSAEMFKQSLESIKNDICIKIESAISGLQSDINGVKEELTSAVATIQQSLGSQEERLRAVEDSATATSNSLRYLETTVAKLQTEVTALSLKCEDLESRSRRNNIRLIGISEGEEGNRPTEFVSNFLRDLLNMEEEALLDRAHRSLQPKPKPGQPPRPFIIRVHFFHIREQILQAARQEGRLTYKGNIWLSGYNLFPDLTANEAKKRAAFGEVRKFIRNVEGARFGFRHPARFRITLPGNTEQLFTDPLKAMEYVKNTLAADAIGTKTSVMPE
>L1-7_DR_pol#LINE/L1 1666-5299 via tfasty with L1-1_DR_pol, 1 frameshift. [Danio rerio]
INFVSWNVKGLGRPTKLNKVINHLHNLQAKIVFLQETHLNVSDHTMLRRKWVSQSFHSLFTSRARGVAILIHKDIPFNTSDVLADRNGRYIIVSGSLFNTPVVLANIYAPNFDDDNFFIKFLSLLPNLHSRYLIIGGDFNLCLNPQLDRASLRGTALSKSAKIINSFLNDYAVTDVWRFLNPLTRGYSFFSYAHQTFSRIDYFLIDNKLLPCVQHCTYNAIVISDHSTLTLGLKFECKNVQRPLWRLNVRLLTTEDFVQIISSQIDFFVQVNSSLDITHSTLWEAFKAYIRGQIISYVSFERNKYKKSIADLTDQISQLENQYVNSPSPNILKEYLLLKADFDTLSTVTAEEILIKSRHAYYECGEKAHRLLAHQLRQSSASHIISTIKANDILLSDHCAINNAFLEFYQSLYSSEQISDQVDFHNFFQDLSIPRISSEDMKFLDSPISLDEVYNAISAMQSGKSPGPDGLPAEFLKTFSGQLAPLLLNMYNESFDLTCLPQTLREASISFILKKGKDPQLCSSYRPISLLNADVKILAKIFALRLETLLPKIISSDQTGFVKNRFSFFNIRRLFNIIYHPMSLSVPEVLISLDAEKAFDRVEWNYLIYALKSFGFGANFISWIRLLYKAPLASVRTNNISSAYFQINRGTRQGCPLSPLLFAVAIEPLAIALRQNTNIAGIIRGGQEHKVSLYADDLLLYVSDPSKSLPHILKTFDTFGRLSGYKLNLQKSEIFPINNAAREFSFTSFPFKISNSFIYLGIHLSNAYFKLFAENLLPLLERVEQDLKRWASLPLSVAGRINSIKMSFPNFRCYYWASNIRPILHWLYEDPGADALSWIAIESTSCLPSSLAALVYAPLSFPYDKYTKNLMVRSTLKIWKQIRRQFGWQTISPKSPIHSNPVFSPSIIDKSFASWHARGVKEINDLYHEGIFSSFQQICEKFNIPNKTFFHYLQIRDFVHKMFPHFPVLPPSSSFDNLLERPTIWKGIISSLYYKIMAPTNTSHSQIKSVWEDDLGITISDEDWESVLYRIHKSSVCAKHGLLQCKIVHRVHWTNLKLSKHFQHIDPACNRCNFTPATHAHMFWSCIKLNYFWDTIFKIISVFLGISISPCPLIAMFGILPTTYNLTKIQSDSIAFIVLLAKRLILLKWKDQKPPTPTQWIRDVLFFVKLEKIRLSRGSSNQFKKTWDPFRKYIQEHVLLSTTDQILVPAN
>L1-7_Mad_gag#LINE/L1 40-897  [Malus x domestica]
MTAAPNLHSGPRLPIVPWSFLGSDPDVATEKPAPSKQSFAQLLKQPVVSLSQLPIPCEKGGYVSVKISEDAFSKGLDRCKQSLIGRVLLPKGSTPIQMVDLRNKLETIWGFKAWRLIPLGKGFFSLRFDHVEDMRRVWAVGTLNLNPGLFRISQWSPNFSPSKQKSTHAQVWIRLYDLGLEYWEPQTLMEIARGVGVPIQLDRVTAFMNFGLYARILVDIDLSKKPPTSLMVERDSGEVLFVEIIYEKLPDFCSVCGNIGHLPATCRVAARDIKRGHVVEKEGARS
>L1-7_Mad_pol#LINE/L1 1653-5807  [Malus x domestica]
MKTIYWNIRGLANRPTRQALRSLVRKHSPDFLCLAEPMTSTMKIRPFFWKSIGMHFLGVNDRGQRLPNIWVFHTANVLSPTVLSTSSQHITIQFLVAGTAHCITFVYAATTVVERRPLWLSIAQVCAGFSGPSLILGDFNAVLGAHEKMGGILPRRIACEEFQAMVDTCGLVPIDVKGSPFTWTNGRGISSHIEMLLDRCFCSTAWLDAWPITNCSTLVRHSSDHNPLLVSFQKFAAQGPTPFRFHRMWLDHPDFINLVKNSWQSIQVYGCPMFILQQKLKLLKPILRHWNADVFGNVNVAVDNAREALEKIQLEISTEGFTDERHGAELQAHSTLSHALLVQEKFWQDKTRSKWLRDGDRNTSYFHTLAKIRRTRNFISSLRIDSELVEDVEILRNHVVEHFFNAFHDDGLAIDTGLVTRLIPPLVTTPENDTLLAIPTLEEIKQTVFSMNPDSAPGPDGFGGYFFHACWDFVGFEVSLAVQDFFKTGYILPNLNSSFVALIPKVQEADSISQFRPIAMANFIFKVITKILADRLALVATRIILPNQYAFLKGRHISDCILLASECVNLLDNKCFGGNVAIKFDVAKAFDTLNWDFLDRVLRAFGFHDTFVQWVRVILSSARLSILFNGSPVGFFGCSRGVRQGDPLSPLLFCLAEEVFSRGLVDLVNSGKVKPISSPRGVTAPSHILYADDIMVFCRGDKRSLMNLMHFIEEYGVNSGQRISKVKSRIYIGKSASVRRLRILSWLNVSEGELPFTYLGAPIFKGKPKRAYFQALADRIRSRLSQWQGHSLSMAGRVTLVKSVVVSMLSHTFSVYSWPPTVLNQVRSWTRNFIWTGCADSCGFSIVAWKKCCVPLNEGGLGIRNFSALNKAFLLKKFWDILVTSSMASRFFQGRFFNCLGQPCSTYKSSSIWPGLRPLFSDIFHGSKWVIGNGQNINFWHARWLDFPIVDRLGIPPDLCKAFRAKVSDFIVDGCWIPPPTLHSWLAPIWDDISSIGLPSKYGIDDKMVWLSASNGDLSLSLAYDFKRNKQPVVQWDRWVWQSCFRPRNSVTLWKYLHGKMLTDDLLQRRGFAIASMCSLCCEGMETASHIFFECSFARQIWSTVLELFRVQYLFQDIFSFFHYPLQQGFGTQVQLLWWGMIGVGFYSIWHARNAVRFHEEVVSINYVVRSIKCQLLEIDSLNSGCMKNYVEELCILHSIGVRGRPAKAPKIIEVLWRPPSQSWIKVNTDGAARGSPGVAAFGGIFRDFTGNSLGCFAGSIGLASSLDAELRAVIHAVSLAWDKGWHSLWIECDSSLVVHLLSSSSPSLTSIPWRLLVSWHNCRVLLSSMQVQISHIFREGNQVADCLANYGVDHPGVHWWDSCPPCAAAAYSHNLSKLPCYRFC
>L1-7_SBi_gag#LINE/L1 357-2302 via tfasty with LINE1-38_ZM_gag, 3 frameshifts and 1 stopcodon. LINE1-1_SBi basically identical and in even worse shape. [Sorghum bicolor]
MNPAASEQHSPCIINWTDDVARAEDDLAHAVIVTVIGDQPLAEANMLEAAIAARMDVEAGSLVLRRASASSYLLVLPNLSLVERLVGLRQPLRASNFSLLCKRWSRLAGASGKVLPWLIDVELRGIPTHVWETSTVEHLLSPHAWIQQVHQDTIGLVDLSVFRCSAWCSDPNLLPRSRELWVTEPPVAAMEDPPVKSVLEYHIDIRFSVRIQPGGPTPSPPPPPGDSEDQDASARRRRRMRSPSPPHPSGPGPAADGPGASGAGMSNSGGAGRGPGHRRRDTATAFLEPVCDSQAACVVPLSSQAMSSAALTPLWPMVKSxLRFPPRRRWLAEARQLPLPPPSPRTRQSACLMEKDLVLPRAGGGPRSEDYPDADPDLKSSCGDVEVGFGGATVLPASPRSPLVFHPAEATVEPASPQSRFCPHIGVQPASRLSAAALDPARAPKAAVKPLQVYSRRRRCLHAYGPDGPVVAPPAAVEGVPAQVASSAVQGANSSTPMVGVGGPSSLQDGVADSATPSPAGSPPPLPDARMTFINKLARRTAGLLPVPAINKRRSKTLPPGATPRRSRRLAGAKVEFDLNDLERRTKKKAMRTLASLSENEGIDQQALDEYAKLFGQPLSDSHIQALAALFNWSLPEDLGQGEEGEXLA
>L1-7_SBi_pol#LINE/L1 2347-5903 via tfasty with LINE1-39_ZM_pol, 7 frameshifts. LINE1-1_SBi basically identical and in even worse shape. [Sorghum bicolor]
LMDPAKILIWNVRGLNSSSRQDSLRSIVDSSRSDIVCVQETKITGMTRRIILSALGSDFSDFAAAPSVGASGGMLIAWRRHIGVSGARRVDNHSVTIQFAPEDGQAWWLTCVYGPQGNEDKIQFLQELRDIRAACQGPWMIAGDFNLIYKDEDKNNANHNRAMMGRFRRFINDLALKEIPLHGRKFTWSNQQDSPTLVRLDRVLCTVDWEDKFPNCLLQSLASDDSDHCPLLLGLRDNISGRRRFHFESFWPKLDGFQEAVSSAWASIPAGPCPFLTLDKKFKAVTKGLQSWSDRVVGHVNFQLALAREILHQFEIAQDSRQLSPGELWLKNNLKKHSLALASLKRTIARLRSRINWLNDGDANTKLFHLHARHRKRKNFIGKIVAGDQICTSHEDKAAAIDDFYENLLGTCTAREYTINLAEVGMPHDLADLELPFTEEEVWSTIKQLPSDKAPGPDGFTGRFYKACWPIIKDDIMAAVSAVWSRKFVNFGTLNSAYITLLPKKDGADQPKDFRPISLVHSFAKLITKMLANRLAARLQQMVSPNQSAFIKGRFIQDNFMMVQQTARFLHQQKQPRILLKLDISKAFDSVSWPFLLEVLQQLGFGQIWRDIISGLLSSSSTQVLVNGVPGDHIHHRRGLRQGDPLSPMLFILVMDVLGHMISKAANEGLLQPLSTRVLQHRISIYADDVALFLRPEAGDISIVLGILNLFGEASGLKTNLQKSNVLPIRCGDSELATIQNLLPCPLSDFPCKYLGVPLSLRKLTKEQVQPIIDRIADQLPGWKADLMTRAGRRVQVQSVLTGMLVYLAMAFDFPPWAIKAVDKIRRGFLWRGRKDAKGGHCLVAWVKVCRPQELGGLGISDLKTLSWALRMRWVWLQKTEPHRPWAALPIQVPDQVRAFFSVAVASEVGDGANTLFWTDRWLHGQCIADLAPRLFAVVPKRRVKRRTVQDALTNQAWISDIQGARTVGVLVEFLQLWDVLMDFQLQPEVEDRHIWRLSSNGQYSAKSAYDGLFLGSTLFGPWERIWKSWAPPKCRFFLWLVAHNGCWTADRLARRGLPHPECCPLCDQEEETIDHLLVNCVFAREFWFCLFRQVGLQNLSPQSPDLSFHAWWEKVSSSSEVGLMRQGVNSLIILGAWTIWNHRNSCVFDGAAPNLAGALVLAGEERRLWSMAGARGLSFLAALLPGS
>L1-7_XT_pol#LINE/L1 1508-5224  L1-7A_XT_pol 90% identical. [Xenopus tropicalis]
MTSISLCSWNVRGLNSKYKRAQLFTYLKKYSPTILLLQETHLVGSKILALKKPWVAHHFHSPFSSHARGVAILVRKNVMYETLHVCLDVQGRYVILQCKINSTPITIVNLYNPPPGNLDVLTTIFSKIANLPPAPLYIMGDFNALLHPNLDKLNSLNHTPTALANWAINVNLTEIWRWKYPNTTQYSCHSATHKTLSRIDFAFASPEALALVDDITYLPRAFSDHSPLMLQLRIGQIPSSKIWRLSPLWLANDMVKERNASEYKEFWENNNGTASIPTCWETSKAVARGNLINAITAARNTTKQICKEAENQFNIAEQAHAINPNAETHTNLTKAQQQLELTYTTLTNKKLLYTAQRIFDQGEKNGKTLAYLAATANSVTVIPRAISEAGNVVTKPQDIMQVFYEYYATLYKSKTTQSAQTIADYLAKLPIPKFDRQQTNYLNNPITKQEIIDAIQALPSNKTPGPDGLPPEWYRSVIDDLAPQLLTMYEEAFNTQQLPPSVYSALIILILKPGKNPEQCSSYRPISLMNTDGKILAKILANRLIKIITAIIHPDQSGFMPNKSTTCNLRRLYTNLQIAHENSGSRIIVSLDSAKAFDTVEWPYLWETLKAFGCGPNFITWIKILYKAPQAQIRVNNLISPPFSLHRGTRQGCPLSPLLFAMAIEPLAIAIRHSTNISGFRLHNIEERIALYADDILLFLADPHNSLQEILKIVQEFGSYSGLRVNWDKSQIMPVDTIPIVDRPTTNQLTWADEIKYLGIIISPLCSLFQEQNLEPLYTNFTSTTATWQNLPLTLWGRINLFKMIFLPKFLYFFRNAPTTIPKKFFSKINGTISSFLWAGKQPRFSWKSLTAPLGKGGLQLPDMYLYHIAAQLSHLHPWFLPDAEDPNMTLIASILGSLEAMTHCPLRRLCDSNPLPPVLLATYQSWQTARKLTKSTPYLLAPHTPLWGNSHFMHFRYLEDFIYWPKMGIKTLGQILHKGTLMSLPQLSEQLPDQRIEQFRYMQLRHAFKAQFGSYQIKYQNYPIDSILRNPNPKKLVSNLYSILQDTIKSPFERALVKWRQSTPTITDEQWEEATDSAYNFLISTRDKLINFKILHQFYYTPARLNQIYSDRTSACPRCQEAQANFHHIIWSCPQIQKYWKGIMKCLNDNLAIPHILAIEFCLFGVIDEVIPLNKTRIXCRSLLFYAKKNIILNWLKPTTPTISQWLNLVNKMLPMIKLTYEARGIPDKFDIEFGAHG
>L1-8_CR_pol#LINE/L1 1-1300 via tfasty with L1-7_CR, 1 frameshift. [Chlamydomonas reinhardtii]
TPPPAPGDWCWAAPLWGNPLLPEGDHTRRPGLEAHHTRLAACRHLRTVGDLVQALTAAAAWRATRPVGATGGVAWEEWVRQHLDPETQLREQPALEGLNSLAADIPETWLAAARAVQERLQAGLGPAPPSESAVVRLIMPCLGWRIPGMQQPLALEKLSVRVATVMQLGDVGVARSQLHTAYAAEARETPPAAPPHTTLDSPLRRLWRIRWENAHKETAWRVSIDGIGIAGNTHLTHAPGPVPCGCGVTPTHSPRLHAFWQCAVAQAVVQQLAAQLAAPPTREQVWLFEAPTGVQQAVWDVVAMAALAAMERGRCALYAARRRGLANAATAPLPQQPLQQGQLPQQQPQQQPQQQQQQQQAQIQTDTQQAIDTAVIDLWGRLKAFTALGVPRKGWDQVGAQHPFLRVVNGQLRCHTGMNAEQPAQAITDSDED
>L1-8_DR_gag#LINE/L1 1-873 may start frm a later methionine. [Danio rerio]
MTSKFTSKARAAKQGAMASDGPAEIREKDARLGHVTTPPGFAELQAALKAAMDEMARFSANLSTLQADVTSVKTTQFQMKADAAAMAQRLDEAEARIGVLEDENERLQQMAEKSVKECAELRDSVSDMVNRERRMNLRLIGLKEKSENGNLRECVRLILSEALDVDISETELQRVHRSLVPMPDENKPPRPVIMRFHSFLERERVMAAVRLKVREGGSIKWRSSKISLFPDMTRDVAEKRRRFTAVRKRLHELDIRFTLAYPAVIRFTWKGQRVSFDDHSKALELLSEKD
>L1-8_DR_pol#LINE/L1 1248-5063 [Danio rerio]
MHGTAKYLKIISWNINGSHNPVKRRKWLGYLKSKDVDIALIQETHMMGTEAEKLKRDWVGQVFHNSYNSKRNGVAILVHKRVNFVMIKQKKDEEGRFIWLEAMVDDQKVNICNIYAPNKEDSVFFHTVNKMIGGQAGNQLIIAGDFNQVQDAYLDRTTYHKNMPRDRLAIQLMMEDLGLVDIWRLVNPREREYTFFSHNHKSYSRIDYFLVSGDLVESVVDCKIGVIALSDHAPVEMTLDTNSRTIKQNRWRFNISLLQDLNFSTKLGADLKEFFEINVGTTERLGTVWEASKAYVRGNVIQYASLVKRLNKEKVKDIEARIKVLDRQLSLKFTDSILKQVCDLKYQLNDIYNRKAEYAMFRMRTAFYESGEKADKLLARQLKQKDASFLISAIKNEKDEVVTANMDINKVFEKFYSKLYEAESSPDCTKYRDFFSKITLPTLSSDQLEMLDAPIEESEIGAAIMSMKAAKSPGLDGFPAEYYKKYIDIVAPILEGVYKETLLLEQMPPTFNDALITLILKKDKDLYDPGSYRPVSLENVDCKILSKVLALRLEGILSNIVHSDQVGFIKGRSSSDNLRSLLHLIWQSRNENVPVAAFSLDAMKAFDRVEWGYLTYTLQMFGFGPTFLKWVKVLYSAPRAAVLTNGIISPFFKLKRGTRQGDPLSPLLFTLFLEPLAVAIRNDIRVNGVHLGEREYKCFLYADDILLLLSNPSTSIPAVMDTIEHFSQISGYKVNWVKSEVMPVSVGCSLADVSAFSFKWIPTGMKYLGIRLSRDLYDVVQMNITRMLQNVSTNFDKWKVLNLSLWGKVNAIKMMVSSRINYISIMIPLEFPLSIFKQYNQLVKDFLWEGKKPRISMKNMFTTRIKGGLALPNIELYNTAFEMIKICKHWSGDNVEGISWIEIEKTLTFPFSVIDALSQKSLYSIMNGEVNPILEHSQQVWKKIHKIFNLSHYKQGYSSLWNNPAIKIGKKTVYWKDWCKKKGLKTVDDLYGQGALYSFQELKDKFNLVDKGDFWKYIQLHSSIRTVGYKPGAEENVLLGFLNMPKSMQTTSFVYKIAANNMYGKSDHLKIIWEKDLEVEFEEGEWEAVVSGRGGTVRDVRSKLIHYKIINRYYWTPVRLHRIGLKENNHCWKCGQSVGTFLHLTWSCHLVAPFWTRVIQNLEKWLGQPLPYSPRVCLLGDTSTLQNGISKTQAGLVVAGYIIAVRLVLRNWKNSDTPSFKDWIELMTSTASYMNVCWQDFRIPPIPLIRNGVAFCNIWRAHKKKIEKLSI
>L1-8_Mad_pol#LINE/L1 10-3852  [Malus x domestica]
NLHNDKVQFITFVYAYPQKHLQANLWDQILAHTPTNHPWCLIGDFNNIVDSTEKLGGCSNTTTYMNNFINFLNRGDLISLTASGVPYTWTNGHSDNTRIYERLDRGVANPQWLREFHDFSLHNFPIFGSDHSPILLTNNVNPVRKGSYSFKFEAMWLRHPNFRNFVKSAWTCTNTSRPQEKFVACAGTFKYLVRKWNKETFGNVKDRKDKLLTSLCDIQNKIMRDQDNSISMDDEVKIRSELNRVLQEEEIMWAQKAKVKWLQLGDKNTKYFQTVASIRKKRNEIKSVKDSNGFWWNYGEGLEQVFVQEFKLRFSCDSSPSQETLATMVDIITPCIDHTHNMQLLECISDEEVWEAVNSIGALKAPGPDGLCAAFYQGCWEEVKDTIIPMIKDFFQNNSSLRFINHTNIALIPKVDNPETVSNYRPIGLCNVSYKIITKIIIKRLKPLLDLCISANQGAFTPGRSIHDNILIAHELFSSFKVKKGKTGTMGVKLDLEKAYDLLNWDYIRYVLIRFGFNEKWINLIMECITSTSFSILINGSPHGYFYPKRGIRQGDPLSPYIFILCMEPLIRHFNRLASTPKSHVGILSSLGGFRISNLVFADDCLLFARATPKGARNVLQILEMFASAAGQQVNFHKSSIYFSNNTINQDRNNIVNILSIQHKTTIGKYLGIHNIVFWKDLVNEIELIKRVKQKLAGWKGQTLSKAGRLTLINSNLTGMPNHVMSCFKCPNRVTTKIDKECRDFFWGRNTKLRPMAWKKVCSPKNQGGLGIKRIDHFNNACLAKLGWKVLTNKENWWAEIVKSKYLRKSDFLNSKIKQNYSLAWKGILSNRNIIHEGMRWIVGNGEDILFWTHQWVFPYPLFHLIPVNDRNNIDWNLKVSNFIVHNSWDSIKLATVVDGDIIRKICRIPLPLQESKDKLIWGLTNNGNFSIKSATWLQNRNNHSSNRLTLLKKMWKLTIPPKVKMFAWLMIQERLQTRKRLSRFVKNIDKLCPLCNTAEEDQCHLFCNCVFATKVWSSTFGXFNNGNISTNDNFFDWMESLSSNDKDGLSDLSKVILNCWQIWMERNNLVFRSVPPVPARCVSIAGSVGSAFLKANGKCDPNEALPISSFIKWHPPDRHDVIKLNFDGSVSNNCAAAAFVLRNSNSQVIGAGALNLDGTTISVAEAMGLREGLQCARRKGFTKVMVEGDSKLIIEAVQGHWGIPWRVSSIINDIRILARSFSHVDWKHIFREANFVADALAHLGLSLSNPHYWDFCLPDVALPAFNFDCIGNGCTRGFVL
>L1-8_SBi_gag#LINE/L1 73-2241  [Sorghum bicolor]
MVNENQSIQEEGSKVSAGLNEQNDRPQFCPRCGRVGHIASVCPNPVICTRCHLEGHVARVCLTKMPWEFISPFCGFSAYGQGFHVIESASTEEGIKDMSNVALVTVTSGQADARQIEREFKMKAGPNSTWRWYAKRISEGKYQMRFPNSQNIDDLAHFTEMRMRSAPDVVIKVDKWNPSTGSKGPLDVAWFRITNIPVEKRSYANVCMVASKVGLPLEVDKDSLTKNDYVRVKIGCRDVTKVPASVDGVLDFHFYDYFFQREVPQDGYTDVSGTKWIRNERDQAKDDFPSPKKQRMEQAKQAGQGSEAGPSKNYDAGKGKQMTNVISENVQQQQHCSEGDSEEDSFFTGDLIAPGADHLRFGSFNTLKLGKVTVNEYGSNFMKYKQDSLVTIETKRALFENKKSDIFQLEDFGSEKKLSTILEDMGPVMVGRAISMSPVKGSQGGPEGDQSSQEEAQHKVQEGQEQLAVVTEAAGKEVGVDDNTQDKEQGASGDQISIPKEAGQLMKVDSVDLTNVWEGYSNEGLAVQGKDQEISKDEWPKWQEVRQSKRIRANATFQRKINDQVISDDHHEVEKEGIIATHSNSFAILSNQRISDLASKMGIHTHSISFEKINMLKDLENARIDMVNKSEGAVDQSKCLEEENLPLEDQNILDWQSDSSDEEQLTVIDSIRKNKSGRKGKKKXSSNNKKHPLDVSGKLKGDKSKVSPRFNLRDRNTIKKVVK
>L1-8_SBi_pol#LINE/L1 2241-5921  [Sorghum bicolor]
MIGIIWNCRGVAKKGLGSYVKELLWDHKADFIGIQETMKKSYSEKFFRKIDNNKDFSWFWTPSNGKSGGMLSGIRKDKFDVESFECGEYMIIANVFDKSVRKNWSLANVYGPAHDDFKDSFLTELSSFCYKAKHPILLGGDFNIMRFSSDKNKNFNDNKYSCVFNQIINSYDLRDLPLSGGKFTWSNNRKNPTLEKLDRVLISSSWENEFPLCNLRKIPRYMSDHNPLIVRTDNSQVIGARPFCFETAWLRHVDFKEKVNEIWKKKVTAKSKIDAWCIKMDRVKKFLKGWGQSLKGHTRKYKNILKEELEKLEKLEEDFLLDAENLNRKTFIQSELWRIMEEEEIYWHKRSNNNWLLKGDCNTAFFHRVANGKKRKNTIFSLNHKDQVIEGDDALVEHATNFYKELFGPSTSSGFYMEPGCWDSREKVNEQDNEELEKPFSELEIKDSVFSMEKNTAPGPDHIPVEFYQHCWDIIKGDLVDLFEDFHNSKLDIGRFNYGIITLLPKVKEANNIKQYRPICLLNVVYKIFTKTLMLRLDKIMGKIINRSQSGFLKDRNIMDGILALHEILHDTKIRKRDGLILKLDFEKAYDKLNWDFLQDCLRQRGFGSKWCDWIKLVMNSGTVSVKVNNSTGSYFKSGRGVRQGDPLSPFLFNIAADTLAKMINLAQRNNLIKGLVSEYIENGIAVLQYADDTILCIQDDKEQASYLKLLLYLYEDMSGLKINFTKSEVIMVSQEESKSLEFSNMFNCSVGTWPIKYLGVPVSGSRIHIADWLPICEKIMKRLDGWKGSTLSLGGRLVLVNSCLSNLPVYAMSMFWLPKTVLERMDTARKKFFWQGGSMKKKYHLIKWIKITKPKSKGGLGIKDLRRMNISLLCKWWWKVENGEGIWQEIVRKKYLKKGMICMLNKNPKNSPVWNDLLKVRHIYLKGRTMRVGNGKSTSFWHDKWCGLVSLADKFPELYQINVEQKCSVEEMKRKNWRPSFRRWLHEDLQNQYRRLLDIVFRYSLNSDKDYARWDWEKSGIFSVKSTYKHLCRHDYGLNFSRIWKAKLPLKIKIFMWLVIQNSILTKDNLGKRKWKGNKSCAFCSENESVQHLFFECSTAKYVWSLLAHSLGAVCRPNSLEQYWTWVQNILPQAPSMHTVGLAAVVWAIWRTRNNVCFNKKKMRSPTEIVCLICSFLAYWTGLFKEDLKEQVIQGAEVVKSTALFFHNQDMQARAHDDLQMVPFAG
>L1-8_XT_gag#LINE/L1 442-1338 L1-4_XT_gag 90% identical [Xenopus tropicalis]
MGKHSQKQKPDAAARLERFARTEPQDSQSTTTGDSLPPSPHSPEITAETPQPTSSELLTAILESRTTTTTQLEEIKIDISLLRHDLQNIRERTTEAEARISTLEDTVTPLPNDIASIKQQLQQALDKSDDLENRLRRNNVRIVGLPEKTEGQHPEIFIESWLKQTLGNETFSNAFVVERAHRVPTKPHPPGGPPRPLLLRMLNYRDRDSALKAARLKGPIIYNGNTVSLYPDFSPAVQKQRATYTAIKKRLREAQIPYSMLYPARLRIQDGDRVQFFNTPTEADEWLNHKNHRRSPPRN
>L1-8_XT_pol#LINE/L1 2145-5873  [Xenopus tropicalis]
MADITLISWNIRGLNDKFKRAQMFNYLKRHPPSILLLQETHLTGQKILALKRRWVGHAYHSTYSTYSRGVSILVKRSIPFNLIAVKTDHYGRFIIVHCTIANFPLIIVNLYIPPPFTITTLDIIGKKLADLPTVPTCYMGDFNALMNPQLDKLNPPFPTGNKLMLWAKALGLIDAWRWKNPNQKVYSCHSTTHHSLTRIDLALVTPELLPKITKTQYLPRALSDHSPLSLNLNILGTPQANLWRLSPIWLKNNTVLESATTAVTEYWETNEGSAPPQIVWDASKAYMRGQLSSAIKKARLESKAQVVEAEKDQEEAESAYAANPNPTNYSKLVDTHHTLAREQTLLTRKAQLYTHQHIFETGDRSGRTLAYLAKIQAPSTAIPLIVDSDGTHHSTPQEIAEAFGTYFKTLYTTRATYSEAEIQQHLSNIPIPTLTVTQRGTLDSPITKQELQQAINSLAPGKTPGPDGLPADLYKSLTDEITPHLLNTLTIATQNFSLPPSFMEAIIVLILKPQKNPHACNSYRPISLLNTDAKILAKILATRLAQVMPELIHPDQTGFMTGKTTDINLRRLFFNLQTIHDNAGSRVVLSLDSAKAFDSVEWTYLWAVLSKFGFGPNFIKWIRMLYHKPTAKVKANGITSNPFPLTRGTRQGCPLSPLLFALAIEPLAILIRQTTALEGWRLGPLEERVSLYADDLLVYLADAGPSLTTLANIITHFGKLTGLQVNWDKSALMRVDPTPLPALPQDIPVMAVDSFKYLGIQIHLDLSTYIARNLDPIISSLNNILPIWSKLPLTLWGKVNIFKMIYLPRFLYTFHNSPIHIPKSFFKATNQILMHFIWGGKTPRIAWKKLTPPTKEGGLGLPDLHLYYLASQLHYIKWWFDPDPYNPNTNLQAVTVGSMEGLRHLPYRATTDHKNLPAVMATPRTAWNLALKMYPQHSPTLTPNIPLWANSRLPHFYKFPDFLYWPHKQVRRLQDTLDGTTLGTYEFFKEKLAEPTLSQFRYFQFRQVFQAQFGGIDIQTTQTQFETALWSPTLTKPTSTLYKTLLQTTPSPFKTAHRKWVSSVPDLTEEDWEEATDRGYHYLFSVRDKLIQFKWLHQVYLTPIRLRSMGRNPDARCHRCGMEEANFLHMAWSCPQIAKFWSEVMCVLADKLEFPKILTPQICILGILDELITTNYARTRYRTLLYYARKIIAMAWMGPEPPTVQNWITLVNQVLPLIKLTLLARGSKKRGLRKFGAHGGRRA
>L1-9_DR_pol#LINE/L1 3-785 Fragmentlet [Danio rerio]
TPICYNHAFKPSLTDKVFEQWQDKPVFSVTDLYINNIFATFSQLSEKFNLPPSNCFRYLQVRNYVRLNTPDFEVLSLEGELFDLFLNSSNARGLTSLFVNAFKNKANCSSLHLKVALEEDSGISTSETDWDQCLLSVYSCSRHHLIQYKVLHRLHYSKTKLDKFYPSVSPTCDKCKAAEGTLHLFRSCVQIQNFWLEIFQFFAKVYDCVLLPDPMIAIFGWSDFLETLNRNVRLPVQYGMIIAKKVILCFWKKNVRPLFF
>L1-9_Mad_gag#LINE/L1 395-2251  [Malus x domestica]
MEESGQGFYPFHSLIWGLGLYWXFNLGVGVLFLCTTGFDVGLTVRHKCGLCEDGVKVGSNKSQSIECWDGIYGSYEMLVGSVKGAQPLLPPNGRYVQAYAFIAIVIALPLALNEDLRQIQDLRLLPASAHRVFSAHSKYSAASLGLSKVWSLLLMENPGVEELVVHLDRSLDLSTMEIGVKLVGMALTQRPLNRWGIRNILNSAWKDLGEVGIKWVRENLFIISVXDQSMAKKILAQVPWAVMKKNFVVKAWPPDLALEEVDMKTVPFWVQIRGVPLSLVSKENVTRLIRTAGVFLEMEDPAKARGFLRVRVLVNSENPLVLGCWLKREVNRETWVEFRYERLQDFCYRCGRIDHVNTECSYAANMGGAEGYGDWIKAPPVRDFVEPVRPSRLGVGERRTVGMVRGSDRPELRLQRPIHSEAPSRKDTSGVTAGEHGSHARDKKKWRRVQRQACPXSQIQVVVPQLRRQLRWECGGGSFPPVLNQVVFQGGEGGHSVRIRDVSEAYSGTPPDXDLEGFTGTXVCNSRQXSSLLRHEVGGIKRGVEPSSMDLVPSPQKKTRGPNPDADRQVIHDGTMEARDLWDHVEAVSGENESSVLAVCAGNLARGGGGWPSTAARSP
>L1-9_Mad_pol#LINE/L1 2251-6389 via tfasty with OSLINE1_1_pol, 3 frameshifts. [Malus x domestica]
MILVFWNCRGLGSDTAVRALHGLIRNKRPSMIFLSETKMKDHRLDGVRRRMGFQNGFNVSPVGRAGGLSLWWDDSVEVQTLFSSKHIIDVILRKGGDSNWVRITGVYGTPYREDKADFWEWMSSYFTPSDIPWLCAGDFNEFLWDHEKSGGVEVLYNRPRYLETFMQATNLWDLDFNGPAFTWRGMRHGHLVEERIDRALINGLWQDLWPNSLVTHGTVMGSDHCPLIIQSDSESVRGRRAFKFEAFWAKEDECDQVVSSCWNRPDPGEILVRWTKKINDCKSSLIRWSRNKFKKRGQLIQELLHQLQELQRDWRSNIDVIKQKTQLVDELRAQEESYWMQRSRVKWLRDGDANTKFFHNSTLQRRRRNQIIKIKDELGNWVEQPGRVRKLVEDHFMQTFTSGGARNWGSLLDCISPRVTEDMNQALLKPVSEDEIKAAIFKMGGLKAPGPDGFQGIFYQSFWEHVYADVCALVRELMQGSSSPSTLNATHIVLIPKVPHPESVSQFRPISLCNYSYKVLSKVLANRLKVILPMLISPSQNAFVAGRQIQDNIGIAHEMFHFLKGRTAKRKFEMGIKLDMQKAYDRVEWDFLDAVMERMGFSCMWRRLVMGCVSSVNFAVLLNGQPGDKFAPSRGLRQGDPLSPYLFIILGEVLSCMIQAAVDDKRLEGVRIGVSGPIISHLFFADDTLFFLRAEVNYCWNLLSILERYCEASGQKVNLQKSSIYFGANVPKGVAANLGGILGVSVVDNPGTYLGVPAIWGRSKKRGLAYVKGRILGKLQGWKQSALSRAGREVLIKAVVQAIPAYPMSIFKFPAVVCQELDALVARFWWGSHGEDRKIHWVSKEVLGLPKDMGGLGFRNFQEFNDALLAKQCWRLLTEPNSLWARVIKARYFPHCSFWEAKKGARASWAWSSLLSGRELLASGSHWQIMGGEDVRVWVDRWLPSLPSGHPMPLGEVSVTSNLRVSSLIDSSSRQWDFDFLRPFLSMADQRAIQETIIGDSRWKDRLVWAANRNGKYSVKSGYRWLQVRSIDVRDHRLPVVRSISKNLWNCIWKLDVPPKIRHFLWVSLHLGLPTGKALFKRRLSPSPSCPLCRSADETVEHVFLRCPWVAAVWFGGALNYKVDAAGIDSWALWLQAVFSSNWGSSADRKWFQAYVAFTCWFIWKARCDFVFNQVSINPSKVIFSLSTAFGNFLLAVSSVGVARPVSGSREEAAVRWCPPSSPFVKINVDASWSKSSRMGFAGVVARQDGGRFRAAVRSSVLAPSSFVAESFAILRGCELGASLGFSSVIIESDSLQAISCLNGSLENGSWEAFPILARAQRLGSAFQNCRWSWVPRSANMAADVLASAGLTEMCDFVWVDRPPSSLVHVLCNDGLPCPH
>L1-9_XT_gag#LINE/L1 691-1617  [Xenopus tropicalis]
MGKSTHKVKSDAAARLEQYARNSSQEAASSSPHSPNASPPQTTATELAAEGQTIPTPADLMTAILNCQTTLTSMFTSKVEELKVDLSVIKQDMQNIRERTGELEERVGTVEDRTAHLPQDINQIKIQLQAVTDRLDDLENRQRRSNVRILGLPERSEGTQPEIFAEKLLKELLGQEIFSPQYVVERAHRVPMRPLPPGAPPRAFLIKLLNYRDRDTALREARKRGDLQYSGAKISLYPDYSTTVQKKRSSYVGIKRRLRDLGLEYAMLYPAKLKIMEGGKAIFFERPEQALEWLEQRPGNARSPPRAQH
>L1-9_XT_pol#LINE/L1 2411-6175  [Xenopus tropicalis]
MIWYFGYTMSQTGFTVVSWNTRGLNDKVKRSIVLNILRKSGADIIMLQETHLIGQRIRALKRHWVPIMYHAEYSSYSRGVAVLIRRSLGFCLEQLITDPGGRYLLVKGQVEGRPYLFVNVYLPPPADILILHEITQKVAQFGHIPTLWAGDFNMVMDPHTDRLRPHVGDTLALAQWASALSLTDTWRWRNPDARQYSCYTRASAALSRIDLVLVTPDLLQGLTSCKFLPRVCSDHAPLLAAFQWDRDTRSLRWRLSPKWIQHKYIAEKHPPLLAQYWDANEGTTQPNIVWDAGKAYSRGMYISLIKQARQKCEESLMKAQDKLTQAEAAIAEDDTDQNAHRLNECQRDVNLLYTEKYTQTELYRAAHWYDKGDKNSKLLAMLARGETPYWTIRELLLEDGAMTTLRTEMVDRFARYYQTLYDFQPDQTNTGLAALLNTIDIPTLAEPSATELDRDISPEEVTEAINSLPGGKAPGPDGLPSEWYKQHLEFIAPKLCSLYNEVTPNSLLPDSCYEAHITLIPKEGKPPHKCESYRPISLLNCDVKIFAKILALRLRGVIRDLVHPDQTGFMPARATDINIRRLFNNLCVRHQNSGTRVVVALDTEKAFDTVYWPYLWEVLQRFGLGPRFVGWIRALYARPQAKIMVAGMLSTVIYLKRGTRQGCPLSPLLFSLAIEPLAIQIRESKEIVGLQLGDLEEKVSLYADDMLLYLADPKNSLQALIRVLTNFGKHSGLKVNYDKSLVFPIDNLPQSILCTITQLNTVSEFRYLGIQIHKELKRYEQLNISPVLARLREKTLVWQNLPLSVPGKINLLKMVFLPKFLYVFHNAPVVPPKTFFKALDSVIRGFIWSGERPRMSFQTLQAPLTGGGLALPNFEKYFLASQLVYVHWWTVPRLDNRALVLEAAIVGSLEALAKLPYRGISPYYQTTLPINTVVESFQKALKVAQNKQPVWSKWTPIWGNKYLLHFQTVPEIARWAAAGIKTLGDITVGGECKQFNALRAEFQLPTNMLFQYLQLKHAFQSQFPTRPLTITETTLERYLRRPDLAKVLTYMYIVIMQTNTPQHHKVKQQWCENIPDLEEEMWKEALEQVPQITISSRDRYIQIKFLNRVYLTPQRVARIYPGASDLCPKCPNEVGTFYHLFWECPVIKGFWREVLSYAESALALPNILSPSLCLLGILDTLQLRPPAKLCYLQLLYYAKKALLLHWKSTGPPSLNFWKKLINDSLPKQKLVYQARGCPDKFEAIWGTWLLANAPP
>L1-10_DR_gag#LINE/L1 136-981 [Danio rerio]
MPPKTIKLPQHSKPSGQMEEEGKVLASKKLTEPQSEDNAATNDDILRAVQSFRDDCSKQFTDTMEAINGIKTDLLSQAQRIGAAEERISQAEEDVTALQHKVNKLEETTEFLRNKVQDLEDRGRRSNLRLIGLPEKTEGSNMCTFIENFFPTILRDEFGSPPAIERAHRVGQVNPNRPSAPRAIVIKFLNYQDKEKALRAARKMKELRYEGQRISLFQDLSAETRQRQRQFDGVKAQLRGMEIRYGMLYPAHLIVTHVGQRHVFKTVAEAEDFVRSVRTNI
>L1-10_DR_pol#LINE/L1 1588-5370 [Danio rerio]
MINNSEIKIGSWNVRGLNNLVKLKQVLGRLKQMKANIIFLQETHLLKDDVSRVTKRWPGQVFNASFTSRARGVMILIHKSIPFQLKQQYIDPLGRYIILNGTILTSHINLISIYAPNVDDPSFFQNFFFTISAYAGNYVIGGDFNCVLNPINDRSSGVDTHQQSKKTILKYMTDLNLVEIWRYLNPNKKEYSCFSNTYKTFSRIDYFLISNGLVTKVGKSWYDSILLSDHAPVLFTIQFDNLVLPPPRFRFQASWLLDHDFVKFLDNKIDLYFLVNTNQTSASVKWEAFKAYIRGEILSYTRYRSKIYQAQLEDLGKQIKVIERHLFSNFDPSKQKELLVLKAKYNEITSSKISKNLMWLKQSYYDQGEKSGKLLAWRIKKIQTDRAINSIFLENGEKTVDPLEINNIFKLYYENLYKSEIANNLEGQNNFLDKITFPKLSEETRSNLEKNLSIEELSEALQDMCNGKAPGPDGLPMEIYKTFAGKILPHLLEMFNESLGKGILPPSLRSALITLILKPGKPPNEKSSYRPISLMSCDTKILCKALSKRIEKFIPNLIMNDQNGFVLGRQAFHNIRRVLNIVFKKQKAKDHAILSLDAEKAFDRIEWRYLFEVLERFGLGDGYIRWIKLLYNDPQAEIITNNQISKPFNLSRGTRQGCPLSPLLLLFAIEPLAMAIRSSPEIKGIIIGEREHRLSLFADDIVVFLSSLELSIQALNALLKVFGEFSGYKVNNNKSALLLLNKDEQRNYTNNRQFFNSQEELTYLGIKIVTNIKEIISINYDPLLKKVMDSLERWNAMPISMIGRINIIKMSILPKFLYLFQSIPLPLPATFFVTLKKMFTRFIWNNKRPRLRLSLLYLPYERGGLKLPNIKLYYWAAQLCSAMYYFIETDPPAWIDIEKNEITTPLQMYLYSSPVKVLKKYTNNPFLRNSICVWYEAHDFLGETIKLSSLSPIWGNAMFVPGRNDGGFKNWMYKGAKQVKDLYKDGTMMSFQQLMKEYDIPQKHFFKYLQIRSFIHSEIKTYVEPSLSTIEEHTVKHLRDKGNLSFFYNTLLEGSKESSMSYLTAWRNDLQEDISKDEWMDSCLFAQTYSVNTRCRLLQYKWLMRTYITPVKLHKFNPNIPDSCLKCKQDIGTLYHCMWECTEIQTFWKSILVMIGKLTEENVPCDPKLCLFHIYPVNFVVSASKRKLIDFSLLQAKRAIALKWKEMQGPSSILWIKEMTNNLAMEKLTYAVKGKLKDFYNIWTPFLCYCNQEDLTGMDD
>L1-10_Mad_pol#LINE/L1 1223-5388 via tfasty with L1-5_Mad_pol, 17 frameshifts and 5 stopcodons. [Malus x domestica]
MKTLCWNCQGIGGSLTVDALVEQVRLHNPEVVILLETKNKSDRYKYLLKLLRMDFMQPVEPKGIGGGLCVFWKDEVDISSIVWSSFYIELGVGGDPIHSDWRMLAVYASTDDKRRRGQWGELSKRISSSQGKCIVIGDFNDIVDDEEKEGGNYRSMASTRDFRDFLAENELLDLGFEGYPFTWRNKRDDGLIQQRLDRGVATSGWMDLFPNAKIKHVVLEGSDHSMLILSSDGIHSERAARFIYDSRWGKNPECRDIITDAWRESVEGSLAFKVSEKLKGTRHRLGVWKKTTKPNSKRRIEELREEIRKGYCGCDVRQEYIRGKEKELAVAIKEEESYWKVKSRNTWLREGDKNSKFFHAQTVQRRRSNRMQGLEDNTGVWQKDPVRMQDIAVSYFTALFQSGGSRQGGEVAACVGAKVDARENEELIRPFSAEEIREAVFQIPATKSPGPDGFTAGFFQDHWEVVGGDIIRMVQAFHHSGRLLQKINHTHIVLIPKVKAPRRMTELRPISLCNVVYKIIAKVLTRRLKKVMDRVISFNQSAFVAGRQIHDNILVVHEILHSLKQGVEGEDGRMAIKLDMAKAYDRVEWGFLIEVMSNLGFHPKFCAWIRECISTVSYSVMVNGVPSGYFRPERGLRQGDPLSPFLFLLCAEALSAYIRKHEMEGLISGVRVAPGATPITHLFFADDSVVFCKADETEAGNVIKILEDYGKVSGQIINLEKSSIFFGKGCSKKNKKRIVSRMNIQARDGFGKYLGIQADFGHSKKAVFESVRRGIESRIDGGEQFLSPAGKEILIKSVAMAMPNHAMACFKLPVTTCKEMERVIAQFWWRGQSKTRGCHWVAWDKLTESKKVGGLGFRDLIGFNLAMLAKISWRVLDKPESMLGMVLRDKYFPNSSFLEASKQNKSSWGWKGILLGRQVLNRGLRWRVGNGESIRVADPWIPKPHSFKPVLGMGLLIKGVxVDDGGxAGVELEEVATVVAPEDLELIRTIPISRRGCEDKRIWHYTKNGVYSVRSGYHVAMEMMKNGSLGGKGGDASSSGSLGGVWKRIWSLAVPNKLRFFIWKCCRKALAVRHNLERGGFGGExVxAVWSGDETEAHLFFGCEFSRVFWFGTSLQINMAAMGVKDFLEGWQRVVERMEKEEDADLIMQQVVFGFWRIWKCRNEAVFKGIRILPHVAVELWQRQVEEFREAMMVRxWREGSNGGVGGQGGGRPGEGSGGRGSMEETCVWRLKLNCDAAWRKDTKVGGVGWVLRDFAGIPKLAGGVGGERFAAAIMAEAEAVRQGLEMVVGSEVMEAGTRLVVESDSKGLIQMLNKEVTADVTLEIYLQDIWRMASLFQLVRFCFTPRQCNRAAHSVAAYVVKHGGRFGWDELGPEFLFNILAEDANVTVRI
>L1-10_XT_gag#LINE/L1 205-1110  [Xenopus tropicalis]
MGGSKTQKTKSDTASKLEQFARHPPQNGADPKRAHAEPSTSPSPPPPQPEAATQLLLDAITDCRTSLSTKLEEVKTDLSLLRADLQNMRERVKETENRISTLEETCNPLPSALTRMDTKLKSCMDKLDDYENRQRRNNVRLVGLPERTEGADPVAFAEGWLKNSFPSAPLSQFYAVERAHRVPGRSPPPGGPPRPFLIRLLNFRDRDAILQAVRQSPDIMVDGKKVSVFPDFSAELQRQRGTFTAVKRRLREANLKYGMLYPAKLRVQAGDRTLFFQTPQEASDWLDTRGPQSPRASPNRQN
>L1-10_XT_pol#LINE/L1 1863-5594  [Xenopus tropicalis]
MKGSLKLLSWNIRGLNSKFKRALMFDYVKKYVPDLLLLQETHLVGQRLMALKRPWVAHAYHATFSSHARGVSVLIRKGIPMEILDLITDHYGRFILISCVLFNQPLTLASVYIPPPFNQDLLDNMMSKLMTFPPAPMLLMGDYNAILDPALDKLTPGPQPTPKFPIWAQAMNLTDLWRWKYPDQKVYSCFSATYNTLSRIDIAFASSDLLPRVTSVEYLPRAISDHSPIMVQLNLLQDPTKSLWRLSPLWLTHENVKEANDSALKEFWELNPGTAPTDIVWEAGKATLRGALTSAITGVRKKAKEELEERQNKLMEAEKQFITHTGPDTLRTFRAAQTALEETRIKLTQKKLLYATQRTFDQGEKNGKILAYLSKAQAPSNTITKITSMNGDIVTEAAHITNIFAQYYQQLYTTKANYTPLQLSNYLDTIPIPRLSPLLRAQLNSPITLEEVQEAITSLQPNKTPGPDGFPADWYKASTELISPWLHKTLLDATEKNKLPRSFNTALIVVIPKEGKDPLECGSYRPISLLNVDAKIFAKILSNRLKLVIEELIEPDQTGFMPNRSTNINIRRLFTNIHANHTNKGSRVIVSLDAAKAFDSVEWPYLLKLLERFGLGAQFIKWVGMLYEAPTARVNVNRHLSPEFSLSRGTRQGCPLSPLLFALAIEPLAILIRHSPAITGLKLGAVEERISLYADDVLLYLDSPGASLQTVLRIVKHFGYFSGLRINWDKSSVFPIDPNMDPNMFPPTPLQWVDTFKYLGIQIRKELSDFIPNNLDPILKAMKEKLLVWANLPLSIWGRINLLKMIFLPKFLYIFHNSPISIPPKFFTSLDKTQTAFLWANKPPRFSRAKLRAPITEGGLGLPHWQFYFLAAQVYYVQWWFSPDLTNPNVPLQATLASSMESLKYIPFRKLSDIQTNHPVIVTPYKAWQKILKLYKLKPPILSPGLPLWGNSYLPNFQQIAPYRVWPHWGIRTLGDVTNAGALLPRNQIKHTDTGELLPWFSYLQLQQAFRHQFQRTIVPFVLTKLETTLRNPSSKKLITTLYSLLLSTLQSPFLTAQKAWRQDIPELDNEDWEEATDRAYDYLISTRDRLIQFKIIHKLHLTPLRLYRMGIRDSSQCPKCGAPEANYFHLMWSCPQIHHFWNQVLDHIQNTTSLPKILNPKVCLLGIVDDIIPKSASRILYRTLLFYARKTILFQWMAHSPPTIASWLNLLKALLPLIQLTYIARGCPQKYDKVWGTWVEAME
>L1-11_DR_gag#LINE/L1 6-1046 fragment [Danio rerio]
PSNARFCETWCLTQNGGVRLLDKQTKNFGVISIFLLTFHHRISLIKNWTISLHLDYFLFSFFFHPGSTGRLHRRTLQHTLLQYEHARSHRKGNLTPISKRPRSNSPLTMNSTPSSPSCCTEVSDILRSIENKLSGLDTRIALIEVIHKEFQELRHSLEFSQEQIDTLTKENNFLKDSVHALSTQLTSVVKENKSMKENILDLQTRSMRDNLVFTGIPDQTPDDPEKLIKDFMTKQLKLPAETVQTITFHRVHRIRSQQNSNRPRPIIAKFEHYKHKELVQKQGRQLKGTTYGLNEQYPKDILDRRKQLFPIRKQKINEGKRAIITVDKLFIDGQLFRDKDITPWLF
>L1-11_DR_pol#LINE/L1 1362-5096 [Danio rerio]
MSXIXFLSWNVRGLGSQAKRIKVFNHLSKLQADICLLQETHLSEXDQNKIKSSQYHSYSAHYNTKQRGVCILINKKISFVHNTTITDPEGRFVIINITINNXSLTIGNLYGPNTDDPSFFQXFFSXISNLSNCPXIIAGDFNTVLDPTTDRXNNIXXKXIWKSTDXIKQFMSDMGLGDSWRLQHPDIKAFSFYSPVHHSYSRIDFFLTSNSILSNISESKIHPIIISDHAPVTLKLNITTRHKPISRWRFNTSLLQDQDFXSYFKREWACFLEINDSPETSPSLLWETGKAVLRGKIISYSVYKKKKEKEHQAELEQKIKDLEDININNPTEETQDLLRKYKSQLNKLINTHTQFLIHRLRQEHFHHSNKSGKYLANQIKHNKEKTTISVIKDSAGKPTNSPEEINQIFQKFYSNLYSPEKNPSQDEIHSFLSNINLPQLNEQQINXLESPLSQQEISNALKLMPNNKSPGPDGFPAEFYKHFWSILSPLFIRLINESKQNSKLPDTMNTATIALLLKPNKDPTLPSSYRPISLINVDTKIIAKALSHRIEKIMPSIIHPDQTGFIKGRQSSNNTRRLINLIHHSSINKNKSIIVTLDAEKAFDKVNWKFLFSTLERFGFGESFINWIKILYTSPSATVITNGLTSRSFTLHRGTRQGCPLSPSLFTIFIEPLAAAIRQNXYIKGIQTLNIHHKISLYADDILLYLQNPQTSLQETIKLIDTFSNISEYSINWNKSAILPLNSTSVDVTSQTSQIPLCTNYITYLGINVSARLSELFALNYTPLLKKIDDDLQRWMNLPLSIMGRISVTKMSILPKINYLFSMIPTQPTHTWFKSLDSIITQFYWKNKTPRIKLTTLQKPKTQGGLEAPHFYNYFLANQLQNIHKWIKPNSSEYTWQDIEQSICKDINISELPFHSQSIKRHHCFKMPTIEATLTAWWKFHQVTNSPLTPSKYTPIWNNLDFLANKKPLNFRTWAAKGITQLQHIFINNNLAPFPHIAQTYSIGSNCFLEYLQIKSSIKSKLPNQSINLDLPPQISEFINISPSKKLLSQIYKMISKSDNALVLPTTKWQTDLSINPNAAFWTQICKNTFSMTKNANLQLIQYKVLHRSHLTGQKLFKMGFTSEICSHCTQNTPDTYLHALWHCTSIKSFWXKVTDSLSNLMGCHIPLCPSLCILGDISTININNTNGQFLLVALTIAKKTILMNWKSRNTIHISYWKNLLTEYISIEDPLCLKPFPNNTFIST
>L1-11_Mad_gag#LINE/L1 2-1657  [Malus x domestica]
MAEQVEPGGQAKGKSSRMDGESVSSPIEFGANGVDSSRSGKRSRGIDGPNLDAERDMAALHLEPNVSFKDKLMKSSRRLVSVAVSDFDFDPDLVDGDVSFSREVKGPIVTFSEKAVTKFGKDWHDALVIKLLGRSHTYNFLLNRLRQKWQLKGGMQLIDIDHDFYIVKFDLEEDKEFVLTGGPWIIAGQYLTIQKWRPGFVPATEVXTRMAVWVRIXGVPIEYFNVWAMRKIGSVLGKLLKIDVNTNSQYRGKFARICVEIDVTKPLEAFIQINDRWYNLEYEGMPEICFGCGRYGHKRESCXWSVDPMAEKVDGGENESNXMNMDEPIVKXAQSSDDVSAIHGXWMQVKPRGRPRKINNGQRGVDXXFNGQGSRFSALNGEDKSLNEGNVGSGTDGEKGEGSIERKIWGVRKKKEASDRDALADISNCGGKPSTHNLGQLRQPLVRRSSSSSISNVEDQPFKFNVNAFKTDMYYGSNMSKGTYIFGHQPSNASGSDVELAACDLDPGEEMMNTDHAIPGSIIQRSRSTEDXCSAKSXEXCASHVEXTLMGC
>L1-11_Mad_pol#LINE/L1 1548-5797 via tfasty with ATLINE1_2_pol, 1 frameshift. [Malus x domestica]
MLFQVQLFNDLVQPRIXVQLSLXRXVPPMWRXPLWVARLYALVLSXSSIFMMNIVVWNSRGAGCTKFKDNVAELINIHQMEILVICEPRISGQKAISVVKSLGFPCFEIVDAVGFSGGLWMLWKDSRLKVEVIGTTDQAISVVVGGVGQNHWIFTAVYASPCVTKRERLWDYLDFVADCHQLPWLIAGDFNDMLCVEDKLGGAPLCSDSKGFKSWVDRNYMIDLGFIGPKFTWTNKKVLERIDRGICNMSWRSLFPEAYVHHLPRTKSDHCPIKICLNSHKSFSPKHRPFRFEAMWLRHENFKEFVDGYWSNGGGSVVDKTCALVEPLKKWNIQVFGHLKQRKRKLLARIDGIQKALCRGPNKFLSKLEDELISEYNEVLNEEAIFWHQKSRLRWLQEGDRNTKFFHLTTIVRRRRNRIEGLINNQGAWISESSDLKKLAVEYFQTIFSHGQKSKQMESLPNLFPDIHDADREALTKDIDMVEVKESLFNIGGLKALGIDGFPACFYQSQWNICANDIFEMVWNAFHSRRLPARLNSTLITLVPKIDNPQKMLNFRPISLCCTLYKVISKIIVARIRPLLPHLISPNQASFVPGRQISDNVLIAQEILHKFRMSKGQKGFLAWKIDLSKAYDRLNWKFIEYVLNEVGLPSNLVQLMMECVSTVRYQICFNGELTDGFTPQNGIRQGDPLSPYLFVLCIEKLSHLISATVNKGRWKPVKASQSGPGVSHLFFADDLILFSEATPKQARLMKRCLEKFCKASGQAVNFEKYVLYCSPNTSRAVVNSISAICGSPVSESLGNYLGMPLIQTRVSKATYSGVIDKVQKRLATWKSKVLSMAGRITLIQAVTSSIPVYAMQTTKLPASVCEELDKLNRDFLWGDTDQKKKVHLCQWSMVCRPKSKGGLGIKRACVMNQALLAKLGWRIHAKDSGLWSQIYQAKYLKGYSILDPKIHERTECSYSWKGILYGANLLKKGMTWRIGNGESVKFWKDSWVLNVPLMETIDVANISNIDCVVSEFLRNGWWDIDKLRDVLPEDMVQKVICRPAGTTGAGMDKIIWRCASNGVFTVKLAYNLFFDGEDLPDSCWDFIWRVNVPPKLKVFLWLMSKGRLLSNEQRVRRQITSDSSCMTCCGPIESIAHIFKDCSRAMCIWKSMGVPWQLRNAQNLEFKAWLLANLKVSSKGTNEGAWCTLFLFICWHIWKWRNKQIFDVNFVMPMYPKAIIERDVDEWLKACVKYSVKLVKRQISLSWDHPDVGWCKLNVDGSRRTNSGRIGAGGVLRDHNGNWLGGFAVNLGQGQVCDAELWSLYFGLQLAIDKGATELHIEMDSKAVIMLLKQSQVDNFHPLETIMHSCRLMMRQLRRCELNHVYREKNIVADQLANWSYNMDIGVLVFDEPPVWIRSALIDDAAGVPRTRFAVGL
>L1-11_XT_gag#LINE/L1 161-1201  [Xenopus tropicalis]
MGRNKTAAKKTRTRSAADTMSQDGADPNETRNATSPGTHKGETVARRLEQYARAPLPQRSPNGRTHTSPAPATNAGTTEAPSVTXGPTAPTQNAHSSEPTLTEVLNTITGNHTVLITRIDELKTEFTILKHDVQKIRERTGEAERRIGELEDNMNPLPGRITNTEKQIQALEAKADDLENRLRRNNIRILGIPERAEGTTPEKFVEQWLTNTFGQTAFSAAFTVERAHRIPGRPPPPGAPARPLIARLLNYRDRDAALAEARKAGDITFENQKVSIYPDFSAEVRKTRAKFTEVKQQLRQRRIPYAMIFPARLRITDNGKTHFFNTPEETTAWLETRPRNSPNRDLQ
>L1-11_XT_pol#LINE/L1 1697-5425  [Xenopus tropicalis]
MAIAKIISWNVRGMGNAIKRRLVFDFLKKVKPQIIMLQETHLTGNKTLALKKAWIGPTYHSIXSNYSRGVSILISKSCPFTTKKVILDGEGKFVILHGAINGKTITIANIYIPPPFQDETLYAIMGKIMSLPPAPILLMGDFNAITDANLDKLSAPKSTNQAFVRWVSTYGLIDLWRSRNPGEKQFTCYSAGYNSLSRIDLALGCTEINKQVQKVEILTRGISDHSPVLLTLTTSPKPADRIWRLSPYWANHEAMAENIQNCIDTYLATNLQDTPPDTTWDALKAYIRGEFISNIKAHNLNIEAEISHKSQIVKETEAKYVSDPTDNNKREWQQCQEALNIAQLELTKKHILFQKANIFEHGDKTGKLLAIISRDDTISTSISAIKLPNGQITSSPEEINQAFKNFYSELYTTKLQATPENLHLYLDSLQLPTIPPIATQQIAQDITPSEIELAIAALPSGKTPGLDGMPGEWYKRHAKKLAPTLAQLYNGIQNGNALPQSMRETLIVLILKPGKDPLLCSSYRPISLINVDAKILAKVLANRLTKYITGLISPDQTGFMPGRSTDTNIRRLFTNLSIKHDNGGERIVVSLDNEKAFDSVEWEYLWATLKTMGIPPTFIAWIQALYTSPIAKVRTNATLSNFFPVSRGTRQGCPLSPLLFALAMEPLASRLKLTQEVEGLKLGNLTELVSMYADDTLLYLANPHQALSSALDIINNHTSFSGLKINWTKSVILPIDTLPNPPNQTNQLKWVNSFKYLGVWIHGDLTKYTELNINPIMRYLENKTETWRRLPLTLTGRINLFKMIVIPKLTYIYRQSPITIPQTTFRKLKSLMVSLFWNGEQPRISLQTLQLPTTGGGLAAPNPYMYYLASQLVTAWRWTSPSLTNAATLLEIQIMGSQEELQNLLYRGTKSTKKATQPMRATVSAWKKASQTFPKAQPHCSQYTPLWHNPNLEQFQTIPDPKIWTRHNIKYISDIMPQGTLLXFQELKQTFSLPNTMLFRYLQLRHATGTQFGGQAVDTTPRNIETLTHIEDLKKPLSVFYAQLMRASSTNLTKLXEKWQRDIPQLTPDQWEDILESTFEGIISSRDRLTQLKYLHRTYMTPQRLHKMHPDLGQECPRCGHSPADFLHMVWSCPRSQRFWGKVANTIRDRTNLVLQLDPTVTLLNQVEDLSPKRAERTLLLILCMYAKKTIALYWKSPEGPRVAAWESMINKAIPLYKLTYIRRGCPQKFDKIWSSWIDTEPS
>L1-12A_XT_gag#LINE/L1 14-1042  [Xenopus tropicalis]
MVKKSQRRHGKGESTRLRNMHFQDGAAVNTERAVSPDTAVTRGTAAKRLAQYAREPLPQRSSRGMSPTSHLPTRQAEIEGNGDTPPTQISAPFIKEPTLTEVLNAITTNHTTIVGKIDELKTDFAILKHDVQKLRERTGEAERRISDLEDTTGPLTGKLTTTEKQIAMLETKADDLENRLRRNNIRILGLPERIEGNATEKFIEQWLIRMFGQAAFSPTFIVERAHRVPGRPPPPGAPPRPLIARLLNYRDRDTALAEARKAGDLMYENQRISIYPDFSSEIRKQRAKYTEAKKQLRLKQIPYAMLFPARLRVTDKGKTHFFTSPEDTIRWLEERPHDSPRRE
>L1-12_DR_gag#LINE/L1 113-1171 [Danio rerio]
MMEGEKIKKGKGKQLGKADKGSNLEDTAVAEEQGERNGGQEENLKLATVDDSVAAIRADIKMMALEMKSELNNFRDDLKRELVDFRKEIYQTLNEXTTDLKTTTDRVSEAEARIAEAEEWSTDFREALSQSLQAQEKMQMKLTDLEARSRRNNVRIFGISEGAENNNIYQFIDNLIKKELDLVDIELRIQRCHRALGPRPPNEAQPRSVIVYFQEFKVKEMVLHTAWKKKEIFHNNSRIYFDHDYPAETLTKRKAYSQIRRILKEKGIRFQTPPPAKLRVFFDGGPITYGSADEATEDMKKRGFQFGRETSSEVEVLSKARTTGWQRSTNTTNRQTRQDWIKERLRNFRRPR
>L1-12_DR_pol#LINE/L1 1772-5557 [Danio rerio]
MQFQEYRVITLNVNGLYNPIKRSKVIAKMKKEKLHVIFMQETHLNNLEHEKLKQKGFKNVFYSSYRRGKRRGVAILISNCVNFRLLAEFTDKEGRYVLVKGLLDKKEVTLINVYIPPEQDNSCIREVFQLIASEASGVLICGGDWNAQMQPKLDSTNALKRLTPRARVTKKLLMELGLIDVWRELHPLDKQFTFYSASQISYSRIDYFFVFNSDRHRLIDCKIGTRDISDHSPVYLTIHLDNKKNNSLWRLNTSILNDSTYKEFIQKEIKDYIDNNNNGEVSPSVLWDASKSVIRGKLIALTSHKKKEKCKKMFDLQENLKTLEREHIMEKKPHILNQIKNIKKQINTLYEEEIEKKAKFTKQRFYENGPKALKLLAWRLRKQQAERTISEIRDPITNRIKHNQDDIHNIFETYYRNLYSEISTTNPTEINIFLESLDLPSIGTTQNKSLMAEITKEEIGKAISRLKVNKTPGSDGFPVEWYKVFKDQLIPMLHECFNYMLKGGEPPRTWSEAIISIIPKEGKDKKECSSFRPISVLNTDYKLYASILAKRLEDIIPELVDLDQTGFIRDRQTQDNIRRVLHVIDHVNKKKTRAVVISLDAEKAFDSVRWEYLYLALTRFGFNEDFIRCIKNLYSSPNAKIRINGHLTKSFVLERGCRQGCPLSPTLFALFIEPLAQLIRDEPGIKGITVRGSEQKICLYADDVLLFVGTPELSIPNLMSVLNKFGTYSGYKLNIQKTQILSFNYFPQKDMQNKFNFKWNSTSFKYLGIKITKDSTQLFDSNFGPINKSIKSDIDRWSQLPLEMHNRIETIKINIVPRLLYLFQSLPIEISSKQFREWDKWISRFLWRGRRPRVKYKTLQLSKEKGGRSLPCLSDYYKAAQLRPLVICCNPEYTAKWKDLETSQIDIPLQSLLGSKILHKHYLNSLNQWSKVPLRIWFKECNSPLLEKQSRLIKWVAFDPDFKPXKIDGRFQAWYRLGITTFSLISSNGELDSFQKISDXYGLDKCDFFRYLQTRTYFNSEIRCSENHPPNLIDLVIDIYKNKDNRRLVSKLYSAIRSTKEESTNYIRLKWERESNLVISEEDWLNICSVQATSSNSGMWRDFCWKNLTRYFITPKLTYMQTQDKDRGQCWRKCGEDLANHFHIFWSCPAIQPYWKDVKQIIRNIFGDDVDLSFTTIYLGNIAANLTVKDKYLLKILLATSKKTVTRKWLQLEPPTKSEWLDIISNVQNMERMTFSLKLQMDKYLQYWEKWIVLMPLHSVI
>L1-12_Mad_gag#LINE/L1 153-1599 via tfasty with L1-3_Mad_gag, 2 frameshifts. [Malus x domestica]
MVSDSAPLPRNSKPPSMKARTFASIVSDSTERVSLSQLPIPVIRGDQIFVKISEDLYQQQLQSFRTNLIGRLLLRKGTAPLKTAELKSSLEALWRPVAPWLLVPLGKGYIDIHFNTEDDKRRIWGGGTCTLPNGIFRLSEWQPRFNPNDIAPPTHAQVWIRIYGLSQDYWHPRHLLEIARGVGTPLQLDKATKERQFGYYARALVDVDLAVDLPSSIMVEHEGHSFPIDIVYEKLPDKCNHCGILGHTVDRCRHLKKKNVAMDSQPSLAAGRKVNNRTEYRVIQDPKRNECVDLIVVDKMQPIEEVVHSSSPMELNSPLVQQHGQSTRRLANEIIESAANEIINLVADLVVNEPMEVTKPTVGALISKPTGKALQNEQGKNVIGDDSESDEAITPHSQRFEVNYGDLGTNVGQLVCQHSSPNSSDLQEGAKICDIVNEDGMTLVLSKSQKAKMRKKIRDGNISKEVREPYPTRSRVPTERLDL
>L1-12_Mad_pol#LINE/L1 1599-5737 via tfasty with L1-3_Mad_pol, 2 frameshifts. [Malus x domestica]
MKILFWNARGMGNAPTKRVLRRMVQRHRPYLIGISEPFIQLNSIKLSFWRSLRLFPVAVNDRGDLQPNIWLLCDQAIQPSILLATAQQITISCTLDSVSCVITWVYAKTTIIERRQLWQDLRSIKSSFVNGPWLVLGDFNCVLGAHEKKGGLLPKTTSCSDFQEMSSACDLLHLPTKGLPYTWTNRRGIKNQVEMRLDRCLGNFQWIDAWSLLECSTLPRISSDHCPLLVSFSKLTITPKAPFRFHSMWLDHQDFFSLVEDVWKSSNFYGCPMYVLGAKLRVLKSRIKVWNKLVFGDVNMNVDRAFDALDEIQKEISSLGPSEERFTKEDNASLCVQKALIAQEKFYRDKSHIKWLSEGDNNTSFFHSMVKIRKLHQSLAVMRDGNRVLDNQMDISQHVVTYFQDLFSADSSVTDTGLVARIIPKVVTATENESLLAIPTPDEIFETLKSMDHSSSPGPDGFGGSFYFRCWPIVGNDVVQAVQSFFSQGNILPHFNSNLMILIPKVDGANSVNHLRPIALANFSFKIITKILADRLSPIAARIVSPQQNAFTKGRSIVDPIILTSECMNLLDRRCRGGNIAIKFDIRKAFDTLDWGFLLRVLDAFGFSAGFVDWIRSILTSAHLSVLINGSVEGFFPCSHGVRQGDPLSPILFCLAEEVFSRGLTKMVEDDLIDTFSVPMGIAPPSHVLFADDIMVFMRGTKRSMRNLMRFVEEYSLNSGQCINKLKSLVFLGKYASSRHAIIQKVLGVSQGNLPFTYLGVPIFQGRPKMIYFQAIADKIRCKLTAWKGSLLSQAGRLQLINSVIQGILVYSFQIYAWPTNLLREVQGWIRNFFWSGDPLKRGMPLIAWSSCCKLKEEGGLGIRDLFESNRSLLLKRCWDVISSSSPASDWLRNRFLKDNFHLLKSYKKSSVWLGLKQLWPSFYSSLQWSVGDGRKISFLYDNWLGTTLLSNIGEVDIIPLNSKVKDFIQDAKWSLPIVFTSSFPHLSEKIMKTPLPIAHMDDALFWTGSSSGTVSAKEAFFFLSSHAPHKKWAKMVWHQSIQPRKSLVVWKACHGILLTDDLLQLRGVALASYCAFYHNVRESCDHFLLHCPQTVALWKWIFILFGKPYDPWQCIEDIFYGSLVLSFPTSVWKLWLLVICSFFWWLWHERNKIRFENKSFSIVKSQHCLLRHWRESASTCFSSFTGCVSIPIFSMLRISSLSLDALSIVPMFWRPPPVGWIKINTDGPCKGNGQVGSGGVFRDSSGLFLGAFASSSSYPSAVVAEIVAVIEAIQIAWDKKWHNIWLETDSMHVISLLSAHSMDVPWFLKVSWANCLWHIARLHLRFSHIFREGNCLADAFANFGAMNSSFTWWDLVPDFADASYRRDCVGLPFFRSSS
>L1-12_XT_gag#LINE/L1 149-1180  [Xenopus tropicalis]
MVRKSRRGHATRQTPRRRDMQSQNGAESSAERADSPDPAVTRETAAKKLAQYVRDPLPQRSTRGMSPTPHMPTNKRQETASCSPSTSAQTSTAPPTEPTLTEVLSAITTNHTALVGKIDELKTDFAILKHDVQNLRERTGETERRVSDLEDFTAPLPGRLTTTEKQIAILEAKADDLENRLRRNNIRILGLPERAEGNTAEKFIEQWLTTSFGQAAFSPAFTVERAHRVPGRPPPPGAPPRPLIARLLNYRDRDTALAEARKAGELIYENQRISIYPDFSSEVRKQRAKYTEAKKQLKLKQIPYAMLFPARLRITDNGRAHFFTSPEEVIRWLEERPLNSPRRE
>L1-12_XT_pol#LINE/L1 1676-5413  [Xenopus tropicalis]
MATLKVLSWNVRGLGNAIKRRLVLDFIRRNKPQIIMLQETHLVGSKILALKRPWIGSTYHSLYSSYSRGVSILICKTCPFVTETIISDRNGKYIILHGTIQGKKLTIVNVYIPPPFAEEPLREVMNKILTLPMAPILLMGDFNAVIDAKIDKLNPPRVNTPAFNRWISGFQLTDLWRVRNPGVKQYTCYSPGSNNMSRIDLALGCEEMNKKVQKVEILPRGISDHSPIVTTILISPTPADRIWRLSPYWASHTQLNETIHNSIETFLETNKDEVPPDVTWDAFKAYIRGVFISNIKALETNLRAEIIMKSQKVHETEAAYIAHPDTQTQQAWTESQRDLNLAQIELTKKHMLYQKAGVFEHGDKNGKLLALLSKDNSTTMLIPAIKLANGEITSSPEEINKRFTEFYSDLYTSKLQVSPTEIQDFLRDIDIPKLDIQTSQYLATEITIAEVEAAIGASPSGKTPGTDGIPMEWYKQHTKLLAPLLVKLYNGVKEGKPLPNSMKETLIVLILKPGKDPLDCSSYRPISLINADAKILAKILATRIAQNLSKVISPDQTGFMPGRTTDINIRRLFTNISIKHDNPGSRLVASLDNMKAFDSVEWEYLWATMKRVRIHPTYINWVKALYHLPVAKVRTNTKLSTPLTISRGTRQGCPLSPLLFALAMEPMACRIKAQNGIEGLKLGPNKEIISMYADDTLIYLPNSEQALEMVLQVINSHTNYSGLKINWEKSVLFPIDPRPPDAPTQTKGLQWVESFKYLGIWIHANLNKFEELNIHPILKLIEKKTELWANLPLSLIGRINLFKMVILPKLTYIFRQAPTVLHKSIFAKLKSLMTTLYWNHSPPRIALTTLQLPTNQGGLAAPNLFLYYLAAQLTVARNWTVPTLTNAATILEAQVIGSLEELKNLLYRGTKYTKKASPLMKATVRAWQTANSFYPKPQQYYSEYTPLWHNPHLKHFRSIPDPQLWAQYNIKYLADIMENGTILTYQELKQKYLLPNRMLFRYLQLRHAAEAQFGXMPIDTTPRQTEIRTHRETLKKPLSSFYAQLIQVGSTSLNRLYTKWQNDIPQITTEQWEDILDSAFEGVISSKDKMTQLNYLHRTYLTPQRLHNMNPNISQNCPRCQHAPANFIHMTWECPKIKPFWGKVIQLIKEKTDITLPMDPKITLLNQVEEISPRRAQRTLLSILCMYAKKSIAIHWKSSGAPSIHSWEQLIEKAIPLYKLTYMRRGCPDKFYKVWEPWLDLDPTVD
>L1-13_DR_gag#LINE/L1 163-1050 [Danio rerio]
MMSKNKSAANAPPTTRTSVASKLATMATAAKSEETQEDDNGVTMSQLVAELTKQRTSIKEDISALIQESIVSLQTSVNALTETMASFQSRLCATETLASENFSALAAAEKTIKALKEQNTTLLDRVDDLENRSRRANLRILNIPENSEKGQPTVKFVSEMLMEIMGEEVFEKPPELERAHRSLGPKPQDGRPPRPLVVCFHRFQEKEKALRWARQNEVKYKGSTLRIYPDISADLARKRAMFKDVKQLLYQKKVRFQLLHPARLRVHYEEQTFLFDTPEKAQQFFDQRIATHDNS
>L1-13_DR_pol#LINE/L1 1617-5429 [Danio rerio]
MANTGDKENTKSSAVRFVSWNVRGLNGPVKRTRIFTHIKKLKTEIAFLQETHLRIEDHNRLRKNWVGQIYHSSFNHRTRGAAIIIHKKIQFIASETISDPQGRYIIVSGHLFEVPVVLVSVYAPNWDDVNFVKKLFSLLPDLNSFHLILGGDLNCVMDTTMDRSNPKIVPLLKMSQVFAGYMNQIGCIDPWRFLFPDKKVFSCFSHVHQTYSRIDYFFADKRLIPAIKNIEYSTIIESDHAPVIFDICFSYNYTTRPVWKLNTTLLSDSNFCKFISRAIDNFLINNKSDSISPSLLWETFKAVIRGEIISYSTSRNKERKQTEEKLIESIQKIDRQYADTPTPELYREKLSLKTKYELLSTEKTERNLFFARARFYEHGDKAGRLLAQQLKSKSASRLIPKIKNTKQDITVDPQEINNIFYKYYSDLYTSEFPQEDSPMSTFLSNINLPTVKMDQRKNMDEPLQLQEVENSIKAMQSSKTPGPDGFPIEFYKKFSSQICPLLLNMFNHSFEQTKLPPTLTQAHITVLLKPDKDALYCSSYRPISLLNVDVKILSKLLASRIENIIPEIISQNQTGFIKGRHSFINIRNLLNVVHSPASEDSPEVIISLDAEKAFDRVEWKYLFAVMHKFEFGSKFISWMRLLYHQPKAAVLTNKIVSQYFSLSRGTRQGCPLSPLLFILAIEPLSTILKSSQSIRGIKRMGVEYKVSLYADDLLLYITDPLSCISEIDKILKEFGNFSGYKLNFSKSICFPINNMAXXIADTDLPFCFSKSGFKYLGINITRSYTDLFKANYSPILKKLELDFQRWNVIYLSLAGKVNCVKMNVLPRLLYLFQSLPIFLPKSFFQSTNRLLSSFIWGGKKPRIRRDFLERPKGDGGLALPNLLNYYWAANLQKIIYWLKFPHTEWCEAEAKSCKSTSLPALITMKTPFSPSQYSSSPVVISTLKIYNQFRQALQFQDFSLETPICNNHLFPAANLDATFKKWQDLGILTCRDFFIDNIFANFNDMSKKFNLQKSDFFRYLQVRHFVQTQCSVFPQMPAESGLDLILKTPVHPKGLISKMYNLIMTFXNTTLEKIKMEWIEELGINISEETWDKAVKIINKTSSCARLNLIQMKILYRIHYSKTKLAKIYPNIDETCDRCNSCKADLTHMFWSCDKLRRFWSSIFEILNSAFNLRIQPNPEMAIFGVTNEDIHLAKEIENAFAFVTLIARRRILMEWKSPMPPKLSLWLSDVMLFLKTEKIKYFLRGSTKKFFKTWDPLIIHIETNVLLQP
>L1-13_Mad_gag#LINE/L1 540-1292  [Malus x domestica]
MGFVAYLMFNKFGEHEIEAYVRVHVLCGLSGEQVKMQGAEVVKIFGSDDEGLMQEPDIVKIRFNFHWMLKVMVGILVHDQGVSSVNCSSSGXIXSISNLFIFRQNEGRWIVISSINXIDSMFGDDESFIMPCXNNLVCDYKSVNFDFXDVTNDLALYLVVDMSNVXSEEAEXRENTRNXVXAFXKAEVGSVSAGPKTGMMSPKKRVCEXDAVKXGPSGGDPRATVRMLSPRKRIRXEIAIKEEFSYLEELD
>L1-13_Mad_pol#LINE/L1 1295-5436 via tfasty with BvL1-2_pol, 1 frameshift. [Malus x domestica]
MKCLAWNCRGIRRKEFPSNFNFICSLAKLDLFCLMEIKVVVHKVPRNFYSKYFDNIFCCDPIGRSGGLCLCWNSTKVFVSIISSSPRYIHCSVKDLVTNLEQLVTFIYAFPQKHWQCDLWEEVLKLDPIHSPWCLVGDFNNIVDLSEKVGGNQTHTTDMNNFINFLNRGNLLSLNASGVPFTWTNCHTDHTVVFERLDRVVANPLWLNMFPNYHLHNYPIFGSDHSPILLSLNSSEEKNNYFSFKFEAMWLNHPQFKMFVQNSWHCDPTINPKDKFRVCAGKFKFLVCKWNKDTFGNLKEKKKELLNEIDELQKQIMSNNSVDLMMEKSLRDELNHVLLCEEIMWAQRAKTNWLQLGDKNTKFFQTVATIRKKMNEITKVKDENGFWWSVGQGLEQVFVHDFKKRFSCDSPPSGADLSNLADIIQPCVSNHHNESLLSLVTDEEIWDAVSSIGALKALGPDGLSVAFFHGCWDQIRDSVSCLVKDFFQNGSSLRLINHTNIALVPKIDNPETVSNYRPISLCNVSYKIITKIIIKRLKPLLDLCISQNQGAFAPGRAIQDNILIAHEMFAGFNRMKGRTGAMGVKLDLEKAYDYLNWDYIRYVLLRFGFDNRWVELVMECITSPSFSVLINGRPHGYFYPKRGIRQGDPLSPYIFIICMEPLIRHLNTLTNNPKSHIGILSSPRGFKISNLVFADDCLLFAKATPRGARNILQILNMFSKAAGQQINFHKSSLYFSKNTTSPTRIDIVNILHIQHKTTIGKYLGIHNIVFWKDQVNGNELLKRVKRKLAGWKASTLSRAGRLTLINSNLTGMPNHVMSCFKCPDKIVNKLNKECRDFFWGRDKKIFPVAWDSVCAPKKMGGLGVRRLDHFNNACLAKLGWKVMTEEDNWWVKLVKSKYLRKENFLDNKIRQNHSFAWKGILKSRDVILKGMRWRVGNGKDILFWSHNWVFPYPLFHLLPNIDNQNINWDLKVNEFIDNYCWDRRKLSQVVSNEIVRKICNITIPLQDSKDVLVWGPNTNGKFSVKSATWIQKGTLTQSTKHKLINKMWKLNIPPKVKMFAWLFIRDRLQTRKRLSHIVINSDKMCPFCNSVDEDQMHLFFNCGVTKLIWDLCSIKPGNFTNANFDSAVDWLNSLKHVDKEVPSDLSLCLLLCWQIWNDRNNMVFRNVLPIPARSKLLAISMGERYLKANGKGLRRNTDDTSTIVKWHPPDKSFVKLNFDGSVAGDKAAAGFVLRNHNGQIIGGGALNLDGATISEVEARALREGLLFAQRKGYTKIMVEGDSKLVIQSVLDRGATPWNLVPIIEDIKWTATNFDCIDWKHIYREANFVADAFARHGLLITDCHIWDHCIPSFALHALQFDSVRNSCTRGFFPLIYFSCLQK
>L1-13_XT_gag#LINE/L1 149-1084  [Xenopus tropicalis]
MGQHKAHKRASEAAARLEKYARETNQNGADSEQAANSPDQTVSTADNAAPARTNTTPGATPHSTEPTLHDVMAEIRAANSSCTSLINTKTEEIKIDLSIIKADLQKLRERTTAVESRVSNLEDSCRDLPNQYRNLQKQLADCLSKNDDLENRLRRSNLRFVGFPERAEGNTPESFLETWLKETFGAAQLSSMFSIERAHRVPTRQSPPGAPPRPLIAKLLNARDRDKILSLARTQGPLRFQASTISIFADYSMEVQRQRAGFQSCKARLREAGLPYAMLYPARLRVQADGRFTFFTAPQELNTWLDXRGIRP
>L1-13_XT_pol#LINE/L1 1543-5025  [Xenopus tropicalis]
MAIKLTSWNVRGLNCPIKRRLVLDFLKRHSTSIAFLQETHLTGSKILALKRPWIGWAYHATYSTHSSGVSILIGKSVPFRFDNLKTDPKGRFIFLHCYFYSCEILLVNIYIPPPFEGEVIHTLADHLALYPRALVLVAGDFNEVLLPELDRLWKHPLRSPPKSTQLSRLMTSLALIDPWRETHPGVPQYSCFTSARSALSRIDMAFINTAAIPYVVDTAYLPRGISDHAPLQLKLELPHKIKSPRPSINPVWLNILDNSKTVDDTINDFTTLNQTADXILPFWDSLKSYIRNSISAEITAYKKQAQKAIQALESQVSHLDAVAAASPSPDNLKLLNEAQNNYTQAIKQKALNKLYFTKTNIYEQGERAGRMLAHLAKAHTTPPPVPALRDPLGNLHTDPQAVQEMLVSFYTDLYKTKLTAPEPEINSFLASLALPTLPREYSNHLDSELTEMEIQEAVNSFPLGKAAGADGLPIEIYKRHSKILTPLLLKLFKEAXQLGQFPESLYEAAIVLLPKQGKDPQLCESFRPISLLTADVKIFAKVLARRLSRVITKIIHPDQIGFIPAKTAALNTRRLYLNLAHAPAGLGGRAIAALDITKAFDTVEWPYLWQVLTHFGFGKKYIQMVQLLYKYPMASIRINSLTTPAFALSRGTRQGCPLSPLLFAIAIEPFAQAVRAHPQITGFEYPGFTEKVQLYADDTLVYLGDRGPSLTALIELTQGFGRISGLQTSTAKSVLFLVDKQQPNEPLDTCPLQISNKFTYLGIQIALPISQYHNLNIESLFQWAQNKFKAWETLPVGPAGRIQLIKMFLLPKVLYALWHSPVYIPKKVFTQLNSLLSKFIWGTSRPRLRLTTLMKPRDGGGLALPDMYIYYVAAQLTHISPMVHSDISPPLYQLWALVSGNQGSPWPSLLTKKLPRNASSILVLQNRILQAGHKLIKLEQYPPQTPLWHNLDFPQLVPHNPPRIWYTLNLTTIGDVWADNQVIPLQQLCDSRQLPPTQWLTHYKLARALTSQSARSNITVANSPIIDTLLIPAHKGKISSLYKQLYKPQHIDPELRARDAWEGELGALLDVQWEWILATPKLVSFAYRHSLLQLYLIHRAYYTVQRLYAMKVLTSPLCLRCGSEAATLVHTLWSCPCLKQYWGEITGWLTAAIPGWGTGYC
>L1-14_DR_pol#LINE/L1 4-3059 Fragment, via tfasty with L1-10_DR_pol, 2 frameshifts. [Danio rerio]
IIKGPCRWRFHPRWLHDPKFMEFIGTQIDLFFKTNLKETSASIRWEAFKAYIRGQMISYTCSVNRKRKMELQNLEERIRKLEEDIYSDLSNSNILKQELLILRAKYNEISATKAEASLIRLKQTFYEYGEKASRLLSWQIKQLQSSKAIHNIYTTAGNLTSDPDEINEIFSKFFQMLYNTESSECSMDQTLFLDDLLIPSISIEAKKKLEEPLTSKEILNAIVNMKSGKTAGLDGIPIDIYKAFKDKLAVPLLEMYEESMLEGCLPPSLRAALITLIPKPHKPLDRCESYRPISLMNSDAKIIAKILALRLEAHLPSLIGMDQNGFVRNRQAFHNIRRVLNIVHEMDGSKDTGILSLDAEKAFDRVEWSYLFDILSRFGCGQNFCQWVKTLYQSPTAEVITNNLISKPFNLYRGTRQGCPLSPLLFVMTLEPLAIAIRTHPSIKGIEIAGVEHRISLYADDIVLFLTKLKDSIPNLNKLINKFGKFSGYKVNYSKSSILFLNEQERQNPVIQHPYETSVDGFGYLGIKVTPQVKNLISANYTPLITQVNESLNRWMSLPLTTIGRVNTIKMNILPKFLYLFQSIPLTPPPSFFSNMKKAFIKFIWNNRRSRLRLLLLYLPYERGGLRLPNLFWYFKAAQLRSACYWFAGSPSIPWIQIERKCTGNLSLDTYLYSDSLKKLKQNTSNPFVRATILSWHESQVELGETPVLSKFSPIWGNALFVPGKSDKGFKLWFQKGLQKISDLYEDNILMSFETLKERYKIPQSHFFKYLQIRNFIRSKNHSYQCPTLSSLEEIAVKDPSAKYKISTLYSKFVNASKESTNHKRLAWIEDFQIDITENEWEESCLQAQTLSINTRFKLIQYNWVMRTYITPEMLNKFNRNILDICGKCLTYKGTLFHCVWQCEHLQFFWKEIIGVISKTIGKEIPVCPKICILGLFPPALSLKSYEQKFINLCLLHAKRLIAIHWKSTHAPSLSLWIKEMSSCIAMERLTYSIKQKMHIFYKIWDFFLHFLNNSALT
>L1-14_Mad_pol#LINE/L1 1871-5434 via tfasty with 6598399_Ath_pol, 13 frameshifts and 6 stopcodons. [Malus x domestica]
MDRLRLKLNFDRSFTVDSRGSSGGLCVLWKDEINLCLRSYSQNHVDFDVGVPGDTDYWRFTAFYGFPATCDRYKSWRLLESLAGNESKPWLCIGDFNEILQANEQEGGNVRQDRQMEGFENAVEHCRLMDLGFSGNKFTWFTTKGGGIKVRLDRALGNQEWMDLFPRFKVQHLNKTSSIMCRSAxLVGTHSNPREEAVSLxGMLAYAEGxRVRDGWNHGGARQCSRLRENxDDEDEAQxLGSSNARSGPREIREVEDKLTSLLGQPFTDESIEQKNELIGKLNRLLEQEEQFWRQRSKENWVKLGDRNTKYFHQKANRRQKRNCLYGLMDDNGVWREDRRGMEEVVVSYFTNAFSSNGVENFDDILCHIAQVTEEMNTSLDSPFTDEEIKCAVFQMHPDESPGPDGMSPGFYQKHWGVVVRMCVMGFGPCSYLVILRKINYTHVTLIPKVKDATMMTQLRPISLCNVLYKIVAKVLTNRLKVILPHVISPTQSAFVPGRLISDNYLVAAEVAHYMHKRSRVSNGLMALKLDISKAYDRVEWKFLEAMMHRLGFSDRWIRMVMLCVTTVTYSFKLNGDPVGYVHPERGIRQGDPLSPYLFVMCAEGLSALLTRAELDGDLQGIKVCRAAPSIHHLFFADDSFLFARGTVGECQNIKQCVAKYGVASGQAVNFEKSCVSFSPNLTSYDKQLLADCLGMRRVDFHDKYLGLPVLVRKSKKEIFAYVKDRVWKKLQSWRGGLLSSAGRELLVKTVAQALPMYSMQCFLLPKSFCEELNMMIAKFWWSGDPGKRKIHWLNWRRLCKPKHEGGLGFRDLYAFNLALLAKQAWRFLHDPEALVYRVFKARYFPTTDFLEARVTSNSSYAWRSIAASRPVLQKGLRWQVGNGKKVRIWKDNWVPRESCFRILTPPPVHWDVEATVEGLFWTESKQWNVQLLNELFSQEEVELIRGIPLSLRDIADRRIWHYERHGKFTVRSAYHVARGLMSLVGKGQRLSSSSSMWGEVMEEAVDACVPGKVKICAWRACLDSLPTRLNLCKRRVTIEEVCVVCGGQVESTEHVLRDCNVAVWFRGLGKEWNGQGVSFMNWLANLQLQGPTSGFELCLMLVWSLWKHRNEVLWNGKSLPRMRLCFEPRVGCRSFTSGISQRQEGYREVQKWRKPAEGWVKCNFDGAWSQRGTGEVLGWxFVITWGSFLL
>L1-14_XT_gag#LINE/L1 149-1180  [Xenopus tropicalis]
MGKNRQTSRPSAATPATDPRIQDGAAAPSHHAAPAESAAATSTGETAAKRLERFARHPSPPLQPRGMSPPPEIAPDNRETASHAATPGQPTPSAEPTLTEILHIITNNHSTLITKVDEIHTDFAILKHDIQKIRERTGEAERRIGELEDLTNPIPGRIDSVSKQLNALEAKADDLENRLRRNNIRILGMPEGAEGNAAETFVEKWLQSKFGEQAFSAAFAVERAHRIPGRPPPPGAPPRPLIARLLNYKDRDAALTAARKAGELLHENHKISIYPDFSALIRKQRAQFTEVKRMLRQRQIPYAMLFPSRLRVVDNGKTQFFESPETAISWIEGRPRDPPPHRQA
>L1-14_XT_pol#LINE/L1 1558-5294 via tfasty with L1-2_XT_pol, 1 frameshift. [Xenopus tropicalis]
MSSVKVICWNVRGMGTAIKRRLVFDFVRKEKPHIIILLETHLEGKKTLALKKPWISNSYHSTYSTYARGVSILITRSCPFSLTTITTDKWGRYVILHGLLHGRQYTIAGIYVPPPFEARLLHEIMEKITKLPPAPLLVIGDFNAIRDPELDRLKASGTPNINFSNWVSTYGLIDIWRTRNPDKKQYTCYSPGHNSLSRIDLALGTPDLDKLVTNANILTRGISDHSPITISIKVSTDPSDRTWRLLSPYWVTHPDLVEHIRNNITSYYEINQNSSTPDVVWDALKAYIRGEYISNIKALTTSLNSEISSLTQRVNELEAAYVNAPSEQNRQNWLNAQNALTLAQVEATKKHILYQQVNIFEQGDKNGKLLSFLARDELAQSTIPVIKNPSGEITTDLAEVNGAFRNFYADLYNTKIQKGEQEIDTYLHNTDIPTFEPQESQRLGTDITVQEVKDAISSFPIGKTPGLDGIPIEWYRTYKDQLAPHLTNLFNATLAGAPLPQSMCTTLIVLILKPGKDPTECASYRPISLINSDAKILAKILASRLAPILHKVIKPDQTGFMPGKSTDINIRRLYTNLSITHENVGNRIVASLDNEKAFDSVEWPYLWGTMKRVGIPPTYIQWVKALYAHPLARVRTNFKVSQPFPIKRGTRQGCPLSPLLFALAMEPLACRVRSDSEVEGLKVKDNTEVISMYADDTLLYLANPDKALRAALTNINTHTAYSGLKINWSKSILFAVDPRPPDAPTQTQGLTWSETFKYLGIWIHRDLKKFTDLNLVPVLKLTESKIKAWAPLPLSLYGRINLFKMILLPKLTYIFRQSPIMIKKKVFRTLRSLEITLFWNNTQPRIALATLQLPVRQGGLAAPNLFLYFLAAQLVTAWRWASPSTQNASTTLEAQVIGSLEELKNLLYRGTKYTKKATPLMSTTVRVWNIALNLFPSPPPHCSKYSPLWHNPKLKHFSTVPDPQAWARYGIKYINDIYTEGKLMQFQNLKEKYLLPNKMLFRYLQLRHAASYQFQSQTINTTPRRLEEYAHTPELRKPLSLFYSSLILAGPSPATKALTKWQKDIPTLDAEMWEDILDSCFEGMVCNRDKLLQLKYLHRTYLTPQRLHAMNPNISQTCPKCPAPVADYFHMVWSCPAIQDFWRQVTQTIQSRTSLIVPLNPITILLNQVEETTPRRAQRTLLSILLMYAKKAIALHWKSDSAPTIPFWTNIITKAAPLYKLTYMRRNCLEKFQKVWGDWLDAEEDE
>L1-15_Mad#LINE/L1 248-3627 via tfasty with OSLINE1_1_pol, 1 frameshift and 1 stopcodon. [Malus x domestica]
MLKIVEECWANLGVGPLPGQWVQKLNACRVSLSRWSRTKFHQRSQQIEALSRQLVELQKQWGNNFQDILEKQKQMADLQTQEASYWHQRSRVKWLREGDSNTKFFHHSTLQRRRRNMILKLKDDDGHWIEHPSRIRQMVEEHFQTLFKSGGSRNWGDLLECVSPGITEEMNRDLIAPVSDEEIRTAVMKMGRLQAPGPDGFQGIFYQTFWDTLKTDVQLLIRALMHEEVVPTTINSTHIVLIPKVPNPESVSQFRPISLCNYSYKVLSKVLANRLKVVMPNIISPSQNAFVEGRQIHDNIGIAHEMFHFLKGRKAKSKYELGIKLDMQKAYDRVEWDFLDAVMEKMGFCTRWRQLIMGCVSSVQSAILLNGQPGKCFAHSRGIRQGDPLSPFLFLLVGEVFSCLIQNAVQKNLLDGVQLGASGPVISHNFFADDTLLFLKADGKNCRNLVDLINKYCEASGQLVNFQKSSVYFGANIPKRVSADLAHILNVKAVEDPGAYLGVPAIWGRSKVKGLAFIREKILGKVQGWKHKLLSSAGREVLIKAVVQALPAYPMYMFKFPASVCQDFDSLVADFWWGRQGASRKTHWVSKEVLGLPKDWGGLGFRNFADFNDALLAKQCWRLLSDPMSLWARVVKARYFPNCSFWDATKGGWASWAWSSLLVGREVLRKGAHWQIMGGHDVRVWVDRWLPSLPLGRPEQLGEVAVSPNLRVHSLISQESRIWDIDFLLPFLSEEAKLAINCLPIGDSRYKDRLIWDASKNGRYSVKSAYRWLQLGLLLLVISGCQGRLIPKNLWNQVWNLPAPAKIRRFFWLSLHRGLATKETLFRRKICSIVSSxLLHIGQHGTIEHILLLCPWVRAIWFGGALNYRIDGESISSWADWLMEVLVRFPGGTEVRKWVCSYVAFTVWFIWRTRCEFVFNQVPILPFKVLLGVSSAVGAFWEAMGWSGGGAARPSARCGPIPLWIPHPDSFVKINVDASWSHASRSGFTGVVIRDASGQFVAAERFALSTPSVAVAEATTLLCGCKLGSSLGFKSVIVESDSKESIDWLSGDVEVGSWKAFPVLTRVKVESDAFQFCRWSWVPRSANGAADFLASRSFPEMGSRVWVHRPPSSLVFVLNKDGLPCPP
>L1-15_XT_gag#LINE/L1 148-1083  [Xenopus tropicalis]
MGQHKAQKRAXEAAARLEKFARETNQNGGAAERPASAPGSPAKTNAKPATGTANQRQXEPPXTSEPTLHDVLAEIRSANDSCTTLINNKTXEIKIDLSIIKADLQKLRERTTAVESRVSNLEDSCRNLPEQYQTVQKLVTECQRKSDDLENRLRRSNLRFVGFPEQXEGSAPEAFLEXWLKEIFGAEQLSNTFAIERAHRVPTRQAPPGAPPRPLIAKLLNARDRDKILALARTQGPLXHQAAXISIYADYSAEVLRQRAGFXSGKGRLRTAGLTYAMMYPARLRVQADGKSYFFTTPQDLQSWMDARGIPP
>L1-15_XT_pol#LINE/L1 1616-5347  [Xenopus tropicalis]
MAIQFTSWNVRGLNCPIKRRLVLDFLKKHNTSIAFLQETHLTGSKILALKRPWVGWSYHATYSTHSSGVAILIGKKVPFRFGSLKSDPKGRYIFLHCYFYACELLLANIYIPPPYDPEILLILSDLMSQFPHALVIIAGDFNEVFTPSIDRTWKQPDKAPPKTTQLARMVTSLALLDPWRIANPNTRQFSCFSTSYLSLSRIDLVLVNAAMIPYINKVKYLPRGISDHAPVQIQWQLPYKIKNSRPAINPIWLNILDNYTTVEASIKEFITLNQSSNPILPFWDALKIYLRNSISAEISAYKHQAKAAHKELEDQXSHLDRQAANLQTPETLTALREAQEKYAESLRQKALQKHYFSKINIYEHGERSGKMLAHLAKTHSTPPPIPALKDSKGTLCTDPSEIENLLVTYYKDLYSTKLQASAEDIRAFLEPLNLPSLPQEYREFLESNITDTETQEAIDSFPQGKAAGSDGIPIELYKKHAKSLTPLLTKMYEEAQLTGTLPESLYEAAIVLLPKPGKDPQLCESFRPISLLTADVKIYAKILARRLARVITKIINPDQIGFIPTKTTVLNTRRLYLNLTLTPNNTGNRAIAALDIAKAFDTVEWPYLWCVMKQLGFGPKFIQMVQLLYKSPKATLRINSLCTSNFTLSRGTRQGCPLSPLLFALAIEPFAQAVRKHPLIRGYEQKATIEKIQLYADDTLVYLGDTGQSLTALIELTAKFGSISGLKTNTSKSILYLVDEQNXNDPCGTCPLQVTNKFTYLGIQVALPITKYTELNLNPLLPWLQEKFKNWETLPIGPAGKIHLIKMFILPKMLYILWHSPTPIPKKIFTKIHSQFTKFIWGTSRARLRLSTLMRPRDKGGIALPDIYMYYLAAQLTHISPMIHQELSPPLFQLWAQATGYPEAPWHALLVKQKPSEHSPLIALQRSVLSAAHKLINYMGHPPQTPIWQNAHFPQLAQCNPPNIWRSLELNTIGDVWENGQTIPFMNLHKTRHLPLNQWLTYHKIKRALTTALPNNGPMVNNSPVLESLLLPNQRSKLSILYKLLSKPTYCDTEVRSRARWEEELGTIITDDQWEWVLNTPLIVSFSQRHKLLQLYTIHRAYYTVQRLHAMKLLNSPYCPRCKTEIATLIHTLWGCSHLKDYWDGVCGWIEKKIPEWGPGDARKCLLMLDLNTSLDLHTKIFITKALFQAKRILTLHWKDTEPPSMHEWKKAMDDLASLERTILDKKGQMLKFLQIWRHWVDTV
>L1-16_DR_gag#LINE/L1 Fragment 3-272 [Danio rerio]
GALKPRPSEGERPRIIITRVHFYQEKELILWLRRDRTLAYNGHKIFIFPDYTAEVMELRRSFGDVMGELRELKVSHSLRFSARLSFQHN
>L1-16_DR_pol#LINE/L1 717-4497 via tfasty with L1-1_DR_pol, 1 frameshift and 1 stopcodon. [Danio rerio]
MTTNNQTMNIVSWNVRGLGHVIKRSRVFAHLKSLEADIMFLQETHLNAANQCRLRANWISQVYQAPFNAKARGVAILFRKTVVFRLSSMVADPQGRFIMVIGHINSLPITLLNIYGPNFDDPNFFRKIFSIIPDTNTTNLIIGGDFNCYLDPLDRLSTKPPPTITSVQMLHNLIKSRNLVDIWRLQHPTDRDYSFYSHVHKSYSRIDYFLVASELISNIGKTKYNNIIISDHSPVTLQLENILPKRNYCWRFNPMLIQDPTFLSYLNDKMDEYFSTNDNGEVSDSVxWDTLKAVMRGHIISYESSKKRALNSRLQEIENILPNYEQAYKKSLSNSDYNKMLKLKYEYNSILNRQISNLLLKLKQKHFELGDKPGKLLARQLRGEQANKVIHMVKTKTGDLITNPDEINGCFREFYSDLYTSKANHNDPNYDNFFSKLDMPKLSEVSKLELESEILIEDILKAIHAFPSGKAPGPDGFGCEFFKTFSKKLAPYMLRMLQDSIKKNTLPDSLYDANICVILKKGKPETDPANYRPIALLNFDQKVLTKILADRLARHISTIIHPDQTGFIPGRFSFCNVRLLLNILYAKDKLTNKPAAILSLDAQKAFDQIEWPYIFETLRQFGFGDKFINWIKIVYLRPSSSVLTNGIRSNPFVLQRGVRQGDPLSPLLFNIALEPLAVGVRTNPHIQGISLGNAESLISLYADDVLLYISDPVSTIPKILNYIDSFSKLSGYSINWEKSEFMPLTNNLSDTFLNNLPFKIVNNHFTYLGLNIPKNPKHLFKLNFLDMINRIKANIERWKLLPLSLIGRVNVIKMVVLPRFLYLFQNLPIYLPMSFFKQIDSIILSFIWNYKIPRIAKAHLQKNTDSGGLGLPIFKHYYWAANARALTFWQRGVLEDVTYETSPLWVYAEAISVPESSLPTLLFTECKLIKKQGSCNFVVRNSLRILNQINKFYKLPKVSVNTPISHNPSFKPSLIDSTFTAWKRKGLSRIGDLYIDNQFASFTQLKDKFSLPQSHFFRYLQIRNYVKENISQFINKPESHIIQKLLSSNPNTRHLISSFVRVFEAPICTKHIKIAWAMDLNEEVADEIWEEALSRIKKASINSRHKLIQFKVLHRLHFSKTRLSKIFPSVSPKCDRCGRAEGTLAHLFWFCPVLYEFWSSIFELFSSAYGTTIQPDYNLAIFGYSNIMDTFPSTQQQALMVGMITAKKMILLNWKSPKAPCFKRWLNELLYVIQMERLRLETSQKKAETTWGPILRLLGI
>L1-16_XT_pol#LINE/L1 927-4673 via tfasty with L1-2_XT_pol, 2 frameshifts. [Xenopus tropicalis]
MAQQNRNLTLLSWNIRGLNDRIKRSIVMGQLRKSGADVIMLQETHLIGQRVRALKRNWIAAVYHAEFSTYSRGVAILVRKNLNFHLITDRAGKYLILKCTIQGTXYYIPPPAELQILSEIIQKVAILGSFPTIWCGDFNMVPNPSIDRLRPVTSDSISFPAWIEATNLTDVWRWKHPQLRQYSCYTIATSALSRIDLMLANPEFLKRVDKVYFTSRLCSDHAPLILSLTGNTNNPSQMWRLPPKWISTPKVAEAFTPLLTEYWEQNTDTASEQIIWDACKAFTRGLYISLIATNRRENDANINTAKISLEKAEQKVVTDPNNTYKEELANAQRHLDSLYVEKFSQRELYRKAFWFEKGGKNGKLLAILAKDDNPHNVIANIKDDNGNTLSQQEHIAERFKQYFQSTYAALPPLPQEQLCNFLDSIELPSIPPDSKMHLDRDITIEEIEEAIADMPPGRTPGPDGLPAEWYKAHSQILSPKLCTLYNNITDTNVLPESCYMAHITLIPKVGKPSDDCGSYRPISLLNCDTKIFAKVLANRLKRIVRSVIHPDQTGFMPQNATDINIRRLFNNLEYDHDNKGNRIVVSLDTAKAFDTVSWGYLWEILRRFGLGGRYRAWVRALYWQPQARVLVNGRLTDPLPLERGTRQGCPLSPLLFALAIEPLATLLRDSPNIPGLQAGRLIEKVSLYADDMLLYLANPNEALSNALSQIEEFGIYSGLRVNQSKSLIFPIDPLPPPQAKQIGQLQVVQSFKYLGVVINKQHTKFEEGNLTPIVQNLSNKIDTWAQLPLTLPGRINLLKMVFLPKFLYIFHNSPVPPRAKWFKRIDSLILRFLWAGEHPRISLKTLQAPVTQGGLALPNMRLYYLASQLIYVHWWLTPHQDNTSTLLEANILGSLEALANLPYRGNSKHYTTTTPMRTVITAFQKALKHVQGPQQMWSRWTPLWGNCSLPNFTSLPNIAQWASHGVKHLQDILTNGDIKHFQTLRESHQIPQTMHFNYLQLRHAFHSQFPTRPVELKETTLEKYIRRENLTKPLSWYYTILWQANPDPLAKVREKWMRDIPSLTEETWVDALRQIPDLTISLADRYIQMKFLNRVYLTPYRLSKMFPQTPDTCIKCDRETGSYIHVFWNCPAVQVFWKEIVNYISDALSFPRILSPIVCLLGVAEDLGLSHHSRLCYLQLLYYAKKAILLQWKSLAPPTLPFWRTLVNNTLTNQKLTYLARGCPKKFDAIWGPWIAFHETPGNTADNIP
>L1-17_DR_gag#LINE/L1 154-1053 [Danio rerio]
MYTSRKQDSSPSTTPSGKKKMKLASTEANLTDVMAEALSKQQISLETTVQNAIRAAMEDVKSSLIELRQEVQSQTNTVRDLISKVDKIQGETRQIKKDLNVCKTEQQNLTSKIAELEDRSRRNNVRLVGLPQGREGDNPIGFLQKMLPIWIPALRNKGPIEIDRAHRIYGSGKSRTLLFRVLRYPDRQAILQGAREVMKTEAIRDQDHLLRFFADYSGFTSRKRQAFGSLQRELHALGIPNFLIYPAVLRVNHGGNQQSFDSVKKAEQFLEEVRNGHASGVRRKLSFQGPSAPSESMDE
>L1-17_DR_pol#LINE/L1 1612-5397 [Danio rerio]
MDKYKIISLNVRGLNSPNKRAKLLIYLRRKRVDIALIQETHLKNSDVQRLQNKFYKLAAFSTDNTKTKGTIVLISRICNIKIDRQSQDQSGRLAYVCTNIRGKKIAFVSIYAPTIFEATFFLKMANHLISLIDYSLIIGGDMNAVIDPVLDRSSSCNQVQLNSSAALKNFVKALNLVDIWRSWNPSSRDYTFFSTRHLTYSRIDYLLCSKDLLSYFDQIMILPAILADHNPLMVDFNCNSFAERSLRWRFNTSLLLNSQFDVDFKAKLAEFLLFNIGSVEDPIFVWEATKGFIKDFSIAFATNLKKMQNQRIDYLEKECKSLEYSLKSSFSKLTVNKLQSSKTELNDLLRRKAEFLLHRTRQNYYSNGARPSRLLALRLKQNQAKAYIDVINHPAKGPVRNTKEINSAFSDYFSKLYISECTLPSHNCASFLHSLILPQLNNEEAEQLGQPITLEELKEALQGAKKGKAPGLDGIPAELFLKYFDLLGPIFLAAIHEAVNTGAFHPQLNIALISLIPKKGKDHSNCANYRPISLLNTDIKMYARILALRLQRYINKLVHPDQTGFMPGRLASDNIRRLLHVIHEARDCPTPAAVLSLDAEKAFDRLEWDYLWSVLEVFGLGTNFINMIKVLYRNPTASVITNGLHSSPFNLGRGTRQGCPLSPMLFALSLEPLAQLIRQEDICSFSVKSHKQCISLYADDILLFISDLQTSFPLILNVFGKFSLFSGYKINWDKSSMLPLNSIAKHIKLPYNVPIRNSITYLGIAVQSSLQTIPDANYLQVLSRVEQDLRVWTSMPLSLHARIASVKMNILPRINFLSSMIPLPAPKKFWHKLNSMIRKFIWNGKQPRLKFETLQRTKENGGLALPNFELYHRAFQIKCIHVWLNPLSRVPWRQIEMKLADKYRLQDILFSGLNNKQCIQAFGPIIGNTIVNFKLMEKYIHHSPKWHIHTPIWNNNDLRSGGAPFLSRKWMQKGIYTLKDISGSNGILSFQELCERYETEPSSLFLYLRLRSAMKAYGVPWGDNLPTHPIITWFDLSFTNHFTSWIYRKALEGTAKNLAIQRCWETDCQLEEGVTDWERVWQNIFTSSKNPNHQLIHYNFCHRTYWTPLKRHRINASFSPFCDKCPNQELGSFFHMMWECEKVQRFWNEICVILSKIIEYPVPLNPSVLLLSDDSTLNLTKLQKAVWLAGLTSAKKLLAQHWLPPHNLDMYKWLVQLQDIIMLELSTARVNLVQMSTLQIWTLAADKISLFIAQRNDQDPE
>L1-17_XT_pol#LINE/L1 1941-5672  [Xenopus tropicalis]
MATVKLISWNVRGLNDKVKRALVFNYLKSHNPHILMLQETHLIGKKVLALQRPWVSYAHHTTYSTYARGTSLLVRKGLPFDILEVRSDKSGRYQIIACAIAGYLILLINIYIPPPFTDAVLQEIYTAATQLPPAPMCIMGDFNSCFNPTIDRLAATTATSSKLANWAAAYNLVDAWRWKHPTTQEFSCYSATHQSLSRIDLALLSPELLPKVREIKFLPRAISDHAPLFLSLEILPEPTSRQWRLNSLWLKIPEITXESEEAIKLYWLDNQHSASPLVLWDAFKAVMRGALKAAITKARSHSKDILLDLETAVSSYETAYTTDPTPENHANFADALRRLNLHRINLTKKQLLHTASTMFAYGDKNGKPLAFLAKPLESTTAVPKILSSNGETLLTPIDIAAEFNKFYASLYTSTAHYSNTDLHNYLNKIPLPKLSRMQSRYMDSPITQFDIAEAIMSLPASKSPGPDGFIVEWYRTHIREIVPKLHETLLYAFEEFSLPKSFSEATIVVIPKPGKDPTLCSSYRPISLLNIEIKILAKILAKRLAKVISTLVEPDQTGFMPAKSTSFNLRRLFLNLQLPHENKGSRLVVSLDTAKAFDSIEWPYLWEVITRMGFGPSFVKWLKLMYSEPKAAVKVNGILSTPFQLTRGTRQGCPLSPLLFALAIEPMAIQIRHSQQIKGLIYKTVEEKISLYADDTLLYLADPNGSFQTVLHIIKSFGTFSGLQINWEKSIIFPLDGQIPTMTDPDCTLKIANSFKYLGITIHKEPAQFLEHNLRPLYNKFSETLKHWTKLPLTLIGRINICKMIFLPKFLYQFSNTPCHIPKSFLLEIDRTQSAFIWGNKSPTLSRYTLNAPQDQLGLASPNYELYYLASQCAHVANWKVFDPENPASILEALYFTSIESIHNALYRTRKDISPLLPVSDATKKAWDSMTLLTNKTGIISPDTPLWGNSNLPHFASFPEAGSWAKLGVKRMDHLYTNGELHTLPLLQQIIPRPGLSDLRYAQITHLCGAQFQQPPXIQHLDLELLTAQTNKTKLLSNSYKILIAKRYDPRPRVKLKWETSGVHLDPEDWDEVISNLYQPLISTRDKLIQFKIIHQTYLTPQKLHIMGKTDSANCPRCKAHMANFMHLIWDCPVIQKFWHKVTEFMGTELNLPQILNPTTCILGLLDSLVHRRNTKLLMRLLLFYAKKTIALHWMGPSPPTLRRWITLVNSQLDLYKLTYLARGCLAKFENIWSPWTDSPATIV
>L1-18_XT_gag#LINE/L1 152-1102  [Xenopus tropicalis]
MGKHTQKTRSDAAAKLEQYARTIIQDGARSTPPSPDRQTQVEQEPSNPNAPTPNAQDILTAIANCQATLTATLTTKIEEVKVELSLLKHDVQNIRERTGAIEGRVSILEDRTTPLPNELAQLHKALKQATERMEDMENRQRRSNIRVVGLPERSEGQNPEQFAEQWLKEMLGMDIFSQQFVAERAHRVPTRAPPPGAPPRPFLIKLLNYRDRDIALQAARKKGDIQYQGTRVSLYPDYSAALQRQRGTFYGVKRRLRDLGINYSMIFPAKLRVMDGGKVHIFDQPAGAEHWIDSRASPPQRNPQRPSPAHSPRQQDT
>L1-18_XT_pol#LINE/L1 1692-5462  [Xenopus tropicalis]
MCTMAGPNIKLISWNVRGMNDKIKRAVILDHLKKLKADIILLQETHLVGQRVRALNKRWLSPTFHAEYSTYSRGVAILFRKTIAPQVEKIVSDRYGRFIILKVTISMKTIILVNIYSPPPGELTILQTILGKVAELGDHPTFWLGDFNAVPDPTIDRLRPLKGDTSALGDWLRATNLTDIWRWLHPTVQQYSCYTVTTSALSRIDLALASPSALQMVASTSFAPRICSDHAPLQLELRLSEGKGPRQWRLPPKWITHKFVQDAFKSQIKEFWEINAETAPQQVVWDTSKAYARGTYISLIKEARRLQDSDLETLRKTQGEAEKAYANDPSDTIGATLEITQRDVNLAYVHKHTQWELKRAASWYEKGDKCGKLLAILAREPTQMTSIPRLITPSGQEVLTQDRIKAEFVSFYTTLYQSKINYPPETLTQYLSEIPIPQLSHRDAEALNREITLEEVTEAIDSFPNGKSPGPDGLPIEWYKANKDIITPQLCNLFNKITQGAHLPESAKLATISLILKQGKPPERCESYRPISLLNSDVKILAKVLANRLKQVIELLIHPDQTGFMPSRATDINIRRLFTNIWAKHDDTGERVVVALDTEKAFDTVEWPYLWALLARYGLGPQFITWVKALYDSPTARILVNAELSQAFPLERGTRQGCPLSPFLFALAIEPLAIRIRNNPDIQGLKLQRVEEKISLYADDMLIYLANPKQSLTELLTEVLRFGGLSGLKVNWTKSLVFPIDRESVRDPLHGPQLQWVTSFTYLGIVIHRDLTQFTELNLTPALKSLRTKLHHWASLPLSLPGRINILKMVWLPKFLYIFHNAPILPTKKWFREIDVCVREFIWAGERPRINMPMLQSPVKKGGLALPNFLLYFYASQLVYARWWLNPDPNNQATVLEAAVISSFEALANQLYRGLPPIYPLTPPMKTVTQVFARTVGLFHQKAGSWSKWTPLWGNNSLAQFKSFPDANLWAAAGVKRLNDVVEQGALKQFAKLKEEFGLQNYMVFRYLQLKHAYQVQFPREPPXITESTLERYLHRPDLSKPLSWFYAILLQSNFDPVNHIKLKWAQDLPQLDNETWEDILEQIPEINIATRDRYIHVKFLNRVYLTPHRLAQMYQGYPDVCVKCNLAQGNYLHVFWDCPKIQQFWTEILTYLSSTLGLPNIRTATFCLLGHTEGLTIPPGDRLCLQQLLHYARKAILLTWKATEPPTLRFWTKLVDDILPRQKLTYLARGCPAKFEKVWSRWLADPRLHNTADQNG
>L1-19_XT_gag#LINE/L1 149-1099  [Xenopus tropicalis]
MGKSTHKVRPETAARLGQYARGANQDGARSPAPPTEQPAPADIADNQENPPISTQDILAAIATCQSSITATLTTKIEEVRVEISLLKQDVQAIRERTGALEERISTLEDRTAPVPHELSQLQKLIKQTTDKLEDMENRQRRSNIRVVGLPERSEGPNPETFAEQWLKDLLGAETFSPQFVVERAHRVPTRPLPAGAPPRPFLVKLLNYRDRDAALQMARRKGNLLYQGTRISLYPDYSAALQRQRSSFMGIKRRLRDMGITYSMIFPAKLRIVDGDRAQIFEHPDGATHWLETRPRTLNQQPARASPPRSPPKSPHN
>L1-19_XT_pol#LINE/L1 1733-5467  [Xenopus tropicalis]
MAGTKIRLISWNVRGLNDKIKRSIVLDHLKKLGADMMLLQETHLIGQRVRALRRHWIHPTLHAEYSTYSRGVAILFRKTSLPSIEKTISDRYGRFLIIKLTIASTPLIIVNVYSPPPGDIALLQLIMGKIASIGDYPTVWMGDFNAVPDPNLDRLRPNKNDTAALGDWLRASNFTEVWRWSHPNTRQFSCHSASTDSLSRIDLALASPPILQLVDSISYTTRVCSDHAPLQMDLRVPGGVGESQWRLPPRWIQHKFVQEEFARQFKAYWETNLGTAAEPVVWDAGKAFARGTYISLIKEARRKLDTTLTEAREALEVAEREYTRDPTEHLGEAFSIAQRNVNLVYTEKYSQGEVKRVANWYEKGDKCGRLLAILSREPSQLTAIPRILNPEGTEVHELDQIQNEFTTFYSELYRSKSHYPQEALTKYLDSVPIPKLTRERTEFLNQDITLDEVAEAIKSFPPGKAPGPDGLPIEWYKAHGDIINPQLTTLFNKIPQGTPLPDSSKLATITLIPKEGKPPEKCGSYRPISLLNSDVKILAKILANRLKQIIEHLIHPDQTGFMPNKGTDINIRRLYTNITTRHQNSGERIVVSLDTEKAFDTVEWPYLWQILARYALGDKFITWIKALYDTPRARIRVNSGLSQEFSLARGTRQGCPLSPLLFALAIEPLAIQIRANPKIKGLQLQKLEEKLSLYADDMLVYLADPRESLSELLQETGQFGEFSGLKVNWEKSLIFPIDPEGNRDPAHGPQLQWVDRFRYLGIEIHKDLSKXADLNLTPIIRSLKLKTQNWATLPLSLPGRINIVKMIFLPKLLYAFHNSPVIIPKKWFRNLDAIVRGFIWAGEHPRIKWQTLQAPLNKGGLALPNFQLYYYASQLVFAWWWLNPNPNNQAVVLEAGVISSFEALANQLHRGPSSIYPLTPPMKTVVTVFQKTVVNSYRKLSKWSKWTVLWGNDALPHLRTIPDVSTWAAAGVKHLGDVISAGGFKQFAQLQTEFGLHNRMLFRFLQLRHALNTQFPDNAPDITVTSLERYLRRPDLTKPVSWFYTILLQDDFDPLKHFAQKWQQDFPQLDEGTWKEILNQIPDTNISSRDRYIHTKFLNRVYLTPHRLAQIYPGHPDVCPKCNIEQGNYMHIFWDCTEIQXFWSELLDYCTTVLGLPNVRSPXLCLLGHTEGLSLNKYEELCLLQILHFAKKAILMTWKATAPPTLGFWKKLVNDTLPSQKLTYLARGCPDKFNKIWDNWMKDTH
>L1-20_XT_gag#LINE/L1 143-1027  [Xenopus tropicalis]
MGGHRKTSEAPASKMDKFVRHQNQDGGRASRPVTPPAPTPSTAREIDQAPAEPTLQEVLQAIRDTRTAVEVKIDTRVEEVKIDLALLRQDLQKVRERTAEAERRISDIEDATRSVPQAIAELQNQLKQSKARADDLEGRQRRNNIHIMGIPEGQEGTNPELFLEKLIKDHIGTGHLSPMFIVERAHRIPARQPPPGTPPRTMIAKILNYRDRDTILRQMRIQGDLLLGDAKILFYPDYTIEVQRQRAKFAEVRRKLRERGISYSTIFPAKLRLIDGNSTKFFSTPQEAMDWLERH
>L1-20_XT_pol#LINE/L1 1497-5237  [Xenopus tropicalis]
MSRVNIISWNIRGLNDKVKRALLFTALKQWSPAVVCLQETHLTGQKILSLKRGWVAQAYHATFSSHARGVSLLIKKNTQFILHQIYNDHYGRYIVLHCTLMTFEFILITVYIPPPFSIDVLNLILQKVALLPLVPQCWLGDFNNICIPAQDKLGSSDNKPTKLKIWADSVGLLDIWRIRNPLSRTYSCHSTTYQSLSRIDMVLTSPDMAPKIIDITYGTRSISDHSPLIIQIQPCIHLGTKRWRLSPLWLSQDEIAEKVQDSAEQYWEENSGSASPAILWDAFKAVARGTLIQSIKTVRIRTKLEVXQAIEEAEAAEANHIANPSTATXEQLTQAQIKLKCKLTEITQKKLLYASQRGFEQGEKTGKLLAYLSKISTPQTIIHRMLSEKGELITDPKEIADRFGEFYSNLYKSKVQYNSNALQKYLDTITFPKLSIAATKYLDRPITPGEIQEAISSMASSKAPGPDGLPIEWYRALGNKIAGTLCETLTQSAEQNNLPPSFANALIVLIHKEGKPPEQCGSYRPISLINVDAKILAKVLTTRLKTVITQIIHPDQTGFMPHRSTDVNLRRLYHNLQVPHDNSGSRIIVSLDSEKAFDSVEWPYLWGILEQFGLGENFIKWIKLLYXXPTARVQANNFISXTFSLTRGTRQGCPLSPLLFALAIEPLAIQIRHSKQVTGLKYGLIEERVSLYADDVLLYLADPGPSLTGILXXFSXFTVFSGLRINWTKSVIFPLEPTLTPKQAADSRLQWVNTFKYLGINIHLDPEQYIPMNITPINQQLATSLTHWASLPLTLWGRINVIKMIFLPKYLYIFHNAPTIIPKQICDAIQAQMRPFLWRNKVPRVSFATLTAPYDKGGLSLPNLFFYYLAAQLSYINWWFTQDLENQNVVLQANTLGSLEALKNYLLRKPKDHPPLPPCMKAPVAAWQAVLKLXKITFPILXXSLPLWKNSNLQHFYHSEAIWFWAPKKVKYLGDIVPNSKFIDMVELRDKINMPQLPMYRYLQLRHTVRAQFGATDLTLKEPPLLSLLRREDPSKMISHIYTQIISSGPAPFQSAYTKWQDDIPSLRPDQWEEITENLYKFLICTRDRLIQHKFTLRTYYTPNRLFRMGQIPAPICKRCGGVDGSYWHMVWTCPIISRYWVKITRYMIXTLALPPLCQPEICLLGLMDDLIPTNYARIMXRSLLYYAKKMLIMNWMAPLPPKKTGWIDLVNKTLPLIKLTYEARGQPNKFDRVWGGWLETHLIRLP
>L1-21_XT_gag#LINE/L1 139-1044  [Xenopus tropicalis]
MGKHTAKSATAKMDKYLSSSQPPPEANLERERAASPSPPIAEQAPTPQTEPTNRDLLQAITESHTSMTSQLDTIKIDISHLRQDMQNLRERTSEVELRVSSLEDTTRPIPGELSRLNKQIADAMAKADDLENRLRRNNLRMVGLPENSEGNQPERFAEDWLRQTLGADHFSAFLVIERAHRVPTRPLPPGANPRPLIMRFLNYRDRDAALSAARAKGQLTFNGAPISLFPDYSISVQKQRASFTGVKRRLRNEGLLYSVLFPAKLRIIDGPNTHFFTSPAEADRWLDSRGARGNQRVGSPRQ
>L1-21_XT_pol#LINE/L1 1941-5684  [Xenopus tropicalis]
MVDTSIISWNTRGLNSKFKRALLFDYIKQRKPALLLLQETHLVGQKLLSLKKRWVAQAYHAPFSTHARGVSILVRKGVLFECLGLNTDFYGRYIVLHCRIANQLLTLANVYSPPPSDNDLLGKIYALIASFPSAPICLLGDFNAVLAPHLDRLGQTGTQPTSLAKWADALGLTELWRWKHPGERQYSCHSPSYGSLSRIDLALASTDFAQLTVSAEYLPRAFSDHSPLHLTLNLSTKARRADWRLCPLWLSNVDVRESSQTEYAAYWERNQDTAPREVLWEASKVVARGTLISEITKARNKSKAEVKIAEIALGEAEKEYTNTQSEESHQLLNQAQRDVELAHTKLTRKRLLYTNQRIFEQGEKAGKLLAYLSKSRDSQTLIPRIRDSNGALVTTPPEILDTFTKYYQNTYQSIYHATPEELTHFLDRIEFPTLPPTEAAHLNAPITESEVAEALAALPSGKTPGPDGFPVAWYNLQGPLLVQHLHQTYLNAIEKGQLPPSFYDATVVLIAKEGKDPEICDSYRPISLINTDAKIFAKILARRLARIAPLLIHPDQTGFMPGKSTSHNLRRVYTHLQLKHDNSGSRALVSLDAAKAFDSVEWPYLWEVLRRFGFGPQFISWIQLLYKKPMARIKIHGTPSEPFPLHRGTRQGCPLSPLLFAFAIEPLALLIRQSPNITGFKQHTMEDKLALYADDLLLFLADTSTSMRAALQTLSLFGSYSGLHINKAKSVILPVDPILNPPDNTHGLRWVTKFRYLGIQISPSTTPYIADNIEPLITQLKSTTTFWAKLPLTLWGRVNLYKMIYLPKLLYKLHNSPVWVPKKTFQKINSILIPFLWANKTPRISWKSLTAPVSEGGLALPHLHLYFLASQLYYIHTWLHADEKDPGFLILAHQIGSPEAVQNTIYRRPSDYPKCPTTVTVPVRAWKAASKLLNYLTPPISPFLPLWSNSNLPHLQGLQDVHYWAQMGIKYLGDIVVDGKFPTLEQLQGKLDRRDIQIFRYFQLRHAFKAQFTTLELAPTPSNIELVLRNPCTGKLISRLYKTLLNSISPPFNTARRKWQQIIPNMTNEQWDESTDVLYTDLISIRDRLIQYKFIHQLYVTPLKLQKMGRSPEATCPKCHNTGSSFLHLAWECPPIQSYWSKVTKYMADNLGLPNLCTPEVCLLAQIEDLVPLNKTRSLYRTILYYARKVIILNWMGNNVPSPELWQTLINAALPSIRLTYEARGCPLKFERIWSPWLELNPGIPDGT
>L1-22_XT_gag#LINE/L1 31-924  [Xenopus tropicalis]
MGPNKAQKKAAETAARLERFAREGRPAQNGADEQPVSPSPSIPGSPARTEEPSLTDLLLEIKANRDVCTTLITAKTEELKVEFSILKHDIQKLRERTVEAEQRISSLENSYSPLPQQLQNLQQAVAQWQTKADDLENRLRRNNIRLLGFPERVEGPNPETFLENWIRDTFQVTNLSSAFTIERAHRIPMRAPIPGAPPRALIARLLNAKDRDSLLAMARAKGHLTYENAKISLYPDFSQEIQKQRSRFQEVKKRLRDQKLEYSMLYPARLRIQSNGTTHFFTTPQEASAWLDTANPQR
>L1-22_XT_pol#LINE/L1 1915-5703  [Xenopus tropicalis]
MARPLSILSWNVRGLNDQIKRKLVLDYVKKQIPEVIMLQETHLQGSKTLALKRPWVGWAFHSTFSTYTGGVTTLIKRTANFKLLTLQSDPQGRFLFIHCYLNMVETILANIYIPPPYIDNCITQLATFIATHPHARVIAAGDFNTVLDEQLDRLRKQNLPGLNKPSNLHTHMKNLGLTEIWRHTHPSETGFSCFSTSHMVLSRIDMAFISKDLLLNIQSATYLARGISDHAPLQLLWNSGYPPQRQNKPWSLNPVWLNIINNDQGLAASIKEFFQINLTDNNIDIAWEAFKAYLRGLLHSEITAIKRASTKEETEIEQQIQNITAQLQVNPSHQKLQSLRQLEATYNNCLQQKARRSLLFNRANFFEHSERAGKLLAYLAKTSESPPIITELYNTQGQLVTQTEQIKETLHNFYQNLYTSKQRNTREEINQFLTEITLPTLPQEFNETLIQDITETEIYEAIKAFPPRKAAGSDGLPIEIYQRFHKELTPHLTKLYNNALTAGTLPPSLYNATIVLLSKPGKDPKYSDSYRPISLLTTDIKILAKVLANRLGKVILQLVHEDQTGFMPGKSTALNIRRLYTNLTYPHNNTGQRTIVALDIAKAFDTVEWSYLWLVMEKFGIGQKYINMVKLLYKSPNASIRINGELTLPLALGRGTRQGCPLSPLLFALAMEPFAQHIRSHPTIKGLKIGPIEERIQLYADDTLLYIGDRGNSIQSAMATIHRFGCNSGLITNNSKSMALLIDPPGASEDLSTFPFKIVPQLTYLGVNIALPITSYTSINIDPMINWLQSKLKTWSSLPLGPMGRIHLIKMLVLPKLLYTLQQSPTWVPRINFVKLNSLFRQLIWANSRCRLKLDTLMRSKSNAGTSFPDMYLYYIAAQLSHLITWLEHSNHLTLKNIWAQITGLPTHPIGWLLGKPTKCAHNSTISPILVNICRIWKAATQIVRDKGVDPRTPIWFNSMYPTLTGTGHMKLWLDKGVETIGDVWTDNGTVPFRTLRQXWDIPNNQWLQYNRIKKALQLAHKKEPIVICKNRLLSHINRPSTKGLISILYALLLQESRAKPLENLRSRWEMDTEIILDDEWQEAQESHQTVSVCYRLRMIQLYTIHRAYYTPTRLHSIYPAIPDTCTRCNIEKGTLIHMLWXCXHIKPYWSAILDELDTXIQSTLPRTPKVCLLNVLSKAVTNQYHRILTSEALFLAKKLITQHWKSTVPPDIXNWENLMAETCKLEQLIYLKRGSPTKFHKIWDQWLDRHPLPPPPNAVNDQ
>L1-23_XT_pol#LINE/L1 1-3010 via tfasty with L1-10_DR_pol, 6 frameshifts and 3 stopcodons. [Xenopus tropicalis]
ISDHAPLLTNWENLKTNTHRRWSLNPIWLDILDIDEQLGNTIGEFFEENANTASPLVVWDTFKAYMRGIFHTEINMVKRNSAREQDELANQVRLAEIKASHNPSHQNLTALKIAQQTMLITxHxNEQGERAGKLLAYLAKQHSSPPVITELVDSEGTHHTKPEAITSLLTSFYNEIYQSKISNTERDTGEFLNNLALPRLPEDYKKQLDKDITLTELYEAIDSFPTRKATGPDGLPIEFYKRFKGCFKEVLGPHLLKTLLCAKEEGVLPPSMYEATIVLLNKPGKNPTQMDAYRPISLLSADIKILAKVLSARMNNVLSTIISEDQTGFMPGKSTALNIRRLYLNLATKHDNQGQRSIAALDIAKAFDTVEWPYMWQVLARFNFGINYIKWVQLMYNSPKASLIVNGMQSNKFPLERGTRQGCPMSPLLFALAIEPFAQAIRQHTGIQGWRIGDREERIQLYADDTLVYLGDWTESPQNLFSLTEKFAQISGLVTSPTKSITFLVDPLPDHQAPPEFPFPLENQFTYLGIKVKLPLTDFYELNVNPLMGKTLAKVKAWESLTLGPMGRIHLIKMILLPKLTYVLLQAPLQIAKSFFVTKLEVIFRQIIWAKSRPRLSLITLTKDKDKGGVALPNIYLYYLVAQMSHFATWVEEAHHQTLFHMQALLVGNKCTPFQWLSIKKPSNTVYQNVVMQHAxLIWTKATQILKFTGFLPQTLLWCNYWFPHVAKLGEMPIWMNRGRDGKMGQWLLKWFQLPSNQWLQYMQIQKKISLQNNKAIIQISQNSTVDLIMRGSTKGLISSLYANLHSKVFNKPLEILRGKWETDLGTLDDDGWDEVLESPLTASLNYRDRMIQYILYTEYYTPAKLHQIFPNTTSECPRCHVENATLMHMVWECSVLGKYWTKVLNKLDLILEVKLPRTPLVCLLGIGLKELLTQHLSVFTRDMFIFSKKKAITRKWKDSTPPKYSHWLSEVKHLCTLESLIYKTRGAPKKHEKIWGKWLEKST
>L1-24_XT_pol#LINE/L1 1219-4926  [Xenopus tropicalis]
MSEVSTQNLKALVLNQVYKSKPDIVLLQETHLTGQKLLALKRFWVGHMYHAPFSTYSRGVSILIKKTLIFELLQLHTDFYGRYIIIHCKINNQTVILVNVYIPPPFAIEVLQLISQKITALPPDPICLLGDFNATLHPMLDRTSGVDPATPQLTRWMEAMGLSDLWRDRHPSDRQFSCYSAGHATLSRIDLALGSVDFAQIVHKVAYLPRALSDHSPLWLEIQLGPPQGQRLWRLSPLWLTNQTVADTCTKEFGEYWEVNNNTASPLVVWDTAKAVARGTLIATIHATRESKKTEIKAAEKELFKAEQAHCQAKSKDTQDSLSKAQRDLDLLLADSTRKKLLYSKQRGFDLGDKNSKILAYMAKLTDPITVIPGIRTPTQEIVTDPTTMANMFAEYFKEIYSPQTCTSGINLEQFLGSSELPQLSPAEVKLLDNPLTKAEIDAVIADLPANKTPGPDGLPAAWYRLLADQITPKLLETYTYASQTEELPSSCYNAIITLILKDGKDPYSCESYRPISLINTDTKILAKVLANRLIKVITSFIHPDQTGFMPHKTTSINLRRLYTHIQLAHQCQTAGAVASLDITKAFVNWQYLWQVLEKIGCGPMFISWVKLLYKKPVAQVRVNNTLSEVFELKRGTRQGCPLSPLIFALAIEPLAAKIRQTPMVKGIKIGNLEEKVALYADDVLLFLADTNLSLQTALEILEKFGRLSGLWINKTKSVLFPLGSSVAGDNPPALSLVSRFRYLGIIVTTDPSLYTNENLEPILAKFKSVTPHWNKLPLTLWGRVNLFKMLYLPKFLYPLWNSPIYITNQFFKKLNSELISFIWANKAPRIAWLTLTAPKEKGGLALPHLQNYYFAAQLSYIHNWFNPDRSNSLTALHAAIMGSLEAIRNLPYRRQADLPPLPEVLTTPRKAWVKLQTKVRTPLSQLSGKAPLWRNSNLPHMRRLVDFQYWPQLGIRHLDDLLVENCFASLEQLKVKLNGPNIQFFRYLQLRHAFHSQFGTYQLSPTLLSWEARLWALDPTKLVSQLYSIIQASHPAPFNKAKRKWLATVPSLDEDQWDETTDNLYDFLISLRDRMIQFKMIHQIYVTPLKLKAMGKLERSKCVKCNMAEAGFLHLIWDCPKVLTYWTEVTHYIEEHLSLPGIRSPEVCLLGIIDELIPLQKSRTLLRSLVFYAKKVVIMKWMSPIPPTIQQWIELINGTLPLIRLTYNARGAPGKFEKIWEPWLDANPSISLPDD
>L1-25_XT_gag#LINE/L1 131-961  [Xenopus tropicalis]
MGKHTTKSKSENRLERYLQTSQETDKAADADPPSPVPEASLSTTQLETIKVDISLLRHDFQNLRERTIEAERRISAVEDTLQPLPNDLVRLREQVLTLTNRAEDLENRNRRNNVRILGLPEKSEGNRPEAFAETWLRDNLGPDTFSQLLTIERAHRIPTRPLPPGANPRPFIMRFLNFRDRDAALLAARQKGPLTWNGNAISLYPDYSPAVQKQRASFQGIKKRLRDAGIVYSMLYPAKLRIVAEGATHFFLSPNDADQWLNTQRRQGSPRNSPNRR
>L1-25_XT_pol#LINE/L1 2296-5622  [Xenopus tropicalis]
MGDFNTVVDPDVDRLPTATHQSSHFKHWLEAHGLHDIWRHKHPTEKQYSCHSIGKGSLSRIDMALGSPDFIQWVTEASYLPRALSDHAPLHLKIRTKIHPTHQLWRLSPLWLSNSVVAETCKTDYKLYWETNEGTSQSNTTWEASKAVARGSLISAIATVRKANKTEMNEAEAAVTLAEKTYSENTTDHNHQLLISAQRELELKQTACTRKKLLYASQRAFDQGDKNGKTLAYLAKVNNPTTMIARIKNNQGTYVTDPLDIAKVFAEYYQDLYTSRTACTEPDMEQLLQGISFPTLSNTESAYLDSPITLSEVADAIGGLPPGKTPGLDGLPASWYRVMSEELTPRLHSTLLEAKVTGTLPPSFYAAIIVLILKEGKDPELCDSYRPISLINTDVKILAKILAQRLNKVITSIVHPDQTGFMPNKSTAINLRRLHTHLQIDHSNTGSRTVVSLDATKAFDSVEWPYLWKTLSKFGIGPTFISWIKLLYLSPVAQIRINNVSSKPFPLTRGTRQGCPLSPLLFALAIEPYALLIRQTPSIQGLKYGRLEEKIALYADDVLLFLADHGDSLTNAINLADSLGAFSGLKINKTKSTLFSLEGPQMRDDIQGLKWVTEFRYLGIIISQDPTEYIAKNIDPIIHKFKEISGLWEGLPLTIWGRVNLFKMIYLPKFLYALHHAPVWLPPQLFKRIDSILFPFIWAHKAPRINRRTLMAPQDNGGLALPHLQYYYYASQLWFLHSWFSQEMDNPLTVLLASCTESMEALRNAPYRKAXDTLGLPPVIKVPQKIWAITKTLFPKLMHLPSPRSPLWRNSNFKHLLLLPDFQYWPKLGVRHLQDLLIEGIFPSLDQLKGKLDQANLEIYRYLQLRHAMISQFGSQVINVAELPFETRLWDPNPKKLVSEXYKMLLPXLGIPFDTAKRKWDGDIPQLDDDKWAEVTXDLYSFLISTKDKMVQFKIIHRTYITPMRLKVMGKNQHASCPKCQMTETGFFHLIWTCPTIXKYWTXVTKYLNEQIPLPGILSPEVCLLGLIEDLVPLNKTRTLLRSLYFYAKKVIAMKWMSPHPPDLHQWXQLVHSRLPLIKLTYLARGCPNKFENVWSPWLDAHSGENLRI
>L1-26_XT_gag#LINE/L1 136-1002 L1-17_XT_gag about 90% identical [Xenopus tropicalis]
MGGNKGPKKQTDTSQKLDQFIRRPVQDGAEPPSPPAPPEEHTADALALVLTAIATCQATLTARIEEVKIDLSLIKVDLQTIRERTTAVEAKVSQLEDTCAPFPAQLTDLRQQLKLQAALLDDYENRQRRNKVRVVGLPEGSEGKVPTEFAEQWLKQLLPHAAFTTHYTIERAHRVPGRPRPPGPPPRLFLIRLLHFRDRDAVLSEARAKGRLEHNGAPVSLYPDYSTQLQKLRSTFTGVKRKLRELNLTYAMTYPAKLKINDANRAYFFTTPEEAMEWIEARPRRSPRP
>L1-26_XT_pol#LINE/L1 1796-5533  [Xenopus tropicalis]
MSTVKIISWNVRGLNDKIKRALVFNYLKSYNPHILLLQETHLTGXKVLALRRPWVTYTHHTTYSSYARGTSFLVRKGLPIELIETRSDRSGRFQVVACAIAGNPLLIANLYIPPPFTDSVLQDMYKIILTLPPAPICIMGDFNNCLDPTADRLNPTTTHPSRLAEWARAYGLVDAWRWKFPDVREFSCHSATHRTLSRIDLALVSPDLLPKIREIKYLPRAISDHSPLLLSLELLPNPQTRRWHLSSFWLKNTEILAESANTINTYWQENQHTASPQIEWEAFKAVARGTLIAAIAKVRSNTKETLQALETATSNAETIFTADPTPHNYREFATXLRHLNLHRLELTKKQLLHATATTFAYGDKNGKPLAFLAKAPENTTAVPKIISATGETLISPTDIATEFSNYYSSLYTSTAHYSNQELHDYLNTLPLPKLTRQQTKYVDSPITQYEIAEAILSLPPGKSPGPDGFIIEWYRTHIKEIVPKLHETLMSSFESFSFPKSFYDATIVVIPKPGKDNTLCSSYRPISLLNMEIKILAKILAKRLIKVISTLVEPDQTGFMPSKSTSFNLRRLFLNLQITHENPGSRLVVSLDTAKAFDSIEWLYLWEVLTRMNFGPTFTKWIKLMYREPKATIRVNGILSPTITLTRGTRQGCPLSPLLFALAIEPMAIAIRHSQQVKGLIYKTVEEKISLYADDTLLYLADPHNSFTSAIQIVKRFGTFSGLQINWEKSIIFPLDGQTPQMTDPECTLKIANNFKYLGIHINKDPGLFLQHNLYPLHNRFKDTLKFWTKLPLTLIGRINICKMIFLPKFLYIFSNTPSHIPKKALQDIDRTQSEFIWGNKTPTLSRPTLNAPLDHLGLTSPNYELYYLASQNSHIANWKVFDTENPASLLEALYATSIESLHNALYRSRKDISPLPPVLDATKRAWDTMTHLTNTTELLSPDTPLWGNSNLKHFATFPEAETWAKLGIKRIDHLYTNGALNTLPQLRQAASRPDLSEFRYAQITHLCSAQFPTSPPQIQHTDLEELITQPTRQKLLSNTYKHLISKRYDPRPRVKYKWEASGIHXEPDDWDEIIDNLYQPLVSVRDKLIQFKIIHQTYLTPQKLHTIGRLASPNCLRCKASSANFFHLIWDCPDIQKFWRQIVQFMATELSLPQVYNPTTCLLGLLDSLVPRTYTRCLMRLLFFYAKKTIAMHWMGPTPPTLGKWISLINSQLQLYKLTYLARGCASKFEGIWSPWLESSATTTE
>L1-27_XT_gag#LINE/L1 146-1066  [Xenopus tropicalis]
MAPPKRQQDIRDKLEKVRRLDQDGGGNESPGTSAVSEAGNQDAISLTQTTELSTILEAIANCQTTVTAALTTTFTAKIDEVKMDISLLRQDMQNIRARVTQTETRLSTAEDIITPMQTTVQQLDAKLTAIQAHADDQENRMRRSNIRLVGLPERAEGPQPEAFLERLLITTFTREAFSAAFVVERAHRISPKPPVPGAPPRTFIAKMLNYRDRDTILRLARDKGPITFENTSISFYPDFSIELQKRRAKFAPTKKRLQELKVPYAMLYPAKLRINHNGKAMFFTSPEDVHTWLETSNRAPTSPRGRE
>L1-27_XT_pol#LINE/L1 1442-5251 via tfasty with L1-1_XT_pol, 2 frameshifts and 1 stopcodon. [Xenopus tropicalis]
MPQGNNKETVQALRILGWNVRGLNDKIKRATVFNFLKRYTPDVICFQETHITGSKTLALRRPWVGWAYHATYSQYSRGVTILIRKSVQFQMLAIQHDPQGRYIFLNCIINSHPLLLLNVYIPPPYHPDVIRKGAVFMLQYPNTPALWLGDFNNTWDTNLDKLPQQMPPQGVAPHHKXTSFAKLASEIGLHDIWRLHNPGQCQYTCHSATYKTLSRLDYALANHLALALAPQAEHLPRGISDHSPILITLTWYENKPLPFWKFNAYWLNLFPEIETQENEWSIFLDAQTPDTDPLLLWETFKAHLRGSLIAQVTAIKRTTTATELHISSQVTQAEATHTQTPTPHNYEQLKLREREYNNYLQVKAKRKLFFAKQNFLEHGDRTGTLLAKIAKANGTPPVITQIQDETGQILTNPQQINARFQRYYQQLYSTNSPFSQTETQSFLSEIHIPKFTSAHRAILNAPITLEEVKTAISLLPNRKTPGLDGLPSEIYKRHVDYLAPKLLETYNTAKMQGTLPPSMAEALIILIPKPGKDILDCSSYRPISLLNTDVKVLAKILAKRLSLVIHKIIHPDQTGFMPGKSTALNIRRVYEIIQAHQVNAKDEALVSLDAAKAFDSVEWKFLWAVLEQIGSGTEFVQWVKLLYCSPKARIATSGWTSEPFLLSRGTRQGCPLSPLLYALAIEPLAVKIRADNQIEGLRVAEYTDKIGLYADDMILFLKDTTHSLNRALTIIEEMGQYSGLRINWTKSNIFSLKGTENTDPPLDHPLIVVNTFKYLGINITRNPGDYLQENIHPLIKYVRDKTRTWGNLPLTIAGRVNLVKMTLLPKILYILxFMHSPIFLAQKLFQIITSHILTLVWKGTRPRLKLALLRNPTTAGGLALPHFHLYYISSQLTQISHWFHTQSQHSAKRMGFTGPVPTRDRIYHLLKGYSGCPTPRQTNTLMIQALRIWDKANKLVPHKTGVIEHYTPIWENRSLPECCTMQDTVLWKEKGIWCLGQVLDHNTIKSFEQLKQEYNLPNHYLFRYLQLRHALSTQYPSGYPTLETQPYLTAIQAGYTKGMISKLYSILLNPNTIVHTNRSKTAWQDNTGRIDQEEWEEALESPKYASPYTRERTIQTYILHRAYLTPLTLKHFRQNTDTTCPRCHSDNPHFYHLIWTCPILIDYWKQITQFIHDVMGSPVPLDPKVCLLAILEHLYPNTYKRTAITELLHIAHKHITSKWLSTESPTLNGWRTLVNQALPYREITYKNRGHPDKYDKVWGPWLENPRTTTH
>L1-28_XT_gag#LINE/L1 128-1066  [Xenopus tropicalis]
MGKHSQRGKADQSQKLDKYLQPPQPEQDHADDEGLRPASPNSLPSSQNPGTLEPTNAELLAAINNTHSSTTAQLESIKVDTSLLRQDLQALRERTTEAEARISTLEDATAPLPGQLTTLKQQIATLTARAEDLENRNRRNNLRLVGLPEGSEGKTPETFAETWLKQTLGEDTFSKIFVIERAHRVPTRALPPGAPPRPLIMRFLNYRDRDAAMVAARRKGQLTFNGANISLYPDYSQAIQKLRASYQGVKRRLRAEGIIYSVLYPAKLRIVHEERTQFFVTAEDADRWLNTQRFPPRNSPRHNGDVPRREAPE
>L1-28_XT_pol#LINE/L1 1687-5439  [Xenopus tropicalis]
MTGLTILSWNTRGLNSKFKRAIILNHIHKLRPDVTLLQETHLTGQKLLALKRHWVGHAYHAPYSTYSRGVSILIKKSVPFELLTIQSDFYGRYIIVHCKIQNQPLILVNVYIPPPFSINLLEQITQKIMTLPTDPLSIIGDFNCTVNPLVDRLTGTDPSAPQLQGWMAALALIDLWRNKHPIDQQYTCHSASHNTLSRIDLALGTVNFAQLLQDVQILPRIHSDHSPLLLKISWGFTTQHKLWRLSPLWLKNNMVAEQCTAEYDQYWDINKDSANNNIVWDASKAVARGSLISTIKGVRKTYKEEMKQKEQKYQEAQEEFINNKSDETHSKLVTAQRELDLQHVTLTRKKLLYQNQKSFETGDKNGKTLAYFSKITEATTVVSAIKGGKGNLITDPQEIASIFAEYFKEIYTQKNSAPQNNMKEYLDNIPNPKLTRQQRLSMDSPITPQEIEAVISGLPTNKTPGPDGLPAAWYKLLGKQITPLLTKVFNEALITHSLPDTFYDAIITLIHKQGKDPTNCDSYRPISLINTDAKILAKVLANRLLKVVPELIHIDQCGFMPHKTTSINLRRVFTHVQNAKRMQGGGLLASLDITKAFDTVNWDFLWAVLAKFGIGPNYITWIQLLYQKPNARIRVNTILSDKIELHNGTRQGCPMSPLLFALVIEPLAIAIRIDPVIKGFQVGQIEEKIALYADDLILFLADHNNSLTQALKTLDIYSNYSGLKINRQKCHLLALSGPEQEGTLQGLKWVRQFRYLGIEVTRDLSKYYDKNLEPILTKFKNDVVHWVKLPLTLWGRINLFKMIYLPKFIYPLHNSPVYITNKFFNQVNKVLGSFIWANKAPRVGWRTLTAPYQLGGLALPNMQLYYIASQLTYLHNWFNPDPDNPLTALHGNLIGSLEALRNAPYRKKRDITPLPEVLTTPMTAWAKLVKQNRKNIKGHSLQMPLWNNTNLQHFKELPDFQYWPANGVKWLSDVVIDGNFAQFNTLKEKLEKPNLQFFRYLQLRHVFKAQFGSLTIDTGSTPWEIRLWDPGGKKLLSQLYKVILKVTPSPFDKAKTKWDKILPQLNEEQWEEATDHIYDFLIATRDRVIQFKFYHQVYITPTRLRTMGRSPNAECPKCHNVNAGFIHMVWDCIHIANYWSGIMQYLNEQLILPRVKTPEVCLLGLIDELVPQNQPRNLMRATLFYAKKLIIMKWMSPIAPTIAEWVAMINKTVPLIKLTYLARGTPQKFDRIWTPWLDANPELTIPGTPPQ
>L1-29_XT_gag#LINE/L1 148-1056  [Xenopus tropicalis]
MGLNKAQRQAAEAAAKLERYAREERQDGAEAPLDYPTTSSGPAATPPAEPTMMDLLAEIKNTREACTGLITTKVDEIKTELSIFRHDVQKIRERAAAVEQRVSEMEDASRPLPNQIRELQTAVQSWQNKADDLENRLRRNNIRLLGFPERVEGESPENFVQRWLLDMFGADKLTSTFSVERAHRIPMRPPVPGAPARALIARLLNARDRDKILSMARTKKQLPFENANIAIYPDYSLEIQKQCFKFSEIKKKLRSANIDYAMLYPAKLRISMEGKVNFFTNPQEANAWLETQNLPGAPRGDQA
>L1-29_XT_pol#LINE/L1 1535-5275 via tfasty with L1-2_XT_pol, 1 stopcodon. [Xenopus tropicalis]
MGLSLLSWNVRGLNDPIKRKLVVDYAxKQQADITFLQETHLTGTKQITINKPWWGWRYHAAYSTYSAGVSILIKKSLHFQPITVKTDPRGRYIFIHARINASNYVLANIYIPPPYSDDCIQQLLAFITSRPQAQVICAGDFNTVLNPNLDRLSKRSPQPPHTTTNLLNITTTMGLTEGWRYTHPTALQYSCFSTSHMSLSRIDMVFLSQNLLVGIKECKYLPRGISDHAPLLITWETHGGGQNKRWALNPVWLDIIDKDEAIATEILEFFQMNQDSASPTIVWDTFKAYIRGILHREITAVKRETTQIEKELAQKVETCEIEAVSNPTPLNLQNLQTAQTNYATHLAQKAKRKLLFTKASYFEQGERAGKLLAYISKTNCSPPVITELIDQQGLRHTHPTEIATLLSRYYASIYSSQTSTTPMEINSFLLALNLPRLTEEQKISLEADLTLTELCEAIDMFPTRKAAGPDGLPIEIYKRFKEVIAPHLLQMFNYAITSGSLPQSLYEASIVLLSKPGKDPTQLDAYRPISLLTTDIKILAKILAQRIAKALPIIISEDQTGFMANKATALNIRRLYLNLATKHDNCGQRAVAALDITKAFDTVEWEYLWHTLQRFNFGPSLSKWIKLLYHSPKAAIVVNGSSTNYFPLQRGTRQGCPLSPLLFAIAMEPFAQAIRQATEFTGWKIGNREERIQLYADDTLIYLGDLGPSITTLTNITSRFARVSGLVTSLAKSVILPVDPQHLPGNQPNMPFPIVQQFTYLGVVIKLPLSDYYNLNVLPVKNYIQKKIKAWESLLIGPMGRIHLIKMILLPKLTYALLQAPCVIKKGFFTALDTIFRQLIWAGTRHRLSLDTLIKGKSRGGAAFPNIFLYYIAAQLSHIASWVEDTNHQSLYHLHKTLLGAHYTPFQWLLTKGSQPIAYPNQVIMHARQIVQKTLHIMQFKNILPLTPLWNNSYFPNLAKLGSNPVWERCGISTIGDVWQGGSMVSFDQLNKQLYHLPAHQWLKYMQVKRCLNAQNQGNAILLANHSLTDRIQQSSTKGLISNLYQELHAKLHNKPLETLRDKWEGDIGCCNDEEWDQMLESPLLISLNYRDRMIQLYFLHRAYYYPAKLHKLFPGSPSECPRCGTQQASFIHMVWECSVLSSYWNEVFDTIDTALGIQLPRSPRVSLFGIGIQEIFTRYQSTFINEALFIAKKLITRKWKQATPPSPAQWVLEVKRLSNLENLIYCKRGSPKKYHKIWDKWLDWVT
>L1-30_XT_gag#LINE/L1 149-1081  [Xenopus tropicalis]
MGQNKAQKRASEAASRLEKFSRETRHTQDGGEETVTQPPPQRQPRGEPSTPQGDPRTSSATSPTEPTLSDLLAEIRASKESCTSLICSKTDEIKVELSIIKQDFQKLRERTTLLERRVSSLEDISNPMPDRLQQLXQSINTCAAKSDDLENRLRRNNLRFLGFPERSEGNSPEKFIETWLMEQFGRESFSTAFAVERAHRIPTKAPIPGAPARPLIARLLNARDRDSTLSLARKKEQLTFQDAKISIFGDFSAEIQKQRARFLESKRRLRDMGLQYAMLYPARLRVIENGTTHFFTNPQDLCSWIDARRNR
>L1-30_XT_pol#LINE/L1 1619-5359  [Xenopus tropicalis]
MVKMLSWNVRGLNDQIKRRLVLDFLKKSGANILLLQETHLQGGRTMALKRPWVGWHYHAEFSTHSSGVAILITRNTPFRLGKVEPDPKGRFIFLHGFLQAQEVVIANIYIPPPYQDTCLIHLVSFIAKFPHAAVIAMGDFNTLMDPVLDRQRRANTTAQEASSNLQSLADSAGLTEVWRHLHPNTRQYSCYSQSHTVLSRIDLAFVNQAALPRVRAAKYLARGISDHAPLEIHFREADQTRKPRWSLNPAWLGILDNYQQIEAATREFISINEHTVGTLTFWDALKAYLRGLFNDEITAFKKQSRNAQHQLEFDILELEAEVAATPLPGKFKQLEKAQERYAKYMRDKALAQYTFMKLNVMEYGERAGKLLAHLVRIQSTPNAITLLKTEQGSLTTDARVIQQELTKFYSNLYTSTLDEANISKIDAFLDPLALPQLSPEYKAFLEEEVSLIEVQEAIDSFPNGKAAGADGLPVELYKRHAKTLAPVLLKTYNEALREGQLPQSMYQAAIVLLPKAGKDPTLPESYRPISLLTADVKILAKLLANRLKKIIGSIIADDQLGFMPGKTTAMNIRRLFLNLTIAHANSGERAIAALDIAKAFDTVEWPYLWKALDKFGFGTKFVNLVKLLYKSPTAFLRVGTDEAPPFSLTRGTRQGCPLSPLLFAIAIEPFAAAVRQHPNIVGWISQNRTDKLQLYADDTLIYLGDRGQSLNALIELTEAFGTVSGLKVSQAKSLLFLVDPQQRGPRPTPSPLPIANQFTYLGVEIALPITTYYDLNLGPMLEWMGTKFAAWGNLPIGPAGRIQLIKMFIQPKIMYALWHTPTAPPKTFFSKLDTTMRSFIWGKGRSRLSLPHLKRSKTGGGMALPDFRVLYLAAQLSHLCPLTPDGPCSALYSSWQELLPPYIAPWQAVLVQPSIPPHNLLVAAVRRAYVDARKTAGTCTIDPATPLWGNKVLGNLAXSPPPRQWLEAGLTSIQDVWDMGVTAPFAFLRQHRSLPASQWLLYHRVHTTLKRLHKRSLLATLEDPLLSLIRTGHKKCKISTLYKYIMEARQKLSTMKCREAWEEDLGPISDDQWKEVLASPKTVSINCRHEMLQLYLIHRAYYTPAKLHKIYPESSPLCLRCQAETGTLLHTLWSCPLLTTYWATILNKLNAVTDSDITPSPKVCILGITSSLELNHGQKTLITKALFQARRQLTLNWKGQTAPSYDSWLNAMNEVCLQEKHSLCRKGKNVTXTNIWGSWEAHTARQS
>L1-31_XT_gag#LINE/L1 139-1032  [Xenopus tropicalis]
MKGKNQNNKRKSEAPTRMEQFVRQAAQVTEPSNMAPEPAPPDPNVQTEAPQSQPTLHDLLRAVQQCQQTCQATIMTKTDELKAELSLIKHDMQRIRERTTAAEARISALEDTSRPLLQTTNDLQQQVEMWRKKVDDLENRARRSNIRLIGLPEREEGDHPEAFVERLLKTWAGPDNLTTAFSVERAHRIPSRPPIPGAPPRPLIARIHNCKDRDKLLTIARKNGQIKNNNATISLYPDYSAELQRQRARFLDIKKRLRQKEIPYSMIYPSKLRVQTTAGAKFFESPTDACNWLDSLGR
>L1-31_XT_pol#LINE/L1 1596-5348  [Xenopus tropicalis]
MLGSPLLTMAXNLKLISWNARGLNDPIKRRTALTYAKKQNPDILFXQETHLTGSAILALKKPWVGWSYHSTYSVYTGGVSTLINKRVIFTLLNLKTDHKGRYVFIHCKIFSRECILANIYIPPPFSEEVLIELTKFTLQYPNATILTAGDFNTTPNPIKDRWKRDGTSGTGDNHKFNXWLHSLDLIDTWRVFHPSAQQYSCYSKSHLSLSRIDLILTPKTLLPTIQSIEFLPRGISDHAPLEMVWGWGCAPGTRSWRLNPTWITIVGKKEDIESTLQEYFVNNPPPEETPLSWDAFKAYLRGVYISEINIIKSKTKTTEIHLKAQITQAEQAVIANPTPHTHLNLQTAQEEYQKFLEAKTKKQHLFLKYNIFEQGARTGKMLARLARSETSPPIISSIRNTSGQIIEDPRAISKVFGTFYEQLYQTQLNMPTHQLSHYLDQIQLPTLKREQKEALEADITITEVLEAITTLSSGKSPGKDGLPIEIYKTYADTLAPQLLQVYTAALTRGELTPSMREASIIVLPKPGKDLLECGSYRPISLLNCDIKILAKILARRLQQVIDSLIAPDQTGFMPHKSTAINLRRLYTNLAIEHDNGGQRALAMLDIAKAFDTVEWPFLWRVMAKMGFGPHYLALTKLLYSNPLASVTVNGIPSPHFKLTRGTRQGCPLSPFLFAIAIEPLAAIIRNDPGIIGWKIGPLQEKIQLYADDSLIYLADCTTSLNKLAHTLQEFGDHSGLRVNLTKSTLFLVDKQKSNPEHNQHSLIVTPEFKYLGIKVSLPISTYWEMNILPLLGMMETKFKQWAGLPLSPQGRISLIKMTILPKVLYILTQAPIRXPKSFFKKLDKLMGPFIWGTGRRRLKLDSLKKAANSGGASLPDFELYYLAAQLAHAKPWFTPKPTCPSSKLLMALNSPERPILQTMLKTPPDKQQNTTHPIISLTRTIWSRAEAICTHHAKHPDTPIWNNKALNEFTHIEAGRIWNNKGVQLLQHLIHDNSLKPFDRLQREYEIPDTQWLTYRQIQHAYHSDPPKVGKSPFCKILEVQTSQHLISTLYSTLRFCKYEKTNAGLFRAWQTDIPSLTDDEWLDALEAPGFVSPNANHKMIQKLILHRAYFTPLRLHRMNPQISPNCTRCDLAPGTFIHMMWECNKLQVYWRKVFTTIVETTRVQLQPSPELAILGACDDSMGNKGQLTVIRQGLFQARKCITHHWKDVHPPTHQTWLNQMQKYLDCMQYLYTKKATPEIYEKTWGTWPPP
>L1-32_XT_gag#LINE/L1 153-1106  [Xenopus tropicalis]
MGRNGNKARGEPANRLEQYLRTPQHGADRAAGPPDLQADISAAAPERSDDEPEPTMSQVLAAINNNAAALNTSMATLSERVDGIKVDISLMRQDLQNVRERVGEVETRVGTLEDMTRPMSNEVQNLLRELRQTQAHVEDLENRHRRNNIRIVGLPEKEEGEHPETYVEQFLIKQFGANAFSPQLVVERAHRVPTRPLPPGAPPRPLLAKLLNFRDRDAALAASRRNGPVTVNNSTVSIYPDFSPSVQKQRATYTAVKKRLRDEQLVYAMLYPARLRVQDGQRTLFFTTPAAADQWLDQRGRRRGPPNSPSHKDPGPSR
>L1-32_XT_pol#LINE/L1 1581-5360  [Xenopus tropicalis]
MSSNLIKLISWNVRGMNSKYKRASIFNYLTKKDPPAIICLQETHLEGQRILALKKYWVAHSFHSTYSSYARGVSILIRKGLPFVCLAVKSDPQGRFFAIHCKIYEVTLTLCSLYVPPPLTLGTLNAVMNKLLELPVAPLCIIGDFNMVMNPQLDKIPIGQTAHSTLSRWSEAMMLKDIWRLKHPRDKAHSCHSVTHKTLTRIDLALVSQDFTPLVVGAVYLPRVLSDHSPLQLTLDTQAPTQSRIWRLSPIWLKIPNILEASNEATIQYWEENANSTTPDILWDASKAVIRGKLIQAIKRHRKQRQEEVDLLEANLMQAQSDYTAQPTDNTYQAIQSAEQALTLKQVELTKKQLLYTQQRIFDQGEKNSKLLARLAKLPTETVTVARIATTDGRNITNPKAIADEFAVYYANLYTSRGGATTDQIRGYLSTIPFPTLDNHQSDYLNAPITKSELLQALQALPPQKTPGPDGYPAEWYRAHAEHIIPHLLDTLNEAKDRDKLPQSMREAIIVVIPKAGGDPSQCGAYRPISLLNVDVKVLAKVLATRLSKVITTLIEPDQAGFMPQKAPDINIRRLYTNLQVTHENFGNRAILSIDWEKAFDSVEWTYLWELLPHYNIGREFIDWLKRLYKEPTARVRVNGILSSTITMHRGTRQGCPLSPLLFALAVEPLAIAVRKAANYKGLKLREVGEKISLYADDVLLYLQDAGPSLQIAMELIQTYGTHSGLKVNWRKSVIFPIDQPATPIRPPHPDLQLADSFKYLGIHIHKDLSQYIALNLEPIIQHYARTAEVWQRLPLTLWGRVTLFKMIFLPKFLYVLRNTPIYLPKKLFLRIDKITTSFIWNNKTPRIAKETLCAPQERGGLGLPNLQTYYIASQAAYIHWWLAPDAENPNMALQATILGSVEAMENAPYRTQGDIQHTTPIIKLTHRLWLMALRKLGIDPPLLSPRLPLWNNSNLIHLTQLPQFQIWPIAGIKRLKDILEENLFPTYTDLRSRPLLTDVKLYQYLQLREAFVDQFRETSLVYENYPIENLLTQECPPKLVSRLYSLLNSASQAPFHRTYLKWRSMLDDLTEEQWEEVTENLYHFLISSRDRLIQYKFLMQIYYTPVRLKEIGRRETDKCHRCQTDQANFLHMIWNCPMIQDFWKDITTHMSSHLAYPPLLSPHACLLGILEDQVGSIASRLFARSLLYYARKCIILRWMGPKPPRKKQWIKLINGALPSIKLTYLARGCPAKFDKVWQPWLDVEGDPLPTTADTPNLPD
>L1-33_XT_pol#LINE/L1 1631-5380  [Xenopus tropicalis]
MAVNVISWNVRGLNNPIKRKLVLDHLKRNNVHIALLQETHLVGSKTMALKRPWIGWAYHSSYSVYSAGVSILIHKQVPFKLENLSIDQKGQFIFLHCKIGQHELIIANVYIPPPYSDNSIKLWADYSAKYPHALNLLAGDFNTVLTPEVDRLRRVGANTVEPATNLGHLMEELSMTEVWRHQHPHEKQFSCFSASHLVLSRLDMMFANASLLPKITQTKYLPRGISDHAPMLAVLSIINPPAATRWSINPVWFHILRNQTELDEEILEFFQVNNGTADTLTVWETFKAYVRGTLNSQIKAHKKKTRAAVVETESKIEQMECQATQNPTESNLKLLQQWQEIYAKQQWEISQHKLFFSKINTFVHGERAGKLLAYMVKNQSSPPAITMLKDNNGQAQSDPEMVKDILSSFYKDLYSSKLLASQENIKNYLAALKLPKLNQDYKAFLELPITTEEIADAIDSFPLGKAPGADGIPIELYKRHSKTLSPMLQKVYAEALRVGTLPPSMYEAAIALLAKPGKDPQLSESYRPISLLTADVKILAKTLAKRLAQVIKYLVGEDQTGFIPEKTTALNLRRLFLNMSITHTNSNTRAVAALDIAKAFDTVEWPFLWEVLNANGIGPNFIAYVKLLYNKPTAALRVNSDLTKPFDLSRGTRQGCPLSPLLFALAIEPFAQAVRQHPQLVGLEVANRLEKIQLYADDTLVYLGDRGPSLDTLISLTTQFARVSGLCVSPSKSVLFLLDPPRQGENLEKCPLQVVQEFTYLGIRIANPLSMYYDLNIRPLLTWVQTKAEAWATLPLGPMGRIQLTKMIITPKIQYALWHSPIWVTKKFFNALDKILKQFIWGKSRSRLAVETLQLPQGSGGLAFPNMSLYFLSAQLSHCRQMVEHTAEKSIYHLWSAVTPTQPTPFRGLLAKGPTVKGTKNNSLLALHQKVWQTAHQMMNNRVMHPQTPIFSNLEFPSLRASQPHPVWLEQDVCTVGNVWGRKGMIQFRTLQLEYGLPXSQWLMYNGIATALRKRNSTQRIKIGISDIAMAITEGKCKGLISNLYKKLXKQKVQANTIKALTKWEKDIPTLTDSQWQQALKTPAQVSLNYKYRLLQLYIIHRAYLTKSRLHRMDANISPICNRCGQEEGTLMHTLWSCTKLNAYWAEVLDTLSQLLQYPIPRSPEICLLGVTASLKLPIADLQFLQKVLFIARKGITRLWKCSDPPKYYQWYSAVGDLCKVEKAAYTKNGTYNKYLAIWNKWKNAHNSMP
>L1-34_XT_pol#LINE/L1 394-4170  [Xenopus tropicalis]
MAEIKIGSMNARGLNTPLKRYNLLKEMRRLKLQVMLVQETHFKKTKVPTLRFKGFSTVYISTPYISKSRGTMILLADTLGFTLIESKTDTAGRFNIIKGLINNTKYTIASVYLPPTEQHSALSATLQALSEIEEGTLIVGGDLNVALEPILDTSTGHSSMPYKKIESLKKMLRTHTLIDTWRLTNPTSRNYSFYSPVHNVYSRIDYIFIRHTDIALLKEADIDVISWSDHAPITCTLINKTPSLKRSTWRLNDSLLRDQQIKQDIIHKVKQYFTENNTDNINPWTLWLAHKCVIRGELIKIGSRLKAERNAKVQQLLTKIRTLETQHKLSKLAHVLESLTEARKELRDTYSSYLARAIEINKKLFFEHGNKCGRLRNHITQLKTPTGQMVTTTKDIAETFRQYYIKLYQLPTNTQRPHDRHHACRDYIHKTNIPKLSTEQQALLDTPITKEEILLAIKSSKSGKAPGPDGFTIAYYKELGEHLTIHLTSAINSISNGNEIPQEALEAHISLIPKKGKDPSDPGSFRPISLLNVDTKLYTKVLATRMNQILPELIFPEQVGFVPGREARDNTNRLFSIIQHSKKSNTPIMLLSTDAEKAFDRVDWTFLKATLQEINLGPQMIKRISALYTLPTAKLRVNGELSETFHIKNGTRQGCPLSPLLFVLSIESFLRKIRDNPNISGVKIGTREHKTAAYADDLLFFIRNPRITLPNLLLELQEFQKISHFKVNLTKSVALNISLPQIDFNDIMQNFPIKPSHSHLTYLGIKIFSELKQTIDRNYTDLINAFKVDLHTWAKPTISWVGRINVLKMNILPRFLYLSQTIPYPPPQKTFQNLNNLTNKFVWANKNPRIARIKLSATKNSGGLGLPNWEAYHKSAILNRCLDWSFHRHTKLWIRIEQESLVTPLWASLWLPNTKREYKDKSDSKLKYTLNIWDTLTNTGKWQNTPTPLTPVFGNPDFPPGLDLDNFKGWKLQLHSGANYFYTGQQIKSIEELIPNRTITDLDRFRYRQIRHFLYSLAPTQSPRPDLTEIEQIWNQQKTPTKTISLLYKCLLNLTPNPSDSFKNKWETDLNINIDQEQWDKITQINHSTSPCTKIQELNYKIYTKWYRYPSKLAKIYPTVPPTCWRCKNGIGTLTHIFWSCPLLKPYWDTIRDTIKLITDTDIPNTPLTLLLHDTPLPYSAYKNSLVPIMLDAAKLLIPIKWRQTEPPKIKDWLYKLSEIYRFEEMKSTSEKESRKFTQKWFYWNQFKHSEQYLELAAA
>L1-35_XT#LINE/L1 1661-5404  [Xenopus tropicalis]
MSMQNVILMSWNVRGLGSSIKRGLVNKYIRRHNPHIVLLQETHLDGSKLTTLKKPWVAAAYHAPYSSYSRGVSILIAKTCTYSLHKVISDPGGRFLIIHICIMGKPLTIANIYIPPPFSDEILYSIMDKIAKMPFAPIIIMGDFNNVMNGAIDRLPIPNRVDQTLSRWLDTFHLTDLWRARNIGSKQFTCFNAAHNTLSRIDLALGSPDIAQVTNDIQIMARGISDHSPIILKVQLNPEPQDRTWRLSQYWINHPDIETPMANSIVEFLLLNEGTATKPIVWDTLKAYVRGEYITHIAYLKKQQTMQIDKLQQQALDKEAQYVANPGPDTMSEWQNSQAELLLAQTQKVKKDILYHKTNILESGDKCGKLLAYLSRDPAQNTAIPNITTSTGNYTSHPKSINETFREYYLTLYKSKLTVEPDDIAAYLARINLPTLDAQGRHLLEAPVTAQEVSDAIQTFPIGKTPGIDGLPIEWYRKYQKELTPSLVSLFNDVREGAPLPDSMRRAMIIVLPKPGKDPRECASYRPISLMNCDAKILAKILARRLNQVITQLIEIDQSGFIPTRTTDINIRRLFTNLSVTHDNAGSRVIATLDNEKAFDSVEWAYLWATLQSMGFKENFMKWIQALYRDPEATIRTNQNISLPFALQRGTRQGCPLSPLLFAIAMEPLATLIRQSPRIGGLKLGGVTEKISLFADDTLLYLANPEIELNTALDIINKHTNYSGLKINWSKSAVFPIDPQPLPPPQLPGGLQWTGEFKYLGIKIQRNIHKFVELNLLPLLQTVEQKVKSWTRLPLSLIGRINLFKMVILPKFTYIFRQSPTKIPNSFFTKIRALLIQLYWHPSTPKISIAKLQLPTQAGGLAAPNLFLYYIAAKLTTANWWASPTLDNPATRLEAQTVGSYEELKNLLYRGCSYTPKATPLMKEIVWAWNTALSLFPKPQNHCSELTPLWCNPKLQHLQTIPDPQLWASFQIKYIQDIVKEGKLLDFQTLKNNFNLPNRMLFRYLQLRHAVHSQFQGTTLQTTPSRIEEQAHNCPHTKALSRSYALLALANDTLLNKLYNKWLIDIPDMNKEQWKETLDSIFDYIVASRDRLIQYKFLHRAYITPKVLAKISPSQVDECPRCHQSPADFIHMVWTCNKIASFWTEVADYISDLTSTPITVTPSGMLLNQITDLAPTTAERALISILLAYARKSITMKWKAHSAPSIQFWVSQVNQAMPTYRLLYVRRGCPNKFEKIWSSWLDKHNIEN
>L1-35_XT_gag#LINE/L1 164-1270  [Xenopus tropicalis]
MGKNRAQPTNKRREGEIQDGARSHTEAPNGSPGKRAGDTAGLQISAQAAKRLERYARDPSLHNAEPQPDSPPATTTQGGTQTEQGDLSKAPSPASTVHRHSSEAHQGDIDPHLPPAQQALMDQSTLAEIVSLLNTNHAMTIGKIDELKSDFTILRHDIQNIRERAQEVERRVSDIEDTVNPMPEQIQSMSQRLANMEAKADDLENRLRRNNIRLVGLPERAEGGRPEIFLEQWLRDTFGPTVFSSAFAIERAHRVPGRPAPPGAPPRPLIARLLNFRDRDRILREARTKGDLMYENTRVSIYPDFSVEIRKQRMKFTDTKKRLRQLQLPYSMLFPAKLRVVDNGQTLFFTSPQEANTWLEHRPARSPRR
>L1-36_XT_gag#LINE/L1 422-1078  [Xenopus tropicalis]
MDEFAEAHNSLADTQGKLEKEVERLANKVADLEDRSRCNNIKMRGIPESVHTQELETYLTELLTTIMPNMPPIEQTIDRIHRVPKPRNAPEAAPRDVLTKLHFFRTKEKLLQAARLKENWPPKYVDLQIYPDLSQATLSKRRSFQEVTKVLRDNKIPYRWGFPIKLIITKQGIPMAFTSPEEVKKALHRWNLPQAPGSPANPTPQKSPRKLTKDWATAK
>L1-36_XT_pol#LINE/L1 1584-5486  [Xenopus tropicalis]
MVKFYSLNVRGLNTPQKRNLALNEASKVKADILFYQETHFKKPNPPSFQNRKYPIAYHALSCTKSKGVSILVGTAIAFQLHQQFADPSGRYLMLICSINNQVYTLINVYTPNENQIQFLTKTLTHLMQHRQGKCIVAGDFNNTLNPILDISRLNMKQNNRDQVPARKFRELLHKFALTDVWRAKYPTEKEYTYYSPRHATYSRIDLILADPQTTTQTTKAWIGIQSWSDHAPIGIDIQPLPTQHIISRWRLNDSLIAHQDTQTYIKQEIESYFQTNTTEETNIQLTWLAHKATLRGTIIARASQLRKQRDQKVNELQTKIKLAQNEQHKHPSKTQEQLIQIQKTELQQILLAKTEYRLKMLKQNYYTKGNKADKLLAAQLRIKQAQTRIQYLTKQNHKITDPLQIANQFAQYYNSLYNLKDSKTEPQPTTKLIHQYLSTLNFPQPSPTQRESLSAPITIEEITQAIKQLKLGKSPGPDGFTNIYYKTYQATLLPHLQKLFQNIMDTGQIHQEFLQAHISTIPKPGKPQDQCQNYRPIALLNTDLKIYSKILALRLNTVLPSLINYDQVGFVPGRQAPDNTRKLHSLLHIIKXQKIPALILSLDAEKAFDRIHWDYMNHTLQKFGLGTNFIKAISPLYSKPSAKVCTGGVLSNAFQLTNGTRQGCPLSPLIFALMVEPLAINIRQNPNITGIPTRSGHHTIGLFADDIILSITNPQITLPNIMAELNNFYQISWYKINSSKTQALPINIPASEITRYKQIYPFDWRETYLTYLGIKLTKDPELLYKHNYIPLQKQLQAEYTRWKPLHISWLGRIITIKMNILPKILYLFRTIQIALPPRYIKLLQSQISDFVWAGKRPRTAANILQQPTVNGGLGLPNXQNYYKASLLDTAIKMHSPQHYRKWVDLETEELRNTTIPQLIWLPPRKRPHCPNLLPTTKIILDVWDRLSQANTFVHYPSLRMPITNLTYLIPDLHLQTWTNQGLQTISDLYEIRRPRTFEEIQQKFHLPGKEKYTYLRIKHFLTKHLANYKTKPQPTFMEHLCKDGWNRRGTLSQCYQNLNLDPPDLKHPYMNKWDNDLQITTTAEQWREATAALSGATSCTNHWESYKKTIYRWHLTPEKCHKFTKNSSPMCWRGCNQIGTLLHMWWECPPVHQIWTQVYQLINSGLQINLPCEAQVALLLHLPDNIARNNKKLLFHILNATTTMIAKHWKSGGPYNLQEIIQAIDNRNTMEQMAARNANKMAVYEQVWTTWTTYREKNTSPSAQSRPNNQQQLLNTRDNNTTPDPGDTNPTPQQDNELSDQ
>L1-37_XT_pol#LINE/L1 1356-4931  [Xenopus tropicalis]
MTEIKLLSWNVRGLGDPIKRGLVFKTIRCSKPHLILLQETHIDKSKLRTLHKPWLGAHYQSTYSSYARGVAILVSRNCPFTLIKIITDPEGRYIIIHCTLQGKQYIITNVYIPPPFSATLLSQIMDKILTLPLTPLLFMGDFNAVMSEPDDRLYPSNRPSSALSKWATTFNLQDLWRIKHPGERKFTCFSHSHNTMSRIDLALGSQELVTQTIQAEILPGGISDHSPLMVTIEVDPRIPDKLWRLNSFWLQQKKINETIDGELKIYTEINTNSSTPQTVWDTLKAYTRGLYIQQIKTFNRNTQQEITNLENAVTTAEEEFSQFPSPQTKRDLLAAQNALQTIQTKQVKKSQLNLKANIFSTGDKNSKLLALLSREISPLTNIPAIKDENHQTISNPTEINKVFKSYYENLYTSRMTQTENEILAYLRTIPLPSLDIQDKLQLDRHITEIELTEAVSSLSKGKTPGPDGLPTDVYLKHVEILAPLLTSLFNNVLEGANLPASMSETLITLLLKPGKDPLNCASYRPISLINVDAKILAKILARRLNQIITKLISPDQTGFIPGRTTDINIRRLYTNLTISHDNSGHRVLAALDNEKAFDSVEWTYLWATMETMGIGKNFQKWVSALYNNPHARIKTNQTISSPFSLSRGTRQGCPLSPLLFAIAMEPLAAILKNTPSVKGLQIGKITETIAMYADDTILFLENPYEALDSALRIINKHTIYSGLKINWNKSIIFPIDTFPLDTLKYKAPLQWTTTFKYLGVYIHRDIEKYVELNLNPLLTLVENKSKAWRNLPLTLLGRINLFKMILLPKFTYLFRQAPVTIPHSFFHKLKTLLSTMYWASSPPRTALTTLQYPSDSGGLAAPNMFLYYIATKLVNAWWWGSPSLDNAATILEAQLVNSLETLKNLLYRGISNNETLSPLMKATVKIWKTALVYFPRKENWRSKNTPLWHNPHLPHLLTIPEPNIWAKYQIKYLGEIMEQGEIPTFDTLKGKFNLPNKMYFRFLQLRHALQAQFGKNKIDTTPRRIEEMVLEPNLLKPVSQFYSLLNKPEKPILPKLYEKWKRDIPHLTPEMWIETLETYNTTLISSKDKMIQFRFLHRTYLTPHRLHLINPEIPDICPKCSQSPADYIHMMWACPTIKRFWTKITEETSRLLALINSSVPLYHLTYLSRGCPQKFHKVWTPWITEHLPALLP
>L1-37_XT_pol#LINE/L1 74-999 via tfasty with L1-1_XT_gag, 1 frameshift. [Xenopus tropicalis]
HKVSSNAAQTLSKYARQTHEPPHTQRNTDIPEIQPALTELPSPPPPTPMQPSLGEIANLLHTNHATVLNRLDELKLDFNIVKLDVQNLRERTHETERRISDLEDRTQPLQNIIDNHTNKIAALQAKTDDLENRLRRNNVRIVGIPERAEGRQVELFVENWLVQTFGKETFSQCFIIERAHRIPSRPPPPGAPSRPIIARILNYKDRDKILQEARIKGPIQFENHNVSIFPDFSMEVRNQRLKFTTVKEKLRKLQLPYSMTFPARLRVIKDDKAHFFTSPEETIKWLETLVGHPPPPRSPRHLPTGQRAP
>L1-38_XT_gag#LINE/L1 136-1140  [Xenopus tropicalis]
MTRGSKAKKAQPQGKIPGTPHRRPTSSHNDNMADGANSSPTASPQSEQESPPADSDPETQLQYSGDSILISKFKRLLQTELNTVAAKITDHVTQEIRDLGQRTAAIEDKVDDLISKTAEHDIQLAQLKRQLTDMQDNLEDQENRSRRNNIRIRGLPDVIQNLQEEIPQLLKSIVPDITDSQLLMDRVHRALGPRREGAPPKDIIARLHYYSTKEAIMSASRAASHLEYKGHQYSIYADLAALTIQKRKLMKPVLTILTSHRIRYRWGYPFKLTFMFQNRPYSATTAQEGLELLTRLKLQQPTPTTPNTTPRKSSSERSISPLWRKSPMAQRSLNH
>L1-38_XT_pol#LINE/L1 1400-5171 via tfasty with L1-12_DR_pol, 1 frameshift. [Xenopus tropicalis]
MSLKCISHNAKGLNSPTKRSLAFRHYNKLGADVLFLQETHFSITSIPKYFHHSYSTFYTACAEKKHRGVAIGIHKKLNFQTTTIKSDPEGRFLILVGQIQDTPITLATVYGPNEGQQTYYRDFFSILEEKCRGPLILAGDFNEVPHPNIDRQPNPVSKRNRKNKHYFAKLMDKYLLVDAWREQHPFKKDFTFFSAPHNSHSRIDMFLIHKLISPKISQTKILSCPWSDHSIITLTLASLAQKPSNITWRLDDSLLSNPQHQQTIESELESYFSRNNTPDIASPTLWAAHKAYIRGILIQIKAKTNKERTKTINQLNNKMQRLEDQLKTNPNNTKSKKELEKTKTELNLLLTEKEITKLQWTKQKFYRKANKADTMMARQLSNKFNRSPFTQIKLKDGSLTANPERITQEFATYYHTLYQKHKDPSPTLLQQFLNQANLPLLTPQQKTLMSEPISIEEIKVAIKQLKVNKSPGPDGFTGKYYKLFAPKLIPWLHLLFNDIMTNKGNFSRDDLQAQIAVIPKPEKDHTNCKNFRPISILNLDIKILAKIIASRLNQFLGQLIHKDQSGFIPKRQVTDNIRKIINLIHIAKIKDVPSMLLSLDLEKAFDSVSWHYLYQVLSAYNFPIPFLSVVKALYNSPTAKVSHMGFQSDAFKIGRGTRQGCPLSPLLFALALEPLAQQLRLNKKISGITTGDSEYKCTMYADDIIMTMSNPMTSLPYLYDTLSNFAKISGLKINPSKSEALSINLQPHLKKLLEINFEFKWQTKTIRYLGVLISADYRSLAKENYPKIEQKILNMVKSWERLKLSWLGRVTALKMSALPLLLYLFRTLPTSPPKDYIEKMQKTFTKFVWNGKRPRINRATACRNRHKGGLGIPNLKGYYIAAQLSQLIPWHLPEDKPIWVKIEQDSLPNISLRNILWTTHSTLQTQTNPIITHLVRLWDRSKEPYKLCSPHKPVASLINNPDFDPGQSSGALHWWKQSNLDTIHSLTSSNILLPWSRLQDNYKIPQHEWLHYHQVVSYIRSHHKGKQFPLPTAFERLCLQLTTLKGALSYLYDTATHLTPIKELKFVQTWESTLRLCFDEDTWRDIFKNTVTCSINVLTQETSQKVLHQWYLVPTKVSKWYPSASPSCFRACNQQGTFMHTWWDCPVAVRYWIRIYTLITAVTGLSLRKSPAEALLNKNIPSGNKYLRKLITHIFSAAKQTIAKAWKSATLDINSVKTRLDNMLIMERLTSISTGQLKVHNKIWAPWMTYRNISLHP
>L1-39_XT_gag#LINE/L1 92-1183  [Xenopus tropicalis]
MGKHSKNRDPQREEPKGNRLTESQKFLKKFLTPAEQDSDAHEGSSETGKPDGTDADSECESINTDQGTLSYLKTLPTKQDFLDLATQIKTTLKEEVGDLKAEITALHSKTADIEHRAESVENTLESLLTVTESQSRAIQLLTRRVEDLDNRGRRCNLRVRGLPESIDQPILKQTVQAIFNDILGQQPANDLQIERIHRALRPRGLPTEKPRDIICCLLSYTKKEEILTKARQRKVVKHGNTEIAILQDLSWFTLQQRKLLKPLTDMLKERQILFRWGYPFSIQATIEGKTHTLTTPEDIHPFLQACKAENLDLTEWVKFVQLPKPTSLQYKEPWMEVTTPKSKRRKMKLTPEKLPPQDKTKDTG
>L1-39_XT_pol#LINE/L1 1516-5352  [Xenopus tropicalis]
MVNVIDVNKYTYHNLVMDNTVKVISLNVNGLNIPEKRRQIVNVMRKGKGDIILLQETHFKNTPQPMHKLGTFSQWYYSNNPDQKTKGVAIAIRKNLNFQLENTLSDPNGRYLFIKGQLYHTPCTIGCVYFPNKNQIPFLNKLKEKITDFANGLCIIGGDLNFPVDPQNDTSKGSSVLPLSKLKIASKSLQSLRLIDTWRFHNPTTKQYTHYSSTQNSYARIDYVFISQHHLHWLKEASIDNILWSDHAAVQIKLNIPNKTPSTWQWRLNESLLEDLDCRKEIIDTIKDYKQNTQTDGTSHLTKWQALKCVLRGILIKHGTRIKKDRQKKTTQLIREIGKLEIQHQQNLSLDTYRLLTEKRRELKQLSNSATKYAMTRLRQKYYEYGNKTGKLLARALRQKQQDSYIHKVKNEEGIMQLLPNRIAEAFRHYYKNLYNIPQHPNQIKLEHKIQTYLNENALPRIEKHILQELESPIQLHEVIEVIKNLKLQKAPGPDGYSGKFYKNLLEYLAPMLTNCFNEIGPEKPLNEEFLLAYISVIPKPGKDLTNCSSYRPISLLNLDLKIYTKILATRLNPILPEWIHRDQTGFVRGREGKENTMKIINMMCWAKEHRTHSLLLSTDAEKAFDRVHWTFLKKVLENSGMGTRFINKIMALYTIPRAQIKINGILSEPFTIRNGTRQGCPLSPLLYVLCMEHLLIALRQNPDITGLTIKGEPLKIAAFADDLLLFLTKPLISLPIAMKELKNYGDLSNYKINMTKSEALPVVLPGKLLTQLKNNFKFHWQTEKIQYLGVHIPTDLHKIYEHNHKPLLSNLSTQLQSWNHNHFTWTGRINIIKMSILPKLLYLFQTLPITLPKSFFHQTEHMVSQFIWTKKKARLKKTILYKPKEKGGLGLPDFFSYYQASIVSKLVEHTYTANDKQWIKIENQWAGHPLANVVWNKEKKKELHIGQNSQIQALTETWKNLNKEYNLIPFPSPLIPLGDNLDFPPGIMDKGMNNAFGIQNLQLQHVLATATEPPAIMINKDTWTKKDSWRYLQIKNFLKELHNLQQPLRPLTDLERLCNRNTSPKHLISTVYKIIIQSKYANLPHFTRTWAQELQIDLVEEEWERIFRTVAKCSISNKFQENSYKILSYWYRTPTQLYKMRLIQNDKCWRCNGESGTISHIWYTCPKVKTFWEQIEQISSEILGCQIRFSPQMILLLHTDKAEKIFKKSLLMQLILAAKILIPRKWRNDDPPTVEEWLSSVNEIYLMEEITSSLSPRPQKFIEIWQPWVSYLNTHDKL
>L1-40_XT_gag#LINE/L1 125-1240  [Xenopus tropicalis]
MAGTSPKQKKRPKNSAASESAGEKGTHQISKMADGISQNHAVSEGCSDLKAHTMNYKQMALEVANLINPTIEKSIEIAVKNLQSEINKIVEQVTSHNASISEMEERISSLEDYSSSAKSKIQFLEKKISDLENKTEDLENRSRRNNLRFVGIPEHYKQDSLIKLISQWLPKSLGLQNDITSLKIERAHRVGPGKDLPHQKPRTVLVKFLDYSDKTLILQTYKKSKNLYLEKDKILMFQDFSTTLSKKRQNFTNVCQMLFHHEVKFALLYPAILKMFLDSGVHSFEDYKEAERFVHDFTSHLGKSSSHVTKSFNSKGQFTAEQRDTSGAHSSHIARKVSPFIKRDRKIHNSQPRSRSPIDKNTSSLDQSLMES
>L1-40_XT_pol#LINE/L1 1614-5489  [Xenopus tropicalis]
MLCILHFLSMDNIKIISWNVNGINSPIKHKRIIQELKKLDTDIALLQETHLNEDENQKLCSSWVADNIYSPAINKKGGVSILFSKKLNFQLINTSRDNSGRFIHAEILLQNQSWNFCSIYAPNNNKPEFYRDLIHRINSLNSFNVIVGGDFNESHLWSLDKCGTSTNPSHSKSKLFSDLLDHTNLKDVWRILNPSSKEFTFYSHSHGMGTRIDYILTSTNLLSHVSDATIGNFTYSDHTPISITFTANFISKSYIPWKFPVFLASRSDFQQMLKDKWKIFLSDNAIHSNNPTLFWDTWKAFIRGEITSFRSQFTKKINSKILDLSNKQKEAYIAFKSTPSQVNREEFENSIKELKSWLSIKDSINQSYVKSKYFNLGNKANKLLANMTKNWSKSHKICAIKSIDDKITHNPLEIAETFRKYYETLYSSTNSNSKLRRSFFNNITFPKISQSDLENLNSPITEEEVRFTISSLKKYKAGGPDGLSGPFYKCLINEISPFLTELYNFIINQKQSLPSSLNSYTSVLLKQGRDPTITSSYRPIALINQDVKILSKIIANRLSIILPKLISPEQCGFVKGRSGTKNLRTLIKVIYSAKTNKIPISLVGIDAEKAFDNICWDHLLDTLEAFGFHGPFIDLIHLLYSVPTTQILAAGEISKLIYLKRGTRQGCPLSPLLFDLSLEPLIRTLKVADSLPGLSINKIRVQLTFFADDLLLIVKDPNKNLTNIFSIIQRYKVISGFKINLNKSELMDVYGQTSPSILKQLGIGKSLSSIKYLGIYLPTDLQRLYSLNYVPMIKNIISLSQKWKNLPLNLKGKIAFYKMMIFPKCIYTIINLPLLIKHTDINKLKSALLEFLWKGKTPKIALNKLNYPKSFGGLDLSDFRTFNLSALTRYIVEWFSEKGKFTNLPLELLTYSHDNILEQIHKPLKFQPAETKENPLFRDTFAVWKLMHKSYKSSYISTPYFPLVKISTLPNSFHPPMSTTWKQKGIQYIKDIISPSSDKIMDWSEFSSKYQISEKEKLHYFQISHWSHHHNHLDSLSVYNPLLTTALDNLMASQSRNNIRSIQTSIWSNPILKAHPLDSTAKKWSTYLHTEISPETLTNCIKRFDKLIHTEVWREQNYRLIHLAYKGFNFDSKKTNFLNKCPKCNTPLPNIIHLLWDCPHINSFWKVIESHLKSTLDFKYNLTPKSALLNFSEDSMQVSHLLQPKFGNISYSINYLNLILAAAKRIIFKKWIDPNPPLIVEVISELQVLCTNEAIAFKFSNTKNRTRFLTKWRFLMNTLSPKDRSHLDSLLY
>L1-41_XT_pol#LINE/L1 716-4531  [Xenopus tropicalis]
MWQPTKPKVGTFKISSINANGLNSPQKRILLSSDLQKHKANVAFIQETHFKEGSTPRWNNRHFPDIYTSKPQPTKVRGVAIVLSQNFGFTLADQGRYIFIKGTYMNRMYTFANIYLPNTEQATELTSIIDTLQTFAEGTLVAGGDFNIPLDPKLDCSTGHSSIPHKQIARCKQLLHSIQLIDPWRIFYPRERDYSFYSHRYNQYSRIDYIFISHHFLHEVIKSEILTRTWSDHSMTTLTLQTPLPNTKHNTWRLNEALLRDGDIREDLANQITNYFKENSNPDTTPLTCWEAHKCVIRGHLIKHGARRKKEKEKTRSDLIKQIQQLERTHKDTHSDQILLQLTEARKNLANNLNYFTQKAITVFRHKLYEHGDKCGRLLARVLKQKQNQNYIPSIKLKNGNTAYITEQILNTFETFYSDLYQLPDESTNTQSDFKKRLSEFLTSSHMKRIQTIDTDILDSNITTEELETALKTTPTGKAPGPDGYTTLYYKTFKDKLLPHMLKAFQDIQTGSRFSKQSLEAHISLILKPGKNPQEPGSYRPISLINGDVKLLAKILSNRIKNILHKIIDPEQVGFTPGREGRDNTNRLINILYMAKKQNSKLMLLSTDAEKAFDRVNWTYMFTCLQHIGLGPKIIQWIQALYNNPHARIRVNGALSNHINIQNGTRQGCPLSPSLFIIALEPFLCHVRLNPDIRGITIANRHHKIAAYADDLLFFITQPIISIPTLNQLLINFGYLSNFKINFTKSMALNISLTPQTIQALSQKFPYKWASHTITYLGIKISKDYETWTLNNLKNLLSSIKKDLDNWLNKPLSWFGRMNVIKMNIIPRILYIFQTLPLHIPESIFDSIQATITRFIWQGKKPRLRYKTLTKDRTQGGATLPDCRLYYLASVLGRIIDWSHHADTKLWIAIEQQATYSYLIHLPWLDKRYRRIRYTDHPLLTNTLAIWDRCRLKYKLTQFPSPLLPLINNPAFPTGQQPNYFTHWLIEDNLQLLHFMDKGEFIDKRKFQAIKPFSNMDHLKYAQIKHYYQSLGGTSTLGRPLSPFETLNAMSLPPTHTISQLYKNLRQSHAFTKPGFLESWSRDTGIQFQEEQLSNLMNKLLKSSRCSRIQETNYKIVTRWYYTPSKLKLIYKHTSDTCWRCNKEKGSLLHIFWTCPLIQPFWENVRKAIHHITNIEIPNAPEYVLLFHIDKPLSSFRNSLEPHLLNAAKILIPQRWKQTATPTLQDWYRKIEEIHRFEERSLSSPENYDTYSTIWFRWLSFKESDFYKQSIS
>L1-42_XT_gag#LINE/L1 142-1281  [Xenopus tropicalis]
MGKRRPKEQLGTMSPYLHKSQAQQQRAQDGADESDQEAPPDSSPASSPGHTDSALTHLQQQPGETISHSINTADLVTVQVLSQQLADLHEKLTSSITDTIHLALKDIQADISNLGERTDQLETNMDELIVRYNQVEQENSSLWEELAALKSHTEDLENRSRRQNLRIRGVPEEITPQDIRTYLRSLFSNINPDLPVEAWRFDRAHRALGARPANINSPRDIIVCFHYFESKESIISKTRNIQHVDHQGHRVQIFHDISPITLNKRRELRPVTQKLREHNISYRWGFPFKLIATKGNRQYILQDPSQGPKLLQDLGLAPLDPKLLPLNRKRQPPDHLTPIWEKVKPGHPNQIPHHKPPDHIPSSTKAYYIIPLLMEEPREL
>L1-42_XT_pol#LINE/L1 1704-5528  [Xenopus tropicalis]
MVKILTLNVNGLNSVMKRYMLIRELHKIRPDIAMIQESHFKTSENHTLKTKLYPTIYQATANSKKAGLITLIHKDCPFEVKTVQTDPRGRYLILDGTLEGKTLRLTNLYSPNKGQLRFIKSTLTRAKGDHQNPTIIGGDYNLVLSENRDRSHPSQLQQYKIQCQRFRQLIRRLDLRDIWRIHHPNERAYTFYSACHQLYTRLDFFLVSRDLLSYTATSDLIPISWSDHHAVIIDIQLSVPARRFPHWRLNEALLSDPHTCADLTQAIQDYFINNIHSVDNPTILWEAHKAVLRGKLIAIASAKKKEKSHTKVTLERKLKLLEHKAHIHPSIKIRNEILGVRRELNLLTSGDIEKALKWTRQKFYERGDKPHSLLARKLREQIAHAAIVSVNKANGERTFSPKEIAKAFQDYYTELYNLPNPQIPTQPAGKNPNQTFLIENVHTTLSQTEAESLNKTITEEEVKETIRSFPTSKAPGPDGFSYAYYKKFSSLLIPHLTKLFNSFLAGKPIPHTMLASYITLLHKEGKDPNLCSSYRPIALLNSDLKIFTKLLANRLGPLMPKLIDSDQVGFIYGRQAGDNTRRAIDLIDIANKTQTPTLLLSLDAEKAFDRLDWNYMFELLAHLGIGGPFLKAITNLYSEPTATLKLPEASSGQIHIRNGTRQGCPLSPLLYALSIEPLAAAIRNHRDITGLKIKDREYVISLFADDVLLTLTNPVISLSNLHALLRQYSKLSGYKLNVDKSEALPLNIPSQVKEALMSKFHYKWKTHSLKYLGIQLTKTYSQLYNTNFPPLLKHIKASLHKWSTYTISWLGRITAIKMTILPKLLYLFETLPVAVPKTTLKDLQASVFKFIWGKRRHRIARTVMMAPKTQGGLAVPYIKAYYEASHLRQILGWTTYNPTSKWAQIESLWISPVHPNSLLWEIKEKGQSLILSPMQFTLAIWKQCKAKYRLANPHSRLTPLLANPSFTPGMSERFKQQWGTKGLFRIHDFINPLTHKQWTFAEIQDKFHILPTRHFEFAQISHFIQTTLPKDQNPPYITPFEKLCIKGLPQRALISTIYSILNALPEDPFPKHSYMLKWEEITSTTLSIEDWGEIWDNARRNVTCVRQKESIYKSMYFWYDTPVKLNHMFPGTSPFCWRGCGQKGTLQHILWSCSKIVPLWKTIEELLSCIFLRKVNLDIYITLVGKPIPSLTYAEQRLTNYILTASRLAITSQWKNPNPPKLNDVLRKVKDMREMEYMTANVRGTQENWKKVWSKWDYYITNPLGRGDAHPSQQF
>L1-43_XT_gag#LINE/L1 1-1125  [Xenopus tropicalis]
MGKRKQREQKSTLSPYLHKSGSMGSRDEIQDGASQTSASSASPQIGLATSPQREDITMADARLSPGQCTSQTTETSSSTDEAPVTSRILQEQLAQLQAQLNSTIAQSIATAITAAIRDIQRDITDLGERTDKLETYTDDMAQRLINLEQENTDLREEMTQLKDSCEDLENRSRRQNLRFRGIPEEVTTPEIPKYLVELFTHICPDTPQEQWKMDRAHRSLATKPPPTKPPRDIIVRFHYYESKEALLTKTRTINSLEFHNHKIQIYSDLSPVTLAKRRELRPVTQILRDCKIPYRWGFPFKLIINHRGQTHTLIHPRNGHKLLAALGIKTRDTRKTIETSSTTTTLSPQWTRVPGSPRPPGLALSPSPLRGDESP
>L1-43_XT_pol#LINE/L1 1642-5436  [Xenopus tropicalis]
MAKIISINAKGLNTITKRYLALKEIQNLKADIAFIQETHFQKERPYKLQSKYYTRAFYASAPTKTAGVAILIHKDCPLTVDQTHCDPNGRYILLVGKYMDTPLVLCNIYSPNKRQISFLRTIFNKCTTQTPAYQVVGGDFNLVYSQQKDRSNPSPDKSAHFLSKEFRKLINQNALYDTWRINHPKTANYTFYSPVYKTHSRIDYIFVSQPCLRLSFSTEIHPITWSDHSPTTLTLDLVKLPPKEPHWRLNETILHDPGTVQQLEKALKDYFTLNEGSVQSLATLWEAHKATIRGQIIAITTNRKRALQSEQNTLLSQLHTLESNYNKNRSEQHLTQIIAIRKQLSTLKHEHIEKAILWTKQKFYEQGDKQHTLLARKLKDQITQSRITTIKTAEGQLTYNQDQIGDTFHEYYTQLYNLQPAHTGTTTPLQNTESLTKFFKEAKLPKLTDEDNQTLNRAISIEELLSVLKQMPNGKSPGPDGFSYKYYKVFSQILGPYLVKLFNEFLQGTPIPTSILSSYLTLIPKEGKDPNLCSNYRPIALLNSDLKLFSKILANRLAPILPKLINGDQVGFIQGRQAGDNTRRTINLIEILHRTHTPAVLLSLDAEKAFDRLSWPYLFSLLSHLQFSGPFLLALKALYHTPTTQLKLPGQSHKRIKITNGTRQGCPLSPLLYALSIEPLAATIRNSTDVSGVTFKDTPLKISLFADDVLLTLTNPLISLPNLHKILNTYSSLSHYKINVNKTQALPLHIPKRQLQYLQESFHYNWQKESISYLGTHITANYTDLYRHNFAPLIQRVKSLLQKWSKFSMSWFGRISAVKMTILPKFLYLFETLPIPVPPKILKHVQAVCHNFIWGHHRHRIHRNTLTTPCRLGGLGVPSFSRYYEAAHLRQLLAWTHGSLNSIWAHTENAALQTGHLNHLIWTHPHCTTEKGTLLSSTRHTLSIWYRLRQKWGLISTKPLNTLFLNNPDFQPGMHPHFIRKWIDSGIQMVADLLNPFTKEMKPFEELKLKTNQNTLTFYEYLQLRHFTKPYSDRAKLTLPTPFELIAKKGLPQKGLISRIYQILSEPKANPTIRHPYMNKWDSNLPQPMTEEDWTLIWGNAKKMITCSRQKEHIYKILMFWYHTPDKLHTLFPDHSPLCWRNCGERGTLPHIFWSCPLISPLWIEISDLLRKVLRAPIPPDITTFLLGKPLPKTSKSNQALINHILTATRISIAAKWKTTSPPTLAEIKKRVESNKAFEAGIARLTNKTPKFLKIWTPWELFANE
>L1-44_XT_gag#LINE/L1 152-1150  [Xenopus tropicalis]
MAHKRRKREKKGPNSTPSRTTRSVAAYLTRPQASESPPMASQADSWLETDSQPLLSTSEPQAPVEESALLEKFKTMLQQELASTAAAITADIAKQLQDLGQRTDAIEHKVDDITTVLDAHENDILDLQTQLREIWDKIEDADNRSRRNNLRIRGIPETVTDLPAAVESVLTSLLPNLPPERLECDRIHRALRPVREGDPPRDIILRLHYHQTQVATLQAARQKDRLEYQGTQFQIYTDLAPITLQKRKTLAPITKTLQQHKIRYRWMFPVKLAFLHNGHPYQISTVQAGMDLLFKLGLQTRSNESPSQPSKPRRVDPIWERTQGSQRRNIPTT
>L1-44_XT_pol#LINE/L1 2082-5885  [Xenopus tropicalis]
MGLKILSHNVQGFNSPTKRRKAFQYYNSLRIDILLLQETHFSATSYPKFLHKAYPIVLMANSPNKTKGVAICIKAGLQLQILETYRDPNGRYLAIKILMDDQTLTLVSYYAPNTNQLQFFETVTSHLSHWAEGQLIIGGDTNSILDRYWDRQTISLQNTNTPPHISPEGAKIKTLCTSEGWVDIWRELHPATRQYSHYSAAHKVYTRIDHIWVSQGLVEMPQSSRILNTPWSDHSPILYTITLLHLPNSRGRWRMNESILKIPELYTQIETSLKTYFRENINSVTSYATLWEAHKTVIRGLLIQCGAQRKKARNLEIFQTTTQLNDLMHQQIDNPMVDLRSSIDLTRTKLDLLLTHKMEKTWKWTQQKLYYHTNKPGRLLARKLRRRLDYTPINKIKNKNGFITTTLQSIIQEFYNFYKELYKAPPLPSNTKYDSFFRDIKLPTLTSTQHQTLNATITEEEVNIAIKSLKLPKTPGPDGFPALYYKKFSHILIPHLTAMFNQLQKGDKFPAQTLMASITPIPKPDTDLTECKNYRPISILNLDIKILAKVLANRLSVILPSLIQRDQVGFVRGRQAADAIRRLILLTAWANKTKTPSMLLKLDVKKAFDSLAWPYLKYTLRKWGIGINFTRWIQTLYDNPTAKIHIGPYTSPSFTIERGTRQGCPLSPLLFDLALEPLAIAIRNNPDICGCNQGDQQHKLNMFADDITLFITRPLLSLPNLYLILQKFGSISGLTINHTKTEALNINLPHELTKLLSLNFEFKWNKNYITVLGIQLTKTFEQLYQANYPKLYGKISKLLEDWGKYHISWIGRITAIKMVLLPKLLYLFRVLPIPLKRIDLRKLEANLSAFIWDKKPPRIRISTLQRSKMEGGLGLPNLWKYYIAAQLTHIPLLHTNNISPLWVHLENSMAAPFTAESLLWTQMKHRPSINSPTLRHSLTIWDTYAALYKLQSPHTPVFPIFKHPQFLPGQQICSFQWWSDQNLKRVGNLLTVRGPFTINYLKENYKLPNSEYFRASQILHLVSQCWKQNTSQSTKQTYFEKWCTDGITPLKAITIMYQHINSPKELLNLQYIKSWNKELNKALGEPDWKKLWENIRKSSNNTILLEAGYKVLFRWYLTPKKLAHIYPNISENCFRGCSIPGTMAHVWWTCPQAIRYWIRVYNMIFAVLNVNLQKDPYEALMGAPAQGVTNIQQKLINQIFLAARQVLAKSWKSPSINYNLLKPKIDWIFTNEKLTSIALDKYPLFLKIWQPWIDYRFGGTLSTSTLSA
>L1-45_XT_gag#LINE/L1 147-1208  [Xenopus tropicalis]
MGKRKNKEQAGTMSPFLQKTPAATQHEIQNGADGSDIEQQLGSQTSSPLHSGSDNGATGDLPPQGQAHQTTPTDMVTVQVLTQQLTQLHDRLTETITVSICTALKDIHADINALGERTDKLETTMDELILRHNILEDNNATLREELSALRAHTEDLENRSRRQNLRIRGISEEVSPQDIRAFLRSLFSTINPDLPAEAWRFDRAHRTLAPRLPGATRPRDVVVCLHYYESKESILNKTRNTSHIEHQGHKLQIFNDISPITLKKRRDMRPVTQALRTHNIPYRWGFPFKLTATKGNRQYVLQDPEDGSRFLKDMGIPDQPQEPQPGTSRQQDRLSPAWTKVGSPSFKNTQPANT
>L1-45_XT_pol#LINE/L1 1646-5446  [Xenopus tropicalis]
MVKLLTLNVNGLNSVFKRYLAIREIHRLKPDIALLQETHFRRSDDSTLKSNLYPKVFQASAEAKKAGVLIMIHKDCPYQVSKVTADQGGRYLILDGSLRDKPLTIMNIYAPNKGQQKFLRSKLTKGRGNCQTPIIIGGDFNLVFSDLKDRSLPPVNKEISEQSKKFRQMVRKLDLRDIWRIHHPNERTYTFFSARHNLYTRLDYFLISRDLLHFTATSSILPITWTDHDAVTFEIEITHQSKRKPHWRLNEALLNDLTANKKTLETITEYFAINKHSIDSMATLWEAHKAVLRGHFISTTSYKRKMRIKQITRLEHDLTYWEKLYHRSPSQQLKQQITQARRDLKKLLLADTEKALRWLKQKYYESGDKPHTLLAKKLREQLAQSAMLSIDAGNGQLVYAPEEIAEVFRHYYTALYNLHTQQRPDEQQRLTFLKDNIKVKLTQPELNTLNTPITEEEIATTIKSFPTMKAPGPDGFPYAYYKAFSATLTPYLSTLFNSFLEGSPIPPTMLASYITLLHKEGKDPNQCASYRPIALLNSDLKLFTKILANRLAPIMPRLINLDQVGFIHGRQAGDNTRRAIDIIDTLNKAQTPAVILSLDAEKAFDRLDWRFLFDLLQLMGFKGQFLTAIKALYSNPTATLKMPDASNLPIPILNGTRQGCPLSPLLYALSIEPLATAIREHKDITGPRVGNHEFLISLFADDVLLTVTNPMISLPNLHNLLAQYGKHSGYKLNIQKTEALAINMPSHTRELLKSNYKYKWKDISLKYLGVHLTKSYSQLYKCNYTPLLQTIHNLMNKWSPYTISWLGKIAALKMMILPKLLYLFETLPVRVPNTILRNIQTMFFKFIWGKSRHRVMMTGRSQGGLAVPNIIRYYEAAHLRQVLGWTTFTPTSKWALIESLTLTPTHPNSFLWQTQKSIKPPPDTLQAIRFTLQIWNRCCKKTHLRGPLGILRPVLANPQFPPGLSQTFQKHWGSKNLFRAYDFINPLTNKLYSFIELQRKHQIPQSWLFEYMQIIHFIQGPDTRLTPPTPLTLFERLSVRGLPQKALISNIYSILNTIMGDPFPKHKYMTNWEAELSTTLTLDQWEDIWENARKNVTCVRQKESVYKMILNWYHTPVKLNKIFPDTSKMCWRACGQEGTLLHIMWHCPKLAEFWKNIKNTAAKIFFWEIPIEATNALLGLPHPHIPHSEQKLLNYIYTAARLTITSKWKSLEPPSTREVISRLKTMKNLEEMTAKLRGTTPQHDKTWSKWDYFISQNQITQRYRPMQ
>L1-46_XT_gag#LINE/L1 9-1082  [Xenopus tropicalis]
MGKKRIRDSTCTISPFLQKPAASDKLRRIQDGGGEQEPDFSSATSSPSQPQTPERHSEASPHHSEGTDHTDSQTVTTDILIKQLADLRDSLSAAITESVKAAVQEIRADIFSLGQRVDHLETVSDNIIVRHNTLEDDLLTMKEEVTSLKAHCEDLENRNRRQNLRIRGIPENVQPKDLRQYLRTLFSTLCPELPAEAWRFDRAHRALGPRRPTQQTPRDVILCCHYFESKEQVLAHTRMLPHVDFQGTKLQIYNDISPITLAKRRELKQVTQHLRAHNISYRWGFPFKLIATSNGQQHTLMDPQQAKRFLLAIGLPPIPQTEPEIQKSPSRLTTEWERVGPNPPRSPRRPSPTPGPPT
>L1-46_XT_pol#LINE/L1 2112-5963  [Xenopus tropicalis]
MTKLLSLNVKGLNSPRKRTLAIKEIQKHGAHIAMLQETHFKASDNNRLRIRNYTQSYQACNDQKKAGVITLIRKDCPISITKQIADPRGHYLLLQGTYVSIPIILVNVYLPNVKQLHTLRKVLSKLAKTTAPITIIGGDFNMVHSDILDRDNPPNLKARLTHQAKQFRSMLRAHSLLDIWRIKHPKERRYTFYSSPHKISTRLDYFFVSPQCLKHPIESSIQAISWSDHAPITVSISLPPSIPKQSHWRLNETILHNIETKDKVLDSIKEYFTINKDSVTSKALLWEAHKATIRGQLIALSTAKQSARRTETHNLEAKLKNLETSYNTNPTPALLHEIQSARNLLKQSALKSAEKTMIWTKRRYYQSGNKAHTILAQQLKKSYNQSQILSIQTGTGDLTYDPRQIAQAFHRYYSTLYNLTDAPSRCEANLSSTLASFLQDCKLPKLTIEELEKLNRDITVEELLDVIKSLPSQKSPGPDGFPNSYYKIFKDYLSPILVDLFNDFLRGREAIPDTMLSSYITLLPKEGKDLTLCANYRPIALLNCDLKIFTKILANRLARILPRLIHLDQVGFIMGRQAGDNTRRTIDIFDTIQKLKLPTIALSLDAEKAFDRLDWSFMVKLLQYMGFRGPFLQAVKLLYSNPKAYLKLNGDGGTPISIHNGTRQGCPLSPLLYAISIEPLAARIRTHPDIKGITINNEVYKISLFADDVLLTISNPVVSLPNLHKTLQQYSIISGYKINWSKTEALPMNIDTRTKKAMTQTFKYKWQTSHLKYLGIHITPKYEDLYRANYIPLLKKITQDLKEWDNYPLSWFGRIASIKMNILPKLLYLFETLPVAVPGAGLKNIQRDILRFVWGSAKGRVSRSILLTSRQQGGLAVPDISKYYDAAQLRQTLPWIQPTPPTRWAQIEASYTYPYHISCLLFVEKGKTLLPDTAPAPIKFTAMTWNRCKKKYKISGPHSLLTPILGNPEFSPGLLWNHKTTWAPINMTKIHNFMDPRNHKLYPYERLKEKYKWAKDKFMEYLQIQHFINSKLGTTAINPLTPYEKILSSPFPYKGLISHLYKLMVTIPEDPFPKHSYMRYWEEALGIELSDHTWSKIWDNANHIVTCTQQKESVYKVMMRWYMTPDRLSKIYPNSLPHCWRGCTARGTLSHILWQCPLVTSYWKEVGDLITSVLAIPLDIQPPHLLLGQPIARLKRPVQKLVNHITTAARLALTSKWKSHNIPNISEVITRVESNKRFETMTASITNNVQLNDNIWSPWEAYLASNPRENPEIHTSTNNMSDGN
>L1-47_XT_gag#LINE/L1 137-1246  [Xenopus tropicalis]
MGKRKPKETAGTMSPYINKYSSIDKHAVSQDGGEQEDELTQVPNSPATASEGNSNSPPSSIQQVKDSRPQYTADDTDPVTEKVLTQHLNTLHNALTATITDTVAQALAGVKAEIAELGDRTDKVETVVDDLVTGHNNLMEENKTLRTELNQIKLLCEDLENRNRRSNIRIRGIPEAVKQTDLKAYLRNLFSTLVPELPPEAWRLDRAHRALGTPQTNSKLPKDVITKLHYFESKDRVMTATRMRQTIEHQGATLQLYNDISSITLAKRRALRPLTQQLRDNKILYRWGYPFKLIINKDSRQYTLSDISQSGRLLTALGITETLPATSPPSSPRRDVIQTIWEKSTTKKATNTNKPTSPIGIGNPYDLLAT
>L1-47_XT_pol#LINE/L1 1767-5564  [Xenopus tropicalis]
MVKLLSLNVKGSNSPTKRKLIMTELRKQHVDIAFLQETHHASDEAWRLQDRNYPHHFYASSKTKKAGVAILFNKTLTFQHRQKEVDPNGRYIILEGILEGVQIVIANIYAPNVRQIHFLQRVLNKIATYQNHKVILGGDFNMVFSQLRDILRPHTAPPNKDTALCSQNFRKLMRRAMLLDIWRIKHPTQKNYTFYSHPHKTYSRIDYFFISPRLSSQDLKTHIDQITWSDHAPILLNIPLQIDRSPVNSWRLNESLVTHRDTQQTLSEKIKDYFTLNKGTTLDPAILWEAHKAYIRGEFISLASAAKKRRNNTLQEHKKRLHYLEHNYSQRPTKRLLLDIIQTRNNIKDMMLHTVEKALRWTQQKYYQYANKSHTLLANKLRGERAKNTPTVIQHKGKLESNPGKIVECFKEFYKQLYNLPPHKTPRETLIQFLQDSKLPTLTTAELRALNATITAEEIAEVIKHLPSNKTPGPDGLTYKYYKLFSKELLPTMLDLFNGYLQGTPIHKETLKSHITVIPKEGKDPTSCANYRPISLLNSDLKIFTKILANRLNIILPRLIHLDQVGFVKYRQPGDNTRRVIDLIDSLNRKREEALILSLDAEKAFDRLDWGFMFATLETMKFQGPFLQALRALYSHPTAIVKTAGLLSQPLSITNGTRQGCPLSPLLFVLCIEPLAAQIRHNPDIKGVTIKQKEYKICLYADDVLLTLTRPLLSLPNLHQIITTYGKLSGYKINNAKTEALPMHIPASKLKLLQLNFNYNWRKDTLKYLGIHLTTSYDTLYKHNFTPMWKLLITELDTWHNYNLSWFGKVAALKMNLLPRLLYLFETLPIPVPKSAFKHFQSKCLRFMWGRKRHRIRIQVLQAKRTQGGIGFPNFYKYYLATHFRQLTYWNQKIAHTKWAEIEMLQMNPIHPAALLWSEGLKGDIGSLHKPAQFNLKLWFAKDNLLKPQSATSPLTPFLNNPGFKLGMEKHFIKIWEHTKAFQIQQLFDWKTHKFIDKAELIQLYQLQGLTDYMYYQLRHYVGSLCPRLLKRDLTMFEHICSRSTSQKGLISTLYNILTDQDIENSPHPYMQHWDTELGIHITLEQWEKIWRIASKTSICTTLKENLYKVFLEWYHTPFLLQKLFPGTTSACWRCNHNPATIYHIFWTCPVISALWDKTSEILSKITCLSLQKDPLTYLLGLPLQGIGKRVQKVVQSVLLGTRCLIAAHWKSPTMPPIPELIKKIQFIRSMDYLTAILQDKALPFAEDWFLWDSYYGQLHNHVDTI
>L1-48_XT_gag#LINE/L1 249-1223  [Xenopus tropicalis]
MDAPPDSSPPSSPGIKDSDATAHMPQTGEITAVQTLTTHTAELVTVQVLSQQLADFHEKLTGSITDTIRGALKDIQSDITNLGERTDQLEVTVDELILRHNSLEEENSTLRDELISLKSHVEDLENRSRRQNLRIRGVPEEVTAQEIRPYLRSLFSTISPDLPAEAWRFDRAHRALGARPPNVTTPKDIVVCLHYFESKESIIIKTRNIQHFDHQGHKIQIFNDISPITLNKRRELRPITQRLREHNIQYRWGFPFKLIVTKGNRQYILYDPSQGPKFLKDIGLPTLELQHPPPNRKRQQQDRLTPIWNKTGPNTTKPDSPPRAS
>L1-48_XT_pol#LINE/L1 1697-5490 via tfasty with L1-1_DR_pol, 1 frameshift. [Xenopus tropicalis]
MVKILTLNVNGLNSIMKRYMLTRELNRQRPDITMIQESHLKSPDDLSLETKFYTKIYQATTNVKKAGLITLIHRDCPFEVQNIQADPKGRFLILNGLLEGKPLKLANIYAPNKNQLRFLRSTLTKARGDSQIPIIIGGDDNLVPSETRDGSHPPQLQQYKDQCQKFRQLLQKLDLRDLWRIHHPNERAYTFYSAPHQLYSRLDLFLGSRDLLMYPATSDLIPIPWTDDHAVTLDIHFSTSIRKPTHWRLNEVLLNDPQISSSIAQTIKDYFIDNAHSVENVSVLWEAHKAVLRGKFMSIASARKKKKMSTKVTLEQKLSQLECKIHTDASVKLRKEILEVRRELKMLASGEIEKALKWTKQKFYERGDKPHSLLARKLREQTARSTIVSIDKANGDRTFSPKEISKAFQDYYTKLYNLPTSVAQSQESQTAARQTFLKENLHTTLMQHDIDKLNKPILEEEVAGVIKSLPTSKAPGPDGYTYAYYKKFSPLLSPYLTKLFNSFMSNNTIPHTMLQSYITLIPKEGKDPNLCGNYRPIALLNSDLKIFTKLLANRLGPLMPQLINLDQVGFIYGRQAGDNTRRAIDLIDALNKTKTPALLLSLDAEKAFDRLNWDYMFELLKQIGIKGPFLRAIQHLYSKPTATLKLPEASHGLIPISNGTRQGCPLSPLLYALSIEPLASAIRNHKDITGPKIQDQEFVISLFADDILLTLTNPTISLPNLHVLLTQYSKHSGYKLNVDKTEALPLNLPSQTREALSTKFHYKWKTHSLKYLGIQLTKTYHQLYQSNFPPLIQEIKSLLHKWNTLTISWLGRITVTKMAILPKLLYLFETLPVRVPKTTLKDLQAAIFKFIWGKRRHRIARTVMMASKTQGGLAVPHLQAYYEASHLRQILGWTTFAPSTKWAHIESTLDLPTHPNSLLWDGKGKGISDILYPMHFTLTLWKVCKDKYRLANQASVVKPFLANPSFTPGMSESFKNYWGPKGVFRIYDLLDPLTLKQRSFAEIQNKYHIPNSRFFEYLQIRHFIQANLPKDPSLLSLTTFEKLCMTGLPRRALISTLYSLLTSLPEDPFPKHSYMLKWEEITSTTLPLDEWADIWDNVRRTATCVRQKESIYKTMLFWYDTPVKLSHMFPGTSPLCWRNCGEQGTLQHIMWHCPIISPLWKEIEGILSRILFKETPLDIYTALVGRPILDNTAAEQKLTNFVLTATRLAITKKWKDPVPPRLGDVLLKVRDMREMELMTANVYDRRKQWERVWSKWDYYIANIRR
>L1-49_XT_gag#LINE/L1 138-1255 via tfasty with L1-13_DR_gag, 1 frameshift. [Xenopus tropicalis]
MGKKTVKPREQRVTMSPFLHKALTQDTHLSQDGGDPDTCAPDLPSSIDLPPQTVSPASSPLSTPMPQSPPHSPLSSGLPEQPVTVQILSEQLSQLHNALTATISQTVSSAVNSAVKELQRDITDLGNRTDKLETYTDDIAQRITYIEEENFSLKEEVTHLRDMCEDLENRSRRSNLRFRGIPEEVPASDIANYLKNLCAHICPDIPAEPMDRAHRSLGPKPLATKPPRDIIACFHYYQSKEAVLANTRTTNTIEFRNHKIQIFADLSPITLAKRRELKPITSKLRESGIPYRWGYPFKLIVNRYGQTYSLQNPSNGNKFLQALGLNLKGPIRPAHSPPLRPGNTNTLGQQWHTVQKQRSPPRLALSPSPPRIT
>L1-49_XT_pol#LINE/L1 1825-5606 via tfasty with L1-12_DR_pol, 1 frameshift and 1 stopcodon. [Xenopus tropicalis]
MAKLISLNVKGLNSIHKRYLTLKEIKQSGADIAFIQETHFSKEGPHKLYSKFYPTAYYASGPHKKAGVAILVHKDSLLTVDQTLQDPKGHYLILIGNYADVPIMLINVYSPNTRQISFLRKVISKSHSFIAPFVIMGGDFNLTYSQTTDRSFPSKDHTAHILSTRFRQIMRQASLYDAWRITHPKDRQYTYYSPVYKNHSRIDYFFISHSCLRLQFSANIMPLTWSDHAPQLxISPNNPQENTHWRLHETILHEPEVYKSTEAKLKEFFQLNEGSVNSLSTLWEAHKATIRGHFIALTSHRKKTARTQYDTLHKNLRDLEAQYITQNTDNLLAQIIQTRTELATLKHKAVEKAIIWTKQTYYEKADKQHTLLARKLRDQKTQSRINAIQLPSGSLTHNPDEIGAQFHDFYQKLYNLPKHTPNQGNQITLISDFLKNLNLPKLTDHDLHILNREIDSEELASTLKQMPNGKTPGPDGFPYKYYKLFHHILSPYLLKLFNQFLQGTPIPNTSLMSHLSLLAKEGKDPTQCTNYRPIALLNSDLKLFSKVLANRLAPILPKLIHKDQVGFIQGRQAGDNTRRAIDLIEILHRQKTPSLVLSLDAEKAFDRLNWPYLFSLLKHLNFTGPYLTALQKLYSTPTTYLKLPGQSGKPISISNGTRQGCPLSPLLYALSIEPLAAAIRAHPDIKGVAAESGQHKIALFADDVLLTLTNPMISLPNLHQTLTQFSTFSGHKLNLNKSEALPLNIPQKPLEALKANFNYKWKTDSITYLGTHIPGTYGQIFDLNFKPLIRNTKTKLAEWAKYPISWFGRIAALKMAILPKFLYLFETLPTPIPAKILKDIQASFHKFIWNSGRHRIPKSVVTTATRRGGLGVPNLQKYYEATHLRQLLAWSTWSPPTIWGQIESDTYKEANLNSIIWSKTGKMHLSPSMLPSTRLTLTIWARLKHKHNLTSDLSSNTIYLRNPNFPPGMDPSFHKRWAELNLHTVKDLLEPRHHTVLPFQTLKDKAPQLNLRQFEYLQLQHFLTPYANFARANHPTTFETIARRGLPQKGLISALYNILTTAPEGSQTRHKYMNKWDMILTQPLSEADWTNIWDNAKKMSTCVRQKEHIYKILMFCYHTPEKLNKLFPDHPPNCWRGCGSQGSLQHIFWECPTIQPIWTEIANLLSRLFSREVPLDPTILLLGKPLPKMRKCGQTLANQILTATRLAIAAKWKSPIAPSMTEIINRVNSNRKFEYGIATLHNNTPQHLKIWDIWELHGLAT
>L1-50A_XT_gag#LINE/L1 147-1286 L1-50_XT_gag 87% identical [Xenopus tropicalis]
MMGKRKPNEQRTTMSPYLHKTPGRKRAESQDGGDSVTLETLPELQPSPHSPASLYSEDDPAVQPGTGQSLEGDTLYMSPNTPDNSPVTAQTLAHQLSLLKEGLTATLSKAVSDAVASAIKDIHKEIRELGDRTDKLEYLTDEVIQRHANLEDESMALREEISQLKNTCEDLENRSRRQNLRIRGVPEELEAAEIPQYLKGLFTKICPDCPPDKWEFDRAHRSLGPRPPPTKPPRDIVVCFHYYIQKEAVLTNARTKSTLEYLNHKLQIFADLSPTTLAKRREFRPLTQLLRDNNIPYRWGYPFRLIVQHRGQSYTLHSLERRQQLLQALGLTGSKQNSPLKQPTSKGRMSPQWHKVPETHPPQRLTPSPTAPPGSLAQIT
>L1-50A_XT_pol#LINE/L1 1759-5613 L1-50_XT_pol over 90% identical [Xenopus tropicalis]
MVNFISLNCKGLNSITKRYLAIKELRNLKADIALLQETHFSRLSPGKLYSKYYPTGYYASSDTKKAGVAIVIHKDCPLQVTKETSDPKGHYLILEGTLADQPLLIANIYAPNKGQTKFIKKVLNKVATHSTPYVIIGGDFNTPLSQLEDRSHPSPDTSAHTTSRETRHLFNKASLYDIWRIDHPRAKQYTFYSTVHKIHTRLDYFLVSQPCLRIQYSAEIAPITWSDHAPIQLTLNLMSCPKRTSHWRLNETLLHEQDSYKAIEQAIKEYFTLNEGTVTSLPTLWEAHKATIRGTLIAITSGKKKAQKQQLHTLLNQLKTLETQYNQNNSDILLKEMVSLRAELKNLQLKEVEKALVWTRQKFYEHGDKQHTILARKLKDQKLAATIKVIKNNSGQPVYNPDLIAEQFYNYYTELYNIKKDGTPSSTDLENFFRTANLPKFQERDLELLNQEITLEEITATIKQLPNGKTPGPDGFPYQYYKLYQHILSPYLAKLYNQYLQGEPIPPSDLTSYLSLIPKEGKDHTLCANYRPIALLNSDLKIFSKILANRLAPLLPRLINPDQVGFIQGRQAGDNTRRLINTVEILQRQGHPAVILSLDAEKAFDRLDWPYMFTLLQHLKLHGPYLTALKALYTAPSTYLKLPGKTNTPIKISNGTRQGCPLSPLLYALGIEPLAANIRNDPQIKGVTIGTEVFKIALYADDVILTITSPHTSLAALHNLLEQYGTLSGYKVNVTKTEALTIHITDSAAQSLRTKYKYRWKTDYITYLGTKITPKYEDLYTENFIPLASTTRASLHKWNVQGISWFGKIASIKMNILPKFLYLFETLPVEIPLKYFKEIHTAFNNFVWGYKHHRISKKVLNTSNNQGSLGLPTLYKYYEASHIRQILAWSRWSPEMPWVKIENEQFNPYHPNAWFWPSQTCTLPRVNMLKATALTLKVWKKAKLKYKLSSPYSPLTAVLGNPMFLPLATALPTRPRERISLFVVRDLLNPTSTSILPLETLQQKIPNLRLHWYVYFQLRHFLEPFIRYSQSNSHTQFESLAHRGLPQKGLISRIHALISDPFLEQGYKHPYMLKWEKAIGSEITMEDWDLIWGNAKTSVTCTKQKENLYKILMFWYLTPTRLNKIYPEHPQTCWRCGEAPGDVPHIFWFCPLLQPLWDKVQDLLSSLMHQTIPKTITTLLLGRPLTGLTKPQQKLANHILTAVRISIASKWKTPTLPTWEELYQRIESNRNFESRIAYLRNTTPAYLKVWSAWELRSLTQRGQGHITAPTGTATDTTPPQPNFLQ
>L1-51_XT_gag#LINE/L1 136-1182  [Xenopus tropicalis]
MGKAKKKASPMKMTAFYPKTGSQVDAYSSSQDGADSNSSSPTRITEGTGIVAQSLATTNTQPNITLPILKDLLTSLRSDIQADFKNAMAELNHEVRQLEGRTDHLENKMAELVSSHNELIDANSTLESEVDKLTNKLADIEDRNRRNNLRIRGVPEQIKMEDLNHYLTEMLQTLLPQEKLEHLLVDRAHRLPRNKNAPPGAPREVILRLHFYHIKELTLNAFRNKQELPDKYTTLQCYPDLSAHTMKKRKDFAQVTVILREADIPYRWLFPVKLRVVYKDTPYIMDTPQQGNHLLKQWSLLPPQETPQKQPPKKQRLQQEWQTTKNSHKRAPSISTILEQVDQENNENT
>L1-51_XT_pol#LINE/L1 1642-5460  [Xenopus tropicalis]
MHHKQPTPMASTITTLNVNGLNSPNKRSQLIHWAKREKPKILCIQETHLITGQPTRLTNKEYPNQLYANSPIKKKGVAIWFHKTLTPQIIQEHPDPEGRYLIILAQIQGQNYTIASVYAPTTKQSAFYRKFFKELNKLKQGRIIIGGDFNIPLQHQADTKSEKQKNARPETSTHALNLKKHLKHHALYDAWRECNPKEKDYTYFSYPHARYSRIDYILVDKTTLQLLTKAHIGTRTWTDHAPVTISTKFSQTSPSTSHWRLNESLLNNNKVIQECNQTLKDYFSLNSTPDISQPTLWCAHKAVIRGQLIKTASLNKKQREQTMLDLTKQLNELEIQNKAQPKSQTTKLIRSIKGKIHELELIKINFQLRKLRLNYYTKGNKASKLLAKILQQKQQSQTIDHLLDSTGAKITNPKAIADVFATYYSTLYNLEKDPNTSQPSQQGIQTFLSKAKLPQISQDHLDLLNAPIQPMEIQTAINTTSPGKAPGPDGLPTIYYKTFQAILLPHLTQLFNQIFQQGNFPEEMLKATITTIPKPGKSPTQCPNFRPISLLNCDLKIYAKILANRIKEILPTIIHQDQSGFTKGRQGLDNTRKMLALIEKANHQKMPVILLALDAEKAFDRVHWQYMTNTLKAFGLQGNILHAISTLYSKPTAQVTNMGFLSNPFQITNGTRQGCPLSPLIYNIVLEPLAKTIRDSIEITGIKAGTTEHKLALFADDIILTLSNPKQSVQKAFQILENYSRISYYKLNITKTQALPLNLPKPEQNDLKKDYSFQWKQETLTYLGIELANNIPNTYSNNYPKLLKQIQSQLENWKPLYISWLGRMAAIKMMTLPKLLYLFRALPITLPQTFLRQIQTTIDTFIWNGKKPRIKRKHMQQHTKEGGFGVPSIENYYKAAILEQLAMWNLPPDHKHWLQIEQEKIQPLTLQQLMWSEKPLQLTKGKTIYHTTTTALKIWTQQKAQKHIHNFPAKLSPLNTLETMIPNLSITNWSHLGIQNLEQLITDNTMKPYEELQRDYKLPKHDLYKYLQIRHLLTPYLKNIPDQQTEYEKWCFNKAGNKKGLSKIYRTLLSHKSDEKPNHIQKWEKDLNTTFTQAQWLQAANAAYKYSKCTNHIENQRKILYRWYKTPSILHQIYPTSSPNCWRCNTEKGTLLHIWWECPILAPFWTEVSQLLYDTMNLHIPLTAPLALLNHGIQDLPQDLQKLTFHIITSARLLIPRLWKTSTIPTKEDLIYLTDSNLTYEQHAAQQLSKTTNKDKITQQIWRTWTKKHTSIT
>L1-52_XT#LINE/L1 696-4784  [Xenopus tropicalis]
MPTXXWVGECLEASYKKKTRGVATIFNKTLNYKTLKTYKDKQGRFLLLQIEIANTKYTIANIYAPNDNNQPFFTDLMQRLDSWEAAHIIFGGDMNVTWDRLLDNSGTAPTQTTDKAKHLKTLCKHIDIYDSFRYMNPTSKDYTFYSGVHKTFSRIDYIFTSQSLLPHIQKAEIKDIIISDHAPISLHMQNPQPQPRSFNWRFPSYLSHSEDFKQYVKTSLANYIDDNLTHWDNPNLLWAAAKPVLRGQITAYLAYRRKQFNIKYMTLQQELSQAYIQLKNHNNKETQNKYKEIKNLFDTLLTEKAQLSLDYKRNKYFRWGNKTGKLLASITKKQNLQPHIHKLQGKQGWITDTKEITEEMTQYFQSFYDLEQDNPTEGIKFLQEAHLTKLTIEERNLLNAPVTETDIQTTIKKLKSGKSPGPDGLSAEFYKILAPELTPLLLDLYNNTLQGLPLWPEANEARIILLPKKDRDPTNPQSYRPISLLNQDLKILTKIMADRLQQILPRILSPCQLGFTKGRHSVKATRQILALIYQHNIEKRKHGILVNLDAEKAFDRIFHAHLLRILKFQHFGHQLLKLFRALYSTPTAFLTINNLNSDRFYIKKGTRQGCPLSPLFFNLALDPLLRHLRQNPLFQGFTTKHLCHKIVAFADDILLFIGNPKQDIPIILETINRYTTFTGLKINYDKSEAIKLRHTATSDWTHNFPFKKAQHHITYLGVKFTDHHADTYKLNITQTILDLQHELNKWKTASLTFLGRAYLIKMIYFPMLLYKIQMLPYYLKQKDLKLANKIFREFIWTNKRPRIAMYKLQQTKTNGGINFPNLYNYNVAALLRHVGDWTYNTNTYSNLELEHTLMEATNLNFLLHLPPNELTTNQKNNPLFIHTYKAWHTIRHKHKTTKNLSLYLPWTGNTNFPSGLMTNVFAKWKQEGLHCIRDILNKKLSLMTFTEATAKFPFLQTQHFHFIQATHYAREVLRQLTEQDLTSPMNHIWKGANTHHSTASIHRLIRLNPNDTHKDTSLRKWTDTIPNADEQHILKLHLHAMRLTPSSQYQIMTLQLLHQSYLTPSRRFKMGQLDNPKCLRCKKDEGSLTHCIWQCPIIQPLWTQIHEYWNQLTKKKFIPDIEWALFSKIKGGRQITKSDRALAGKLAAATRKAILQEWLSVTPPSINLVKNRLHFLFHMDWLEASTNKTIHTHSFFDTWTTYILNLPPDVRQLTVDTFKNTIWYDQESLRGTNPLLQAITAPR
>L1-57_XT_gag#LINE/L1 133-1122  [Xenopus tropicalis]
MPVRGNKKPPQQDLTPFLAKAKQTPPKTQDGAESSEPTAQESNSESEDTETANLAPVTVSVMKKLLSDFKSSLNADINEAIHLLRTDVQNIGQRVNSLEQAVDEVRGTQNQYSDCLNSFNKQLLAMKDKMADIEDRARRNNVRIRGIPEQITQEELPSYFHTLLSTVLPNLVPTELMIDRIHRIPKPKNLSIDTPRDTIVRIHFYTIKDRLLNHFRSKAQLPPQYQNLHIYADLSAHTLLRRKEFSMTTNILRSHGIVYKWGFPVKLIILRNGSQHLFSTPKEAIAALTDWGLTDLQMDISTPKIPKKRSLDWSTVSPRKDKQQQRPAPT
>L1-57_XT_pol#LINE/L1 1617-5432  L1-58_XT_pol about 90% identical. [Xenopus tropicalis]
MQLHIVSINAKGLNSPEKRKTVLNWARDSKIDILCLQETHFKAHSHTIFKSAFYTEAFYANAPVKKNGVAILIRNSIPISVKETFQDPKGRFLLLNFELYAHKYSILNIYAPNARQVKFVNKALKLLPDAFLDHRQVIVLGDFNIAPDPYLDKFPIPRGQALRTPLNLAKGLKQAIKKYALYDAWRAAHPAEKDFTYFSHVHLSHSRIDLILLDPFLLQNMDKVYIGIATWSDHAPVGLRLNLSAVPSPNISWKLNNSILSNPKNLEYLTKLTEDFKSFNPSSDYSPDLLWCTYKAFIRGHIISLTSEQKKKRQKILFELNAQLSTELSQLKKKPTEANSQKVTMLKRKINDINAEKMAYQLLILKQKYYSDDNKCGRLLTNKLREARAKTRIEAIKTKDGKTLTNPTQIAQEFANYYSTLYNLSKDPHTAQPTQTNIENFLASLSLPTLTQQHKDTLSQPFSANEVLQAIKILKNNKAPGPDGFSNNFYKKLVSSISPLLTQLFNNLSTNRSPRSELFQATITTIPKPGKDPNLVTNYRPISLLNSDIKIYAKILATRLNPLLKTLIVNDQVGFVPSRQAPDNTRKIINIALHANSNKIPCLLLSLDAEKAFDRVAWPYLKAVLIKFGFPDFFLNSTLALYTKPSAKILTNGFNSAPFFLTNGTRQGCPLSPLIFALIMEPLAETIRNSPLIQGYTIGTHVCKTSLFADDVIITMTDPINSLPALFQILQQFSLVSYYKINTTKTEALPIWVPNHTLVKLKSLYKFEWQQSSIKYLGIHVSFSVKNLYKDNFAPMFSKFQKLTQDWMYKDISWLGRLAAIKCNLLPKILYLFRTIPIHIPAKFFTSLQGLLTKFIWQKRKPRIAYSTMSNSKRNGGLALPNLKKYYQACHLNFLQRFFDTINPPQWLSQEFSATPTTGTPITSAIWIPPKLRQGKQDYLPTTEASLKIWDSLIHNDNLKNGLYPHFPIVGFQQLIDNLNLNAWMQTNITAFADLFQKSIYQPFSYLRSKFKVPNTTFLTYLQLSSYLKTNSLQKLKALSTDQERLFNLLKHPSKISQYYALLLEMNPQEISSYMKKWESEINTAIEPIDWNKAFSTLFSSISSIRLLETSVKLMYRWYMTPARLYRIFPATASNKCWRNCNQIGTLTHIWWDCPVISQFWLTIFPILSELFRIDIPISPRLALLNLDLDHIPWNKKRLLIHILAATRLLIARCWKSTTTPSLKEVTIILNNHSILEYFNARNNHLLHKYHAKWDLWNNSKYVGENPIRNFL
>L1-58_XT_gag#LINE/L1 133-1122  [Xenopus tropicalis]
MPGRGNKRQSQPDLTPFLAKPKQLVAKIQDGAAPLEQTTPDSNSETEETEMVNSTPVTVSVMKQLLGDFKSSLNADINEAIQLLRSNVLNIGQRVNSLEQTTEEIRATQNQYSDCLESFNKQLLTIKDKMADIEDRTRRNNIRIRGIPEQVTQEELPLYFRTLLATIMPQLTGTDLMTDRIHRIPKPKNLPVETPRDIIARVHFYTTKELLLNHFRNKTQLPPQYQNLQVYADLSAHTLIRRKEYMVATNILRNQGIPYKWGFPVRLIILRNGSQHSFFRPKEAIATLSEWGLSDLQMDTSTPKIPKKRPLDWSTVSPRKDKQQQRPAHV
>L1-59_XT_gag#LINE/L1 75-782  [Xenopus tropicalis]
MQADHETLETYKEKMYLMEEKLEDLENRSRRANLRLKGVPETETDLEKFALSLFSKILPNMPQEQLQMVRIHRVLAKPRNKESPRDIVLKFQYEATRDAVLQAARLLTRKDASQLPADIFDDLAPTTLQKRRQMREATQILQKAKIKYRWGFPFALHCIINNRYYTFKSADAALLVLGKEGLTAITPTMPTTNSPRPHNEWHTARSPRSSSTPDRQTPSPKPQRPKPDNPQEDNNR
>L1-59_XT_pol#LINE/L1 1205-4834  [Xenopus tropicalis]
MMALKVITHNARGLNSPRKRRQAFQWYERLHPDVICIQETHFTKTSHPQFFHRQYTRFYLASTPQKKHRGVAILLHNKLPVIITNTESDKEGQFISIMGTLYEKTIRITATYAPNDNPKAFFNRTAKKLTQTPVNIDIWCGDFNFPFNPVMDKSNSTHLAKDIRAAMATQDILNTKHYIDTWRELHPKTREYTYYSAPHMQYSRIDTILINSLATPTLKETYIKPCVWSDHDSVAISLQVIDIPKKSTQWRLNENLLSDPQLIIDSKIALNNYFRENTTPEITADIIWAAHKATIRGYFIQQAAKKQRKARETQNRLEKSLQILENQNQTKYSHQATKRIKAIKQELDALQKHKVDKAIRWTNFKYYKYCNKPDRFLANTLKDKTQINQIPGIKTTQGDITSNPEKIRDTFLEFYRKLYTQSHKPPKKIISKFLAQHPLPTLTKIELDRLNGDITLEDIGEAIKTLKSDKAPGPDGLSAGYYKKFSEILIPQLKTLFDYIAQGKTITPELLAAHITLIPKPNKDPLHPKHYRPISLLNLDLKILTSILAKRLSALLPRIIHKDQVGFIPYRQAGDNIRKILNIIHQANKTNTQMGILALDIEKAFDSLNWDYLEAVMQSIGIQGPFTKIIQTYYSTPTATLKLPTSTQQTIEIQKGTRQGCPLSPALFALAMEPLAIAIRQHQSIKGVEMAGADQKISLFADDLLLTIMNPLISLPNLLKLIQEFTQVSGLKINQDKSEFLPCNIPKNTVKLIELNFEFQIREKYLPYLGINLTPTLDTMYTRNYTPLYRNLVLELQGWNKKQISWVGRINCVKMMTLPKILYYFRTLPIAIKQTDLQKFQRTIMTFIWANKRPRINKKIMYLHKSKGGLGVPNLQQYYRAARCAQITALHGGKLTPLWAEMESALIHPTSLTSLIWNPSQDTKLHKDLSPITRQMLQLWTTLRYKYRLASNPSRLTPIWGNNLFAPGYNNNLFQWWKQQGIIYVYQLTDGIKPLQPTQIIQKYKVPITEHYRTIQIAHFVQQLWGKVTIQNTQMETICEKTPMGRKTLSMLYYQLNHTHTNNKLQCMKDWEHDLGIQLPQEIWLKNYQNICKGSYNVTIMETSLKLFHRTYYVPERLSRIYPTSSPLCFRKCTARGTMWHIWWTCPVAQELWTKVAGILSKIFYTNITPCPKVMLLGHKLQNLNNPAQRLTQHICMAARIHIAAQWKSN
>L1-62_XT_gag#LINE/L1 146-1141  [Xenopus tropicalis]
MATSKSRSQREAGNFFKRQQQDTQKAQDGDESPPHTSREDHSTCLTKSDLDNSLDKLLQKITNTFQAELKSAITNITKEITSLGTRTDLLESKHDDFTTAHNSLQQQVASLERSVHALSEHTEDLENRSRRNNIRIRNVPESYTDLRKLLDLLFTKLLPEYATELLLIDRVHRSLRPKPQHGEPPRDVVVRLHYFETKEDLLRSARTHEAVEIDGESIQMYQDLSPITLQKRRDLRPITSSLTKAGYKYRWGFPFRLTVVKNGVIHTLTDPTDGEAFLAKMGLPDSPPPPKLAKTTTTPLQPIWEKVATKRTATNKTSQQQGSPKHRSQTPG
>L1-62_XT_pol#LINE/L1 1681-5457  [Xenopus tropicalis]
MKLKFVSHNTKGLNTPVKRRMAGQYFHKIQADIVALQETHWCDKGPPPYIHRYYQQIYATTYHTKSRGVAIAFRPHVQFILTNSVIDTESRYILINGTIMGNPVTFLNLYAPPTGAKQFFTKVFELLTLHAQGTIVVMGDFNLVLDPRLDRSQHTTNPISTPPKFLKQLLQETSLIDIWRTLHPGDIDYTFYSPVHNSYSRIDLILISQWQLPNVKDASILNITWSDHAPTTLTLQLTHTPQPMYSWRLNESLLSDPTITTSITDDLQEYWLINLDEELSMGTIWAAHKTVIRGSFIRLASHKKKQRTETIVKLEKELRDLEAKHKISTEPNISQKLTETRSELQKLLVNKAEKAIRWSKHKLFRLKDKPNQLLSQKLRKAQGFKQISHINNSKGVKLVNPEDIIQEFHNFYSSLYDSPSLTSREKRDAFLETIPLPKLTQNERSLLNNPITEEEVIAAIKTLKSSSSPGPDGLPASYYKKFKEFLTPHLTTLFNDMMQGHSLPTDMLQANLSLLPKPNKDTTNIQNYRPISVLNVDIKLFSKILGSRLNKLMPKLIHPDQSGFILGRQTTDAIRRLLNIIADTNTSKSPILVLMLDVYKAFDSVTWPYLFNVLPRFNISGAFLEGLRVIYNNPTANIRLFHKPSPPIQIKRGTRQGCPLSPLLFALAMEPLAQLIRTNTDISGYTKGSKEYKISLYADDICMTLTKPLTGLPNLFQTLDRFHRISGLKVNISKTEALPINIPTPQKKLLELNFPFQWKQKTIAYLGVNITKSYESLYAANYPSILKKLRGRLADWTKLQISLFGRIATIHMIILPKLLYLFRALPTPIYAKEIHTFQREVMNFIWNSKRHRINKDTLFRAYTQGGQNVPHFLTYYRAARLTQLAQWHAAPNTIPWVDFENTSISPLQTSALLWATTRNTQHHHISNPIVTHHLKIWALLKPKILTHQRNSNLQPLVGNPDFIPGLNAKDFLWWTQNNFHKLADLITPRGLKTLDYLKENNNIPPSEHYRYAQIHHFYLSQKSIRPTMEMSGFELRCKTPTHLSGLITQIYRHLRTEPPNNMCKYMREWNADLPTPLPPQKWAQIWQSAKKISPNISVRETTYKLLARWYVTPALKNKFNPEFSSLCFRGCKAQGNYYHSWWLCPIVEKFWSQTFQLISQVLQTEVTIDQELALFSLPTTNLTKTQNKLTIQFIAAARWVIALNWLAPHLSISQLKSRIEYIQTMHYLTATLSDSLEQHLELWEPWTTFKTLSIRQSTE
>L1-63_XT_gag#LINE/L1 105-1238  [Xenopus tropicalis]
MIRAQKYKCDMGKRRNKEQAGTMSPYLQKASQSNRPEPIQDGVEIEREPAPLSPMSSSSGLEAPNPQSPGQSQPALTLTPEIMDSQTQPVTAQILTEQLQNLQQTLTSSITKTLSEAIQHLRAEIDELGERTDKVESITDDLAQRYATLEDDNTAMKEEIYQLKLLCEDLENRSRRQNLRIRGIPEEVGPQLLQQYLRDLFLSLCPDLTDETCRLDRAHRSLAAKPPPSNPPRDVVICFHYYESKETILAKSRQQQDLTFRNNKISIFSDLSPTTLARRRELRPVTQALRDNNIPYRWGFPFRLMVNKDGKQYTLQDPSNNKSFLSRLGINAASKDQAALYGPTRPRPQPIWTKVQAAARRSPTASQAPTPLRESTWT
>L1-63_XT_pol#LINE/L1 1719-5528 via tfasty with L1-10_DR_pol, 2 stopcodons. [Xenopus tropicalis]
MVKILSINAKGLNSIAKRCLLFKELKNAAADIAYVQETHFPSQTSAHLTSKFYPTTIYASGPHKKAGVAILIHKNCPFITETTYKTQKGHYLIIRGTLAGTPISLVNIYSPNKHQIRFLRKVLGKNQHLLAPYTILGGDFNLVLSQDRDRTHPSPDKTSTLMSKEFRQLMRQHILQDAWRINHPRDRQFTFYSNPHQIYSRLDYFFLSHSCLNLVFCSQILPISWSDHAPVILDIKIGPPPHKQPHWRLNETLLADTQTCSQIEEALKEYFRINSQTVSNTAILWEAHKATIRGNLISIASAKRKDQQSTLAQLSKRVQDLQLQHQATKSPTIWQKLQQTKEELQKYRMKEIDKTLKWSQQTFYQQGDKPYTLLANKLRERKAHTTIVKIKSPSGNITHHPEHIANHFQKYYTDLYNLNLTGTSHTQTPTIALQEFLSNTNLPKLNTEDIKLLNAEISTEEILTTLKTLPNGKTPGPDGFPYVYYKTFQKIFLPHLLKLYNKFLKGTPIPTTMLTSHLTLLPKEGKDPSLCSSYRPIALLNSDLKLFTKILANRLTTIAPKLIHDDQVGFILGRQAGDNTRRTTNILEIIQRQNKPALLLGLDAEKAFDRLSWPYLFNLLTHMGFRGSFFTAIKSIYSNPTTTLKIPGATGKNIPISNGTRQGCPLSPLLYAISIEPLAAYIRNQPDIKGITIAKKEYKIALFADNVLLSLSNPQISLPILHDTLNIYGKLSGYKLNIDKSEALPLCMPTRMKEALQSKFRYKxKNDYITYLGVRITPKYTDLYKQNFPPLIQQTKVSLQKWLNYPISWFGRITAIKMNILAKFLYLFKTLPILVPAKILNNIQAAFYKYIWGNKRPRILRSVLVTSRLQGGLGVPSIQKYHDAAHLRHISVWTTPNNTPLWSQIENDHLQPLHMGALLFNPCPHINPPKTTLCSTKTVLQIWRRLKHKHKLAPENSLLAPVFHNPLFPPGTQKSFYYNWKAKGFFKILDLVTPNTVQCLQYESISDKNPEIRLILxVSTIRHFINRFVRVREGPYLSPFETLVKKGWPQKALLSNIYKILLSPPDMGTPSHKYMQQWERDLNLTIESEVWDSIWNNAKQMVTCVKQKESIYKIILRWYQTPVRVNKFSPSVPNTCWRGCQDLGTLHHLFWTCPHITQFWEEVREIMEQVTRRVIPRDPLTFLLGKPLKDIPKCAQKLLNHILTAARIAIAASWRKTIAPSIAEVHKRLVRNMSFENTIAQLQNKMPKYMDIWAPYELLAKPPSTSTQTT
>L1-64_XT_pol#LINE/L1 795-4517  [Xenopus tropicalis]
MATHLKIVSHNAQGLNSPHKRTKAFTYYNSTHTDILCIQETHFSQTSSPKYLSRHFPTFYSSSGPDKTKGVLIALRKNLPLTFSQQIRDDQGRYLILIGEIFDSPITIATYYAPNTQQNHFFEQFLQKITDCHSGPIILAGDTNTVLDTYWDKSHPNIPNPQMITDSPTRLKKMLLRLNLIDSWREFHPHGKEYTHYSNPHGTYSRIDHILVSQILIPNTCQAHILTTPWSDHSPTTLTLTSLWQRPTDFNWRLNDSLLKIKSNFSPIKQAVENYFTENQGSVSSPITLWEAHKTVIRGEIIKIASIKKKQTTEKIKELEHQLQDTTRQDQITPSPSLKATISRLRTDLDLLLSQATEKQLQWTNQRFYTQSNKIGTLLARKLNQPTHQTPPPTTIRTRTGYLTSNPQKILQEFSTYYSTIYTKTKPFPSSTANKLLSTLQLPTLSAPQSESLDACITHEEVTKAIKDLKIAKSPGPDGFSGLYYKKLTALLTPHLTNMFNAIRLGETCNEESLKAQLSFIPKPRKDHLECANYRPISVMNIDIKLLTKILADRLNKFLPGLINSDQTGFILNRQTTDNIRRTLQLIHNFQITKQQGMLLSIDIHKAFDSISWDYLYFILNKWGIGPHFITILKSLYRFPKAIPKWGPYRGNPITIERGTRQGCPLSPILFILAIEPLAELIRQDKNITGPQIGQMMHKQCLYADDILMTITKPLTSLPNLIHLLDAFGNISGLTINHSKSEALNITLPQQTIKLLKLNFDFKWQNSTIHYLGVNIPSHIPTLYQHNYPQLWKMARENLQSWSKMDLSWFGRIHAFKMTLLPKILYLFRTLPIPIPDQDLKTMQRKIFKFIWADKHPRITRQTMYRSKQQGGLSVPQLQNYYIAAQLVPLIHMHALNPPKWVTILKHQLYPISPCALLWSPPLKRPKYPDPFLTHSMSVWDKYKHSAKLMSPTLPATPLFGNPLFPPGLSFAAFQWWMSKGFQFIYNFYSLSGLKTWPMIQNTHNPPPSEAFHYQQINHFIRTINKDNSTLTPTYFETVCIKYPYSKGLISNLYNLLLSIHSQDPLPYTQAWHKDLNTTITDEXWTQIWQTTASCSRNTSLLETTYKVLMRWYMVPSRLHKINPQLSKDCFRRCGQTGSMIHIWWDCPNVQRFWSRIYNIIYSVTQINLRKDPQNALLNVKIPNLNNHTRSLITFIFLTAKITIAKFWKTTQIPISHFKSKMNWVXXNDQLVYLQINMISS
>L1-65_XT_gag#LINE/L1 143-1137 via tfasty with L1-2_XT_gag, 1 frameshift and 1 stopcodon. [Xenopus tropicalis]
MPPKPKKSASADLRHIFQHNQKDQDGGQPEEQIDGEEADPITKQDLQLLFSNIEKMVKAEHTKTTKELTTEITSLGTRVGDLEKRLDDITDYTHQVDKDITTLYAQMEQIQYAQEDAENxSRRNNIRLRGIPETATDLEPLLTDMFQGLLPDDTSREARNGSRALRPKPSPEERPRDVIVRMHFYRVKAAILEAVRPTGEVEVEGHKIALYPDIAPSTLARRREFKPLTELLRQHKITYRWGYLFSLQVSHQNRKNHTEPKKQRKTPPHPPSPNRPTSGTKHKPPETAKQPQRGHMNQQRQKGKLIPQLQQPCFNSTCPESLRDTISPLNVV
>L1-65_XT_pol#LINE/L1 1441-4969 via tfasty with L1-16_DR_pol, 2 frameshifts and 1 stopcodon. [Xenopus tropicalis]
TLKIATLNCKGLNTPVKRRLACHDLLATGAQILILTETHLIRQKEPKYWHKNIDRKFFSSTKDKKTKGVGVLVHRNCPLQITRHQTDADGRILLINGTLPNTEVTLVAIYAPNEKQPEFFRQVDKFITQYRSGELIVAGDFNSVLIPSLDKSKHRSSTIPTATKSLRSLIKSQSLMDTWRTLNPDSKDYTYYSPPHDSYSRIDLILTSSSLIELLTDTKIIPCSWSDHEIMLSTFTLNTIRPRGEWKLNEWLLNFNPVTQEVTQSIPQYFSENQNGEVSEEIVWAAHKPVIRGILIKHAAHIRKQQLSKIKNLSAEILSLETSHKLNHDPNTLTSLINKKGELKQILIEKAEKSLRNSNRLFYEKGNKADTLLAKLLTNKNRPQMIQAIKTPTGTTTYKPKNILNQFAQYYANLYSRNRTSPTLTTPPKLKEFLESCNLPKISPADSQKLQTEITGDEITAVIKNLKPKKAPGPDGFSMLYYKKFIKELLPHMQSLFNNLLQNKCKIPPDMLRANITVIPKPPKDPLYCQNYRPISLINNDVKIYAKILADRLAKIMPQLIHPDQVGFIIGRDATDNIRRITHLLHHVEDLSIPSIFLSLDAEKAFDMVDWQFLKAVLENTGCHLNFSNAIMALYNHPTARVHSSGYYSDPFCIYNGTRQGCPMSPLLFALCIEPLAQRVRLNPNITGINIGKDTFKIALFADDTLLTLTHPQTSLPNLFNEITNYAKLSGFRVNNSKSEAIAISLQHHHQKLQNLISLINSWEKQHISWLGRLHTLKMMIVPKILYLFRTLPIPINVTDLEKLQKRMLTFLWNNKPHRINKRVIMRSTLQGGLNFPNLLNYWKAAQLAQMVKMHCSPAAVRWVALETQLLAPQSPRSILWIARNYRPQITLTNPILRHTMRLWDKLLVKHKPWISSDPSPFVPIVNNPDFPPGTDSQAFQWWTTNQYTDIGSLTPLGNLLTWDDLKQKISNPQQRIFRYAQIKHFIQSKLGRSNRPKNNLxTAKLPSTPQTTWLYNELNSHKIPNKTKHMIRWEQRLNVTIDDDQWQSILENIKKASINTIIKENAYKILYDWYLTPQKLHKIYKSDPTCYRGCGEIGDELHIWWTCPQITTLWKEVFRFISQLLQKEIQPDPQLALLLNKPHHLTRAEFKLCSQICLATRCGIAKKCQHHHHSLK
>L1-66_XT_pol#LINE/L1 2-2621 via tfasty with L1-1_DR_pol, 1 frameshift. [Xenopus tropicalis]
ITAIKDKNQIIHQSTKQIAASFQEFYQKLYRIKTGTNSRSEIDKVKQFISSAHLPQLSKAQASKLEEPFTTLEINKIITELPNNKSPGPDGFSATYYKQFQSDLVNYLTTYFNSINLDQTFPNQAKEAHITIIAKPNKDPLLCASYRPISLINIDLKIYAKLLANRIKTIIPELIHPDQSGFVPFREGKDNTSRLISLIHHAQKAKIPSMLLTTDAEKAFDRVSWDFLKYTLLGFGLGEQTTGKILALYSNPTARIRINGTLSPVIHICNGTRQGCPLSPVLFILVMETLLSHIRLNKDITGIRLGHQEHKAIAFADDLLLFITKPHIALPNIMNLLDKFGVVSNFKINASKSEALSINLPPQEQKRIAGNFPFQWAKTSIKHLGANIAKDLTSLYSYNFIPLLTEIENTLKKWENNNKLSWFGRIQVIKMIITPKILYLLQLLPIKIPKSFFCKVKAIISRFIWNNKKPRQKYSKLILHKDSGGLSVPDIYMYYVSTHLQRILSWKTGIEKRKIWLELEQLLCKVPLYNLIWALPSNIPQELHHHPLIGATLKIWLEIRDEWGISPHPSPNTPLLNNLDFPPSLEKRTFDHWAETNNRTTVLADLLSAKGLLPLETIQKSRHTRPRDIWCYRQLHHYCTSSNLSKAIREVTWWEQMMYLSGRIKKPLSTIYKGLIKNSLCRDETLEYKWETKLGININSKIWLQIYRSMHKSSISSKTQESKFKLISQWYYTPIRLNKMFSNVSKLCWRCLNQNGTYKHIWFDCPKIKTFWANVMEIIQRTVPLHPKVNLAALIVLHYDSTTNQVVTNQLLLFMVQAAKSLIPKKWLQKSPPTISEWFSTMEEIKKFEEIKAMRHGTFSNLRKTWAPWYKNN
>L1-67_XT_gag#LINE/L1 122-1126  [Xenopus tropicalis]
MPSKGNKKHPQADLTSFLAKTNRPSLKPSDGAVGPEAGERALSENASDAEDTSATDTAPITVSILKSLLSDLKISLHSDIKEAIQTLRSDVHHIGNRVDAIEKQVDDISNVQNQYSDCLESLNKQVLTMKDKLADLEDRSRRNNIRIRGIPEQVKQEELTPYFETLLTTLLPHVNATHLTVDRIHRIPKPKNLPTEVPRDTIARIHFYSTKEALLRLFRLNTQIPDQYQSLHIYADLSVHTLNRRREFSLITDVLRKQGIPYKWGFPVRLIILRNGQQFSFTTPIEAKTILTDWGITETDTQMDISAPKIPKKRPLDWTTVSPRKEKQQQRSNPT
>L1-67_XT_pol#LINE/L1 1594-5203 via tfasty with L1-11_DR_pol, 1 frameshift. [Xenopus tropicalis]
MQLHLVTVNAKGLNSPAKRKMVLNWARDKNIDILCLQETHFKATYHPFSQTSFFSEAYYANAPVKKNGVAVLIRNNSPITVTNTMSDPHGRFIVLNFKVASKNYTLLNLYAPNTQQTKFIAKTLRQISSAINDTTHLIITGDFNMVPDPYIDKFPVLQGPSMRTAYNLSRRFQQLLKIHGLYDAWRAWHPSEKDFTYFSPPHLSHSRIDLLLLDKVLLQTTKKVYIGIATWSDHAPVGIILKLNSTPPPFSSWKMNNSILSNKANRELLTNLTNEYLKNNSLLEYNPEVIWCAYKAYMRGHIIALTSSIKKKDKNTTGTKSQLSTETTNLKLKPTEACSQKVASLKKQINDINLEKVAFQLTMLRQKYYSLDNKCGRLLSLKLREAKAKTRISSIKTADGKTITNPIHIAEEFANFYSKLYNLQRDASTPQPSASAIEQFLSTFSLPVITEGNLAALNNPITADEITQAIRMFKLDKSPGPDGFTNNFYKTMAQPILPMLTPLFNELKNPTTHREELFQATIITIPKAGKDPTSLANYRPISLLNTDIKLYAKILATRLNPILHQLIGNDQVGFIPKRQAPDNTRKLINIALHANKNKTPCLLLSLDAEKAFDRIAWPFLSAVLSKYGFKGPFLDSVMVLYSKPTARICASGYNSPFFHLTNGTRQGCPLSPLIFALLMEPLAEAIRTNPAIKGYTIGSHAYKISLFADDVILSLTDPAESLPSLFNTLSQFSLVSYYKVNTSKTEALPIWIDNHTLTQLKASYLLDWQQTSIKYLGIKLCISVKNLFKENFNPLLLKFHKSTQEWMYKDISWLGRIAAIKSNLLPKILYLFRTIPIQIPNQYFQSLQKLISKFIWKDCKPRLSVRILCKHKTDGGLGLPHFKKYYQASHLNFLQKIYLPVNQPQWVQQESDMALSQAAQFSHLMWIHPRTRPQQSKLFLTTQASLKIWDNYQFTDHISEGLHPLHPLVGFQKLIPNLNLTSWISSGLTKVADLYQGHTLLTFSQLQAKYKLSKNTFFTYLQLRNYLKTYQLDRPKNLSKQQLTLTNVMKQPSRISLLPIDAQNTISYLNNWEQDINAPIDPIDWNNAFLLITTTTNSVRLLETSVKLMYRWYMVPLKLSRIFPSSASNLCWRNCGQIGSFLHIWWDCTKISLYWKSIFDMLQNLFHTPLPCTPRLALLNLDLDNTEWNKKTLITHILASARF
>L1-68_XT_gag#LINE/L1 962-4634 via tfasty with L1-11_DR_pol, 5 frameshifts and 1 stopcodon. [Xenopus tropicalis]
MAVNIITHNAKGLNIPQKRRQALRYYKACKGDIVMIQETHFKTGQIPKWWDPAYQTYTMRHTQGNLRNLNFQLQESIIDQEGRYLFLKGTLNTKECLLGNVYAPSQADAQFYKGISTILDTNWKPLVIITGDFNTIADKHMDRYPPAQAGESHPNRSRLQSLMREHNLIDTWRLANPTGRDYTFYSHPHKTYTRIDYILLNQPHAGKIAKSTIGEISWSDHAIVTTTLVDLLTERPNYTWRLNEMLLLIPEVVTSILADLENYFLENDTGDTPTPMVWQAHKAVIRGTLIKIAAHRKRKRQERINKLKAELKNLEMQHKTHRDNKIYPELVKIKTELNLALSEDTYKAMLWTKQKFFEKANKPDTLLARRLRGLRKAQTIPLIKSKTGAITNNPKQINSAFVEFYSELYNGEKLSKQQTxYRVLHRYLQSCKLPKLNHDQLTFLNAPITMEEITDTIKSPGPDGFTGKYYKTFKETLAPQMVKLYNAFLTDTPIPPEMLISQIIVIHKEGKDPKLCSSYRPISLINTDIKIFAKILAERLNLLLPNLIHPDQVGFIRGRDAADNIRRTINIIDQVHANKQQTILLSLDAEKAFDRVDWRYLNTTLEAFGIIGPFLNAIKRLYTNPKAEVKTGSLRSPPFEIRSGTRQGCPLSPSSPLVFALCIEPLAQTIRLSPDITGVTIGEDIYKLSLFADDILLTLVNPQIALPNLYRELDKFGKISGYKINLTKCEALNLYIPHDRAIAMAQSCHFKWKPKAIKYLGVMLTKNSHDLSKNNYSPLIRLKKDIQRWHGYSISWLGRIYCIKMNILARILYLFRTLPIKYPKTEGKSLQRAMDKFIWEGKKARINRKLLQKSKYKGGLGVPDLFGYYKAAQFAQVQAWHMLDGQPRWVTLEQALVQDTKLSEIMWKPTPSAILKHGPPCIAHSLQLWATYKYRDKLCKPKSLMTPLLQNPTFLPGTTISDFRWWAQNGITKIGDLLTGSRVKSFNTLKEKYNIPPREHFRYLQLTHWVKTLLRGGCDGSYSKYESECKKGMKTKGTISRIYYHMIHETNSNPPKFQEQWSTDLNHPIEEEAWEEVYENITKISTNTLLKENGYKTIARWYMTPQKLHKIQNNIPPTCFRGCGEIGTYMHMWWECPQAKNVWELAFQEINACYGLTPEPKIALLNLFPVEAFHNESTKRLIIKICSATRMVIARHWKGPIPQAWAAIEAKLGEIMVMETIDKQ
>L1-99_Cis_gag#LINE/L1 1964-3331 [Ciona savignyi]
MSDKAKMHQAAPRGNMPIRSYARAARAREHTKQLERPNCLSIKGKIRLDRPKTLEIIKKLKFQKKIFGIAEMQGGIIDITCTSREAVLKLHEILEKQEEVQSVRLYQTDKIGIALGWVPIPMENGVIQEALKEFGCVHKIIRKTDKDGMVTGMRIVIMNKQDIKDNPIPSYIIIQGYEVYVTYTGQEKTCRFCSETGHVRLDCPHWRDEFPVMGEAREKSAQSGPTSREVTPRDVTTPTHVASSSSLAAESLLPKYDEGILEANSNKKTTATSGNKRPLSSPEEVSHSKIKSISLSDNKISVWCKTCNKEGLVAEESTKYLCWGCKNEFNVIKTCCTLDEFFLVSSADKSAVCPACREGMRLMPCCTTYQPTMHIADGTLQCPNCERYCADCNCGRFNYFLNKELSKPCENLKCKHRYIHCNCDKKYVTEISPEQPFKCKCGFEYDYNVKNGVKTT
>L1-99_Cis_pol#LINE/L1 3315-7121 [Ciona savignyi]
MVSRLLNLFIMALSVATYNVAGIRDNDKRNAVLNFIRQKRFNIILLQETHCSTEIQKRWELEWGSKIIWAHGTSRSKGVAILFDNKTPYKVGKTLIDPNGRFVIAEVGFSATTFVLVNVYAPNNDDPQFFRDLFQNIVSLAGINEVIIGGDLNIIMDATLDRHRPGASNKATATNVVRAHLQTLGLVDVFRSRNPQLKRFTRFQANPYSASRIDYLLTSKNXIPKITNCNIVPSIKSDHNIVYXKLALDTSDRGRGIWKLNTSLLDKNAFISTVKQAITDYGINNPPGHVNAHVRWDALKCTLRGTCINFSARLKRSAQKEQRRIENEIKMAETVLADSSIVAQSNVETLNKLKCELNDLVERRSKGAIIRSRVRWVEXGEKCXKYFLNLEKRNAEKKAIYRLESNGAILTDQAEIVNELATFYESLYKKSATLTPVEXISSHLSSLDIPCLDENTAKSIEYAITEVECRKALDTMPNNKSPGSDGFPAEFYKLFWVAIKSYFMDALHLTERNGYLSETQKHGVITLIPKPNKNLLLATNYRPITLLNVDYKIISKVINNRIKSLLPPLIHPDQNGFMKGRYIGNNIRLLFNLIDYCDAESIPGAIFNVDFYKAFDTLSWTFVNQMLKRWGFGQHIQNWIRTFYTDPSCSIINNNHVSKQFKSQRGVRQGDPLSPTLFVLAIEILAVEIRSXQIPGITVXEKEIKISMLADDTMITLDGEAKSFNLAYKILENYGKMSGCVINLQKSNAFYIGSKRSCDLKPLLNKGLPWPNDEIKYLGIVFPIGRNNNGRDLFNINMTEPLNKIKTLLNIWASRTLTLLGKXTVIKSLVIPTLTYKLSVIPTPPPIYSVFLKKLKQSIFHFIWGSKWERIKRTTLCRDIGEGGAKMLDIDAYILALQAKWIXNLLDSDYHAAWKDVENVYFSKAALAATLQSKLRETSNDIVRLFPLRALRTTAVAVRRVYSSGTRLDRINDPRYLWLNPNIKSRNRTFFIVDLAEAGITNYSQIINTEGNYMSFKELREAYSITDTLDNFTEFNKLICAVPEAWDXGDPQSPSKTDYSTKLFDLIENLKDYQTTKSIYNDVIAASATTSXKPQESWARSLDITIENWGQIYRDNYFCTLETRYRSFQIKLNNRAIVTNDKLHRMGFKDTNRCGFCKIEPETLTHLFYFCPKIKAYWNNVENWLSAAFRRPXSLTPQNCFFGIVNNCVINCILLCARFCIYRGKTTDTVPTIHLLISEVEALRKREMIIAKKXNKLXSHHRKWTTIPE
>L1-BT_gag#LINE/L1 3225-4148 [Bos taurus]
MKRQRNTQQIKEQDKCPPNQTKEEEIGNLPDKEFRIMIVKLIQNLETKMESQINSLETRIEKMQERFNKDLEEIKKSQYIMNNAISEIKNTLEATNSRITEAEDRISELEDRMVEINESERIKEKRIKRNEDNLRDLQDNIKRYNIRIIGVPEEEDKKKDHEKILEEIIVENFPKMGKEIITQVQETQRVPNRINPRRNTPRHILIKLTTIKHKEQILKAAREKQQITHKGIPIRITADLSIETLQARREWQDILKMMKENNLQPRLLYPARISFKYEGEIKSFSDKQKLREFCTTKPALQQILKDIL
>L1-BT_pol#LINE/L1 4204-8019 [Bos taurus]
MATGTYLSVITLNVNGLNAPTKRQRLAEWIQKQDPYICCLQETHLKTGDTYRLKVKGWKKIFHANRDQKKAGVAILISDKIDFKTKAVKRDKEGHYIMIKGSIQEEEITIINIYAPNTGAPQYVRQMLTSMKGEINNNTIIVGDFNTPLTPMDRSTKQKINKETQTLNDTIDQLDLIDIYRSFHPKTMNFTFFSSAHGTFSRIDHILGHKASLGKFKKIEIIPSIFSDHNAVRLDLNYRRKTIKNSNIWRLNNTLLNNQQITEEIKKEIKICIETNENENTTTQNLWDAVKAVLRGKFIAIQAHLKKQEKSQINNLTLHLKQLEKEEMKNPRVSRRKEILKIRAEINAKETKETIAKINKTKSWFFERINKIDKPLARLIKKQREKNQINKIRNENGEITTDNTEIQRIIRDYYQQLYANKMDNVEEMDKFLEKYNFPKLDQEEIENLNRPITTMEIETVIKNLSANKSPGPDGFTAEFYRKFREELTPILLKLFQKIAEEGKLPNSFYEATITLIPKPDKDPTKKENYRPISLMNIDAKILNKILAIRIQQHIKKIIHHDQVGFIPGMQGFFNIRKSINVIHHINKLKNKNHMIISIDAEKAFDKIQHPFMIKTLQKAGIEGTYLNIIKAIYDKPTANIILNGEKLKAFPLKSGTRQGCPLSPLLFNIVLEVLATAIRAEKEIKGIQIGKEEVKLSLFADDMILYIENPKDSTRKLLEIINDYSKVAGYKINTQKSLAFLYTNNEKTEREIKETIPFTIATERIKYLGIYLPKETKDLYLENYKTLVKEIKEDTNRWRNIPCSWIGRINIVKMSILPKAIYRFNAIPIKLPTVFFTELEQIISQFIWKYKKPRIAKAILRKKNGAGGINLPDFRLYYRATVIKTVWYWHKDRNMDQWNKIESPEINPRTYGHLIFDKGGKDIQWIKDNLFNKWCWEIWSTTCKRMKLDHFLTPYTKINSKWIKDLNVRPETIKLLEENIGKTLSDIYHSRILYDPPPRIMEIKAKINKWDLINLKSFCTSKETISKVKRQPSEWEKIIANEATDKQLISKIYKRLLQLNSRKINDPIKKWAKELNRHFSKKDIQMANKHMKRCSTSLIIREMQIKTTMRYHFTPVRMAAIQKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRFLKKLEIEPPYDPAIPLLGIHTEKTRRERDTCTPMFIAALFIIAKTWKQPRCPSADEWIRKLWYIYTMEYYSAIKKNTFESVLMRWMKLEPIIQSEVSQKEKHKYSILTHIYGI
>L1A_Oc_gag#LINE/L1 127-1183 via tfasty with L1M2_5end_1476-2645, 1 frameshift. [Oryctolagus]
MPSNKHRNRGSKINDDTMMPPNKQNTPSQEYEDDEIEEMQDTDFKKFMIRTFRSFQKQILELQKSLMDKIENLSRENEILRKSQNETQKLVEQESVIVKRNQNEMKSSIDQMANTLESLKNRMGEAEDRILDLEDRAQESIQSNQRKEEEIRNLKNIVGNLQDTIKKTNIRVLGVPEGMEREKGLEGLFSEILAENFPGLEKDRDILVQEAHRTPNKHDQKRSSPRHVVIKLTTVKHKEKILKCAREKHQITLRGSPIRLTADFSSETLQARREWRDIAQVLREKNCQPRILYPAKLSFVNEGEIKTFHSKQKLKDFVATCPALQKILKDVLHSETQKHGHQYERRERKNTYQ
>L1A_Oc_pol#LINE/L1 1193-5059 via tfasty with L1MA6_pol, 3 frameshifts and 1 stopcodon.  [Oryctolagus]
MGSSKHILENISGKMAGQSHYVSIVTLNINGLNSSVKRHRLDDWLTEHNPTICCLQETHLSNKEACRLKVKGWKKIFHANRNQKRAGVAILISDKINFNTKTVKRDKEGHYIMIKGSIQQEDVTIINVYAPNYRAPVYLKDMLRDLKGDLDSNTIVLGDFNTPLSEIDRSSGQKINKETADLIDTIAQMDLTDIYRTFNPTSTDFTFFSAAHGTFSRIDHILGHKASLSKFKRIRIIPCSFSDHSGMKLEISNSGNPRKYANTWRLNNMLLNEHWVIQEIKREIKNFLEVNEDNNTTYQNLWDTAKAVLRGKFIAIGAYIKKLERHQINELSVHLKDLEKLQQTKPKSSRRREIIKTREEINRIESKKKKTLQKISQARSWFFEKINKIDTPLAQLTKKRREKTQINKIRDEKVNVTTDTTEIKRIIRNYYKDLYASKQENLSEMDRFLDTCNLPKLNHEDIENLNRPITETEIETVIKALPTKKSPGPDGFTAEFYQTFKEELIPIILKLFRTIEKEGILPNSFYEASITLIPKPEKDAGLKENYRPISLMNIDAKILNKILANRIQQHIRKIIHPDQVGFIPGMQGWFNVRKSINVIHHINRLQKKNHMVISIDAEKAFDKIQHPFMMKTLSKLGIEGTFLNIIKAIYKKPTASILLNGEKLEAFPLKSGTRQGCPLSPLLFNIVLDVLARAIRQEKEIKGIQIKKEEVKLSLFADDMILYLEDPKNSTKRLLELIEEFGKVAGYKINAQKSTAFVYTSNAMAEKELLRSIPFTIATKTIKYLGINLTKDVKDLYDENYKTLKKEIEEDTKKWKNLPCSWIGRINIIKMSILPKAIYRFNAIPIKIPKTFFYDLEKMMLKFIWRHKRPRIAKAILYNKNKAGGITIPDFRTYYRAVVIKTAWYWYRNRWIDQWNRIETPEINPNIYSQLLFDQGSKTNSWSKDSLFNKWCWENWISTCRSMKQDPYLTSHTKIHSTWIKDLNPRPDTIKLLENIGETLQDIGTGKEFLEKTREAQAVKAKINYWDCIKLRSFCTAKETVRRVKRQPTEWEKIFANYATDKGLITRIYKEIKKLHNIKTNNPLKRWTKDLNRHFSKEEIQMANRHMKKCSRSLAIREMQIKTTMRFHLTPVRMVHMQKSTNNRCWXGCGEKGTLTHCWWECKLVKPLWKSVWRFLRNLNITLPFDPAIPLLGIYPKEFKLIKKKAVCTLMFVAAQFTIANTWNQPKCPSMVDWIKKLWDMYSLEYYTAVRNNEIQSFATKWRNLEHIMLSEVSQSQRDKYHMFSLIGDN
>L1Ci-A_gag#LINE/L1 gi|34392580|dbj|BAC82622.1| gag-like protein [Ciona intestinalis]
LRKDNKIKHTFLYESENIEVLIGWVPVPLQNKSIAEALQYYVAVQEVRSKKDKNGKLLGTRIAVIKKNDIDRSPLPSYIRVEGEELYVTYSGQLRTCKLCEQTGHKQAECPNRKNEFPALPQARSVSNAPRAPDALTSPDKNMASEPAGKNEDKENAPKETEAKTTNIITTPKRKRRLVQSPSVDQPSPKSLSHGGENYGVKCGNCHREGFVHESNDRFYCFHCRTDFSVATPCCATNDRFLVAKNAKYTNCLYCKQKLIRTPCCHEYTPERNCIDNKLECLYCKTWSVMCSCHDLNVIPPKTTSITCNNTNCQRTILHCDCDKIVSSKLKDDKFLKCVCGKEFEIDTTNSGRET
>L1Ci-A_pol#LINE/L1 gi|34392581|dbj|BAC82623.1| pol-like protein [Ciona intestinalis]
MKIVSFNVNGLRNNAKRKCIFRFLKNKKFDVILLQETHSSLDVEVMWKREWGNAPTFFSHGTTSARGVCILLSPQQNWTVHHTESDTEGRFLIASISAGPKRLTLANVYGPNSDNPIFFDSFFGIINDYLDNDAIIGGDFNAILSNDLDKSPGNKHANGKSSSEIKNYMKEFDLVDIFRELNPRQRRFSRVQQNPFTGSRIDFFLVSEGLTPHIKNCDIEPSIKSDHRLVVLNINPQFKENGPGYWKLNNCLLDDPQFVNHLKSELGAFLTINETPDVSPHIIWDSLKCWLRGKFIKHAAEKRTSQTKEIDRIEKLLKATQRRIDSGEVSLQHKMRDLQSSLNTILEGKTRAAIVRSRTNWTENGEKNTKYFLSLEKRNKKRNTIVRLKQSGLVIADHREIMTTLKEFYRKLYSSRPTDTKQIDSHIRVAQLPQISEEEGSFLGKDISKTECYEALRKMGKNKSPGNDELSTAFYTTFWKEIGGAFIKSTNHALKMGLLSGSQRNGIITLIPKPDKDPLIVENYRPITLLNTDYKIISKVIAERLKLVMPRLIHDDQKGFFKDRYIGENIRLLFDVMDFAETENIPCVVLSLDLYKAFDLIEWVFIETVLQGYGLQSVVQWVKILFGKATGTINNAGFLSESFPIKRRVRQGDPLSPLLFVLAIECFAQHIRLNQCIEGINTADKELKILLFADDTLCFINGSSGSFNAMSEEIRWSKVVSGCKINLEKSVTCAIGSMVKTQSRSTAIQLKWTKESFKYLGVTTAVPGSNLDFFQINFSDPLSRIKRIINMWSRRGLTLLGKVTIVKTLIIPTLLFKLSVLPVDVPNAFTTSLNRSLFTFLWGSKWEKVNRKVLISPVAEGGINMMDITTYIAAQKLKWLYELFNPASQSTWKAIETLIPESYLWEAIKLNLPNNHALIKTVIPYRTLRSSLTAARLVIGPTSRKDNEQRNYLWLNKNVKLKKRLLFDKTLVEAGVTEYNQLLKPTGQYQTYEEVCEINNIAASTNHSLKFYELLNALPREWDQIQYKGNARTKEDITMLKDHLKDYAVSTKVAYQYFIQQVKEYPEKRRKKWEGELNLTTNFDWSNICQSNCYSTVETKLRSFQIKLKLRAVVTNACLFNFGMIDSPNCVFCNTETDSLVHMFTKCKMIQSFWENINGWIVAKFRKPLIITDDIKVFGIQHEKSPNLINCILLGVRFYVYRCKVQKHLPNVDSCIDYINEIRKTEKAIAMKSPL
>L1Ci-B_pol#LINE/L1 gi|34392583|dbj|BAC82624.1| pol-like protein [Ciona intestinalis]
MNTMLILVLENFNNNFPMTVNFATFNVAGLRNDKKRKTIFRYLQNKRYWILFLQETHCSREKQKLWEMEWQGEILWANGTNNSRGVAILFNKRLSYEVLNHAADPIGRWLMATIKINGTILTITNIYGPNRDEPQFFEDLFQKLLITQYTGATIIGGDFNVTINPALDRNIPTLRNKNSHRVLTTNMTAHNLSDPLRFNNPGLKVFTRIQNNPYAASRIDYFLVSKLVLSKLRAASIVPGVKSDHCVATFEVMLDPNPRGRGTWKLNSTVLSDVRYIKMIKAEIKEFCTFNPPQQFKPTLSWDALKCHLRGVTIKFCAEKTRALKAEQKEIENKIKKTESEITSIINPSLKLLQQREAQKNMLNTLVEKRTMGAIVRSRALWTEKGERSTKYFLNLERIRREKNTIFRLKSDNREITNQSAIIAELANFYQELYEPNRTNWNTEQIAAHLASLSPPRLTPEQSMVLETEVTEKECLFAINSMRNNKSPGNDGLPIEFYKAFWPTLKPVFMQAVQFSEKTGILSTTQTQGVITLVQKKDKDPHYATNYRPITLLNSDYKIISKVINNRMKCFLDDLIHKDQNGFINGRYIGDNIRLMFNMIEYCDLKQIPGAIISVDMYKAFDTISWEYIIETLKAFGFGSRIIKWIRTVYDAPKCAVTNNGYVSKYFDIRRGVRQGDPLSPTLFVMAIEMLAIELRASPFQGININSHETKLSLLADDTVIYTRGNLQDFNLIFQILRRFGHASGSVTNLNKSNAFYVGTKRNCTMRPMGNEGLAWPNDQITYLGVVIPLEMQSKRIFTLNSATIIKKVDIRLNIWSSRALTLLGKITVIKSLIIPILTYKLTVLPEIPPQTFINKLKQKLFRFIWKSKWEKINRTKMCTDIERGGAGMIDIETYLLTLNLRWIRNVLDPNYHASWKLIEKEFVDQNIMTVAMLSPMRDGCADFRRIFPLRALHKSVILLRRLFKKGIISDYRTDPRLLWLNPKIKTKQQSFLIEQFLTHGISSYHDLINEKGEYMGYNEIIKKWKVPYKETDFWSYNRLIKAIPDEWDREESPPANQTEYREYPEKLLKTVMDCHNTKHLYKTLVNISCEQTNKQGQTWATLLGIDPDWKKIYKTNYFCTLKTKFRSFQIKVNNLAIITNDKLFKFGIVDSGQCVFCESALETVHHIFCTCPKVILFWKEVSDWICATLRTPFVFQDEHFLFGVSDNPIVSCLLLCARFCVYRSKVAKNKTEIAHVLK
>L1Ci-C_gag#LINE/L1 gi|34392585|dbj|BAC82625.1| gag-like protein [Ciona intestinalis]
VDSRGSPTCTTRKAVLDLYELLIKVDALYSVRLYESDKVNVAVGWVPIPFPNEVIKSEFQNRCGEVKHIQHRKDRNGLLTGMRILTLDRADIEKNPIPSYITINNYEFYCTYNGQQITCKYCTKSGHKQQNCPKRKQDYPKLINKRNEKNQEDAECPETDKSGSKLSAAGGEIKERSKQNGEQLDHSTTAASGESNNLKPILPDKNQNIEMEPMPKVSRKRQERSPTEINLHQAKSISLSELKIPVSCPKCEEESYVTDQNTNFFCWKCSSEFRIATACCNDNDKFLVPNKEVTTNCSTCHLPMRKMPCCHTFQPEFQTDEGTFECIQCKRYSMTCICKTVNSIPKRTMTSNCTNNACNATLVHCSCGKKTCQNLEPDKPYQCECGFEYEYDIYIGVERS
>L1Ci-C_pol#LINE/L1 gi|34392586|dbj|BAC82626.1| pol-like protein [Ciona intestinalis]
MPLSLITYNVAGLQNPRKRRSIFYFLRQKKFDIICLQETHTTASCLRQWELEWVGEILASHGSTKSKGVAVLFSKKLSYSKQDVCVDNFGRYIIMNLEITDQRLTLCNVYGPNQDSPQFYGNLFTLLTKRQAESGIENCIISGDFNCVLNDKLDKTGGREKHGNRRAKTTILQAMNDLELYDVFRIKHPNSKQYTRMQKRPHTASRLDFVLATSEILQKTTQIQIVLSTQSDHCIVKLVLNLDKIPRGRGYWKMNTSLLEDAKFVENTKKWTAEFLINNDNGAVSPQVLWEALKCNIRGYIIKYASENNKKIKARQTNLENKLADLQNLPQPHDECTMGKIVQTQEQYDDIIESYSKSAIVRSRVRWAEYGGKNNAYFLNLEKRRMEKKAINRLNSNANIETDQQAILRLLKEYFETLYSSSNNPGRTSKSKIKEYTNSLMCPRLDAEKANECEGKLTVDKCYEALKTMQNNKSPGLDGFPAEFYKVFWKEINSTLVNAFNHAFEKGAFSGQMNWGVVTLIPKPEKDLLYPENYRPITLLNADYKIAAKAINNRIKNVLTTIIAPEQTGFIKGRYIGDNIRTLFNVWDHTTDQGLHGALLFLDIRKAFDSVNWDFVNAACSSFGFGKDLSRWIRTFYVDAKCLIINNNHMSTPFRVERGVRQGEPCSPSLFSLAIESLSLAIKRNKSVKGIPIVSQDIKISLFADDALLFLDGSEKSFRAAFAEATEFGNHSGCKINIAKSNAMYIGKKQPNSPHQLSSQGLSWPNTFIKYLGVKIPVNRNKTNLFTINFESIGKEIQAVTKPWLARSLSLLGRVTIIKALAIPKLLYKLSVLPVSLPKQFFKEIKRKLFTFLWGSNWERVGRKTLCSNIKEAGLEMIDLEAYAKSIRFSWIRKLLDTNHESHWKNIETKITSLNTMICVAASDLKLTHKEITKQTPLSTFWSSIELWRECVSQFWPQDKVYNCAIWLNKKVLFKRKPIAYENFIKSGILMYQQIIDNNSDYCSFTILCEKYTLTNNNQNHADYQRLIAAIPTTWETYTTDRPERKTAIDRLRKGISDNLPTAKNAYEYFVSPNKQKPTKQQNKWEVTLQRGPLNWSEIYKNLYDCTFETKLRSFQVKINLRAIVLNDKLHGFGIIETDVCTFCGVNKETIYHLFCECKHVQVYWESVSAWMDSVLCHKTIISNTVKLFGIHNDCLEKCVLNLMNCMLVVARFVIYKCRIQNLKPNIEMFIYAMNRSRANEKAVAIKHNKLLQYKLKWNANLR
>L1MA1_gag#LINE/L1 L1M1_5end_2055-3023 [Primates]
MPRHRRTSTSIKTIQENMTSPNELNKAPGTNPGETEICDLSDREFKIAVLRKLXEIQDNTEKEFRILSDKFNKEIEIIKKNQAEILELKNAIDILKNASESLNSRIDQAEERISELEDRLFENTQSEETKEKRIKKNEARLQDLENSLKRANLRVIGLKEEVEREIGVESLFKGIITENFPNLEKDINIQVQEGYRTPSRFNPKKTTSRHLIIKLPKVKDKERILKAAREKKQITYNGAPIRLAADFSVETLQARREWHDIFKVLKEKNFYPRIVYPVKISFKHEGEIKTFPDKQKLRDFINTRPVLQEMLKGVLQSERKGH
>L1MA1_pol#LINE/L1 3485-7312  [Primates]
MAGVSPYLSIITLNVNGLNSPIKRHRLAEWMKKQDPLICCLQETHFTYKDTHRLKIKGWKKIFHANGNQKRAGVAILISDKIDFKTKTIRRDKEGHYIMIKGSIQQEDITILNIYAPNTGAPRYIKXILLELKREIGPNTIIAGDFNTPLSALDRSSRQKINKETSDLICTIDQMDLIDIYRTFHPRAAEYTFFSSAHGSFSRIDHMLGHKTSLKTFKKIEIISSIFSDHNGIKLEINNKRNFGNYTNTWKLNNMLLNDQWVNEEIKKEIEKFLETNDNGNTTYQNLWDTAKAVLRGKFIAISAYIKKEEKLQINNLTMHLKELEKQEQTKPKISRRKEIIKIRAEINEIEMKKTIQKINETKSWFFEKLNKIDKPLARLTKKKREKIQINKIRNEKGDITTDTAEIQRIISGYYEQLYANKLENLEEMDKFLDTYNLPRLNQEEIQNLNRPITSNEIEAVIKSLPVKKSPGPDGFTAEFYQTFKEELIPILLKLFRKIEEEGILPNSFYEASITLIPKPDKDTSKKENYRPISLMNIDAKILNKILANRIQQYIRKIIHHDQVGFIPGMQGWFNICKSINVIHHINRMKDKNHMIISIDAEKAFDKIQHPFMIKTLKKLGIEGTYLNIIKAIYDRPTASIILNGEKLKAFPLRSGTRQGCPLSPLLFNIVLEVLARAIRQEKDIKGIQIGKEEVKLSLFADDMILYLEKPKDSTRKLLELINKFSKVAGYKINIQKSVAFLYANSEQCEKEIKKVIPFTIATHKIKYLGINLTKEVKDLYNENYKTLMKEIEEDTKKWKNIPCSWIGRINIVKMSILPKAIYRFNAIPIKIPMTFFTEIEKTILKFIWNHKRPRIAKAILSKKNKTGGITLPDFKLYYRAIVTKTAWYWHKNRHIDQWNRIENPETNPHTYSELIFDKGAKNIHWGKDSLFNKWCWENWISICRRMKLDPYLSPYTKIKSKWIKDLNLRPQTMKLLQENIGENLQDIGLGKDFLSNTPQAQATKAKMDKWDHIKLKSFCTAKDTINKVKRQPTEWEKIFANYPSDKGLITRIYKELKQLYRKKSNNPIKKWAKDLNRHFSKEDIQMANRHMKRCSTSLIIREMQIKTTMRYHLTPVKMAYIQKTGNNKCWRGCGEKGTLVHCWWECKLVQPLWRTVWRFLKKLKIELPYDPAIPLLGIYPKERKSVYRRDICTPMFVAALFTIAKIWKQPKCPSTDEWIKKMWYIYTMEYYSAIKKNEIQSFATTWMELEIIMLSEISQAQKDKHRMFSLICGI
>L1MA6_gag#LINE/L1  L1M2_5end_1641-2645 [Eutheria]
MRRYQCKDTRNMKKQGNMTPPKEHNNSPATDSNEKEIYEIPEKEFKIMILKKLSEIQENTEKQYKEIRKTIQDMNEKFTKEIDIIKKNQTEILELKNSXNEIKNTFESFNNRLDQAEERISELEDRSFEITQSDKNKKKRIKKNEQSLRDIWDTIKRPNIRILGVPEGEEKAKGIENLFNEIIAENFPSLARDLDIQIQEAQRSPNRYNPKRSSPXHIIVKLSKVKDKERILKTAREKHLVTYKGTPIRLTADFSAETLQARREWDDIFKVLKEKKNCQPRILYPAKLSFINEGEIKSFPDKQKLREFITTRPALQEMLKGVLHLEAKGRYLPS
>L1MA6_pol#LINE/L1 2812-6636  [Eutheria]
MAVVSPYLSILTLNVNGLNSPIKRHRVAEWIKKQDPTICCLQETHFTYKDTHRLKVKGWKKIFHANGNQKRAGVAILISDKIDFKSKTVKRDKEGHYIMIKGSIQQEDITIVNIYAPNTGAPKYIKQILIDLKGEIDCNTIIVGDFNTPLSAMDRSSRQKINKETSDLNCTLDQMDLTDIYRTFHPTAAEYTFFSTAHGTFSRIDHMLGHKTSLNKFKKIEIISSIFSDHNGIKLEINNRRNFGNXTNTWKLNNMLLNNQWVNEEIKKEIKKFLETNENGNTTYQNLWDTAKAVLRGKFIAINAYIKKVERSQINNLTLHLKELEKQEQTKPKISRRKEIIKIRAEINEIETKKTIQKINETKSWFFEKINKIDKPLARLRKKREKTQINKIRDEKGDITTDTTEIQRIIRDYYEQLYANKLENLEEMDKFLDTYNLPRLNHEEIENLNRPIMSNEIESVIKSLPSKKSPGPDGFTAEFYQTFKEELIPILLKLFQKIEEEGILPNSFYEASITLIPKPDKDTTKKENYRPISLMNIDAKILNKILANRIQQHIKKIIHHDQVGFIPGMQGWFNIRKSINVIHHINRMKDKNHMIISIDAEKAFDKIQHPFMIKTLNKLGIEGTYLNTIKAIYDKPTANIILNGEKLKAFPLRSGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQIGKEEVKLSLFADDMILYIENPKDSTKKLLELINEFSKVAGYKINIQKSVAFLYANSELSEKEIKKTIPFTIATKKIKYLGINLTKEVKDLYXENYKTLMKEIEEDTNKWKDIPCSWIGRINIVKMSILPKAIYRFNAIPIKIPMTFFTEIEKTILKFVWNHKRPRIAKAILSKKNKAGGITLPDFKIYYKAIVTKTAWYWHKNRHIDQWNRIESPEINPRIYSQLIFDKGAKNTQWGKDSLFNKWCWENWISTCRRMKLDPYLSPYTKINSKWIKDLNVRPETMKLLEENIGEMLHDIGLGKDFLDKTSKAQATKAKIDKWDYIKLKSFCTAKETINRVKRQPTEWEKIFANYASDKGLISRIYKELKQLNSKKTNNPIXKWAKDLNRHFSKEDIQMANRYMKKCSTSLIIREMQIKTTMRYHLTPVRMAIIKKTKDNKCWRGCGEKGTLTHCWWECKLVQPLWKTVWRFLKKLKIELPYDPAIPLLGIYPKEMKSVCRRDICTPMFIAALFTIAKIWNQPKCPSTDEWIKKMWYIYTMEYYSAIKKNEILSFATTWMNLEDIMLSEISQAQKDKYRMISLICGI
>L1MB1_pol#LINE/L1  [Eutheria]
MAIVSPSLSIITLNVNGLNSPIKRHRVAEWIKKXDPTICCLQXTHFRFKDTHRLKVKGWKKIFHANGNQKRAGVAILISXKIDFKSKTVXRDKEGHYIMIKGSIXQENITIINIYAPNIRAPKYIKQTLTELKGEIDSNTIIVGDFNTPLSIMDRTSRQKINKETEDLNNTIDQMDLTDIYRTFHPTAAEYTFFSXAHRTFSRIDHMLGHKTSLNKFKKIEIIPSIFSDHNGMKLEINSRRKTGKFTNMWKLNNTLLNNQWVKEEIKREIRKYLETNENKNTTYQNLWDAAKAVLRGKFIVINAYIKKEERSQINNLTLHLKELEKEEQTKPKVSRRKEIIKIRAEINKIEXRKTIEKINETKSWFFEKXNKIDKPLARLRKKEKTQINKIRNERGDITTDATEIKRIIRDYYEQLYANKLDNLEEMDKFLETYNLPRLNHEEIENLNRPITSKEIESVIKNLPTKKSPGPDGFTGEFYQTFKEELMPILLKLFQKIEEEGTLPNSFYEASITLIPKPDKDTTRKENYRPISLMNIDAKILNKILANRIQQHIKRIIHHDQVGFIPGMQGWFNIRKSINVIHHINRMKDKNHMIISIDAEKAFDKIQHPFMIKTLNKLGIEGXYLNIIKAIYEKPTANIILNGEKLKAFPLRSGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQIGKEEVKLSLFADDMILYXENPKDSTKXLLELINKFSKVAGYKINIQKSVAFLYTNNKXSEKEIKKTIPFTIASKRIKYLGINLTKEVKDLYTENYKTLMKEIKEDTNKWKDIPCSWIGRINIVKMSILPKAIYRFNAIPIKIPMAFFTEIEKTILKFIWNHKRPQIAKTILRKKNKAGGITLPDFKTYYKAIVIKTVWYWHKDRHIDQWNRIESPEINPRIYGQLIFDKGAKNTQWGKDSLFNKWCWENWISTCRRMKLDPYLTPYTKINSKWIKDLNVRPETVKLLEENIGEKLHDIGLGNDFLDMTPKAQATKAKIDKWDYIKLKSFCTAKETINRVKRQPTEWEKIFANHISDKGLISKIYKELLQLNNKKTNNLIKKWAKDLNRHFSKEDIQMANRYMKRCSTSLIIREMQIKTTMRYHLAPVRMAIIKKTKNNKCWRGCGEIGTLVHCWWECKMVQPLWKTVWRFLKKLKIELPYDPAIPLLGIYPKELKSGSRRDIXTPMFIAALFTIAKMWKQPKCPSTDEWIKKMWYIHTMEYYSALKKKEILPYATTWMNLEDIMLSEISQSQKDKYCMIPLI
>L1MB8_gag#LINE/L1 L1M4c_5end_782-1765 [Eutheria]
MSSFQQQQKITRHTKKQESMAHSKEKNKPTETVPEKDLMADLLDKDFKTTVLKMLKELKEDVEKVKKTMYEQNGNINKETENLKRNQKEILELKSTITEMKNSLEGFKGRFEQAEERISKLEDRTTEIIESEEQKEKRLKKSEQSLRDLWDTIKRTNIRIVGVPEGEEREKGAERIFEEIMAENFPNLMKDMNINIQEAQRTPSRMNSKRPTPRHIIIKLSKAKDKERILKAAREKRLITYKGSSIRLSADFSSETLEARRQWADIFKVLKEKNCQPRILYPAKLSFKSEGEIKTFPDKQKLREFVTTRPALQEMLKGVLQGEMKGH
>L1MB8_pol#LINE/L1 2346-6164  [Eutheria]
MADVNPTXSVITLNVNGLNTPIKRQRLAEWIKKHDPTICCLQETHFRFKDTNRLKVKGWKXIYHANSNQKRAGVAILISDKIDFKTKIVTRDKEGHFIMIKGSIHQEDITIINIYAPNNRAPKYMKQKLTELKGEIDNSTIIVGDFNTPLSIMDRTTRQKINKEIEDLNNTINQLDLTDIYRTLHPTTAEYTFFSSAHGTFSRIDHMLGHKTSLNKFKRTEIIQSMFSDHNGMKLEINNRRKFGKFTNMWKLNNTLLNNQWVKEEITREIRKYFEMNENENTTYQNLWDAAKAVLRGKFIAVNAYIKKEERSQINNLTFHLKKLEKEEQTKPKASRRKEIIKIRAEINEIENRKTIEKINETKSWFFEKINKIDKPLARLTKKKREKTQITKIRNERGDITTDLTEIKRIIREYYEQLYANKLDNLDEMDKFLERHKLPKLTQEEIENLNRPITSKEIELVIKKLPTKKSPGPDGFTGEFYQTFKEELXPILHKLFQKIEEEGTLPNSFYEASITLIPKPDKDITRKENYRPISLMNIDAKILNKILANRIQQHIKRIIHHDQVGFIPGMQGWFNIRKSINVIHHINRIKDKNHMIISIDAEKAFDKIQHXFMIKTLNKLGIEGNFLNLIKGIYEKPTANIVLNGERLXAFPLRSGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKXIQIGKEEVKLSLFADDMILYIENPKESTKKLLELINEFSKVAGYKINIQKSIVFLYTXNEQSENEIKKTIPFTIASKRIKYLGINLTKEVQXLYTENXKTLLKEIKEDLNKWKDIPCSWIGRLNIVKMAILPKLIYRFNAIPIKIPAAFFAEIDKLILKFIWKCKGPRIAKTILKKKNKVGGLTLPNFKTYYKATVIKTVWYWHKDRHIDQWNRIESPEINPYIYGQLIFDKGAKTIQWGKNSLFNKWCWDNWIXTCKRMKLDPYLTPYTKINSKWIXDLNVRAKTIKLLEENIGVNLRDLGLGNGFLDMTPKAQATKEKIDKLDFIKIKNFCASKDTIKKVKRQPTEWEKIFANHISDKGLVSRIYKELLQLNNKKTNNPIXKWAKDLNRHFSKEDIQMANKHMKRCSTSLVIREMQIKTTMRYHFTPTRMAVIKKXDNNKCWRGCGEIGALIHCWWECKMVQPLWKTVWQFLKKLNIELPYDPAIPLLGIYPREMKTXVHTKTCTRMFIAALFIIAKKWKQPKCPSTDEWINKMWHIHTMEYYSAIKRNEVLIHATTWMNLENITLSERSQSQKTTYCMIPFI
>L1MC1_gag#LINE/L1 L1MCa_5end_778-1745 via tfasty with L1MA6_gag, 4 frameshifts.  [Eutheria]
MSGYQEKITRHTKRQKTQFEETEQASEPDSDMAGMLELSDREFKTTMINMLRALMXKVDSMQEQMGNVSREMEILRKNQKEMLEIKNTVTEMKNAFDGLISRLDTAEERISELEDXSIETSKTEKQREKRLKKNEQNIQELWDNYKRCNIRVMGIPEGEEREKGTEEIFEAIMTENFPQLMSDTKPQIQEAQRTPSRINPKKKQNKTTPRHIIFKLQKIKDKEKILKEARGKKHLTYRGAKIRITSDFSSETMQARREWSEIFKVLREKKPHQPRILYPAKLSFKSEGEIKTFSDKQKLREFVASRPALQEMLKEVLQREGK
>L1MC1_pol#LINE/L1 2285-6103  [Eutheria]
MVDINPTISIITLNVNGLNAPIKRQRLSEWIKKQDPTICCLQETHFKYKDTYRLKVNGWRKIYHANTNQKKAGVAILISDRADFRARKVIRDKEGHYIMIKGSILQEDITILNVYAPNNRASKYVRQKLIELQGEIDESTIIVGDFNTPLSEMDRSSRQKISKDIVELNSTINQLDIIDIYRLLHPTTAEYTFFSSSHGTFTKIDHILGHKTHLNKFKRIEIIQCLLSDHNGIKLEINNRKIAGKSQNTWRLNNTLLNNTWVKEEISREIQKYFELNENENTTYQNLWDAAKAVLRGKFIALNAYIRKEERSKINXLSFHLRKLEKEEQIKSKVSRRKEIIKIRAEINEIENRKSIEKINKTKSWFFEKINKIDKPLARLTKKKRERTQITNIRNERGDITTDPMDIKRIIKEYYEQLYAHKFDNLDEMDQFLERHNLPKLTQEEIDNLNRPISIKEIESIINNLPKQKAPGPDGFTGEFYQTFKEEIIPILYNLFQKIEAEGILPNSFYEASITLIPKPDKDITRKENYRPISLMNIDAKILNKILANRIQQCIKRIIHHDQVGFIPGMQGWFNIRKSINVIHHINRLKKKNHMIISIDAEKAFDKIQHPFMIKTLSKLGIEGNFLNLIKNIYKKPTANIILNGEKLEAFPLRSGTRQGCPLSPLLFNIVLEVLANAIRQEKEIKGIQIGKEEIKLSLFADDMIVYVENPKESTKKLLELISDYSKVAGYKVNIQKSITFLYTSNEQVEFEIKNTXPFTLAPPKMKYLGINLTKYVQDLYEENYKTLMKEIKEELNKWRDIPCSWIGRLNIVKMSVLPNLIYRFNAIPIKIPASYFVDIDKLILKFIWRGKRPRIANTILKEKNKVGGLTLPDFKTYYKATVIKTVWYWRKNRQIDQWNRIESPEIDPHKYSQLIFDKGAKAIQWSKDSLFNKWCWNNWTSTCKKMNLDTDLTPFTKINSKWITDLNVKCKTIKLLEDNIGENLDDLGXGDDFLDTTPKARSMKEXIDKLDFIKIKNFCSAKDXVKRMKRQATDWEKIFAKDTSDKGLLSKIYKELLKLNNKKTNNPIXKWAKDLNRHLTKEDIQMANKHMKRCSTSYVIREMQIKTTMRYHYTPIRMAKIQNTDNTKCWRGCGATGTLIHCWWECKMVQPLWKTVWQFLTKLNILLPYDPAIALLGIYPKELKTYVHTKTCTRMFIAALFIIAKTWKQPRCPSVGEWINKLWYIQTMEYYSALKRNELSSHEKTWRKLKCILLSERSQSEKATYCMIPTI
>L1MC4_gag#LINE/L1 L1MC4_5end_730-1740 via tfasty with L1MC1_gag, 1 stopcodon.  [Eutheria]
MNKNRXNPYKAITKKKHQKMRIKTFQLMKIPPQKKXKNNHEAEENCXTTLQTELNXLKQAFXDIKKNYLESEIQKLRTEMDKKIKEEMKXELIELRKEXEEKDKIISEMKTKLQXAQGRIDSNENLIRGIEERQEKNNKRIKKMRXRKEVKRVREKVXEMEDRQRRNNXYIIGVPEEEKQNNGTELIFKTIIQENFPEIKEKDLNLHIERAHWVPGKINPERSTPRHILVKLLDFKDKEKILKASRQKDQITYKXKRIRLASDFSKTTYKARQQWSSIFKKLKERKCEPRILYPAKLSFKYQGYRKTVXNMQELREXCTHEPFLRNLLEDKLHPTKR
>L1MD1_gag#LINE/L1  L1MDa_5end_1056-2021 via tfasty with L1MA6_gag, 4 frameshifts and 1 stopcodon.  [Eutheria]
MSRFQXKITRHTKNQEDLKLNEKRQSIDANTEMTEMLELSDKDFKAAXIKMLQXAITNTLKQMKNRKSQQRNRKFSKEIEDIKKNQMEILELKNTITEIKSSVDGLNSRMEGTEERISELEDRTIEITQSEQQRENRLIKKNEQSLRDLWDYNKRSNIYVIGVPEGEEKEGGAEKVLEEIMAENFPNLARDINLQIQEAERTPNRINPKKSTPRHIIIKLLKTKDKERKILKAXREKRHLTYRGKTIRMTADFSSETMEARRKWHNIFQVLKEKNCQPRILYPAKISFRNEGEIKTFSDEGKLREFVASRPTLKEWLKEVL
>L1MD1_pol#LINE/L1 2501-6319  [Eutheria]
MADLSPNISIITLNVNGLNTPIKRQRLAEWIKKHDPTICCLQETHFKYNDIGRLKVKGWKKIYHANINQRKAGVAILISDKVDFRAKKITRDREGHYIMIKGSIHQEDIAILNVYAPNNRAAKYVKQKLIELKGEIDKSTIIVGDFNTPLSTIDRTTRQKISKDIEELNNTINQQDLIDIYRTLHPTTAEYTFFSSAHGTYTKIDHILGHKTNLNKFKRIEIIQSVFSDHNGIKLEINNRKITGKSPNTWKLNNTLLNNPWVKEEVSREIKKYIELNENENTTYQNLWDTAKAVLRGKFIALNAYIRKEEKSQINNLSSHLKNLEKEEQNKPKASRRKEIIKIRAEINEIENRKTIEKINETKSWFFEKINKIDKPLARLTKKKREKTQITNIRNETGDITTDPADIKRIIREYYEQLYTHKFDNLDEMDQFLEKHKLPQLTQYEIDNLNSPITIKEIEFIILKLPKKKSPGPDGFTGEFYQTFKEELTPILHNLFQKIEEEGTLPNSFYEASITLIPKPDKDSTKKENYRPISLMNIDAKILNKILANRIQQYIKRIIHHDQVGFIPGMQGWFNIRKSINVIHHINRLKKKNHMIISIDAEKAFDKIQHPFMIKTLRKXGIEGNFLNLIKSIYKKPTANIILNGERLNAFPLRSGTRQGCPLSPLLFNIVLEVLASAIRQEKEIKGIQIGKEEIKLSLFADDMIVYVENPKESTKKLLELISEFSKVTGYKINIQKSIVFLYTSNEHVDTEIKNTIPFTIAQKKMKYLGVNLTKHVQDLYAENYKMLMKEIKEDLNKWRDIPCSWIGRLNIVKMSILPKLIYRFNAIPIKIPARFFVDIDKIILKFIWKGKGTRIAKTILKKKNKVGGISLPDFKTYYIATVIKTVWYWRRDRHIDQWNRIENPEIDPHKYAQLIFDKGAKAIQWRKDSLFNKWCWSNWTSIGKKMNLDLSLTPYTKINSKWITDLNVKRKTIKLLEKNIGENLRDLGLGKEFLDLTPKARSIKGKIDKLDFIKIKNFCSAKDPVKRMKRQATXWEKIFANHISDKGLVSRIYKELSKLNSKKTNNPIRKWAKDMKRHFTEEDIQMANKHMKRCSTSLAIREMQIKTTMRYHYTPIRMAKIKNSDNTKCWRGCGETGSLIHCWWECKMVQPLWKTVWQFLKKLNMQLPYDPAIALLGIYPREMKTYVHTKTCTRMFIAALFVIAKNWKQPRCPSTGEWLNKLWYIHTMEYYSAIKRNELLIHATTWMNLQRIMLSEKSQSQKVTYCMIPFI
>L1ME3_gag#LINE/L1 L1MEc_5end_805-1805 via tfasty with L1MD1_gag, 7 frameshifts and 6 stopcodons. (not too pretty) [Eutheria]
MSGIQXKITRHAKKQENIITHNEEKNQSIETDPELTQNCXNXNYRQGXIKTVIITVFYMFKKLSRDMEDIKKTQIKLLERLKTTMSEMKNTLDGINSRLXXIAEEKISELEDIAIETIQNETQREKKIXKIKNEKSISELWDNFKXPNIYVIGVPKGEEKRGKREKIFEEIMAKNFPNLMKTINPQIQEAQQTPSTRNMKKTTPRHIIIKLLKTSDKEKNLKSSQREKRHITYRGTKIRMTADFLSETMQARRQWSNIFKVLKEKKTXYLLSLPRILXXRKNCQPRILYPAKISFKNKGEIKTFSDIQKLKEFITSRSAXLQKMLKEVLQAEGK
>L1ME3_pol#LINE/L1 2285-6103  [Eutheria]
MAGVSPYLSIITLNVNGLNSPIKRHRLAEWMKKQDPLICCLQETHFTYKDTHRLKIKGWKKIFHANGNQKRAGVAILISDKIDFKTKTIRRDKEGHYIMIKGSIQQEDITILNIYAPNXXASKYVKQKLTEXKGEIDKSTIIVGDFNTPLSVTDRTSRQKISKNIEDLNNXINKLDLXDXYRTLHXTTAEXTFFSSAHGTFTKTDHXLGHKASLNKFQRIEIIQSMFSDHSGIKLEINNKKITRKSPNVWKLSNILLNNPWVKEEITMEIRKYFELNDNENTTYQNLWDAAKAVLRGKFIALNAYIRKEERLKINDXSXXLKKLEKEXQIKPKESRRKEIIKIRAEINEIENKXTIEKINKAKXWFFEKINKIDKPLARLIKKKREKTQITNIRNEKGDITTDPTDIKRIIRGYYEQLYANKFENLDEXDKFLEKYNLPKLTQEEIENLNSPIXIKEIESVIKNLSTKKTPGPDGFTGEFXQTFKEEIIPILHKLFQRIEKEGTLPNSFYEASITLIPKPDKDITRKENYRPXSLMNIDAKILNKILANRIQQYIKRIIHHDQVGFIPGMQGWFNIQKSINVIHHINRIKEKNHMIISIDAEKAFDKIQHPFMIKTLSKLGIEGNFLNLIKSIYKKPTANIILNGEILXAFPLRLGXRQECPLSPLLFNIVLEVLASAIRQEKEIKGIRIGKEEIKLSLFADDMIVYIENPKESTDKLLELISEFSKVTGYKVNIQKSIVFLYTSNKQLENEIXKTIPFTIASKNIKYLGINLIKXVQDLYTENYKTLLREIKEDLNKWRDIPCSWIGRLNIVKMSILPKLIYRFNAIPXKIPAGFFVEIDKLILKFIWKCKGPRIAKTILKKKNKVGGLTLPDIKTYYKATVIKTVWYWRKDRQIDQWNRIESPETDPHIYGHLIXDKGXXAXQWGKNSLFNKWCWXNWISIWKKMXLDPYLTPYTKINSRWIIDLNVKGKTIKLLEXNIGEYLYDLGVGKDFLNRTQKALTIXEKIDKXDYIKIKNFCSSKDTIKRVKRQATEWEXIFAIHIXDKELISRIYKELLQINKKKTDNPIEKWAKDLNRHFTKEDIQMANKHMKRCSTSLVIREMQIKTTMRYHFTPTRMAKIKKTDXTKCWRGCGATGTLIHCWWECKLVQPLWKIVWQFLLKLNIRLPYDPAIPLLGIYPREMXTYVHQKTCTRMFIAALFIIAKNWKQPKCPSTGEWINKLWYIHTMEYYTAIKRNELLIHATTWMNLXDIMLSERSQTQKSTYCMIPFI
>L1ME_gag#LINE/L1 L1ME_5end 601-1593 [Eutheria]
MSRIQSKITRHTKNQENXTNSQGKRQSTXANPEMTQMLELSDKDFKAAIITMLXEVKXNXLEMNGKIEXLSREIETIKKNQMEILELKNTISEXKNSLDGLNSRMEMTEERVSELEDRSIEIIQSEEQREKKLKKNEQSLRDLWDNIKRSNXRXIGVPEGEEKEXXAEKIFEEIMAENFPNLVKDINLQIQEAQRTPNRINXKKTTPRHIIIKLLKTKDKEKILKAAREKRHITYRGTTIRMXADFSSEXMEARRQWNNIFKVLKEKNCQPRILYPAKISFRNEGEIKTFSDKXKLREFVASRPALXEMLKEVLQAEGK
>L1Mdo1_pol#LINE/L1 1-3807  [Monodelphis]
MPANPQMTIITLNVNGMNSPIKRRQIADWIRTQNPTICCLQETHMRRVDTHKVRIKGWSKTFWASTDRKKAGVAIMISDKAKAKIDLIKRDREGKYILLKGSIDNEEISLINMYAPNGIASKFLIEKLGELKEEIDSKTILVGDLNQPLSNLDKSNQKINKKEVKEVNEILEKLELIDIWRKINRDKKEYTFFSAPHGTFTKIDHTLGHRNMALKCRKAEIINAAFSDHKAIKILIGKGTWRAKSKINWKLNNMILQNRXVREEIIETINNFVEENDNGETSFQTLWDAAKAVLRGKFISLSAYINKLGRTEIKELEMQIKKLENEQIKNPQKKTKLEILKIKGEINKIESDRTIELINKTRSWYFEKTDKIDKVLVNLIKKRKEERQINSIKDEKGDLTSNEEEIKAIIKNYFAQLYGNKYTNLGDMDEYLQKYKLPRLTEEEIDFLNNPISEKEIQQAIKELPKKKSPGPDGFTSEFYQTFKEQLTPILYKLFDIISKEGVLPNSFYDTNMVLIPKPGRPKTEKENYRPISLMNIDAKILNRILAKRLQQVIRRVIHHDQVGFIPGMQGWFNIRKTIHIIDHINKQTNKNHMIISIDAEKAFDKIQHPFLLKTLESIGIEGSFLKIINSIYLKPSTNIICNGDKLNPFPLRSGVKQGCPLSPLLFDIVLETLAVAIREEKEIEGIKIGKEETKLSLFADDMMVYLKNPRDSTKKLIEIINNFSKVAGYKINPHKSSAFLYXSNTAQQQELEREIPFKITLDKIKYLGIYLPRQTQELYEHNYKTLSTQLKLDLNNWKNINCSWVGRANIIKMTILPKLIYLFSAIPMELPKXFFTDLEKTITKFIWKNKRSRISREIMKKNTKEGGLAVPDLRLYYKAAVIKTIWYWLRDRKEDQWNRLGASDLSKTVYDKPKDPSFWDKNPLFHKNCWENWRTVWERLGLDQHLTPYTKINSKWVNDLNIKKETIRKLGEHRIVYMSDLWEGKDFKTKQDLERVTKCKINNLEYIKLKSFCTNKTNVTKIRRVATNWETIFIKTSDKGLITQIYKELNQLYKKSSHSPIDKWARDMNRQFSAKEIKTINKHMKKCSTSLIIREMQIKTTLRYHLTPSRLANMTAMESNECWRGCGKVGTLIHCWWSCELIQPFWRAIWNYAQRVIKDCLPFDPAIALLGLYPKEIIRKKTCTRIFIAALFVVAKNWKTRGCPSIGEWLNKLWYMLVMEYYCAKRNNKVEEFHGDWNNLQEVMQSERSRTRKTLYTETDTLWYNRR
>L1Mdo2_pol#LINE/L1 1-3807  [Monodelphis]
MPGSPQVTVITLNVNGMNSPIKRRRIAEWIRIQNPTICCLQETHMRRVDTHKVRIKGWSKTFWASTDRKKAGVAIMISDKAKAKIDLIKRDREGNYILLKGTLDNEEISLINMYAPNNIAPKFLMEKLGELKEEIDSKTILVGDLNQPLSNLDKSNQKINKKEVKEVNEILEKLELIDIWRKINRDKKEYTFFSAPHGTFTKIDHTLGHRNMAHKCRKAEIINAAFSDHKAIKIMISNGTWKTKSKTNWKLNNMILQNRLVREEIIETINNFIEENDNGETSFQTFWDAAKAVIRGKFISLSAYINKLGRAEINQLEMQIKKLESDQIKNPQQKTKLEILKIKGEINKIESDRTIDLINKTRSWYFEKTNKIDKVLVNLIKKRKEEKQINSIKDEKGDITSDEEEIKAIIKNYFAQLYGNKYTNLGDMDEYIQKYKLPRLTEEEIEFLNNPISENEIQQAIKELPKKKSPGPDGFTSEFYQTFREQLIPILYKLFDIISKEGVLPNSFYDTNMVLIPKPGRSKTEKENYRPISLMNIDAKILNRILAKRLQQVIRRVIHHDQVGFIPGMQGWFNIRKTIHIIDHINKQTNKNHMIISIDAEKAFDKIQHPFLLKTLESIGIEGSFLKIINSIYLKPSANIICNGDKLDAFPIRSGVKQGCPLSPLLFDIVLETLAVAIREEKEIEGIKIGKEETKLSLFADDMMVYLKNPRDSTKKLIEIINNFSKVAGYKINPHKSSAFLYISNTAQQQKLEREIPFKITLDKIKYLGIYLPRQTQELYEHNYKTLSTQLKLDLSNWKNINCSWIGRANIIKMTILPKLIYLFSAIPIELPKNFFTDLEKTITKFIWNNKRSRISREIMKKNTNXGGLAVPDLKLYYKAAVIKTIWYWLRDRKEDQWNRLGASDLSKTVYDKPKDPSFWDKNPLFDKNCWENWKTVWERLGXDQHLTPYTKINSKWVNDLNIKKETISKLGKHRIVYMSDLWEGKDFKTKQDIERITKCKINNFDYIKLKSFCTNKTNVTKIRRETTNWEKIFIETSDKGLITQIYKELNQLYKKSSHSPIDKWARDMDRQFSDKEIKTINKHMKKCSKSLIIREMQIKTTLRYHLTPSRLANMTAKESNECWRGCGKVGTLIHCWWSCELIQPFWRAIWNYAQRAIKECLPFDPAIALLGLYPKEIMEKKTCTRIFIAALFVVAKNWKTRGCPSIGEWLNKLWYMLVMEYYCAKRNNKVEEFHGDWNNLQEVMQSERSRTRRTLYTETNTLWYNRT
>L1Opos_pol#LINE/L1 1-3837  [Monodelphis]
MEGNTQLVIITVNVNGMNSPIKWKRIAEWIKNQNPTICCLQETHLRQGDTHRVKVKGWSRIYYASAKVKKKAGVAIMISDKAKAKXDLIKRDKEGNYILIKGTIDNEVISILNIYAPNGIASKFLKEKLNEFQEEIDSKTILVGDLNLPLSELDKSNQKINKKEVKEVNEILEKLDLIDLWRKLNGNRKEYTFFSAVHGTYTKIDHVXGHKNFTTKCRKAEIXNASFSDHNAIKIIXNKGPWKDKLKINWKLNNLILKXGWVKEQIIETINNFIKENDNEETTYQNLWDTAKAVLRGKFISLNAYINKIEKKQINELGMQLKKLEKEQIXNPQLXTKLEILKIKGEINKIESKRTIELINKTRSWFYEKTNKIDKXLVNLIXKRKEENQITSIKNEKGEFTTNEEEIKAIIRSYFAQLYANKSDNLSEMDEYLQKYKLPRLTKEEIEYLNNPISEKEIEQAINELPKKKSPGPDGFTSEFYQTFKEQLIPILYKLFGKIGKEGILPNSFYDTNMVLIPKPGRAKTEKENYRPXSLMNIDAKILNKILARRLQQYITRIXHYDQVGFIPGMQGWFNIRKTISIIDHINNXTNRNHMIISIDAEKAFDKIQHPFLLKTLENXGINGXFLKMINSIYLKPSASIICNGDKLEAFPIRSGVKQGCPLSPLLFNIVLEMLAXAIREEKEIEGIRIGNEETKLSLFADDMMVYLENPRESTKKLIEIINNFSKVAGYKINPHKSSAFLYTTNKVQQQEIEREIPFKITXDNIKYLGVYLPRQTQELYEHNYKTLFTQIKSDLNNWKNINCSWVGRANIIKMTILPKLIYLFSAIPIKLPKNYFIELEKIITKFIWKNKRPRISRELMKKNVKEGGLAVPDLKLYYKAAIIKTIWYWLRNRVVDQWNRLGTQHTVVNDHSNLVFDKPKDPSFWKKNSLFDKNCWENWKTVWQKLGIDQHLTPYTKIKSKWIHDLEIKGDTINKLGEHGIVYLSDLWIREEFMXKQDIENITRCKMDNFDYIKLKXFCTNKTNATKIRRETTNWGKIFIASXSDKGLISQIYRELSQIYKNTKHSPIDKWSKDMNRQFSDEEIKTIXSHMKKCSKSLLIREMQIKTTLRYHLTPIRLANMTKKENDKCWRGCGKIGTLIHCWWSCELIQPFWRAIWNHAQRAIKLCIPFDPAIPLLGLYPKEIKDRGKGPTCTKIFIAALFVVAKNWKLKGCPSIGEWLNKLWYMIVMEYYCAIRNDEQDDXKKTWKDLYEVMQSEVSRTRRTLYTVTAIMYDDQL
>L1PA2_gag#LINE/L1 1030-2046  [Primates]
MGKKQSRKTGNSKNQSASPSPKERSSSPATEQSWTENDFDELREEGFRRSNYSELQEEIRTNGKEVKNFEKKLDEWITRITNAEKSLKDLMELKTKARELRDECRSLSSRCDQLEERVSVTEDEMNEMKREEKFREKRIKRNEQSLQEIWDYVKRPNLRLIGVPESDGENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRVTHKGKPIRLTADLSAETLQARREWGPIFNILKEKNFRPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEALNMERNNQYQPLQKHAKL
>L1PA2_pol#LINE/L1 2110-5937  [Primates]
MTGSNSHITILTLNVNGLNAPIKRHRLANWIKSQDPSVCRIQETHLTCRDTHRLEIKGWRKIYQANGKQKKAGVAILVSDKTDFKPTKIKRDKEGHYIMVKGSIQQEELTILNIYAPNTGAPRFIKQVLSDLQRDLDSHTIIMGDFNTPLSTLDRSTRQKVNKDTQELNSALHQADLIDIYRTLHPKSTEYTFFSAPHHTYSKIDHIVGSKALLSKCKRTEIITNCLSDHSAIKLELRIKKLTQNRSTTWKLNNLLLNDYWVHNEMKAEIKMFFETNENKDTTYQNLWDTFKAVCRGKFIALNAHKRKQERSKIDTLTSQLKELEKQEQTHSKASRRQEITKIRAELKEIETQKTLQKINESRSWFFEKINKIDRPLARLIKKKREKNQIDAIKNDTGDITTDPTEIQTTVREYYKHLYANKLENLEEMDKFLDTYTLPRLNQEEVESLNRPITGSEIEAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHINRTKDKNHMIISIDAEKAFDKIQQRFMLKTLNKLGIDGTYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYTNNRQTESQIMSELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLNEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRAHIAKSILSQKNKAGGITLPDFKLYYKATVTKTAWYWYQNRDIDQWNRTEPSEIMPHIYNYPIFDKPEKNKQWGKDSLFNKWCWENWLAICRKLKLDPFLTPYTKINSRWIKDLNVRPKTIKTLEENLGNTIQDIGMGKDFMSKTPKAMATKAKIDKRDLIKLKSFCTAKETTIRVNRQPTKWEKIFATYSSDKGLISRIYNELKQIYKKKTNNPIKKWAKDMNRHFSKEDIYAAKKHMKKCSSSLAIREMQIKTTMRYHLTPVRMAIIKKSGNNRCWRGCGEIGTLLHCWWDCKLVQPLWKSVWRFLRDLELEIPFDPAIPLLGIYPNDYKSCCYKDTCTRMFIAALFTIAKTWNQPKCPTMIDWIKKMWHIYTMEYYAAIKNDEFMSFVGTWMKLEIIILSKLSQEQKTKHRIFSLIGGN
>L1PA10_gag#LINE/L1 L1PA10_5end_1206-2246 via tfasty with L1PA2_gag, 1 stopcodon.  [Primates]
MRKNQRKNAENSKSQSASSPPNDRNTSPARAQNWAEAEMDELTEVGFRRWVITNFAELKEHVLTQCKEAKNHDKTLQELLTRITSLERNINDLMELKNTTRELHNATTSINSRIDQAEERISELEDYLAEIRQADKIREKRMKRNEQNLRELWDYVKRPNLRLIGVPERDGENGTKLENILQDIIQENFPNLARQANIQIQEIQRTPVRYSMRRSTPRHIIIRFSKVEMKEKMLRAAREKGQVTYKGKPIRLTADLSAETLQARRDWGPIFNILKEKNFQPRISYPAKLSFISEGEIKSFSDKQMLREFVTTRPALQELLKEALNMERKNRYQPLQKHTEVQRPMTL
>L1PA10_pol#LINE/L1 2499-6329  [Primates]
MMTGSNSHITILTLNVNGLNAPIKRHRMASWIKSQDPSVCCIQETHLTCKDTHRLKIKGWRKIYQANGKQKKAGVAILVSDKTDFKPTKIKKDKEGHYIMVKGSIQQEELTILNIYAPNTGAPRFIKQVLRDLQRDLDSHTIIVGDFNTPLSILDRSSRQKINKDIQDLNSALDQVDLIDIYRTLHPKTTEYTFFSAPHGTYSKIDHIIGSKTLLSKCKRTEIITNSLSDHSAIKLELKIKKLTQNHTTTWKLNNLLLNDSWVNNEIKAEIKKFFETNENKETTYQNLWDAAKAVLRGKFIALNAHIKKLERSQIDTLTSQLKELENQEQTNPKASRRQEITKIRAELKEIETRKTLQKINESRSWFFEKINKIDRPLARLIKKKREKNQIDTIKNDKGDITTDPTEIQTTIREYYKHLYANKLENLEEMDKFLDTYTLPRLNQEEVESLNRPITSSEIEAVINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQTIEKEGLLPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIHHINRTKDKNHMIISIDAEKAFDKIQHPFMLKTLNKLGIXGTYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQIGREEVKLSLFADDMILYLENPIVSAQKLLKLISNFSKVSGYKINVQKSQAFLYTNNRQAESQIMNELPFTIATKRIKYLGIQLTREVKDLFKENYKPLLKEIREDTNKWKNIPCSWIGRINIVKMAILPKVIYRFNAIPIKLPLTFFTELEKTTLKFIWNQKRARIAKTILSKKNKAGGITLPDFKLYYKATVTKTAWYWYKNRHIDQWNRIEXSEIRPHIYNHLIFDKPDKNKQWGKDSLFNKWCWENWLAICRKLKLDPFLTPYTKINSRWIKDLNVKPKTIKTLEENLGNTIQDIGTGKDFMMKTPKAIATKAKIDKWDLIKLKSFCTAKETIIRVNRQPTEWEKIFAIYPSDKGLISRIYKELKQIYKKKTNNPIKKWAKDMNRHFSKEDIYAANKHMKKSSTSLIIREMQIKTTMRYHLTPVRMAIIKKSRNNRCWRGCGEIGTLLHCWWECKLVQPLWKTVWRFLKDLEPEIPFDPAIPLLGIYPKEYKSFYYKDTCTRMFIAALFTIAKTWNQPKCPSMIDWIKKMWYIYTMEYYAAIKRNEIMSFAGTWMELEAIILSKLTQEQKTKHRMFSLISGS
>L1PA12_gag#LINE/L1 3022-4056 [Primates]
MRKNQRKNSSNSNGQSVLCPPNDRTSSPTRVLNQAELAEMTEIEFRIWIGMKIIEIQENGKTQSKETKNHNKMIQELXDEIASIKKNLTDLIELKNTLQEFHNAITSINSRIDQAEERISELEDWLSEIRQSDKNKEKRMKRNEQNLREIWDYVKRPNLRIIGIPERDGEKANNLENIFQDIVHENFPNLAREANSQIQEIQRTPARFYTRRSSPRHIIIRFSKVEMKERMLKAAREKGQVTYKGNPIRLTADLSAETLQARRDWGPIFNILKEKNLQPRISYPAKLSFLSEGEIRSFSDKQMLREFVTTRPALQEILKGALNIERKDRYQPIQKHTxVHRPVTL
>L1PA15_gag#LINE/L1 L1PA15-16_5end_1738-2740 via tfasty with L1PA10_gag, 1 frameshift and 2 stopcodons (latter replaced with arginines as in other subfamilies). [Primates]
MRRNQRKNSGTMKNLNVVTPPKDHTSSPAMVPNQNGNSEMTDKEFKAWIARKLNEIQDKVENQHKETSKAIQEMKEEINILKRNQSELLELKNSLKEFQNTIESFINRLDQAEERISELEDRSFELTQSDKNKEKRILKNEQSLREIWDYVKRPNLRIIGIPEREGEKVNNLENIFEGIIQENFPNLAREVDIQIQEIQRTPARYYTKRTSPRHIVTRLSKVNAKEKILKAAREKGQITYKGNPIRLTADFSAETLQARRDWGPIFSILKEKKFQPRISYPAKLSFISEGEIKSFPDKQALREFVTTRPALQEILKGVLNMETKERYLLPQKHT
>L1PA16_gag#LINE/L1 L1P4a_5end_1304-2371 via tfasty with L1PA2_gag, 3 stopcodons.  [Primates]
MKPTDYTQLTPQLKEHQPSQMRKNQRKNSGNSKSQSVPLPPNEPTSSPAMVLNQTEMTEMTDIEFRIWMARKLIEIQEKVETQSKESKXSSKMIQELKDEIAILRKNQTELLELKNSLQEFHNTIGSINSRIDQAEERISELEDRFFESTQSDKNKEKRILKNEQNLREIWDYVKRPNLRLIGIPEREGERISNLENIFEDIVHENFPNLAREVDMQIQEIQRTPARYYTRRPSPRHIVIRFTKVNAKEKILKAAREKGQVTYRGNPIRLAADLSAETLQARRDWGPIFSILKEKKFQPRISYPAKLSFISEGEIKSFSDKQMLREFISTRPALQEVLKGVLNMESKEXHLLPQKH
>L1PA16_pol#LINE/L1 2813-6640  [Primates]
MIGSKPHISILTLNVNGLNAPLKRHRVASWIKKQDPSVCCLQETHLTRNDTHRLKVKGWRKIYHANGKQKRAGVAILISDKTDFKPTTVKKDKEGHYIMIKGSIQQEDLTILNIYAPNIGAPRFIKQVLLDLRKDLDSHTIIVGDFNTPLTALDRSSRQKTNKEILDLNSTLDQLDLIDIYRILHPSTTEYTFFSSAHGTYSKIDHMLSHKASLNKFKKIEIIPTILSDHSGIKIEINTKKISQNHTITWKLNNLLLNDFWVNNEIKAEIKKXFEINENRDTTYQNLWDAAKAVLRGKFIALNAYLKKLERSQINDLTSHLEELEKQEQTNPKASRRKEITKIRAELNEIETQKSIQRINETKSWFFERINKINRPLARLTKKKREKIQISTIRNDKGDITTDPTEIQKILRDYYEHLYAHKLENLEEMDKFLETHNLPRLNQEEIETLNRPISSSEIESVIKNLPTKKSPGPDGFTAEFYQTYKEELVPILLKLFQKIEEEGLLPNSFYEASITLIPKPGKDTTKKENYRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIHHINRIKNKNHMIISIDAEKAFDKIQHPFMIKTLXKLGIEGTYLKIIRAIYDKPTANIILNGQKLEAFPLRTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQIGKEEVKLSLFADDMILYLENPKDSAKRLLELINDFSKVSGYKINVQKSVAFLYTNNVQAESQIKNAIPFTIATKKIKYLGIHLTKEVKDLYKENYKTLLKEIIDDTNKWKNIPCSWIGRINIVKMAILPKAIYRFNAIPIKLPMSFFTELEKTILKFIWNQKRAQIAKAILSKKNKAGGITLPDFKLYYKATVTKTAWYWYKNRHIDQWNRIENPEIKPHTYSHLIFDKVDKNKQWGKDSLFNKWCWDSWLAICRRMKLDPYLSPYTKINSRWIKDLNVRPQTIRILEENLGNTILDIGLGKEFMTKSSKAIATKTKIDKWDLIKLKSFCTAKETINRVNRQPTEWEKIFANYASDKGLISRIYKELKQFNKQKTNNPIKKWAKDMNRHFSKEDIQAANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIIKKSKNNRCWRGCGEKGTLIHCWWECKLVQPLWKAVWRFLKELKTELPFDPAIPLLGIYPKENKSFYQKDTCTRMFIAALFTIAKTWNQPRCPSTVDWIKKMWYIYTMEYYAAIKKNEIMSFAATWMQLEAIILSELTQEQKTKYRMFSLISGS
>L1PB1_gag#LINE/L1 L1PBa_5end_1660-2681 via tfasty with L1PA10_gag, 2 frameshifts and 3 stopcodons. [Primates]
MRRNQKNNSGNMTKQGSLTPPKDHTSSPAMDPNQEEISELPEKEFRRLIIKLLKEAPEKGENQLKEIKKNDTGYEWKNLQRNRXHKXKTNXSQLLEMKDTLREMQNALESLSNRIEQVEERTSELKDKAFKLTQSNKDKEKRIXKNEQSLQEVWDYVKXPNLRIIGVPEEEEKSKSLENIFEGIIEENFPGLARDLDIQIQEAQRAQRTPGKFITKRSSPRHIVIRLSKVKIKTKERILRAVRQKHQVTYKGKPIRLTADFSAETLQARRDWGPIFSLLKQNNYQPRILYPAKLSFINEGKIQSFSDKQMLREFTTTKPALQELLKGALNLETNPQNTPK
>L1PB1_pol#LINE/L1 2509-6336  [Primates]
MNGIVPHISILTLNVNGLNAPLKRYRXAEWIRIHQPTICCLQETHLTHKDSHKLKVKGWKKTFHANGHQKRAGVAILISDKTNFKATAVKKDKEGHYIMIKGLVQQENITILNIYAPNTGAPKFIKQLLXDLRNEIDSNTIIVGDFNTPLTALDRSSRQKVNKETMDLNYTLEQMDLTDXYRTFHPTTAEYTFYSXAHGTFSKIDHMIGHKTSLNKFKKIEIISSTLSDHSGIKLEINSKRNLQNHANTWKLNNLLLNDHWVXNEIKMEIKKFFELNDNSDTTYQNLWDTAKAVLRGKFIALNAYIKKSERAQTDNLRSHLKELEKQEQTKPKPSRRKEITKIRAELNEIETNKKIQKINETKSWFFEKINKIDRPLARLTKKRREKIQISSIRNETGDITTDTTEIQKIIQGYYEHLYAHKLENLEEMDKFLEXYNPPSLNQEEXXTLNRPITSSEIEMVIXKLPTKKSPGPDGFTAEFYQTFKEELVPILLTLFHKIEKEGTLPKSFYEASITLIPKPGKDITKKENYRPISLMNIDAKILNKILANRIQQHIKKIIHHDQVGFIPGMQGWFNIRKSINVIHHINRIKNKNHMIISIDAEKAFDKIQHPFMIKTLSKIGIXGTYLNVIKAIYDKPTANXILNGEKLKAFPLRTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQIGKEEVKLSLFADDMIVYLENPKDSSRKLLELIXEFSKVSGYKINVHKSVALLYTNSDQAENQIKNSTPFTIAAKKIKYLGIYLTKEVKDLYKENYKTLLKEIIDDTNKWKHIPCSWMGRINIVKMTILPKAIYKFNAIPIKIPPSFFTELEKTILKFIWNQKRARIAKARLSKKNKSGGITLPDFKLYYKAIVTKTAWYWYKNRHIDQWNRIENPEINPNTYSQLIFDKANKNIKWGKDTLFNKWCWDNWXATCRRMKLDPHLSPYTKINSRWIKDLNLRPETIKILEDNIGKTLLDIGLGKDFMTKNPKANATKTKINXWDLIKLKSFCTAKGTVSRVNRQPTEWEKIFTIYTSDKGLISRIYXELKQISKKKTNNPIKKWAKDMNRQFSKEDIQMANKHMKKCSTSLMIREMQIKTTMRYHLTPARMAIIKKSKNNRCWRGCGEKGTLLHCWWECKLVQPLWKTVWRFLKELKVELPFDPAIPLLGIYPEEKKSLYEKDTCTRMFIAAQFAIAKIWNQPKCPSINEWIKKLWYIYTMEYYSAIKRNEIMAFAATWMGLETIILSEVTQEWKTKHRMFSLISGS
>L1SU_SP_pol#LINE/L1 1297-4968 [Strongylocentrotus purpuratus]
MAVKLSFMTLNVRGIRDRLKRMNIFEWCKTKKNSIIFLQETYSTVEIEERWKQDWGGPMFFSHGSNHSRGVLILFSNHLDFEEKKIKVDEEGRYIIFKGEIQRVKMLLVNVYFPTRDKETLQIEFLKKLDESIFDQCDRDYLVLLGGDFNSILDGKLDYVGSKTPVKSRVIDLIKEFLNKYDLEDIWRKKNPNVKQFTFRQNWPVVQSRLDYWFIPCSVEKLVGTCEILTSITPDHSGVRLEFNDLVDKFVFGKSYWKFNSSLCMDKDFVEEMNKEIQELKVEWSLQILNKLVFWDFLKMKMREFIITYSRKKAKARRVEIELLEKQIKDLEGELVVGPTKYIVDCIEEKRDKLNKLYDFSRQGIKIRSRAPWFEDGENNTQYFEQFLKSNKRKSVIREVYKENGETTRDKEEILKEIKLFYKDLYSLRADINQNDPFFFNDISKLNEDNKEICEGKLTKDECLKVLKEMKLNKTPGNDGLTVEFYYTFWPALGDLLVEVLNETYERGELTASQKQGVITLIEKEAKDTLHIKNYRPITLLNVDYKIVSKVLAKRMKEVLNEIIHHDQVGYIKDRNIGEAVRLIDDMLFYSMHYGEQGKGFLCAVDFEKAFDSVSHRYLFQILKLFGFGDSFCSWVKLLYKGISSCVMNGGHSTGYFEIERGVRQGDPLSPYLFLVAIEILAHAVRRDNGIKGITFGKSEIRQVLYADDMTIFLKDIDSVRRLQYIFESFEKISGLKVNKTKTHFMWMGEDENKPDGPLFGNLVKEIHILGVSYSLDRSLKDDLNYKEILSKIKKLLVWWKQRDLTIMGKIHLLKTYALSKLNYISSLVIVPHWVYKEVAKISFEFIWRGKDRIKRAIMYQDYDFGGLRMINFEMSVKIQRIMWIKRLLYGEKSLGWKLFFDHCLQFVGGRFIFLCDYDLNKIKLVLDIPPYYMEMLQAWQETSNLRYLEGYINPIIFNNQNICINGKSIFDRYLFERGIVQLNHLVEKGHVKPVKYFMNLGMKGNNLLMIIDIYDAIPRLWKDDSGLIEFLEVDLISFNTYFHISSKKIQFVDVGSRTIYDYFIKALQRTYDLQVRDGQNDYDFIDKELKEIFVRPRITILIRKQREFQFKLLHGAIYTNEHLHRFGFVGDNLCSFCKQEIETYKHLFLSCGSVQRLWQALIQLFELDEIKDLEWRDIFVGLVGSSYRIKMCNTIIFMVKYVTFMSRSGGASTNFRKDEKKHF
>L1VL1_gag#LINE/L1 L1VL1_5end_727-1128 (fragment) [Mus]
MAGGKHKNRSNRNQGYLASSEPNSPTIASPGYTITPEKQDMDLKSLLMMMMEDFKKEIQENTGKQLEAFKEETQKSLRELQENTTKQVMELNKTIQDLKMEVETIKKTQRETTLEIETLGKKSGTIDASISNRI
>L1VL4_gag#LINE/L1  L1VL4_5end_432-953 [Muridae]
MARGKGKNISNRNQGYLASSEPSSPTTASPGYPNTPEKQDSDLKSHLMMMIEDFKKDINNSLKEIQENTGKQVEALKEETQKSLKELQENTTKQVKELNKTIQDLKMEIETIKKSQRETTLEIENLGKRSGVIDASITNRIQEIEERISGAEDTIENIDTTVKENAKCKKLLTQNIQEIQDTMRRPNLRIIGIEESEDSQLKGPVNIFNKIIEENFPNLKKEMPINIQEAYRTPNRLDQKRNSSRHIIVKTPNAQNKERILKAVREKGQVTYKGRPIRITPDFSPETMKARRSWADVIQTLREHKCQPRLLYPAKLSITIDGETKIFHDKNQIYTISFHKSSPTKDNRWKTPTQGGKLHPRKSKKVIFFQQTQKKIATQT
>L1_Canid2_gag#LINE/L1 L1_Canid2_5end_1693-2586 1 stopcodon [Canidae]
MTRRKNSPQKREQEAVLTARDLISMDISKMSELEFRITIIKILAGLEKSIEDTRESLSGEIKELKSNQVEXKKAINEMQXKMEALTARINEAEERISDIEDKMMENKEAEKKRDKQLLDHEGRIREISDTIKRNNIRIIGIPEEEERERGAEGILEQIIAENFPNLGKETGIQVQEAQRTPLKINKNRSTPRHIIVKLANLRDKEKILKAARDKRSVTYKGRNIRLAADLSTETWQARKDWHDIFRVLNEKNMQPRILYPARMSFKIEGEIKSFQDKQKLKEFVITKPALQEILKGIL
>L1_Canid_gag#LINE/L1 L1_Canid_1367-2260 1 stopcodon [Canidae]
MTRWRNSPQKKEQEVVLTARDLINTDISKMSELEFKTMIIKILAGLEKSIEDTRESLTVEIKELKSSQAEIKNAXTEMQSQVEAIKTRMNEAEEXISDIEDKXMENKEAEKKRERKLLDHEGRLRELSDSIKRNNIRIIGVPEDEEWEKGAEGLFEQIIAENFPNLGKETGIQVQEAQRTPLKINKNRSTPRHIIVKLANYKDKEKILKAARDKRSLTYKGRHIRLAADLSTETWQARKDWHDIFNVLNGKNMQPRILYPARLSFRIEGEIKSFQDKQKLKEFVNTKPALQEILKGTL
>L1_Canid_pol#LINE/L1 L1_Canid_5end_2345-6169 via tfasty with L1MA6_pol, 2 frameshifts and 2 stopcodons.  [Canidae]
MALNSYLSIITLNVNGLNAPIKRHRVSEWIKKKQDPSICCLQETHFRPKDTSRLKVRGWRTIYHANGHQKKAGVAILISDKLDFKPKTVIRDEEGHYIIIKGSIQQEDLTIVNIYAPNLGAAKYINQLITXLKKLIDNNTIIVGDFNTPLTAMDRSSKQKINKETRALNDTLDQMDLTDIFRAFHPKAAEYTFFSSAHGTFSRIDHILGHKSGLNRYKKIEIIPCIFSDHNAMKLEVNHKKKFGRTTNTWRLKNILLKNEWVNQEIKEEFXKYMEANENENTTVQNLWDAAKAVLRGKYIAIQAFLKKQEKSQIHNLTLHLKELEKEQQIKPKSSRRREIIKIRAEINDIEIKKKTVEQINETRSWFFERINKIDKPLARLIKKKRERTQINKIMNERGEITTNTEEIRIIREYYEQLYANKLGNLEEMDXFLETYKLPKLKQEEIENLNRPITSKEIESVIKNLPTNKSPGPDGFPGEFYQTFKEELIPILLKLFQKIEMEGKLPNSFYEASITLIPKPDKDPTKKENYRPISLMNMDAKILTKILANXIQQYIKRIIHHDQVGFIPGLQGWFNIHKSINVIHHINKRKDKNHMILSIDAEKAFDKIQHPFLIKTLHNVGIEGTYLNIIKAIYERPTANIILNGEKLRAFPLRSGTXQGCPLSPLLFNIVLEVLASAIRQQKEIKGIQIGKEEVKLSLFADDMILYVENPKDSTKKLLELIQEFSKVAGYKINAQKXVAFLYTNNEAAEKEIKESIPFTIAPKTIRYLGINLTKEVKDLYSENYRTLMKEIEEDTKKWKNIPCSWIGRTNIVKMSMLPKAIYTFNAIPIKIPPAFFTELEQTILKFVWNQKRPRIAKXMLKKKTKAGGITIPDFKLYYKAVIIKTVWYWHKNRHIDQWNRIENPEMDPQLYGQLIFDKAGKNIQWKKDSLFNKWCWENWTATCRRMKLDHFLTPYTKINSKWMKDLNVRQESIKILEENTGSNLFDLGHSNFLLDTSPKARETKAKMNYWDFIKIKSFCTAKETVNKTKRQPTEWEKIFANDISDKGLVSKIYKELIKLNTQKTKNPVKKWAEDMNRHFSKEDIQMANRHMKKCSTSLGIREIQIKTTMRYHLTXVRMAKINNSGNNRCWRGCGERGTLLHCWWECKLVQPLWKTVWRFLKKLKIELPYDPAIALLGIYPKDTNIVIRRGTCTPMFIAAMSTIAKLWKEPRCPSTDEWIKKMWYIYTMEYYSAIKKNEILPFAMTWMELEGIMLSEISQSEKDKYHMISLICGI
>L1_Canis1_gag#LINE/L1 1171-2067 [Canis]
MTRRKTSPQKKESETVLSPTELQNLDYNSMSESQFRSTIIQLLVALEKSIKDSRDFMTAEFRANQAEIKNQLNEMQSKLEVLTTRVNEVEERVSDIEDKLMAKRETEEKRDKQLKDHEDRLREINDSLRKKNLRLIGVPEGAERDRGPEYVFEQIIAENFPNLGRETGIQIQEIERSPPKINKNRSTPRHLIVKLANSKDKEKILKAARDKKSLTFMGRSIRVTADLSTETWQARKGWQDIFRVLNEKNMQPRILYPARLSFKMEGEIKSFQDRQELKEYVTSKPALQEILRGTLKIPL
>L1_Canis1_pol#LINE/L1 2120-5697 [Canis]
MMTLNSYLSIVTLNVNGLNDPIKRRRVSDWIKKQDPSICCLQETHFRQKDTYSLKIKGWRTIYHSNGPQKKAGVAILISDKLKFTPKTVVRDEEGHYIILKGSIQQEDLTIXNXYAPNVGAAKYINQLITKVKTYLDNNTLILGDFNLALSTLDRSSKHNISKETRALNDTLDQMDFTDIYRTLHPNSTEYTFFSSAHGTFSRIDHILGHKSGLNRYQKIGIVPCIFSDHNALKLELNHNKKFGRTSNTWRLRTILLKDERVNQEIKEELKRFMETNENEDTTVQNLWDAAKAVLRGKYIAIQASIQKLERTQIQKLTLHIKELEKKQQIDPTPRRRRELIKIRAELNEIETRRTVEQINRTRSWFFERINKIDKPLASLIKKKREKTQINKIMNEKGEITTNTKEIQTILKTYYEQLYANKLGNVEEMDAFLESHKLPKLEQEEIENLNRPITREEIEAVIKNLPRHKSPGPDGFPGEFYQTFXEETIPILLKLFGKIERDGVLPNSFYEASITLIPKPDKDPTKKENYRPISLMNMDAKILNKILANRIQQYIKKIIHHDQVGFIPGTQGWFNTRKTINVIHHISKRKTKNHMILSLDAEKAFDKIQHPFLIKTLQSVGIEGTFLNILKAIYEKPTANIILNGEALGAFPLRSGTRQGCPLSPLLFNIVLEVLASAIRQQKDIKGIQIGKEEVKLSLFADDMILYIENPKASTPRLLELIQQFGSVAGYKINAQKSVAFLYTNNETEEREIKESIPFTIAPKSIRYLGINLTKEVKDLYPKNYRTLLKEIEEDTKRWKNIPCSWIGRINIVKMSMLPRAIYTFNAIPIKIPWTFFRELEQIILRFVWNQKRPRIARGILKKKTIAGGITMPDFRLYYKAVVIKTVWYWHKNRHIDQWNRIENPEVDPQLYGQLIFDKGGKTIHWKKDSLFNKWCWENWTSTCRRMKLDHSLXPYTKINSKWMKDLNVRQDSIKILEENTGNTLFELGHSNFLQDTSTKAKETKAKMNYWDFIKIRSFCTAKXTVNKTKRQPTEWEKIFANDVSDKGLVSKIYKELIKLNTKETNNPIMKWAKDMNRNLTEEDIDMANXHMRKCSASLAIREIQIKTTMRYHLTPVRMGKINKAGNHKCWRGCGERGTLLHCWWECELVQPLWKTVWRFLKELKIDLPYDPAIALLGIYPKDTDAMKRRDTC
>L1_Carn2_gag#LINE/L1 L1_Carn2_1144-2033 via tfasty with L1MA6_gag, 1 frameshift and 1 stopcodon. [Carnivora]
MPRRRNLSQMKEQDKATARDLSETDISNMPDGEFKATIIRILTGLEKRIEDISETLTTEIKELKKNQSEMKNAINEIGNRLDAMNSRLEEAEEXISDLEDKIMENNEAEQKRERRIMQHENRLRELSDSIKRNNIRIIGVPEEEERAKGAENLFEEIIAENFPNLGKETDIQIQEAQRTPIKINKSRPTPRHIVIKFAKYSDKEKILKAARQKKSLTYKGKPIRLAGDFSTETWQARREWHDIFKVLNGKNLQPRILYPARLSFRIEGEIKSFPDKQKLKEFVTTKPALQEILKGTL
>L1_Carn2_pol#LINE/L1 L1_Carn2_2119-5937 via tfasty with L1MA6_pol, 2 frameshifts.  [Carnivora]
MAINTYLSIITLNVNGLNAPIKRHRVSEWIKKQDPSICCLQETHFRPKDTCRLKVRGWRNIYHANGCQKKAGVAILISDKLDFKTKTVTRDKEGHYIIIKGTIQQEDITIVNIYAPNMGAPKYIKQLITNIKELIDNNTIIVGDFNTPLTSMDRSSKQKINKETMALNDTLDQMDLTDIFRTFHPKTAEYTFFSSAHGTFSRIDHILGHKTGLNKYKKIEVIPCTFSDHNAMKLEVNHRKKSGKTTNTWRLNNMLLNNEWVNQEIKEEIKKYMETNENENTMVQNLWDAAKAVLRGKYIAIQAYLKKQEKSQINNLTLHLKELEKEQQTKPKASRRKEIIKIRAEINDIETKKTIEQINETRSWFFEKINKIDKPLARLIKKKRERTQINKITNERGEITTNTTEIRIIREYYEKLYANKLDNLEEMDKFLETYKLPKLKQEEIENLNRLITSKEIESVIKKLPTNKSPGPDGFTGEFYQTFKEELIPILLKLFQKIEKEGKLPNSFYEASITLIPKPDKDXTKKENYRPISLMNMDAKILNKILANRIQQYIKKIIHHDQVGFIPGLQGWFNIRKSINVIHHINKRKDKNHMIISIDAEKAFDKVQHPFMIKTLNKVGLEGTYLNIIKAIYEKPTANIILNGEKLRAFPLWSGTRQGCPLSPLLFNIVLEVLATAIRQQKEIKGIQIGKEEXKLSLFADDMILYIENPKDSTKKLLELIHEFSKVAGYKINVQKSVAFLYTNNEAAEREIKESIPFTIAPKTIRYLGINLTKEVKDLYSENYKTLMKEIEDDTKKWKDIPCSWIGRTNIVKMSILPKAIYTFNAIPIKIPTAFFTELEQTILKFVWNHKRPRIAKATLKKKSKAGGITIPDFKLYYKAVVIKTVWYWHKNRHIDQWNRIENPEMNPQLYGQLIFDKAGKNIQWEKDSLFNKWCWENWTATCKRMKLDHFLTPYTKINSKWIKDLNVRPETIKILEENTGSNLFDIGHSNFFLDMSPEARETKAKINYWDFIKIKSFCTAKETINKTKRQPTEWEKIFANDISDKGLVSKIYKELIKLNTQKTNNPIKKWAEDMNRHFSKEDIQMANRHMKRCSTSXIIREMQIKTTMRYHLTPVRMAKINNTRNNRCWRGCGERGTLLHCWWECKLVQPLWKTVWRFLKKLKIELPYDPAIALLGIYPKNTKILIQRDTCTPMFIAALSTIAKLWKQPKCPSTDEWIKKMWYIYTMEYYSAIKKNEILPFATTWMELESIMLSEISQSEKDKYHMISLICGI
>L1_Carn3_gag#LINE/L1 1289-2168 via tfasty with L1_Fc_gag, 1 frameshift. [Carnivora]
MRRQRNLSQMKEQDKATARDLSETDISNMPDREFKAMIIRILTGLEKRVEDMSETLNTEIRNNIAEIKGSINEMRNTLDGMNSRMEEAEERISDLEDRVMESNQAEQKREKRIMQNENRLRELSDSIKRNNIRIIGVPEEEERKGAENLFEEIIAENFPNLGKETDIQIQEAQRTPIKINKSRPTPRHIVIKLAKYSDKEKILKAARQKKSVTYKGKPIRLAGDFSTETLQARREWHDIFKVLNGKNLQPRILYPARLSFRIEGEIKSFPDKQKLKEFMTTKPALQEILKGTL
>L1_Ele3_gag#LINE/L1 129-1198 via tfasty with L1-10_CQ_gag, 1 frameshift. [Aedes aegypti]
MRRENTFRIDYSSFPVKPAFEKVHGFCRTVLGLNKEDVKRLQCSRGEQCAFVKVGDLALAQKIVEEHDGRHEVEIDGKKHKLRITIEDGSVEVKVHDLPEDVTKEKIVEFLRAFGEVVSIHELTWGESYEFAGVPLGIWSARMLLHRNIDSWVTIDGQQAYVVYKGQVISCKHCKEQAHSGISCVQNKKLLVQKSYANVAKQSGNRPPPKKSSGVKPPSTKPVGPTAPSLTSSAAFPELPKPPSRTEQSAPVTKANSQSDKIDLTASPSPQQQRAHGSSSSHRSTQQATEATQPNVAVVDLFKKPIHALRSHSKNGNGNETDESSASTSSRRSRGRPPGKKPRREDDDDEQDEDSQP
>L1_Ele3_pol#LINE/L1 1201-4038  [Aedes aegypti]
MALTSYNIASINIGTITNPTKLAALRTFINSQSLDIVCLQEVENDQLSLPGFVVYTNVDHTRRGTAVALKEHIQVSHVEKSLDSRLIALRVHDTTICNLYAPSGSAQRAAREDFFNGTLAYYLRHPTQHVILAGDFNCVLRACDSSSPNTSPALKTAVQQLQLHDVWEKLRPRDAGFTYVCRNAQSRLDRIYVSSGLREHLRTAHTHVCSFTDHKALTLRLCLPQLGHEPGRGFWSLRPHLLTDENVAEFQTQWQYWTRQRRNYGSWIEWWISYAKPRIKTFFKRKSRIVFDEFHDAHQRLYAELRLAYDGYYQHPEMLPTINRLKGEMLALQRNFSHMFMRMNETHVAGEPVSIFQLGERRRRRTVITQLRTEENETVAEPAAIEANLLNFFSRLYTEEATAENNNDDGFTCERVIPPDDPLNQACTDEITTAEILSAIRXSAPRRSPGNDGIPREFYLRXFDVIHRELNLLLNEALAGNLPPAFVEGIIVLVKKKGGDNTARSYRPISLLNSDYKLLSRILKSRLECVMRAHHVLSDGQKCSNSERNIFQATLALKDRIASLRHHRRAGKLISFDLENAFDRVRHSFLFGTMCSLGFSRDLVALLARIASRSTSRLLINGRLSRPFEIQRSVRQGDPLSMHLFVLYLHPLVCRLEQACGNDLLVAYADDISVIVTSAGQIELMNGIFIRFEAVAGARLNLRKTVAIDVGFCEGNPINTQWLQTADVVKILGITFANSIRLMTTLNWNALVGKFAQQMWLHSLRMLTLHQKVIMLNTFGTSKLWYVSSVLPPLGVHTAKITSTMGAFLWRGMPARVPMMQLARSKEHGGLNLHLPALKAKSLAINRHLKEIDSLPYYKSLLFHDNPRPAISIDHPDLKIILSNYSHIPPLIQENPSADLIHRHFVSQTDLPKVERSHPTIDWPRAWRNISDKQLSSAERRSSTCW
>L1_Ele4_gag#LINE/L1 168-1406  [Aedes aegypti]
MAQVKPRENTFRVDLTNFPKRPSFEDLHLFVHNVLGLKLEQVVRLQMNHVQNCVHVKCATLKIAQDTVDLHNGKHEITINKTKVKVRLVMEDGGVEVKIHDLSENIRNDDIVAYLKQYGEVITLQEQMWGDIYTFKSRPSGVRVAKMILRRHIKSFVTIQGEQTLVTYRGQPQTCKHCMNAIHTGISCVENKKLIGQKTDLNARLNSDRQRTQGYAGVLSSPPPDQEALSMNFVDLNEHNRKAAAVSNTSTSTQSKEEIVVEMASDANEPQSSAGPASSDAASAEQHTENVDQPNDVELNKALTGASWAQLVNAESPNDVQMQLSDRPNGQSRDSSLLDEARGGSTKIVPTQVRTDISPTSVFKKPQDDNCGGSDYSMEISDNEGNAYQCSSEKEFTTVRKGRDRSKKQRVGK
>L1_Ele4_pol#LINE/L1 1417-4617  [Aedes aegypti]
MANRTSSYNIASINTNAISSNTKIQALRTFIRLTDLDIILLQEVEDPYLTIPGFNVITNVDSQKRGTAIALKSHMTCSNIQRSLDSRVITVTLEGSVKIVNIYAPSGTTNYASRENFFQNIVPFYLQSTTEHLVLGGDFNCVVSHKDATGTSNFSPALGNVLNSLHLKDTWDLLKPNQIQYSYIRPNCASRLDRLYISESLIEQLRTAEFYVTSFSDHKSYKIRCCLPNQGRNFGKGFWSIRAHVLTEDNMQEFEIKWNRWLRERRNFSSWMSWWVNCAKPKIRSFFRWKTNESFRTFHAENEVLYQRLRTAYDNLYQNPTGMTEINKIKGKMLLLQNQFSHSFERLNDKLISGEKLSTFQLADRIKRKKNSTITTITDNGRVLRNLDDIESHVFNYFNQLYATQNHQPSTNFPSNRTIDMNCEANNEAMNEITTEDIFFAIQSAAGRKSPGNDGIPKEFYVKAFDIIHRQLNLILNEALQGNLPLEFLEGVIVLCRKNSNHSSITAYRPITLLNCDYKLLARILKLRLEKIMINNRILNENQKCSNSGKNIFEAVLGIKDKIAEINCKRKVGKLISFDLDHAFDRVDQNYLLSIMREIRFNNDLIAILEKIMQNSRSKILINGHLSQNVPIQRSIRQGDPLSMHLFVIYLHPLIEKLCTICDNRLELVVAYADDISVIIVDDHKIGVVRKAFENFGLCSGAVLNLAKTIALNIGSNNDRSNMYEWLNIHDSVKILGITYFNSLKRTIDHNWTEIIRSTSRLMWLYKTRLLSLHQKIILLNTFITSKLWFAASILSIPNAILARITSQMGYFIWGRYPTRIAMDQLSLPFDKGGLNLQLPMHKCKALLINRFLRCKQNLPFANSFEELMSNPPHIQGIPALYPCLKVIAKEVPYLPEHIIEHLSAIELHKYYKSKLSTPKVMIEQSTVSWSKIWSNIRNKSLSPDEKSCYYLLVNGKIPHATSLYRQNRLQSPMCQICRGANEDLEHKFSVCIRVRHLWNHILPKLEIITGRRHKFRDFSLPELKNIEASAKRKALKLFIVYVKFIIEENVNLTTEALDFVLDYKLL
>L1_Ele5_gag#LINE/L1 171-1193  [Aedes aegypti]
MAAVRARENTFKVDLSNFPKRPSFEEIHSFVHETIGLSVDQVLRLQMNHAQNCAHVKCRDLKTAQDAVDHHNGRHELEVNKTKFKVRLMMDDGGVEVKIHDLSENVRNEDIAAFLKQYGEIISIKELVWGDNFAFKGVSSGVRVAKMILHRHIKSFVTIMGEESLISYRNQPQYCRHCTNPSHPGLTCVENKKLLGQKTDLNNRLKAVQKKTSYASVLDRSKVVASLMPEFVATNLNELNANARSSTSTAVVEERGASGVSPPAAPADDERMEEGEIQKNTSDDTDAATADAAAAAAAATVVENIAAAPVAGSSAVPLLPPLLPPLLPPLMPPLMPRLLML
>L1_Ele5_pol#LINE/L1 1597-4791  [Aedes aegypti]
MSRRDTLSYNIGSINTNTVSSDNKIAALRSFVRLLDFDIVLLQEVECVSLCIPGYNIIFNVDESRRGTAIALKSHIPFSNVQRSLNSRILTVKIGDSLTICNIYAHSGSQNYSARENLFKEQLPFYLQAASEHVILGGDFNCVISNKDATGTNNQSPALKQLVENMQLNDTWDCLKRNVIDYSFVRSNSASRIDRIYVSRSLVPHLHSSELFATSFSDHKAYKIRCGLPNLGKPFGRGYWSMRAHVLNEENLAEFEQKWTRWLREKRNFNSWMSWWTEYAKPKIRSFFRWKTNEAFREFHATNEMLYRQLRNAYDHLYQNPNGVAEVNKIKAKMLQVQSNFSKAYERLNDRYVCGEKVSSFQIGDRYRRKTTISSIRHEDRCITTGTEIENHVHDFFRNLYSEEQLHSFEYSPTNRIIPADSNSNNAMMHEITTTELFFAIKSSASRKSPGSDGIPKEFYLKAFEIIHPQLNLIINEALQGNVPENFVEGIVVLCKKKTNDQTIKAYRPISLLNYDYKLLSRILKERLEKVMVEQNLLNASQKCSNSDRTIFEAVHAIKDRIAELNCRRRHGKLISFDFDHAFDRVNHDFLKVVMRNIHLNGNFVQLLGKIMSSSKSRLLINGNLTPSFPIQRSVRQGDPLSMHLFVLYLHPLLEKLRAICNGPMDLVVAYADDISIIITDERKLAIIKQAFVNFGRCSGSLLNLNKTFTVNLGPHRDADDINWPMAKDSIKILGVTFFNSQKQLIDYNWADVIRKTSRLMWMYKARNLTLHQKIIVLNTFITSRLWFLASIISVPNHAVARITSHIGSFIWERFPTRVPIEQLTLPKNMGGLNLHLPMHKCKSLLVTRFLKEIRETPFASSLAQHLENPPNLAAIPALYPCLKSLSKVLPYIPRRIRENPDAALLHNHFREKLNKPKVMQENTNITWRRVWQNIRIKGLTSIEQSMYYLLVNGKIPHAKLLHRQNRVANPFCQLCPNTEEDLEHKFSSCPKTSALWNHLQSKLETTVGRRMTFTSLRFPELKNMNRTCRYQALKMFISYVKYVLDANDQLSVEALDFILNCVFV
>L1_Ele9_gag#LINE/L1 162-1331  [Aedes aegypti]
MNNRKIRENTFRVEFAKLPKKPTSEEVHKMVGLQLGITRSQLVCIQLSHTDECAFVKVTEQAIAQRVVDQYDNKLDYDVKGVKYKLRLRMADGCVDVRLHDLSENTTNEQIRRHMEVYGDVLSVQELLWSDKHHFPGLSSGIRLVRMVLREPIKSYITIDGESTLVTYPRQRQTCRHCGEYLHTGISCVQNKKLLAQKAGLNDRLKKASYAGAVRGNPAEAASTHQGNDTALISAQATNTSTQAPSVQEASGESVGLRTDVEIETDNTNNAAGESADDPSNRSNQAPDIGNIAQASTVPDEHGTDTASEYGSVEGSGPSHQSVPAQQPEPEAGPSSPGRVMQALLSITSNENEAQKGKHKQEDGSTSEDSSAFTVIGKQRGRGRSKKLKQ
>L1_Ele9_pol#LINE/L1 1362-4547  [Aedes aegypti]
MDSSSYIIGTVNINNITNKTKLEALHHFVRSQDVDILLLQEVENSSISIQGFNIIFNVDHTRRGTAIALKSHIKYTHVERSLDTRLIAVRIHDKVTIINIYAPSGTQNRASRESFFNTTLAYYLRRATEQVIIGGDFNAIIHPKDATGESNFSLSLKNTVQQAQIHDVWDRLRRRVTQHTYITHNSASRIDRIYVSTGLLEHLRNVDTHVCSFTNHHALTVRLCLPNLGRATGRGYWSIRPHVLTVENMDEFQLKWDYWTRRRHNYNSWMHWWLTFAKHKIRSFFRWKTKLKYDEFHDRYQYLYSQLREAYDRYFGDRSVLPTINLIKGKMLRLQSEFSKMFVHANESFVSGEPISAFQVGESRRKRTIINRLDLSDTEYIEDSTEIENHVYEHFREMYSQREETLNTEFHMVKCIPDDSRANAKCMDPISTEEIYFAIKGSASKKSAGPDGLPKEFYAKAFDIIHVHLNLILNEALRGEFTSDFTNGVIVLIKKKGTNNTLKSYRPISLLNVDFKLLSRILKTRVERVMTQHSVISSSQKCSNHKRNIYQATLSLKDRIAHLRENKRCGKLVSFDLESAFDRVNRTFLFDTMSSLGFNANLIELLSKIGTLSNSRILVNGHLSREFPVQRSVRQGDPIAMHLFAIYLQPLITKLEHCLNDPEDLLVVYADDVTIITTDINKIERARLLFEQFGNSSGACLNISKTISLDIGLISDNNRLIISWLSTTDRVKILGIVFTNSVRLMTNFNWDPLISKFAQQLWMHKMRLLSLHQKIVLLNSYVSSKIWYVASIVNINKSHIAKLTTLMNTFLWSGCRNRIPINQLALDIEEGGLKLQLPGFKCKALLISRHLKEIESMPFYSTYLENVGNPPNVRIIPSNCPCLQSIVQEAAYLPEQLESHPSPKKVMYAFLKKVTIPKIMQKHPEVCWKHVWCSIASKTLSSDERSLYYILINQKVMHRTLLVSMQLADTATCLHCSSADEDLEHLFSKCQRVRDSWRILTQMIEAVVGRAYSFSELLFSNIHTSREKKTKTMKLFINYVKFINNVNNTVDASAIKFHLENL
>L1_Ele12_gag#LINE/L1 151-1191  [Aedes aegypti]
MSVRRENTFRIDYANVPKKPSFEELHDFVGSALGLSYEQVVQLQPSRALGCAFVKVVDLELAQKVVAENDNKHVXEVDGKTYKLRITLEDGAVEVKLTDLSEDITNDQISEFLSAYGEVLSVTEQVWDSKYRFGGIPTGTRIVRMFVKRNIESYITIDGQTTNVVYFGQLHTCRYCNEYVHNGISCVQNKKLLVQKTYANVAKQAESNPSVAKPKATKQKTSFAKLFGPKPREVQQQEPSTKTTTVTEIFPSLPKTNVSCPTGVTPIGQILTRANLAEQRKNLMPPPVLPQNLSTTSRMSTRQASDGNETDISSASNSSKRRSGRPPGKKQRQNNEDDASEELAGQF
>L1_Ele12_pol#LINE/L1 1194-4361  [Aedes aegypti]
MAFNSYNIASININTITNTTKINALRTFLRMLEIDIAFLQEVENEQLLLPGYHVVCNVDHTRRGTAIALKEHVNFSNVEKSLDGRLIALRVQNTTLCNVYAPSGTAFRAERERFYHNTLAYYLRHSSEHILLAGDFNCVLRQCDATGHNPSPALHTTVQQLKLLDVWEKLRPSLPGYTYITHNSSSRLDRMYVSQSLRSHLRSTDIHVCSFSDHKALTARICLPYLGREPGRGFWSLRPHLLTAENVQEFQLRWQYWTRQRRNFGSWMQWWMSVAKPKIQSFFRWKSKTAFNDFHREHQRLYSNLRQAYDNYHQNPAVLPSINRIKAQMLTLQRNFTQTFVRINESYVAGEPLSTFQLGERRRRKTVITQLRDENNNPIDGSEAVERHMLEFYRALYATGEATEVMDEFACPRVIPENDPTSESCLSEITPADIYAAIKTSSPNKSPGGDSIPREFYLKTFDVIWRELTLVMNEALAGNFPADFVDGVIVLVKKKGNDQTAHSYRPISLLNCDYKIFSRILKQRLENVMRTHRLISSGQKCSNSGRNIFQATLSLKDRIAKLKHTKQRGLLASFDLRHAFDLVDRAFLARNMCSLGFNPAFVRLLTKIGELSSSRLLVNGYLSESFPIQRSVRQGDPISMHLFVIYIQPLIKRLEEIGGPDLVVAYADDISVISTSKVRLERMRETFHRFERVSGAKLSLTKSSSISVGYTDDMPLTVPWLKNEYSVRILGVTFVNSIRLMNKLNWDEIVGKFTRLVYLHIPRTLTLHQKIILLNTFITSKVWYIASVLSPSAAHKAKITATMGNFLWRGIQARVPMHQLARCREAGGLKLHLPAMKCRALLLNRHVRDIDSLPFYKSFLNQNNPNPPSDCPCLKLILNDFPLLPPLVQENPSANGIHSVYLEETDEPKISREHPEANWRKIWANISVRQLNSAQRSLLYLLINAKLEHRRLWFRMNRTDGENCLHCNCALETLEHKLSECVRVEAAWRLLQRNITTLLNGWRILTIDDLLRPQLDGVAKWKRTRILKMFQQYVFFIMECNDAIDLVALEIEIQHA
>L1_Ele13_gag#LINE/L1 148-1275 via tfasty with L1-3_CQ_gag, 1 stopcodon. [Aedes aegypti]
MSRRENTFRIDYSSVPKKPSYEDLHRFIANDLGLKKEEVLRIQCSRSAGCAFVKVCSLDVAQKVVSDHDNVHEVIVDDKPYKLRIRLEDGAVEVKLFDLSEDVSKQKIEEFLSAYGEVLKASEQIWESKYEFSGVPTGLWVVRMMVKVNIPSYVTIDGEVTYVQYFGQHQTCRHCEDFVHNGASCVQNKKLLLQKLSADKSNKQSYAKVAKQKPSTGAIVRPRSTNTTPSAVARQWTCPISTAAICSRQDVPGPIYLTSQSSPLSPxKMVSPSCSVAVANTSSQSSSASNSNTTKSLAPPTAVKQLVVELPPLPVGKFKKPTLQQQPIDNDENLTRSNRSDEEETDDSSSSKPRGRPPGKKARTHDGEGSRERKHR
>L1_Ele13_pol#LINE/L1 1278-4460  [Aedes aegypti]
MDHASYNIATININNISSPTKIDALRTFLRTMELDIIFLQEVENDQLTLPGYNVICNIDHMRRGTAIALKEYIQFSNVERSLDGRLIALRINNVTLCNVYAHSGTAFRAERERFFNSTISYYLRHNTPNVILAGDFNCVLRQCDATGSNDSPALKNTTQQLQLCDAWIKLCPRSSGHTYVTANSSSRLDRFYVSRGLQQHLRNSATHVCSFSDHQAVTLRICLPSLGRAPGRGFWTLRPHLLTQENIEELRYRWQFWTRERRNYASWMAWWLLCAKRKLKSFFRWKSKIAYDEFHCEHQRLYSQLRRAYDDFYGQPALLTTIHLLKAQMLALQRKFSKMFTRINESFIAGEDISSFHLGERTRKRTTITRLQSVDGQILHSSEDIEQHLYQYYSSLYTEEAVVRNGLNNFFQSERAIPINDATNEACMSAICTEEIITAIKTSASKKSPGPDGIPKEFYLRTFDVIHREINLILNEALSGQFPAEFVDGVIVLVKKKGGDETVRSYRPISLLNFDYKLLSRILKSRLETIMRTHDILSGAQKCANSSRNIFQATLSLKDRLAQVIKRKQRAKLISFDLDSAFDRVRRAFLHQTMHSLGFNGHLVDLLAQIADRASSRLLVNGHLSPPIDIQRSVRQGCPLSMHLFVIYLHPLVKELERICEEDLIVAYADDITIVCSSTQRVEMLRETFTRFELASGAKLNWRKTKAIDIGLIERDPLVVPWLQTGNTIKVLGVMFTNSVRLMVKLNWDAAINNFMHQIRCHSMRCLNLHQRVIIANIFIMSKIWYLSSILSPYAVHIAKITSTLGRFIWSGIPTRIPMTQLSRDRKDGGLKLQLPAMKCKALMVNRHVQDLECLPFYKTFVESSDPTQTIPADLPDLKVLCQQYQQLPIQIVQNPSADQIHRMYIDQTDKPKVEQEHPEVDWRRIWSSLHWRSFTAAERSNLFMLVNEKGDYRKLLYTMRRVDGENCVYCNEPIETLQHKYSECQRVNAAWEFLQRRITAHLGGWRRITFNELIRPSLDGIERNRRIHILKLFIHYISFVNNVNNVVDVNSLDFYLNVNC
>L1_Ele16_gag#LINE/L1 164-1201  [Aedes aegypti]
MKRRENTFCIDYSAVPKKPSYEELHAFIGTQLGLTRNDVQRIQCSRSTGCAFVKVNNLELAQKIVVEHDSKHAIEVDGQRYTLRLQMEDGAVAVRLYDLTEGTSREQISEYLSAYGDIISAEPEIWDDKYAFGGIETGVWIVKMMVTRNIPSYITIDGDSTYVAYYGQRHTCRHCGEYVHNGTSCVQNKKLLMQKLAVDPAARPTYANVTKTKAXSSINTKKPTPVGSPMLLRSAVSKSKDTTNLNHADKQPSDGLNVSASAATAAALDFTTTSNPHSMAAPTKTFKVPRLPNISGDRGLKNSKGNDDDTDDSTTSSSSRRSQGRPPGKKQKHYAGFEALGDNTDL
>L1_Ele16_pol#LINE/L1 1204-4386  [Aedes aegypti]
MDFLSYNIATVNINTITNATKLESLRTFIRTLELDIVFLQEVENENLQIPGFNVICNVDNMRRGTAIALRDYIHYTHVEKSLDGRLITARVNNVTLCCVYAHSGSQMRNDRERFFNDTLSYYLRHNTPHVILAGDFNCILRQCDGTSTNSSPSLQATVTQLQLCDVWVKLKSRLPGHTYITHHSASRLDRIYVSSDLVSHLRTVDTHCCAFSDHKAVSARICLPSLGRAPGRGFWTLRAHLLTAENIDEFQVRWQYWTRQRRNYRSWXQWWLFYAKPKIKSFYRWKSKSVYDAFHLEHQRLYAQLQQAYEGLQGNRCMLMDINRIKGKLLTLQRNFTQTFVRSNENFLPGETFSSFHLGERRRKKTTIARLSDDQGNVIEGQEEIENHVVAYFQTLYTAEQTDVLAEEEFVSDQAIPNDDAANDAIMNEINTAEIFAAIKTSAANKSPGPDGIPREFYLRSFEVIHREMNLVLNEALAGDFPTEFVDGVIVLVKKKGAGTDMHSYRPISLLNVDYKILSRILKLRLETVLRVHRVLNDSQKCGNSDKNIFQATLAIKDRIAHLIRRKQPGKLISFDLEQAFDRVSRRFLSRTMTSLGLNRQMITLLNAIAERSSSRILINGRLSQTFPIQRSVRQGDPLSMCLFVIYLHPLLRQLELVCDTDLIVAYADDITVIVTSTQKIERMRSLFLCFERAAGAKLNMMKTTSIDVGFIDQGTLVVPWLNTEVKIKILGVIFANSIRVMIKLNWDAVINNFARLTWLHSLRCLNLNQKVLVLNTFITSKIWYLASILPPYSVHTAKITATMGTFLWSRVPARVPMQQLARNREEGGLKLQLPAIKCKALLVNRHLQELNCMPFYKSFIDGNNTTPVTIPADLQCLRLLHHQLGYIPQNIQQNPCAGSILQFYLQATEPPKVEKNNPRHDWKRIWRNINDSKFSTKTRSELFMIVNEKIETRRLMNILGRTDGENCVHCGARVETVIHKYSECQRVTEAWALVQRRISTIAGGWRRFSFVDLLRPTLIGINRNNRIKILNLFSLYITFINLCNDVVDIDVLEFDIQCGI
>L1_Ele17_gag#LINE/L1 179-1306  [Aedes aegypti]
MNTRRIRENTFRVEFSNLPKKPTSEEVHAFVAQQLGVSRTQLVRLQLSHTDECAFVKVIDLNTAQRIVQTHDNQHDYEMKGVKYKIRIRMADGGVDVRLYDLSEHVSDEQVSRHMSAYGEVLSVSELLWSDKHHYAGMATGIRQVKMVLREPIKSYITIDGETTYVQYAKQRPTCRHCGEFMHTGISCVQNKKLLAQKVSVNDRLKRSSYAGAVRGASEGFSANETEEQRSVPLDNNAPFPQVQAQVEVPSTSNAAVFPPLPNKESPLAVPQMDVASGTDLVPTQQALEDEPSTEMNQETPQRTVSIGDISSMSTDESCNGNTLESSIVCNPNGELVVVTTEKPLTEGTGKHKNKNSNDTNPFILAKRGRGRSKKH
>L1_Ele17_pol#LINE/L1 1305-4502  [Aedes aegypti]
IKVDNHSYKIGTVNINNITNQTKTSALHNFIKTQDLDIIFIQEVENDKLDLPGYNIVCNVDNARRGTAIALKHQIKFSNVERSLNSRIIALRVHDTITLVNIYAHSGSQYRREREELFNFTLSYYLRHHTQHIILGGDFNSVIHSSDATGVSNFSLALKNMVQQLQLHDVVNVLNRENKQFTYITHNSASRIDRIYVSSGLLNNLRRADTHVCSFTNHKALTVRLALPNLGREKGRGYWSLRPCVLTTENIEELQLKWDYWTRQRRLYNSWIEWWVHFAKPKLKTFFRWKTNQMYAEYNRKYQILYTELREAYDRYLGDAGVLVTINRVKARMLKLQREFDTLFIRVNETRVSGEKLSTFQMGECRRKRTTIDSLDIDDNRTIERSEEIEEFIFDYFKNMYAGEEHEVNDEWMCDQTVSPNNEANASCMNDITTGEIYSAIKTSASRKAAGPDGITKDFFLKAFDVIHRHLNLALNEVLQGNIPEKFLDGIIVLIRKKNCGNTVKAFRPISLLNFDYKVLSRILKARLELILKESEVLSPSQKCSNFGKNIHQATLAIKDRIVQLRETKRKGKLISFDLDHAFDRVDHHFLFQSMRATGLNPALIELLSNVYARSRSKILVNGHLSPEIQIKCSVRQGDPISMHLFVLYLQPLVHKLDQVCDDRDDLVVVYADDITVVTTCIDKIERIKQLFISFGRCSGALLNLNKTYCIDIGHFRTSEPVNIDWLQTSEKMKILGITFCNSIRLMQKLNWDALVSKCAKNIWLHKMRDLNLQQKVVLLNTYITSKIWYVSSVLAMNKFHAAKLTSLMGSFLWAGIPIRVSMNQLALPYDRGGLKLQLPSIKSKALLINRHLKEATALPYYTSILMNAQNPPYLNSLPSNSPCLKLVYQEISYLPIQMRDNPTSNALHTYFLNQMDCPKVVSKYQNCNWVAVWRNIKSSQLSSLERSFYYILVNEKIAHAELLFRMQRVDSAICPNCLSGAESLAHKISTCPRIAESWRILQQELLKVYPDKTFNVEELIRPSMKINRVKKIKILKLFVNYVIYINEFNSNIDNTALRSLLGNII
>L1_Ele19_gag#LINE/L1 158-1285  [Aedes aegypti]
MNSSRRRENTFRIEFSNLPKKPSFENIHRFIAEALGLSKTQVVRVQINHYLWCAFVKCVDLATAQSIVQQHDNRHEIDISGKKYKLRILMEDGAVEVRLHDLSEDVSDESIMDYMSQYGQVLAIEELAWSDKYAFDEIPSGIRLVKMILKNPIKSYITVEGETTYVTYFGQKHTCRHCHEYIHSGIPCTQNKKLLVQKASVNERLNTNTRANPKTGSYANAVKTNAGPTFVLPSTSTSPPAPSPPTPSPPTTSPAPPLSLLQPAQADVADGAPAIDMECSSVQAASGSGPSLGSEMTTSPEQSFPSASSEVVIDDGPFKMPHVSNTSTDMNLDDEISDSSLASAGSTSRWTRSKKYKFDNIQPKKASHDRRSTKQP
>L1_Ele19_pol#LINE/L1 1298-4501  [Aedes aegypti]
MDFHSYNIGTININNITNENKLNALRHFVRQQDLDIIFLQEIENDSISIPGYNSVCNVDHTKRGTAILLKDYIKYSHVERSLDSRLISVRINENITLCNIYALSGSQHRASREAFFNNTVAFYLRNQAEYTIMSGDFNAVTHPKDSTGVSNYSMALKNTTQQLRLLDIWEILHGNRVEHTYICHNSASRIDRIYISSNLRPHVRTTTTHACSFTDHLALTARLCLPTMGREHGRGFWSLRTNVLTDETLEEFERKWSYWTRQRRHYSSWMLWWTAFVKPRLQSFFRKQSKDMSREFYTQHQHLYTQLREAYNNYHGNPAALVEINKIKSKMLMLQRKNTQMFQKINETCLAGEPLSVFQLGERIRKRTVINEIEVSNGNIIEDPLAIQEHIVNYFKDLYSETTRLEARETFTCERQIPANSNKNNTSMDPITTNEIFAALKGSAARKSPGSDGIPREFYLWAFDIIHRELNLLLNEALGGNILPEFVNGIIVLVRKKNTGNTIKSFRPISLLNYDYKLLARILKSRLDGIMTDHNIISNVQKCSNGKRTIFGATLALKDKIAQLRKHRRSGKLLSFDLDHAFDRVDRRFLFGTMDSLGFNAGLIHLLSSIAELSSSRLLINGHLSAPFTIQRSVRQGDPLSMHLFVIYLHPLLHRIQEVCNGQFDLVVAYADDVTMISTCVEKIERVKQLFLNFGRCSGSLLNLEKTSALDVGYITARNRVDVQWTQTTDSVKILGVIFTNSIRRMIILNWNTLIAKMAQQIWLHKMRFLSLHQKVLLMNTFISSKMWYISSILPIYKLHIAKITSLISSFLWQGQVVRVSMHQLALPKEKGGLNLHLPAFKCRSLLMNRHLCEMECMPFYRTFIESTQNPPNLAALPTDCPCLKQICQEFAYISQDVLAISTSSTLHRRLLSQIETPKVMRESPNLNWKRIWLNVNSRQLNSLERSCYYLLVNKKILHAKLLHRMNLLPSPVCEHCGVADEDLQHKYXTCTRTANAWTIXQQIINVFVPNRALSFEDMMKPTLLCLEQRTKIKIMKMFICYVNYINSEDNLIQLDSLKFHLEIICNE
>L1_Ele21_gag#LINE/L1 127-1242  [Aedes aegypti]
MASSPYHLTSNGPRVNTLVIDLANLPAKKINMEMIAKFIHDKLRIQFSSIQSLQHNTGKSLVFIECQTEELAIAVTERNDGNYEISVDNVKYKVNVFMEDGATTVRVHDISPQTENSSIEKELERYGDIVWLKEEMWTEPAVLKGIPNGVRSVRIRLHTAIPSYININGEVTLVTYKHQQQTCRHCGKPVHWGRKCIEAGYMEMQLNGGNISDRLRASGVDYAGVLKTSNQTGTSQEIRNSVSSEAEKNRVDPNYTNLTQLFNKSSSQGQDRKKITTNTVESNEKLAIKSTNTNTNSKFQAPSENTESSAAKTATSKLARGSMAVNPIASGIEVSNNFDGLDISDDDMDGTHASGCKSPSRKKIGLSVDSSE
>L1_Ele21_pol#LINE/L1 1253-4444  [Aedes aegypti]
MDMLSYNIGTLNINGIANENKINALRSFIYLMDLDILMLQEVHEHITISGFDTFSNIDLNKRGTAILVKSHINTSHVQKSIDSRVISLKIENHTTICNIYAPSGTAQKSLRERFFTDTIHYYVNNGDGRLIVGGDFNSVIDKKDANHGSNFSQSLKFVVQSLKLNDVWQIVHKNAVDFTFIRSGSGARLDRIYVSDDLKGYVSTVRTNVCAFSDHKIVILKLKLPNLGRPFGRGLWRLNDLALTDENLAEFREKWIYWVRQKRYYDSWFSWWNEYAKIKTVSFFKWKYSTLKRRYSDTMEFFYSALNILYNDYLTNPDVLSEINKVKAKMLALQKEMSNNFYGRSETFISGENSSIFQLGEQKQRREKTHIKTLRINGQDEADIEIVTEEITTFFKNLYTKSNVVIENSFEPQKTIQDNFPANSRLMDPISEEELFQAIKTSQSRKCPGKDGLTKNFYIKCWEIIKTELLLVVNEVINGKTSTKFLEGVIVLIRKKKTNNDISGFRPITLLNFDYKLVSRILKNRLVKLNEALLSNTQKCSNGSRTIFEATCGIRNKIVEINLKRKKGLLISFDLEKAFDRVNHEYLLATLSKMGINNRFVDFMRLCQNNTYSRILINGNMSETIRIERSVRQGDPLAMILFCFYLEPLLQKIQNICEDEMDLLVGYADDISLIIFDVRKLSVVKQIFDNFELVAGAKVNYNKTKAMRIGSNNNFILPDWLEHEEYLKILGIWFNNNSNAMIQKNWDEILQNLRYMLWNSQFRNLNLIQKIIFLNTYASSRMWYTASTVSVHKKTLTKIKSLFGNFLWYRCSLRISFNQLCLPRKRGGLGLISPEHKCKSLLINRFLRLRQSSPFLHNYTDRIENPPNMKGLPCNAHFLKTVYLELAYISENIKNNPTSQSIYNHFCSNLPKPHITEKYPQFRWDIIWKNVFSRQISSDHQVTWFLLINEKIICAEKQFRFGSRVSPNCVYCPQEIEDLKHRFSTCPKIRNCWWFTVTQIKLLNRRKFRNISFDDFKFPVLRTYNQLERKIASKMFLEFLRYAIANDREDVSVEELKFIMNCNI
>L1_Ele26_gag#LINE/L1 171-1346  [Aedes aegypti]
MASVRPRENTFKVDLTNFPKRPTFEDIHKFVYETLGLTVDHVVRLQMNHAQNCVHIKCRDLQTAQDVVQMHNEKHEIEVNKTKVKVRLVMDDGGVEVKIHDLSENIRNEEIVAFLKQYGDVITIKDQIWSENYPLKGIPTGVRVVKMMLRRHIKSFVTIQGEQTLVTYRNQVHTCKHCTNPSHPGSTCVENKKLLGQKADLNDRLKLAAQSNNNPSTSFASVVNKSTATLMPHFVSLNELASSAPASVATNNTVSTCSLPSVSDQPEIPAATTDGNDMQMKTTGMEEQWIDSAQQNIGEASTSGGITAGESAKQPSAGDQSTHQAATAVHDKATTSSVSVFKIPSNPSNTPNLTMEISDSDSYESSQDNGSFQKVKRRGRPKKPKIDPXFRS
>L1_Ele26_pol#LINE/L1 1458-4658  [Aedes aegypti]
MNNPSISYNIGSVNICAMSSVTKIQSMCSFFRLMDFDIVLLQEVENSRLSIPGYTVITNVDERKRGTAVALKAHIPYCNVQRSLDGRIICVNVGNCVTVCNVYPPSGTQNTSSREHFFRQSLPFYLQQSTPNLILGGDFNCVVSAKDATGSSNHSQSLKQLLDSLKLCDTWDCVHKNQIAYSFVRPNCASRIDRIYVSSSLVSSLRTSEYFVTPFSDHKAYKMRCCLPNLGKPQGRGFWSMRTHVLTPENLEEFEIKWNRWLRERRNFDSWMSWWLNFVKPKIISFFKWKTNLAFREFHVRNEYLYRRLREAYDNLYANPQGLTEVNSIKGKMLNLQSKFSKSFERINETIIAGEKISAFQLGERIQKKNKSTIRSMTHANIRLENPTEIERHVCQYFEALYTDENLSVNTEFPCNRFISPNCEFNIGAMNEITTQEIFFAIKSSASRKSPGCDGLPKEFFLKTFDIIHRQLNLVINEALRGNIQQKFVDGIIVLSKKKGGDDSIKGYRPISLLNFDYKLLSRILKQRMDKIMTDNNLLNSNQKCSNSKRNIFEAVCAIKDRIVEINCKRRSGRLISFDLDHAFDRVNVNFLLNVMRSMRFHTDFVSLVGKIMSMSHSRILVNGNLSPEIPILRSVRQGDPISMHLFVLYLHPLLEKLTTICNHPLELVVAYADDISIIVVEELKLDLIKKAFMDFGMCSGAKLNLTKTTSIHIGAQQPTNRMVSWLKSEEAIKILGVVYFNSLKRTLDFNWAEVIKKTSRLMWLFKQRVLSMHQKVALINTFITSRLWFMASVLSIPNSAVAKITSRIGGFIWSRYPCRISMEQLSLPVEKGGLNLHLPMHKCKALLLNRFLQCGEHTPFAASFLEQMANPPNVSGIPALYPCLKQISKELPYLPESTIRNPSAPAIHSIFRNMIKSPKIVEENPNIHWARVWKNIRRKTFTSEEKSTYYLVINEKIPHAALFFRQNRIDSPMCNRCPNAVEDLEHKLSTCVRVQHLWNHLRLKLETILNRRVTYKMLSLPELNNTEVNTRNKALKMFIVYVNFVLDVNSCFTIEALDFVLCCNCL
>L1_Ele28_gag#LINE/L1 151-1494  [Aedes aegypti]
MSSPKSRENTFRVDFSNLPKRMSYEETHNFVHNTLGLSLDAVVRLQVNHALNCAQVKCRDLKTAQETVIKHNAKHDVEINSTKYKVKLIMDDGGIEVKIHDLSENVTSEQICEFLKHYGDVIAVKELMWGDNFIYKGVSTGVRVAKMVLRKHIKSYVVVQGEQTLISYSGQPATCKHCANLVHPGMTCVQNKKLITQKTDLTARLTRAREERSSYADIAGSSPILMPAQNNTGFRSAEALMPEFVKLGGMRKDQEATNTAKENSKLSVHSNIEGEVAGASTSFSTAAAAAGVEAAADAAEGDADVEEAVGGQLFSQSEELRTEIIIPMNVDLVEADHDTEVDSSTVSGNTENAETLSQPQILNVYSQKRVPILATDTTKVSKTSVHQSSEKHFKVPAGICDGAMEVSESELEMRAHKEFEFSSDASCHDDGFVVKRSRHRSKKARTTH
>L1_Ele28_pol#LINE/L1 1499-4690  [Aedes aegypti]
MSVLNTFKSYNIASININAISNENKVNSLRSMIRLLDLDIVLLQEVENSRLSFPGFQVYSNVNETRRGTAIALKMHIPVSNVQRSLDSRIISVKINNSVTICNVYAPSGVQNYHSREDMFNQFVPYYLQSASEYVVFGGDFNCVTANKDATGVNNKSAALRTLIQNMNMRDTWDCLSREIEFSFIRSNCKSRLDRIYVSANLVEQLRSASFHVNCFSDHKVYRIRLCLPDLGRAAGNGYWAMRAHVLTEENVEVFENKWNYWCRQRRNYNSWIEWWIDYAKPRIKGFFKKKTNDSFREFHAKNEFLYARSKTAYEELYQHPNKMSEVNRLKGKMLLLQREFSKKFVRINDQCLEEESMSSYQLGDRIKKKSSSHITSIVDQQRQINGSAAVEEHVYQYFRDLYSASETQEYQDATTTTKIPENSQENLRIMDEVTTEEIFRAIKSSASKKSPGVDGLPKEFFVAAFNVIHRQLNLIVNEAMQGNIPQKFVEGVVVLCKKKGGENSIKGYRPLTMLNYDYKLVSRILKSRVASVIDKNNLLTHSQKCSNAKKNIFEALHAIKDRIAEIRHKKKRARVVSLDLDHAFDRVEHCFLFRVMRDMGFHERLIELLRKIMQNSRSRVLVNGHLSPEFQIGRSVRQGDPISMYLFVIYLHPLLEKLHMICNDPLELVVAYADDITVVIVDDSKLEQIKRTFHEFGQYSGAVLSLSKTIALNIGDLSRPQSVVNWPSVSDSVKILGITFFNDHKVMIEFNWKETIRKMTQLMWMFKPRLIVLHQKIRLLNVYVTSKLWFVASVLSIRNQDVAKVTKHIGTFIWGRKPRVAMNQLIQPVSKGGLNLHLPMYKCKALLANRTLQVREVIPFGNRLITEATNGNNPVFPDMYPCIKVVWRVVQDLPQQVMENICSSAIERHLTQELPIPKIISENPAVRWPSVFQNIHSKHMSAIEKTTMYLFVNQKLPHAQLLYKIGQTTSPNCATCRLTVESQEHKLANCPKVARLWSYLCSKLRLHLNTRIEYSIMKTPEFRDVSRNSRIAVLKLFVKYVVYILEGSIPLNVQELEHILNLN
>L1_Fc_gag#LINE/L1 934-1824 [Felis]
MTKRKNSPQKNLQEIATANELIKNDLNNITESEFRIIVIKLIAGLENSIXDSRESIATEIKGLRNSQEELKNAINEXQNKMETTTARIEEAEERIGELEDKIMEKEEAEKKRDKKIQEYEGKIRELSDALKRNNIRIIGIPEEEERGKGAEGVLEEIIAENFPDLGKEKGIEIQEAQRTPFRRNLNRSSARHIIVKLAKYKDKEKILKAARDKRALTYKGRPIRLVTDLSTETWQARKEWQEIFNVMNRKNMQPRXLYPAGLSFRIEGEIKVFPNKQKLKEFITTKPALQEILRGIL
>L1_Fc_pol#LINE/L1 1878-5384 1 frameshift [Felis]
MTLNPYLSIITLNVNGLNAPTKRHRVSEWIKKQDPSICCLQETHFRPEDTFRLKVRGWRTIYHATGSQKKAGLAILRSDKLDFKLKAVTRDEEGHYITITGSIHQEELTIINVYAPNTGAPKYVKLLITNISNLIDKNVVIAGDFNTPLTTMDRSSRHTVNKETRALNDTLDQMDLTDIFRTLHPKATEYTFFSSAHGTFSKIDHILGHKTALHKYKRIEIIPCILSDHNAMKLEINHRKKSGKPPKAWRLKNTLLKNEWVNQAIREEIKKYMETNENENTTIQTLWDAAKAVLRGKYIAIQAYLKKQEKSPIQNLTAHLKEIEAEQQRQPKPSRRREIIKIRAEINNIESKKTVEQINETKSWFFEKINKIDKPLARLLKKKREMTQIDKIMNENGIITTNPSEIQAIIREYYEKLYANKLDNLEEMDKFLSTHTLPKLNQEEIESLNRPITSEEIESVIKNLPTNKSPGPDGFPGEFYQTFKAEIIPILLKLFQKIEREGKLPDSFYEASITLIPKPDRDPVKKENYRPISLMNMDAKILNKILANRIQQHIKRIIHHDQVGFIPGMQGWFNIRKSINVIHHINKRKDKNHMILSIDAEKAFDKIQHPFLIKTLEKVGIEGTYLNIIKAIYEKPTANIILNGEKLRAFSLRSGTRQGCPLSPLLFNIVLEVLASAIRQQKEIKGIKIGKDEVKLSLFADDMILYMENPIDSTKSLLELIHEFSKVAGYKINVQKSVAFLYTNXEATERQIKKLIPFTIAPRSIKYLGINLTKDVXDLYAENYRKLMKEIEEDIKKWKTIPCSWIGRINIVKMSILAKAIYTFNAIPIKIAPAFFSKLEQAILKFIWNHKRPRIAKVILKKKTKAGGITIPDFSLYYKAVIIKTAWYWHKNRHIDQWNRIETPELDPQTYGQLIFDKAGKNIQWKKDSLFNKWCWENWTATCRRLKLDHFLTPFTKINSKWIKDLNVRQETIKTLEEKAGKDLSDLSRSNFLLDTSPKARELKAKMNYWDLMKIKSFCTAKETTNKTKRQPTEWEKIFANDISDKGLVSKIYKELTKLHTRKTNNPVKKWAENMNRHFSKEDIRMANRHMKRCSTSLLIREIQIKTTLRYHLTPVRVAKMNKSGDYRCWRGCGETGTLLHCWWECKLVQPLWKTVWRFLKKLKIDLP
>L1_Lme#LINE/L1 1-2353 via tfasty with L1-8_DR_pol, 1 frameshift and 1 stopcodon. [Latimeria menadoensis]
EVVTAIRNINNGKSPGEDGFPIEFYKTYMEHIAPLLLEVYQEIQEKGRLPESMNKAIITLIPKQGKDPLECGSYRPISLLNVDYKILAKILAKRLEKIIPTLIHPDQTGFVAGRYSADNLRRLLHVIWEVRDEEEPAAALSLDAEKAFDRVEWDYLFxILQHLEFGDNFRKYVEMLYSRPTASVITNGTTSEPFPLGRGTRQGCPLSPLLFILALEPLASKIRANPQVQGIQVGEQEHKITLYADDILLFISNPQDSIPTLLDIIAQFATISGYKINWSKSEVLPLTGSCNSTMFEDWGFKWKAQGLKYLGILINTGLENMVEDNISAFLARFRLDLQRWGKLQLSLWGRVNLLKMISAPQLNYILSMLPLSIPTSSFKIIDGLISAFIWAGKRPLMAKKKLQAEVQQGGLKVPNFELYHIAQEISYLFRIAGTEGRDVLPSVQIERDKTQMKVAQWYAGLKVSGYRDPNPVIRHARLCWHKAHTICGQSTHLNANSYLWENPAILVQGKPIRWTAWVTRGICNIGDIWGPEGVLSFPILRETFGLSSAEFLHYLQLKHSLDRREALTPGMLQTSSINELQRTIAGKRGAVSRIYSFLLNKNPPKRDNIRKAWESELGLTLTDDVWEEALASALTAGIDIKSRLIQFKIINRIYWTPAKLLTARLPNTDKCWRCSSEKGTLLHMLWECPKLKCYWTQIRTFLESLVEIDTMDNPQACILGEVSSFLKSALVTAKRVILRHWRQADSPTFQEWFLTMADTAAHERVILKVRNRLDLFEKVWSGFL
>L1_Loris_pol#LINE/L1 gi|126296|sp|P08548|LIN1_NYCCO LINE-1 reverse transcriptase homolog [Nycticebus coucang]
TGLSKGLSIFSINVNGLNCPLKRHRLADWIQKLKPDICCIQESHLTLKDKYRLKVKGWSSIFQANGKQKKAGIAILFADAIGFKPTKIRKDKDGHFIFVKGNTQYDEISIINIYAPNHNAPQFIRETLTDMSNLISSTSIVVGDFNTPLAVLDRSSKKKLSKEILDLNSTIQHLDLTDIYRTFHPNKTEYTFFSSAHGTYSKIDHILGHKSNLSKFKKIEIIPCIFSDHHGIKVELNNNRNLHTHTKTWKLNNLMLKDTWVIDEIKKEITKFLEQNNNQDTNYQNLWDTAKAVLRGKFIALQAFLKKTEREEVNNLMGHLKQLEKEEHSNPKPSRRKEITKIRAELNEIENKRIIQQINKSKSWFFEKINKIDKPLANLTRKKRVKSLISSIRNGNDEITTDPSEIQKILNEYYKKLYSHKYENLKEIDQYLEACHLPRLSQKEVEMLNRPISSSEIASTIQNLPKKKSPGPDGFTSEFYQTFKEELVPILLNLFQNIEKEGILPNTFYEANITLIPKPGKDPTRKENYRPISLMNIDAKILNKILTNRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINVIQHINKLKNKDHMILSIDAEKAFDNIQHPFMIRTLKKIGIEGTFLKLIEAIYSKPTANIILNGVKLKSFPLRSGTRQGCPLSPLLFNIVMEVLAIAIREEKAIKGIHIGSEEIKLSLFADDMIVYLENTRDSTTKLLEVIKEYSNVSGYKINTHKSVAFIYTNNNQAEKTVKDSIPFTVVPKKMKYLGVYLTKDVKDLYKENYETLRKEIAEDVNKWKNIPCSWLGRINIVKMSILPKAIYNFNAIPIKAPLSYFKDLEKIILHFIWNQKKPQIAKTLLSNKNKAGGITLPDLRLYYKSIVIKTAWYWHKNREVDVWNRIENQEMDPATYHYLIFDKPIKNIQWGKDSLFNKWCWVNWLAICRRLKLDPHLSPLTKIDSHWIKDLNLRHETIKILEESAGKTLEGISLGEYFMRRTPQAIEAVSKIHYWDLIKLKSFCTAKNIVSKASRQPSEWEKIFAGYTSDKGLITRIHRELKHINKKRTRDPISGWARDLKRNFSKEDRHTIYKHMKKSSSSLIIREMQIKTTLRYHLTPVRVAHITKSPNQRCWRGCGGKGTLLHCWWECPLIRSFWKDVWRILRDLKIDLPFDPIIPLLGLYPEDQKSQYNKDICTRMFIAAQFIIAKSWKKPKCPSTHEWTSKLWYMYTMEYYAALKKDGDFTSFMFTWMELEHILLSKVSQ
>L1_MM_gag#LINE/L1 946-2016 [Mus]
MAKGKRKNPTNRNQDRSPSSERSTPTPPSPGHPNTTENLDPDLKTFLMMMIEDIKKDFHKSLKDLQESTAKELQALKEKQENTAKQVMEMNKTILELKGEVDTIKKTQSEATLEIETLGKRSGTIDASISNRIQEMEERISGAEDSIENIDTTVKENTKCKRILTQNIQVIQDTMRRPNLRIIGIDENEDFQLKGPANIFNKIIEENFPNIKKEMPMIIQEAYRTPNRLDQKRNSSRHIIIRTTNALNKDRILKAVREKGQVTYKGRPIRITPDFSPETMKARRAWTDVIQTLREHKCQPRLLYPAKLSITIDGETKVFHDKTKFTQYLSTNPALQRIITEKKQYKDGNHALEQPRK
>L1_MM_pol#LINE/L1 2060-5902 [Mus]
MPTLTTKIKGSNNYFSLISLNINGLNSPIKRHRLTDWLHKQDPTFCCLQETHLREKDRHYLRVKGWKTTFQANGLKKQAGVAILISDKIDFQPKVIKKDKEGHFILIKGKILQEELSILNIYAPNARAATFIRDTLVKLKAYIAPHTIIVGDFNTPLSSKDRSWKQKLNRDTVKLTEVMKQMDLTDIYRAFYPKTKGYTFFSAPHGTFSKIDHIIGHKTGLNRYKNIEIVPCILSDHHGLRLIFNDNINNGKPTFTWKLNNTLFNDTLVKEGIKKEIKDFLEFNENEATTYPNLWDTMKAFLRGKLIALSASKKKRETAHTSSLTTHLKALEKKEAHSPKRSRRQEIIKLRGEINQVETRRTIQRINQTRSWFFEKINKIDKPLARLTKGHRDKILINKIRNEKGDITTDPEEIQNTIRSFYTRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVINSLPTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHYINKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNGEKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIKGIQIGKEEVKISLFADDMIVYISDPKNSTRELINLINSFGEVAGYKINSNKSMAFLYTKNKQAEKEIRETTPFSIVTNNIKYLGVTLTKEVKDLYDKNFKSLKKEIKEDLRRWKDLPCSWIGRINIVKMAILPKAIYRFNAIPIKIPTQFFNELEGAICKFVWNNKKPRIAKSLLKDKRTSGGITMPDLKLYYRAIVIKTAWYWYRDRQVDQWNRIEDPEMNPHTYGHLIFDKGAKTIQWKKDSIFNNWCWHNWLLSCRRMRIDPYLSPCTKVKSKWIKELHIKPETLKLIEEKVGKSLEDMGTGEKFLNRTAMACAVRSRIDKWDLMKLQSFCKAKDTVNKTKRPPTDWERIFTYPKSDRGLISNIYKELKKVDFRKSNNPIKKWGSELNKEFSPEEYRMAEKHLKKCSTSLIIREMQIKTTLRFHLTPVRMAKIKNSGDSRCWRGCGERGTLLHCWWECRLVQPLWKSVWRFLRKLDIVLPEDPAIPLLGIYPEDAPTGKKDTCSTMFIAALFIIARSWKEPRCPSTEEWIQKMWYIYTMEYYSAIKKNEFMKFLAKWMDLEGIILSEVTHSQRNSHNMYSLISGY
>L1_Mdo1_gag#LINE/L1 664-1641 [Monodelphis]
MAHMAQNQASRKKGKKVTIENFYGGSTQGKEENEDEIQKKSEHASQNGNYQQALEDLKLELTQKMETWKEKWEKEISSLTDKTAQLEKELEASNRRADKAEKQNQSLTTRIKQLEESEIIKQQESIKQTQKINELEENIKYLTEKVTDLENRGRRDNLRIIGLPEKPEINNKLDIILQEIIKENCXHVLEQGGKIEIERVHRTPSILNPQKTTPRNVIAKFKSFQEKEKILQEAKKRSFRYRGAPIRITHDLAANTLRDRKAWNTIFRKARELGLQPRINYPAKLTIYFQGKVWAFNKIEDFQAFAKKRPELSGKFDIQAQKARET
>L1_Mdo2_gag#LINE/L1 800-1765 [Monodelphis]
MANXTEAQKPQNXKKNKKKGATLDTFYGAKIQNTEEIEEETQANAPKPSKGNGNSPQTHEEFESEMIKKMEAFWEEKWEIMQKKFTHLQNRFDQTEKENQALKVRIRQLEDNEQVKEQESIKQSQKTKKLEENIKYLTDKVTDLENRGRRDNLRIIGLPEKPEINSKLDIVIQDIIKENCPEILEQGGNTATDRAHRTPSTLNPQKTTPRNVIAKFQSFQTKEKILQEARKRQFRYKGMPIRVTQDLASSTLNDRKAWNMIFRKARELGLQPRISYPAKLTIYFQGKVWAFNKIEDFQVFAKKRPELCGKFDIEKQRAWNT
>L1_Mdo3_gag#LINE/L1 573-1580 [Monodelphis]
MANCAQEQQPPSTKKNKKKGLTLEXFYGGKTQATEEIEEEIQINAPKPSKKNGNCPQALEEFKLELIKKMEAFWQEKWEIVQRENNSLKDKNSQLEKQLEATKSRIDQTEKENQSLKTRIRQLEXNDLAKQQELIKQSQKTDKIEENIKYLTEKMTDQENRARRDNLRIIGLPEKPEINRNLDIILQEIIQENCPDVLEQGGKIDIERVHRTPSTLNPQKTTPRNVIAKFXSFQAKEKILQEAKKRQFRYQGAPIRITQDLAASTLKDRKAWNTIFRKARELGLQPRITYPSKLTIYFQGKVWAFNKIEDFQVFVKKRPELSGKFDIQTQRSRET
>L1_Mdo3_pol#LINE/L1 2273-6082  [Monodelphis]
MLGNTQVXIITLNVNGMNSPIKRKQIGEWIRIQNPTICCLQETHLRRVDTHKVRIKGWSKTYWASTDRKKAGVAIMISDKAKVKIDLIKRDREGKYILIKGSIDNEEISVINMYAPNGIASKFLKEKLVELKEEIDSKTILVGDLNLPLSNLDKSNXKINKKEVRDVNEILEKLELIDIWRKINRDKKEYTFFSAAHGTFTKIDHVLGHKNMANKCRKAEIINATFSDHNAIKIMISKGTWRAKSKINWKLNNMILQNRLVREQIIETINNFIEENDNDETSFQNLWDAAKAVLRGKFISLSSYINKLGRAEVNELDMQIKKLESEQIKNPQKKTKLEILKIKGEINKIESERTIELINKTRSWYFEKTNKIDKVLVNLIKKRKEENQINSIIDEKGDLTSNEEEIKAIIKNYFAQLYGNKYANLGDMDEYLQKYKLPRLTEEEIEFLNNPISEKEIEQAIKELPKKKSPGPDGFTSEFYQTFKEQLIPILYKLFDIISKEGVLPNSFYDTNMVLIPKPGRSKTEKENYRPISLMNIDAKILNRILAKRLQQVITRVIHYDQVGFIPGMQGWFNIRKTIHIIDHIDKQTNKNHMIISIDAEKAFDKIQHSFLLKTLESIGIEGSFLKIINSIYLKPSANIICNGDKLDAFPIRSGVKQGCPLSPLLFNIVLETLAVAIREEKEIEGIKIGNEETKLSLFADDMMVYLKNPRESTKKLVEIINNFSKVAGYKINPHKSSAFLYISNTSQQQELEREIPFKITLDNIKYLGIYLPRQTQELYEHNYKTLSTQLKLDLNNWKNINCSWVGRANIIKMTILPKLIYLFSAIPIELPKNFFTELEKTITKFIWKNKRSRISREIMKKNAKEGGLAVPDLKLYYKAVVIKTIWYWLRDRKEDQWNRLGVSDLSKTVYDKPKDPSFWDQNPLFDKNCWENWKTVWERLGLDQHLTPYTKINSEWVNDLNIKKETISKLGEHRIVYMSDLWERKDFKTKQDLEKVTKCKINNFDYIKLKRFCTNKTNVTKIRREVTNWETIFITKTSDKGLITQIYKELNQLYKKSSHSPIDKWARDMNRQFSVKEIKTINKHMKKCSKSLIIREMQIKTTLRYHLTPSRLANMTAKESNECWRGCGKVGTLXHCWWSCELIQPFWRAIWNYAQRALKDCLPFDPAIALLGLYPKEIIRKXTCTRIFIAALFVVAKNWKTRGCPSIGEWLNKLWYMLVMEYYCAQRNNKVEEFHGNWNNLQEVMQSERSRTRRTLYTETDTLWYNRM
>L1_Mdo4_gag#LINE/L1 745-1875 [Monodelphis]
MRGARAQPNTGSKEGVNSSKQQKKKKEITIDSFCTGNEQRANETEGEDPAKEKSEIPANWIQALEELKMQFKTQLREAEDNWEKNLKTKISHLETENSVLKAKINQLENEAKEMKDEAKQMKDEVKKMKDDLQRKSDQKEKDDQKTKDEIQSLRTRIQQLESSDLTRQQDTIKQNQKNEKIEENMKHLIHKTEDLENRSRRDNLRIIGLPEDHDKRKSLDIILQEIIKENCPEILEQEGKVEIDRIHRSPPVLNPQLTTPRNVIAKFKNYQTKEKILQAAKKKSFRYQGTTVRITQDLAASTLKKRKAWNTIFRKARELGLQPRINYPAKLTIFLQGKVWSFNKIEEFQEFVKKRPDLNRKFDVQAQNSRESSKGN
>L1_Mdo4_pol#LINE/L1 2599-6405  [Monodelphis]
MLGNTQLVIITLNVNGMNSPIKRKRIAEWIRVQNPTICCLQETHMRKVDTHRVKVRGWSQIYWASTDKKKAGVAIMISDKAKVKINLVKRDREGNYILIKGSIDSEEISVLNMYAPNGIASKFLKEKLEELKDEIDRKTILVGDLNLPLSELDKSNQKINKKEVREVNEILEKLELVDMWRKINRDKKEYTFFSAAHGTFTKIDHVLGHKNIANKCKRAEIINATFSDHNAMKIIISKGTWRGKSKINWKLNNTILQNQLVKEQIIETINNFIEENDNDETSFQNLWDAAKAVLRGKFISLSSYINKLRRAEVNELGMQIKKLESEQIKNPQMKTKLEILKLKGEINKIESQRTIDLINKTRSWYFEKTNKIDKVLVSLIKKRKEINQIDSIQDEKGDLTSNEEEIKAIIKNYYAQLYGNKYGNLGDMDEYLQKYKLPRLKEEEINYLNNPISEKEIEQAIKELPKKKSPGPDGFTNEFYQTFKEQLIPILNKLFDRIGQEGVLPNSFYDTNMVLIPKPGRSKTEKENYRPISLMNIDAKILNRILAKRLQQVITRVIHYDQAGFIPGMQGWFNIRKTIHIIDHINKQTDKNHMIISIDAEKAFDKIQHPFLLKTLESIGIEGPFLKIINSIYLKPSANIICNGDKLEAFPIRSGVKQGCPLSPLLFNIVLETLAVAIREEKEIEGIKIGNEETKLSLFADDMMVYLRNPRESTKKLLEIINNFSKVAGYKINPHKSSAFLYISNPFQQQELESEIPFKITLDNIKYLGIYLPRQTQELYEHNYKTLSTQLKLDLNNWKNIDCSWVGRANIIKMTILPKLIYLFSAIPIELPKNFFTELEKXITKFIWKNKRSRISREIMKKNAKEGGLAVPDLKLYYKAVVIKTIWYWLRDRKEDQWNRLGVNDLSKTVYDKPKDPSFWDKNPLFDKNCWENWKTVWERLGLDQHLTPYTKINSEWVNDLNIKKETISKLGEHRIVYMSDLWEGKDFKTKQDLERVTKCKINNFDYIKLKSFCTNKTNVTKIRRVATNWETIFIKTSDKGLITQIYKELNQLYKKSSHSPIDKWARDMNRQFSAKEIKTINKHMKKCSTSLIIREMQIKTTLRYHLTPSRLANMTAMESNECWRGCGKVGTLIHCWWSCELIQPFWRAIWNYAQRAIKDCLPFDPAIALLGLYPKEIIRKKTCTRIFIAALFVVAKNWKMRGCPSIGEWLNKLWYMLVMEYYCAKRNNKVEEFHGDWNNLQEVMQSERSRTRKTLYTETDTLWYNRR
>L1_Mur1_gag#LINE/L1 L1_Mur1_5end#LINE/L1 920-2017 [Muridae]
MARGKRKTISNRSQYTWASSEPSSPTTASPEYTNTPENQEADLKSYLMKIIESFKEDINNSLKEIQENTGKQVEALKEETNKSLKEIQENTIKQVKELHKAVQDLKVEVETIKKTQMEANXEMENLGKRSGITDVSITNRIQEIEERISGVEDTVEEIDTTVKENSKHKKLLTQNIQEIQDTMKRPNLRIIGIEENEDSQLKGPENVFNKIIEENFPNLKKEMAIKVQEAYRTPNKWDQKRKSSRHIIVKTLNAQNKERILKAAREKGQVTYKGRPIRITPDFSTETMKARRAWSEVMQTLREHKCQPRLLYPAKLSINIDGETKIFQDKTKFKQYLSTNPALQRILEGKLQHKEDTYTKEKTRY
>L1_Mur1_pol#LINE/L1 L1_Mur1_orf2_900-4684 [Muridae]
LSLISLNINGLNSPIKRHKLTDWIRKQDPAFCCIQETHLNNKDRHYLRVKGWKKVFQANGPKKQAGVAILISNKIDFQPKVIKHDEEGHFIFIKGKIHQEKVSILNIYAPNARAPTFIKETLLKLKTHIEPHTIIVGDFNTPLSPMDRSLKQKLNRDTVKLIEVMNQMDLTDIYRTFHPKTKEYTFFSAPHGTFSKIDHIIGHKTTLNRYKKIEIIPCTLSDHHGLKLVFNNSKSNRKPTYTWKLNNSLLNDNLVRDEIKKEIKDFLEFNENVDTSYPNLWDTMKAVLRGKFIALSALVKKLERSYTSNLTAHLRALEQKEANSPKRSRRQEIVKLRAEINQIETKRTIQRISKTKSWFFERINKIDKPLAKLTKGPRGSIQINKIRNEKGDITTETEEIQKIIRSYYKSLYSTKLENLDEMDGFLDRYHIPKLNQEQVNFLNRPISHKEIEEVIKNLPTKKSPGPDGFSSEFYQTFKEDLIPIFLKLFHKIETEGTLPNSFYEATITLIPKPHKDPTKKENFRPISLMNIDAKILNKILANRIQEHIKTIIHHDQVGFIPGMQGWFNIRKSINVIHHINKLKEKNHMIISLDAEKAFDKIQHPFMLKVLERSGIQGPYLNIIKAIYCKPTANIKLNGEILEAIPLKSGTRQGCPLSPYLFNIVLEVLARTIRQQKEIKGIQIGKEELKVSLFADDMIVYISDPKNSTRELLQLINNFSKVAGYKINSNKSVAFLYTNDKQAEKEIRETTPFTIATDNIKYLGVTLTKQVKDLYDKNFKSLKKEIEEDLRKWRDLPCSWIGRINIVKMAILPKAIYRFNAIPIKIPTQFFKDMERAILKFIWKGKKPRIAKTILNNKRTAGGITIPDLKLYYRAIVIKTAWYWYRDRQVDQWNRIEDPEIKPHTYAHLIFDKEAKNIQWKKESIFNKWCWSNWLSVCRKMKIDPYLSPCTKLKSKWIKDLNIKPDTLNLIEEKVGKSLELIGTGGNFLNRTPMAHALRSRIDKWDLMKLESFCKAKDIVNKTNRQPTDWEKIFTNPTSDRGLISKIYKELKKLTTKKPNNPIKKWGIELNREFTTEESRMAEKHLKKCSKSLVIREMQIKTTLRFHLTPVRMAKIKTSGDNTCWRGCGERGTLLHCWWDCKLVQPLWKSIWRFLRKLEIDLPKDPAIPLLGIYPKDAPPCHRGTCSTMFIAALFVIARSWKQPRCPTTEEWIQKMWFIYTMEYYSAIKNEDILSFAGKWMELENIILSEVTQTQKDMHGM
>L1_Mur3_gag#LINE/L1 972-2012 [Muridae]
MPRRQRKNTINNSQDNMSPLEPSNPTTAGPEXCNIAEAQDKDLKIAFMNMIEVLKEEMNKSLKEIYENTNKQWKEMNKTVQDLKVEIESIKKTQTEGNLEMKNLGTRTGTSEASLTNRIQEMEERISGIEDTIEEMDTSVKENVKSKKKILAQNIQEIWDTMKRPNLRIIGIEEGEETQVKGTENIFNKIIEENFPNLKKEMPIKVQEAYRTPNRLDQKRKSPRHIIIKTLNVQNKERILKAAREKDQVTYKGRPIRITPDFSMETLKARRAWTDVLQTLRDHRCQPRLLYPAKLSITIDGENKTFHDKTKFKQYLSTNPALQKALEGKLQPKEVNNHTQENTRNK
>L1_Mur3_pol#LINE/L1 L1_Mur3 2078-5863 via tfasty with L1MA6_pol, 1 stopcodon.  [Muridae]
INKHCSLISLNINGLNSPIKRHRLTEWMXKQDPSFCCIQETHLNIKDRHHLRVKGWKKIFQANGPKKQAGVAILISDKIDFKPKLIRRDREGHYILIKGKIHQEDIAILNIYAPNTRAPKFIKETLLQLKSHIDPHTLIVGDFNTPLSPIDRSSRQKLNREMLELTDVINQMDLTDIYRTFHPNTKEYTFFSAPHGTFSKIDHILGHKASLNRYKKIEITPCILSDHHGLKLDINNNRKLTNSWKLNNSLLNEKWVKTEIKKEIKDFLELNENEYTTYPNLWDTMKAVLRGKFIALSAYIKKXERSHTSNLTAHLKALEQKEEITPKRSRRQEIIKLRAEINKIETNKTIQRINETKSWFFEKINKIDKPLSKLTKRQRENIQINKIRNEKGDITTDTEEIQRIIRTYFKNLYSTKLENLKEMDNFLDTYHLPKLNQDQISNLNRPITPSEIEAVIKSLPTKKSPGPDGFSAEFYQTFKEELMPILLKLFHKIETEGTLPNLFYEATVTLIPKPHKDPTKKENYRPISLMNIDAKILNKILANRIQEHIKKIIHHDQVGFIPEMQGWFNIXKSINVIHHINKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERLGIQGTYLNIIKAVYSKPIANINLNGEKLKAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQLKEIKGIQIGKEEVKVSLFADDMIVYISDPKNSTRKLLQLINTFSKVAGYKINSQKSVALLYTNDKRTEKEIRETTPFTIASNNIKYLGVTLTKQVKDLYDKNFKXLKKEIEEDIRRWKDLPCSWIGRINIVKMAILPKAIYRFNAIPIKIPTQFFTDLERTIFSFIWKHKKPRIAKTILNNKRTAGGITIPDLKLYYRAIVIKTAWYWHKNRHVDQWNRIEDPDINPHTYGHLIFDKEARNTHWKKDSIFNKWCWSNWMAACRRIQIDPYLSPCTKLNSKWIKDLNIKPDTLNLIEEKVGNSLELIGTGKDFLNRTPLAQALRSTINKWDLMKLKSFCMAKDTIIRTKRQPTEWEKIFTNYTSDRGLISKIYKELKKLDIKKTNNPIXKWGTDLNREFSKEETQMAEKHLKKCSTSLAIREMQIKTTLRFHLTPVRMAKINKTSDSSCWRGCGVRGTLIHCWWECKLVQPLWKSVWWFLRKMGIDLPQDPAIPLLGIYPKDASSYHRDTCSTMFIAALFIIARSWKQPRCPSTEEWIKKMWYIYTMXYYSAIKXNXIMKFTGKWMELEKIILSEVTQTQKDKYGMY
>L1_RN_pol#LINE/L1 Full L1_Rn 2441-6262 via tfasty with L1_MM_2003-5905, 7 frameshifts.  [Rattus]
MNITGSNNHYSLISLNINGLNSPIKSHRLTNWIHNEDPAFCCLQETHLRDKDRHYLRVKGWKTNFQANGQKKQAGVAILISNKINFQLKVIKKDKEGHFIFIKGKIHQDELSILNIYAPNTRAPTYVKETLLKLKAHIAPHTIIVGDFNTPLSSMDRSWKQKLNSDVDSIREVMSQMDLTDIFRTFYPKAKGYTFFSAPHGTFSKIDHIIGQKTGLNRYRKIEIIPCVLSDHHGLKLVFNNNKGRMPTYTWKLNNALLNDNLVKEEIKKEIKNFLEFNENEGTTYPNLWDTMKAVLRGKLIALSACKKKQERAYVSSLTAHLKALEQKEANTLRRSRRQEIIKLRAEINQVETKRTIERINRTKSWFFEKINKIDKPLARLTRGHRECVQINKIRNEKGDITTDSEEIQKIIRSYYKNLYSIKLENLQEMDNFLDRYHVSKLNQEQINQLNNPITPKEIEAVIKGLPTKKSPGPDGFSAEFYQTFIEDLIPILSKLFHKIETDGALPNSFYEATITLIPKPHKDTTKKENFRPISLMNIDAKILNKILANRIQEHIKTIIHHDQVGFIPGMQGWFNIRKTINVIHYINKLKEQNHMIISLDAEKAFDKIQHPFMIRVPERIGIQGPYLNIVKAIYSKPVANIKLNGEKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARPIRQQKEIKGIQIGKEEVKISLFADDMIVYLSDPKSSTRERLKLINNFSKVAGYKINSNKSVAFLYTKEKQAEKEIRETTPFIIDPNNIKYLGVTLTKQVKDLYNKNFKTLRKEIEEDLRRWKDLPCSWIGRINIVKMAILPKAIYRFNAIPIKIPIQFFKELDRTICKFIWNNKKPRIAKAILNNKRTSGGITIPELKQYYRAIVIKTAWYWYRDRQIDQWNRTEDPEMNPHTYGHLIFDKGAKTIQWKKDSIFSKWCWFNWRATCRRMQIDPSLSPCTKLKSKWIKDLHIKPDTLKLIEEKLGKHLEHMSTGKNFLNKTPMAYALRSRIDKWDLIKLQSFCKAKDTVVRTKRQPTDWEKIFTNPTTDRGLISKIYKELKKLDRRKSNNPIKKWGSELNKEFTAEECRMAEKHLKKCSTSLVIREMQIKTTLRFHLTVVRMAKIKNSGDSRCWRGCGERGTLLHCWWDCRLVKPFWKSVWRFLRKLDIELPEDPAIPLLGIYPKDASTYKRDTCSTMFIAALFIIARNWKEPRCPSTEEWIQKMWYIYTMEYYSAIKNNEFMKFVGKWLELENIILSELTQSQKDIHGMHSLISGY
>L1_RS1_gag#LINE/L1 1019-2035  [Cercopithecinae]
MGKKQGRKAGNSKNKSASPPAKERSSSPATDQSWTENDFDEMREEGFSPSNFSELKEELRTQRKETKNLEKKVEELMARVINAEKVINEMKEMKTMTREIRDKCTSFSNRLDQLEERVSAIEDQMNEMKREEKPKEKRRKRNEQSLQEVWDYVKRPNLRLIGVPESEGENGTKLENTLQDIIQENFPNLVGQANIQIQEIQRTPQRYSSRRATPRHIIARFTKVEMKEKILRAAREKGRVTHKGKPIRLTADLSAETLQARREWGPIFNILKEKNFKPRISYPAKLSFISEGEIKSFTDKQMLRDFVTTRPALQETLKEALNMERNNRYQPLQKHAKM
>L1_RS1_pol#LINE/L1 2099-5392  [Cercopithecinae]
MAGSSSHITILTLNVNGLNAPIKRHRLANWIKSQDPSVCCIQETHLTRRDIHRLKIKGWRKIYQANGEQKKAGVAILVSDKTDFKPSKIKRDKEGHYIMVKGSIQQEELTILNIYAPNTGAPRFIKQVLRDLQRDLDSHTIIMGDFNTPLSTLDRSTRQKVNKDIQELNSSLQQADLIDIYRTLHPKSTEYTFFSAPHRTYSKIDHVIGSKALLSKCTRTEIITNCLSDHSAIKLELRTKKLNQNRSTTWKLNNLLLNDYWVHNEMKAEIKMFFETNENKDTTYQNLWDTFKAVCRGKFIALNAHKRKQERSKIDTLTSQLKELEKQEQTHSKASRRQEITKIRAELKEIETQKTLQKINESRSWFFEKINKIDRPLARLIKKKREKNQIDAIKNDKGDITTDPTEIQTTIREYYKHLYANKLENLEEMDNFLDTYTLPRLNQEEVESLNRPIAGSEIEAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEANIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINIIQHINRTKDKNHMIISIDAEKAFDKIQQPFMLKTLNKFGIDGTYLKIIRAIYDKPTANIILNGQKLEKFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYTSNRQTESQIRNELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLSEIKEDTNKWKNIPCSWIGRINIVKMAILPKVIYRFNAIPIKLPMSFFTELEKTALKFIWNQKRARISKTILSQKNKAGGITLPDFKLYYKATVTKTAWYWYQNRDIDQWNRTESSEIIPHIYSHLIFDKPERNKKWGKDSLFNKWCWENWLAISRKLKLDPFLTPYTKINSRWIRDLNVRPNTIKILEENLGSTIQDIGMGKDFMSKTPKATAAKAKIDKWDLIKLKSFCTAKETTIRVNRQPTEWEKIFAIYSSDKGLISRTYKELKQIYKKKTNNPIKKWAKDMNRHFSKEDIHTANRHMKKCSS
>L1_SS_gag#LINE/L1 1302-2189 [Suina]
MKKLRNHPQSNQQENSPKTVNNETDLCSXTDLEFKREIVKILKELREDMNSNADTLRKELENIRRSQEKLEHSFAEMQTELGAVKTRMNNAEERISDMEDRIMEITQSGQQTENRIKKLESNIRDLWDNIKRANLRIIGIPEGVEKDKGMENIFEEIIAGNFPNLKDTGFKIQEAQRAPNKLNPNRPTPRHIIIKMAKVSDKERILKAAREKQNVTYKGTPIRISADFSTETLQARREWQEIFKVLKGKNMQPRILYPARISFKIEGEIKIFPNKQKLKEYSNTKPRLKEILKGLL
>L1_SS_pol#LINE/L1 2710-6525 [Suina]
MAINNHLSIITLNVNGLNAPIKRHRVAEWIKRQKPSICCLQETHLRTKDTYRLKVKGWGKIFHANRHDRKAGVATLISDKIDFKTKDIKKDKEGHYLMIKGSIQGEDVTIVNIYAPNIGAPRYIQQILTDIKGDIDENTIIVGDLNTPLTSMDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKAEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQKSPKVSRRKEIIKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPDRDTTKKENYRPISLMNIDAKILNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSISIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNXVLEVLATAIRQTKEIKGIHIGREEXKLSLYADDMXLYXENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNETLEKEYKNTIPFKIAPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENPEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAACKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETKKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQPNSKKANQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKTLLKRDTCTRMFIAALFTIARTWKQPKCPSTDDWIRKMWYIYTMEYYSAIKKNDIMPFAATWMELENLXLSEMSQKDKDKYHMISLITGI
>L1_TD_gag#LINE/L1 952-3998 via tfasty with gi|50930947|ref|XP_, 7 frameshifts and 5 stopcodons.  [Triticum turgidum subsp. durum]
MGEEDLTCRRHGWSRSAATQARATCRCRPGYWRSWSWRSADQHGGRGRPCSTVCAAAGGVGRGASASGQANTTSAAGAVRRPAQGGGGERGVALHPRPTATGPVASGVQPRAGTARGTQPSERQGAVASKTNMHQPDDMAQPPTAKVLALGRGRGRQGRDGYTGYSRDSQNYNRYGQWGDDVYDAYGEGMHRGSSSGGGRGYNRYNPDNSGHFQGPPGNFVEGVARPKDRFRGGYRRGGRGRRPPPPRQYPPPLPPAAEMPSEEELEHAAKGVGDTPTLPAVALDTVRALAAVNVPMTTGGVKSKDGTSDKGPDKAEGEKLSKWAIKKKKLPCYRCGEPGHFVAELCDYCLHSQHVTRECPLLSGAKPGINIFGVYXKELMFFETPEVDLSTQMIESSFPAVIRITNGXLTEAQIVRQLREIVPGNYQWHLEQLEGQSYKVDFPTKEDQMHVLKWGLCKVTNTNIVIAFDEWKQEDPXGYYLLEKVWVRFYGVPPKYVKHFLIAWSLGGLIGKIEKVDMPFTRAQNAARLLVSVVSIEHIPDVVRWTHAGVTYLLELKIEDTAVSEAGDGTQDMDTTEGGGAPGDQEKGPDDTMPECGQWACYNSLITVDSSIKEAPPSTTPMNTLFFGSFVSRSAPSRLWSTRVDRXSDRAXASTTVESSRQCATMEPTSGATVGSVGMATVLGDLMGRRSTTPRYHCLTFRQREGRLERRSTTLFPIPRLRSSWGSDPGRSPVVVTASTGGAPSRAAKVRRLPRLIRGDEICEQAAPRSFVPLSPTPAVHSTTPLPPSPTIREGRGSPDRTPRERTTEELITFGGITDPVSAGRRVSNQIQGQPDADDFQLARAKRAAMLRHAETTAGTSFDISCSILHFSENELVDKANDLGISLGSNDTEVVKSVNDLLDMEAKRASEIIRNLASIQPMNDNDMNSLGINDLANICNNLLPSVETKDEEEVENTDTVAPLLTEEAVSVIDNNIVPQGVGEKPKRPWKRKIYPTSAVRRSARVKLKKKFHDDL
>L1_TD_pol#LINE/L1 4016-7645 via tfasty with Karin_TA, 8 frameshifts and 2 stopcodons. [Triticum turgidum subsp. durum]
NSRGLADLAKQRFLAKTTLEHHLDFVALLETRRDNFTSQFLQTLSSGIDFDWHILPPRGRSGGILLGVRCETLEVLNVVQGYFSVKFRVRLKLDGFRWSLVAVYVAAQAEFKPDFLADLVRICGDENLPVLVGGDFNIIRRREEKNNDNFDGRWSMMFNMIIESLNLREIELTGRQFTWANSLPVPTYEKLDRVLASVEWEQKYPLVSVHTTQRAISDHTPLFLDLGEATHVATKNTFSSEQSWFEREGFMDMIAREWAKPVMGRTHVERWQNKVRPLRQFLRGWARNESGIYKQKKERLTKLIEALDVKAETTLLSVHEHRTKSEAGQGLRALLREEELKWALRAKMLKVVQGDDMVANGKHRKKKIIQLEQDEGTIVGHENLKSYISNYYKSLFGPPNTSTVSLDESVIDDIPQLQAAENDVLSAPFLKKKVHLAVTQMKPNKASGPDGFPAEFYKKCWHIIKYDLMPMFHDFFQGHLELFHLNFGTITLLPKKKDQIEQFRPICLLNVSFKIFTKVGTNRLTQIAHSVVQPSQTAFMPGRHILKGVVVLHESLHEIHSKKLNGVILKVDFEKAYDKVKWPFLQQAMRMKGFSETWRHQVDTQVQKGSVRIKVNDDIGHYFQMHKGLRQGDSMSPLLFNIVADMLAVIIGRAKQHGHVEGLVPHLVDGGVSILQYADDTIIFMEHDMSKARNMKLILCLFEQFSGLKINFHKSEVFCFGKAKDKEHTYRQLFGCELGALPFSYLGIPIHHRKLSNKEWKVIEERIEKKLNCWKGKLMSYGGRLVLINLILTSMPMFLLSFFEIPKGVRKRLDFFRYRFFWQSDEAKRKYRLVCWDILCRPKDQGGLGIENLKIKNKCLMRKWLYKLGTEPEGMWSQILRNKYLHSKTLARTTIRPTDSPFWKGLMRTKDLFFCRVKFLVGNGMSTRFWKDTWLGETPLALQYPTLYNIVQRKEDYVGIVLXTIPLNIQFRRTLVDARWTAWMHLVRRLIEVRLSDVPDSTQWKLTKNGIFTVKSFYADLINSAPSPRSLHTWKVKVPLRIKIFMWFVHKQVILTKDNLLKRRWVGNSRCCFCDXDETIQHLFIECPLAKLLWRTIYIAFNINPPVDIASLFGTWLAGVEQITAAHIRIGICALLWAIWNCRNDMIFNRQHNLTFLQVIFRATAWIRTWPLLTPMDSREPLITGCNQWEMVARAIFNRFGWRSHNRIKG
>LINE1-3_SBi_pol#LINE/L1 2141-5804 via tfasty with L1-6_SBi_pol, 4 frameshifts. L1-3_SBi_pol near-identical with more errors. [Sorghum bicolor]
MKXVFWNSRGLADLAKHRFLDELVKEEQINFIALSETGRDXFPDHVLKNLCGGHDFLWHTMAPHGRSGGILLGVDLNVFDIGAIDEGDFYVKFTLRVKSNDFKFVLYTXYGPAQLQNKSAFLVELANTCSKETLPYXIGGDFNIMRXPEDKSSGDFDPKWXNLFNAVIESLDLKEIAMXGRQYXWAGPGDNPTFEKLDRVXVSXEWEIMFPLTTVEPRDGNISDHTPLVLNTGASTHQTHNRPFKFERGWLIRDGFYDMVANIWQSPCSGSTXLERWQFKIRRLRQYLRGWAKHXAGSYRKEKKTLLALLENLDKKAEISPLSDQEINLKHYLKERLVNLLREEELKWYERAKVKTLLEGDANTRFFHLVANGKHRKQHIYKLENDQGAVIXDDXLKSHITTYYKDLFXQPESSEISLREDQXLDIPQVXPEENDILVSPFTESEVRDAVFQMEHNKAPGPDGFPAEFYQVFWEXIKDDLXPLFAELHREALDXYSLNFGIITLIPKVNNAIKIQQYRPICVLNVSFKIFTKVGTNRLNMVAKTVVRPTQTAFMPGRNXMEGVVILHETIHELHTKKRDGVIFKIDFEKAYDKVKWSFLQQTLXMKGFSPKWCRWVETMVTGGSVGIKVNDDXXPYFQTKRGLRQGDPMSPILFNIVXDMLALLINRAKADGQIRGVXPHLIDDGLSILQYADDTIIFIDHDPEQAQNLKLLLCAFEQLSGLKINFHKSEIFCYXAAKEMESYYTSLFGCNXGEYPFXYLGIPMHHRQLLNSEWRKVEDRFKQKLSCWKAKYLSYGGRLXLLNSVLSSLPMFMMSFFEIPKGVIKNLDHYRSRFFWQXSSDKHKYRLAKWDIXCRPKDQGGLGILNLQLQNKCLLAKWLVNLXNTEGXWQSLLRNKYLRSKTLTQVTAKPNDSHFWRGLMRIKDEVLAKGSFDIKDGTDTRFWDDTWVXDKPLKVXYPSLYNIVRDPHAXVSKVMTTSPLNISFRRALVDNKLTXWLSLVAKIXNVELVDGSDYFRWXLTKSGLFSVRSLYLHLMDTQTPFXHRKIWKIKIPLKIKIFLWFLQRGVVLTKDNLARKNWKGSQKCICCNGNETIQHLFLDCPFTKTIWRIIFFATNLTQPRSISHMFGTWLSNQNKRIRDLIWVGVAAMXWAIWRCXNDVVFNKMKTNSIMQVIFRGAYWLRFWAPLQRDETAEDALSTISKKLEVIALEXSNKGWKHXYCLN
>LINE1-4_SBi#LINE/L1 2950-6501 via tfasty with L1-7_SBi_pol, 11 frameshifts. [Sorghum bicolor]
MNPSSILVWNVRGLNRRDRRNSVRDVILSSNADIVCLQETKVANMSQHLFLSVFGSAYDNFVALPANGTRGGVLIAWKGCSCQAVASRVDTYSASVLFAEQEGRNWWFTGVYGPQGDDEKVLFLQELRNIRALCNGPWLLGGDFNLIYQAADKNNANLDRAMMGRFRRFLDDNDLKEIPLLGRKYTWSNERRSPTLVRLDRAFCCGDWENIFPDAVLQSTAAGDLDHCPLILGLKVSTTGKRRFHFESFWTKMPGFRDAVKQNWEAPVQSNCAVERLFIKLQRLSKGLQKWGQRKVGNIKAQLELAKEILHRLEIERDFRALSDHEEWLRKKLKLHCLGLASLERTIARLRSRILYIQEGDANTAFFHQQARYRKKKNFISKLQVGNQVVVSQEDKQKAVDDFYENILGRAEERDYTLDLDALGIQQHDLSELDVPFSEEEVWATIKDMPLDKAPGPDGFTGRFYKSCWSIIKGDVLMALDAIQRGHVFKFRLLNTAYITLLPKKVDAVEVKDFRPISLIHSFAKLVTKLLANRLAPLLPSLVSANQSAFVRGRRIHDNFMLVQQMVKSLHKKKEAHILLKLDISKAFDSVSWSFLLEVLRKVGFGQRWRDLICLILSTSSTQILVNGEPGDTIYHHRGLRQGDPLSPMLFILVMDVLNSLVNYATSMGLLQPLAVQQARHRVSFYADDAVIFLRPYNLDLITIRHLLDLFGHASGLRTNLAKSSVSPIHCSDEELASRQNSLCSIKAFPCTYLGLPLSIGKPTKEVLLPLVDKVADYLPGWKASLMNRAGRLVWLRSVLTAVPIYHLIALDLPKWVIKAIDKKRRGFLWKGHQQANGGNCLVAWEKVQRPLEYGGLGIHNLELLGCALKIRWLWVQKTDDERPWAGLPIAVPHKARALFHVAVDAIVGNGEKILFWTDRWLDGHTMAEIAPNLFKAVPKRTAKRRTVAQALHNRSWVQDIKGARTVEVMLEYFQIWDMVDGFVLHPETPDQFRWKLTQDGSYSSKSAYAAFFEGSIKFGSWRRIWKTWAPPRCKFFIWLVFHNRVWTADRLAKRNLPHPEACPLCDQEDETINHLLVGCVFARQVWSLVLQQLGLLQLSPQPTATRFSGWWKRSTAAVPKEARKGLNSLIILGGWEIWKHRNTCVFDNKRPSVQEVLRAISSEGGLWCSAGASKLQELVLRLPSGA
>LINE1-5_SBi_gag#LINE/L1 2-1980 via tfasty with MIUSE1_TM_gag, 1 frameshift. [Sorghum bicolor]
VFRFSVANQQVGFHIHRLRAFECQDFKIFFHLWHNGGPNFRAEYKSWCREQAAEWIEVSHRKSVRLTGANAIPLLASRSSLPASSSKSMEFSNFQKPLNCAVNSVFKRGAIHGIKRGAIHGTQKNASFLEAGILGPIPDPQRVHKSHGPLLTLCSICLSPAHSRPGCKNIRRCRICLLAGHDSGQCRLVPRPAPFPSIRRDASTSRVHRPSTSLIGGPPLSRDPKIYRSVIEFIREFSGIHSPPSPIVIPWKLSWRLRAPEFIDDVDEESASSPSSSLVSALPFFPQRSCPALFSLIPPSVHISWFLKTPLSATVNPNRGAMAYRFVDPAPFMPTWGQRVLVPGRPTMRRVVTGALKHVNNDLAIAFINPLPQAQLDFPAIRATLAEFLNVQMGIPYHSIQPCPFGQAYVTFSRVSHRDAMISNGPHVFGNTQISFIPHDKAWNNRTAIFTHEAWLMMLGLNIDAWSYTLVEKAVSSFGKLIVWEEDHNNMARALVKVRVSGLDEIPWFFNFSEGETSESDSWTVQCEIISATMLGAQAQDEDFPPDDPEDLDPNHFEFFGYGQPGQGPPPPPFGNGNAGNGNAEGWVPWDQPNANNNVAQHPNPNQDEAPPLIPLQQVLLDHGNNNIMRLATMRMVSLRKKSYKSIILLLLTNLKFLIK
>LINE1-5_SBi_pol#LINE/L1 3302-6898  [Sorghum bicolor]
MQVRKWNVLSWNIRGINSDIKWNAIRDRLCANNCDILCLQETKRDNFDPSYLRNFCPPSFDDFVFLPSVGASGGSIIVWNSAILSGTMIFQNAYAVSIEFTSLHTNVTWILTNIYAPCTPQGKREFLRWFKHIQMPDHVDWLIVGDFNLYRSPADRNRDGADHAEIYLFNEAISALGLIELPLKGKRFTWSNKQNPPLLERLDWFFTSASWTLNYPSTSVSTLTAETSDHVPCLISISTAIPKTHIFRFENYWLQRDDFLNQVTLGWTTESHHSDAAKLLTAKFKNLRKVLKIWKLSLSNLKQNISHVKLVLDFLNLLEDFRDLSLVEWNFRSILEDKLISLLQQQKTYWKQRGTVKWVTLGDANTSFFHANATVKHRRSLITHLVNDQGQSLFNHEDKANLIWNSFKERLGTTNFSQVHLDLPNLLQNTVDLSSLIQPFSHEEIDAIVKHLPCDKSPGPDGFNTDFLKKCWTLICQDFYDLCQAFYSENLCLQSINGSYITLIPKKDDPSMVSDFRPISLLNNSVKLITKLLANRLQSVIPSLIHKNQYGFIKNRTIQDCVAWALEYLHMCHQSKKEIIILKLDFEKAFDKVEHGLMLQIMEHKGFPTKWINWMKLIFTSGTSSVLLNGIPGKVFHCRRGVRQGDPLSPLLFVLAADVLQSVLNLACANNRLALPLPLEHDTDFPILQYADDTLIFMQGDVSQLQHLKDILHVFGESSGLKVNFDKSFMVPINISNERLDTLTEVLGCSKQTLPFTYLGLPLSIAKPSVAHFWPLVSKCERRLVNFSSLLSEAGRLQLTNAVLSALPTFAMCTFLIPKTVLKQIDKFRKHCLWRGSNLNCKKPSKAAWPLVCRPKIEGGLGVLDLQIHNESLLMKFLHKFFNKLAIPWVHLVWEHYYSRNNLPSLHRPFRGSFWWRDILKLLHSYKEVASIHIQNGSTCFMWLDNWNGTQLNQRYPELFSYAKSQQVTLSTAVSSTSLEELFHLPLSVEAFQQFQDLSTALQTLHLSQDNDVWSYRWGSTHFSSKQVYKHMVGHSQIHPSFRWLWTSCCQNKRKFFFWLVLCDRLSTRALLRRKGMFLQDYNCVCCSLNLEEDLLHLLFHCPFAMACWYSLQVFIPNSDDIATILESLRTQLGVPFFMEIIITMCWSIWMMRNDIIFRNMAHTIRRCKAVFQKEFALVILRAKARYHPSIDLWLDSFV
>LINE1-6_OS_gag#LINE/L1 6-2126 [Oryza sativa]
MLGLGFMRHPGDRAAAELSRVARWVWMEISSNMLLMSPGVLPAVGCSGGDFLPVLKRDLVGWLDHTRIGDKLKAFPLGGLIYGKGSFSAFHIVPVDLWPLRNSGRGRRLNLFWHPKFELYWNPNSVALQYKYKAQWWPKVRFKVFPEIGLGVVNPVSLFVGSSGSPMAANVGGGDKGIVIGIISHPKPTSGNETDAVILDRIPLKMIKGAAGTSDQGQEHTTAARRGSAENNQVDATQGPTVFTEGDLVEDDEDVVVVNIEDDELQTAGLWTILARFYSLRTPNQVALFDDMRRAWRLRADISYKSLRDNMFIITFSAEGDYDFVIKGGPWIHRGDALLVASFDGITCPSNVPLDVVPIWVRIYDLPLVLMTKVRGEMFGSKLGKVREVDVGDDGRNKHDFFHIRVDLPVKRPLKSQIAIRMTVQGKEVLRRFDLHYERVPHFCFICGFIGHSDRDCNRRSANEEQPFQFSAELRCSPLKPFEKKISKVKAAQTSSVARNLFFRGAGSASSLSSRHKQDGQMQEAIPPRVDAHDGFEFKEREGDTAIDEMLAQQAGKMDVTGDKTQGTSMVVPAGKLAQQQSEKEAPKKTDGDEISASEMIPAMRNLQQQASFGEVSSEEISDANRKRMPDQSGLQIKGRVQQALLEYQQYTGGSNSMHGDIGKAARAVKRLKKAVEGEDTDDMEATSHGAAGKLTGPVIGSRQEQ
>LINE1-6_OS_pol#LINE/L1 2123-6253 via tfasty with OSLINE1_1, 2 frameshifts and 2 stopcodons. [Oryza sativa]
MSCLAWNCRGIGNAVTVRDLCALVKEAGSHIVFLSETRQKIEKVRRLRNRLGLRGFAGVNSDGMSGGLALFWHESIHVEIISMNERYIDAYVRLSVNAPVWHATFVYGEPRVENRHRMWALLNSIKQVSDLPWLVVGDFNETLWQFEHFSLKQRSELQMQAFRDVVQRCDLHDLGFSGVPYTYDNRREGRSNVKVRLDRALADDGWRGLFSTAQVFHLSSPRSDHCPILVKWESCEGVHYEIYWERDPAISEVIAESWGVSGVKQDLSDISQALFRMMSDLRTWSKKKFRNVSREIEKNRKKLSKLLLSNANNREIRRVSDxMNELLYREEMIWLQRSRIAWLKEGDRNTRFFHNKAVWRAKKNKITKLRDSDDTVHSTTKELERMATEYFQRLFTADPSIDHSRVTSLMKPKVTDAMNEELCKTFSEEEIANALFQIGPLKAPGPDGFPGRFYQRNWAILKDDIVRAVQEFFSLGTMPSGVNETAIVLIPKTEQPQELKDFRPISLCNVVYKIVSKCLVNRLRPILDDLVSQNQSAFVPGRLITDNALIAFEYFHHIQRNKNPENAYSAYKLDLSKAYDRVDWEFLEQAMVKLGFAHCWVKWIMACITLVRYAVKLNGTLLNTFAPSRGLRQGDPLSPFLFLFVADGLSFLLEEKVDQGAMNPIHICRHAPAVLHLLFADDTPLFFKAANDQAVVMKEVLETYASCTGQLINPSKCSIMFGQSSPTAVQNQIKQTLQISNSFEDKYLGFPTPEGRMTKGKFQSLQERLWKRIMLWGEKFLSTGGKEILIKAVLQAMPVYVMGLFKLPESVCEELTKLVRNFWWGAEKGMRRTHWKSWDCLIAQKLKGGMGFRDFRLFNQALLARQAWRLLDRPDSLCARILKAIYYPNGSLIDTSFGGNASPGWRAIEYGLELLKKGIIWRIGNGKSVRLWRDPWIPRSYSRRPISAKRNCRLRWVSDLIDQSGSWDTDKISQHFLPMDAEAILNIRLSSRLEDDFIAWHPDKLGRFSVRSAYHLAVALAHVDEGSSSSGNGNSRAWNALWKCNAPQKVKIFAWRAITNSLPTLENKKKRKLEVSDICTICGVESEYVAHALYRCPHARxFWEAMTVDMKLNPLSNIRNGDPKVILDLLEQSQPEDQVMLLMVLWRIWHTRNEIVHGKPAPGMLVSKRFIESYVLSLAEIKQHPQASPEKGKHVVDVVQKKLHSIKRSREPVPDKWLKPLPGSMKLNVDGSFQESDGKGGIGAVLRNCTGEVIFAACGHVDCCSSALETELLACRDGLALALQWTLLPIVIETDCLAMIHLFRDATGAKSELAFLIREIDSLLVGNRDISFSKCLRSQNHISHYLANKGRCDKITQFWPDNKCTFISQFICEEANE
>LINE1-7_OS_gag#LINE/L1 664-3400 via tfasty with LINE-05_OS_gag, 1 frameshift and 4 stopcodons. [Oryza sativa]
MARLGDPSTRPEEEECFIPTPHVTEVELKEWESTAVITWAAKAPASTTPKEVEAIFMEELHLREGEVVVSRHHPEAFIIKFAHQRHCVEALKRGSVKRHGIELHFVKWRSLKSALGVALMFRVRLYLDGIPHHAxDADTVVRVVARTCALESIETSLLHPPDTRWISVWLWTGNPSSIPKRVWLIFTNSTRSKKLDTVTVSERPPEPGNTGVKYCVYVHLEEIHDYTSAMVALDDSAAITPAKRRLLPWHLGVADGEPVPERVFSEFPHHPTPPRVEEDRGSRIRGDHRDVDHHDADSRVADCPDADHxGHGKEARDRRDHGDEGRGDRRxQYNDDHPEFERGHGWRRHDDSDDDDDDRDRRSGRGRETWRGRDAAKPSGLNGLRERDRSPRRRDWGEGSSYGGRHRAEALRPVSACPPLTLLPLTPSPTPQVANLQFMFALRTLNAQDATKNITDVHKHQPLSGEHAIVAPVADFNSFLAKAHNLDAALQIDWTALQIGSPAPLTASVREHDKGNEAWSMAAMGQCSGPEEMGRQHVDIPVRCAFDCINHAIxVRAPASVIDDLEQALAKMEIAAAAATPESCRGMSPPPSLLRSRQSAHGPVTDHGLGQVDGVEARHGPPLIGPAKVVGEQAGQLPVGPPGVGSPGLTRQPSPTGLASKGEEDEAIFKTRAHEATEKVAAAPLPGTHNRTPPALTQATGGSSPTADHTSPHSDRLGNLFKAVTPPLLDRLSSTPPAKSRPILAKRCRIARLAEYCSTNPRRSSRLAGKSKMPPMQKCHRVLMKRLGLLRTDASLDEVLAEYVAMFNGPLPPHIIAALTSIFDLTTTTTAMVTSHRRKPCSRWWEKVSLISPMRSTKWRLSLLAAAWSKLCLHVSSSPPYHVVYSTALLCFSFVAPCGALDAARPFAMRWA
>LINE1-7_OS_pol#LINE/L1 3629-7180 via tfasty with LINE-4_OS_pol, 2 stopcodons. [Oryza sativa]
MVVQNFELLSWNVRGLNSPAKCSAVHDFMAEINCTIACFQETKLRAMDDGLARFLSGYKLDSYAIKPARGTxGGFLLMWNSNLVDINEVRLRRFSMTARVNLLHNSETFFITAVYGPTRHREKDAFLRQIKRLKLADREPWLLFGDFNMIYRACGKNNNNLNLRRMSRFRAALEHCELKEVHLQNRRFTWSNDRRKPTLVRLDRFFCNENWDLGFGHHILHALSSGTSDHCPLLLTNPQGPRRLRSFKFENFWTSLPGFKDEVQNLWCQDSTHHEPLHRLVDKLSRTAKALKFWARGICSEAKLKYLMALNVIHRLDVAQEHRDLTQAEYRLRLGLKRRLLGFAVIERARKKQASRITNIKEADANTKFFHRKINARRRKNHIHRLKKHNCWAVTHEDKESTIAEHFRHVMGRPEPRSCDLNWPILGYTPIDLSGLDDPFTEVEIHKAIKEMPIDKAPGPNGFTGKFFKSCWDIIKNDVVAAFNALHDSRNTHFNLLNSANVVLIPKKEGAEGIGDYRPISLVHGLGKIFSKVLAIRLQPLMQSLILTNQSAFIRGRSIHDNFMYVRNMVRKYHRTRRPILLFKLDISKAFDSVRWDYLLTLLQNRRFPPKxREWITGLLSASTSKIILNGTPGEAIKHGKGLRQGDPLSPLLFILAIDPLQRLLDKATELGAISKLRGKAVRFRTSLYADDAAVFINPNKEDVKAFTDLLGRFGHATGLCTNLQKSHVAPIRCHNLDLDDILMDTPATRANLPMKYLGLPLTTSRLRKTDLQPLYDKSMSRIVGWRGRHIGLVGRSTLVKAVLTSQPVFLLTGLKASKESLKVLDKQRRKFLWAGGEALTGGECEINWTRTCLPTASGGLGILNLEKFARALRLRWLWHEWKSPGKAWVGSGMPCDDTDKLLFAAATTITIGNGAKISFWESSWTQGRRLKDVAPLVYAASKKKNRTLQQASQANQWLLDLDLPGTAGWTTNLIDQLVGVWSAVQAIHLVAHEEDNITWKLTNHGEYTASSAYNAQLLGTTATNFNRLIWKAWAPCKCKTFAWLIIQNRVWTSDRLATRGWPNGSICPLCRQTQETALHLLAECRYTRRVWAALAEWATCEQLNPSQWRQTSTVLDWWEATANIQETPKKALRTLMLLVAWEIWNERNRRTFQQKELSATSLLAKIKEEAKTWALAGARSLNS
>LINE1-7_SBi_gag#LINE/L1 337-2610 [Sorghum bicolor]
DRTPIQVDVQDEAGWSPVRPKYWWRRADFTPQTKVRPLPSRVPSPRPAMVDRLRGKCLRCLAGGHSAAACRDPVRCLRCGRSGHKSYECKAPSQRRHQGLLASPPPARPPRSNSFYPHCLPSSVMALAGDPELRPQETSAVAASNSAMDDALAHFSTHAVVACLCRDNDDIGPDQVKRALCSRLCIREADIKVVRHKPEDFFIVFEHPHHRDAALDLHRLPAGNIVIRILPWRVLPYGDHCDLRHHVRICLEGIPVHAWNESIAKRAVARSCDLDYVDPRSLRRDSRALCPDDTRALCLWAWTYNPSDIPKVTWLTLTGDVVTAHDGPSPPKGRRGLTFRVLVHLDLIESPVDGHGTTSTRELTWHYGVVDGERRPRERHASPPPPDARHRRHRDDEDDDDHRGRRRDSSRNWGSRLLRSLSRAPARERERSESRHGRRHDDRSHGGHRRHDLLEVANGVAAAHLHRPRDTNDYAASPTTRGRSRERSNRRRKEGQRRSPARLEPREPSSQNRRQTCNPRCSPGSTNRHNDGSPSPPTVTESPPRAIPPSPDNSPMRRDVLLTPDGTLTQPAHPPPLVQPALPQRPAVIGCSPARRFRPGVVYVRRRPNQTASRQPRDTQSSPPTELDGSRLEEGSSMDPATLTFVRAVSRPLPPALLQAPPRTAAQARRLPRRTVPATRKSTRIAAKNWPRGDAHAKARQVLMKKLGVPEDKALSPDDRFLQYLGLFQGPLTNEAIQAMTALCGLDGDDGIVTASQA
>LINE1-7_SBi_pol#LINE/L1 2966-6508  [Sorghum bicolor]
MAQINCQLLNWNVRGLNDDARKDAVNELVRDTRATIVCLQETKLQLVDQHTVTRTIGAKFANSFTVLPAQQTRGGILLAVNEDFFDLSNILLSSHAVTATITMRADGLQWQITVVYGPQGDAQKLQFLQDLQNIPRPDHDRWLILGDFNLIYQAEDKNNSNLNRQLMGSFKSTLDVLGLKEIRLNGRRFTWSNEQDAPTMTRIDRVFCTPDWELLFPTCYLHSLPSLMSDHTPLLLQGELDYRHAPSFKFENFWTAMQGFQETVHEAWNKEVFSALPLKRLHIKLSRTAKAINRWRKDKVGDTKLQLAIVKEILLQLEAAQEFRALSDQELQLRRQLKTRSIGLAAIEKARIRQKSRLTYIRCGDANTKYFHIRASSRRRKNYIHCLHTDEGMVFAHEDKEKVIQDYFSSHIGSSMPRQSSLDWHSLGYTPRDLSDLELPFTMEEVKSIIDSMPPDKAPGPDGFTGAFFKASWEIIKFDIMAALNSLYAMNSQSFHLLNSANIVLLPKKSDARKVTDYRPISLIHSIAKIFSKLLANRLANKLDSMVSNCQSAFIRKRSIHDNFLYVQNTVRKMHKLKMPALFLKLDIHKAFDTVNWSYLLEVMQALGFGQRWREWMSILFNTAKSAALLNGHRGPTFCHGRGVRQGDPLSPMLFILAMDPLQRLLDLATEHGVLSPLPPAAARWRISMYADDAAIFTNPSRDDIQALKVILQIFGSSSGLHINLQKSSVHPIRCNEVDLEQVLSCFPGVRGSFPCPYLGLQLHTRKLQKVHVQPLIERIGKRLPGWKGKWLNRAGRLTLVSSVLSSMPTYHLTVFPLAAWAKKKIDKIRRSFLWKGEENANGGHCLVNWPTVARPKDLGGLGILDLQKFGRALHLRWLWQDWTNESKPWVGSEIPCNEEDRLLFKASTSITIGDGAKARFWHDNWLDGEAPKNLAPHLFQLAARKNRSVQQELDNDRWIHFLSNRINTTEHLEEFVSLWIRIQAIQLQPGVKDSIIWRWTADGCYSTRSAYRIQFRGSYATFKSDLIWKARAENKCKVYTWILVQGKILTADNLQRRGWPHQDRCVLCNGPLETCLHLSLLCPYAKAVWNHILNWEHFDTQLTQFHQDPSSIKSWWEDAVTKIPREQRRRFNGLVIYTCWNLWKERNRRIFNNAYEAALQVASKIKEDIAQRERAIQRAG
>LINE1-8_SBi#LINE/L1 2968-6510  [Sorghum bicolor]
MAQNNCLLLNWNVRGLNNNARKDAVNELVRDSNATIICLQETKLQAIDQAXVLRTLGANFANSYAVSPADNTRGGILLAVNENFFDLTNVLLSPHAITATIXMRADGVQWQITTVYGPQGDDQKLQFLQELQSIQPPSHGRWLVLGDFNLIYQAQDKNNTNLNRRLMGSFKSALDNMNLKEIRLNGRRFTWTNEQDNPTMSRIDRVFCTPDWEILFPACFLHSLPSLMSDHTPLLLHGEMEHKKEPSFRFENFWTAMDGFQETVQEAWDKPISSSNHLKRLHIKLSRVAKALKKWRKEKVGDTKLQLALAKEILLQLEVAQESRALSPEELDLRRRLKIRSTGLAAIEKARIRQRSRLTYIRTGDANTKFFHMRASARRRKNYIHCLHTNDGMAFAHDSKEKIVADYFSNHIGSTAPRQLTLAWQALGYAPQDLSELELPFSNDELKKVIDSMPIDKAPGPDGFTGKFYKSCWGIIKEDILLALNSLYMMNAQGLQLLNTANIVLLPKKGDATEITDYRPISLIHSVAKIFTKLLANRLAPRLDAXISNCQSAFIKKRSIHDNFMYVQNTVRTLQKLKMPALFLKLDIQKAFDTVNWSYLLEIMQALGFGPRWREWISILFRTSTSTPLLNGQRCPDFGHRRGVRQGDPLSPMLFILAMDPLQRLLZLATAQGILSALPASTAKWRISMYADDAAIFTNPIKSDLDAIKMILHIFGSASGLHINIHKSSIHPIRCQDLDLDQVLADFQGARGTFPCRYLGLQLHIRKLQKVHIQPLIERIGQRLPSWKGKWLNRAGRLTLITSVLSAMPTYHLTVFPLATWARKKIDRIRRSFLWKGEENANGGHCLVNWPTVARPKDLGGLGVPDLDKFGRALRLRWLWLQWTDSSRPWTGTDVPCSREDRLLFQASTLITIGDGNKARFWTDAWLDGEAPMNLAPSLFLMVARKGRSVRQELQNSNWVSRLXSRINTAEQVEEFISLWLRIQTVQLQZGVNDTITWRWTADGSYTTRSAYRIQFKGAYSTFNSNLIWKADTENKCKVFMWILIKEKILTADNLQKRRWPCHEHCVLCNGPLETPVHLSFNCAFAKAVWNQVFIWEGINTDLLQMQDEPNHFRTWWEQVVPQISKDQRRKFNGMVIYTCWNLWKERNRRIFNNVFQSXXEVAARIKEDIDQRRRALRTFG
>LINE1-8_SBi#LINE/L1 504-1862 [Sorghum bicolor]
LDEKEWSTVRPKYWWRRGEFTPHRRRPAPYAHHLPMAKTLQGKCLRCLGKGHSAASCREPVRCINCGRFGHKAQTCRSATLRRAQHYRPLPPNNRPPKPSPTPPPHAKRLPEAMAQLGDPEYRPQETSAVAATNGTMDEASVHFSAHAIVACRFQDRDDIGTDQVKRAICSRLGVRDADVKVARHKPEDFLIVFRHPHHREAALHRRSLSVGSGQIKLLPWRTLPYGDHCDLRYHVRLCLEGIPIHAWNESIAKRAVARSCDLDYVEHRSLRRDDMALCPDDTRALCLWAWTYNPSDIPKVTWLTLTGNAVAAHDAPVPPRGRRGLTFRVLVHLDLIESPPDDFGQTSTRELTWRYGVVDGEREPRPRHASPAPAPRASRRDNDDDEDRGRRSDKGHNWGARLFRSLSRAPTRERERERSRSRHGRQQGRQTHDDRKRHQAVNTVDDRKATKQ
>LINE1-9_SBi#LINE/L1 26-2184 via tfasty with MIUSE1_TM_gag, 1 frameshift and 4 stopcodons. [Sorghum bicolor]
MLNPSRRLTNSPTMELSGLSFRPGKVVEAEILRKYGLPVCPVPPSPHFFLVLSVGRCKFKLDERSASLILQSVIGGTAELFNVRSLGDRVFRFSVSSQVVGFHIYKLRSFEGSSFKIFFNLWHNGGPRYQEEFARWSAEEKAKWTTVSRNKHQPPARPPPRTGHQPLVRPPPLTGANSVPVRAPAPGRPSSFSNSGVNAHKVTFIRNKSANLAPLNSELNANIHKFKYAGILGARPNHQLSGPLVCSRCLAHDHQRPSCRNPLRCHSCFRFGHSFGNCVFPPRLMPPALVQRQRNSFPSWKHRPTKSMTDGAGAPASTQALLCTQAYDRWDQxLFSPSSFRLPCxILSLPSRSISSSPNYGPLDPSLEALCSGFxRRRRGCPSHHCKLLLPDELSEILLQLWxVCSSGPWHSTSPYSSYLLGAENPNCYCSSPPFSQSSMAFRFVDPAPFMPHGAQRQMINGRPLMRRVVIGHVPERNHDLAIAIFNPMPQGPINFLDIRNILHDFLRNHKGVGYRTMQPCPHGQAFVRFNYLFDKDNLIENSPHQYGDGTITFVAHNRAWNNRSAVMTHEVWLMLLGLDLDLWTQNLLEKAVSSFGQLMLWEEDHYYMSRAIVKVRVSDLDDIPWFFVFTEGSDFVSNSWTVQCEVLLTKMLGQDAQDEDFPPGDDDFDPNQFFYHGFGQPGHGPPPPPPAPQAPFILENLQAMGWDAWPNQPVQAENE
>LINE1-9_SBi#LINE/L1 3435-7032 via tfasty with Isabelle_TM_pol, 1 frameshift. [Sorghum bicolor]
MAVKLWKVLSWNIRGINSEKKWNAIRDRISENNCDVICLQETKRASFDTTFIRLFCPTHFDCFEFLPSNGASGGSIIIWKSSVFSGSLIFQNSYATSVLFSCVHNNASWILTNIYAPCTPAGKKEFIQWFQNIQMPDNVDWLVVGDFNLYRNPLDRNKPGADVADMLMFNEAISALGLVELPLKGQRFTWTNKQLPPLLERLDWFFSSPNWTFSFPNTFVSTLVMETSDHVPCLITISTDIPKGCIFRFENFWLQRDDFMNQVQAAWDTPIYHSDAAKILTAKFKILRKVLKQWNQTLSNLKQNIANVKLILTFVNMLEEFRDLSIIEWNFRKSLERKLISLLQQQRAYWKQRGHIKWVTLGDASTKFFHAQATIKHRRNFITRLDDDQGSSFYSHHEKAELIWLSFKERLGTSNPSPLHFDLPSFFVNNTDLSSLVLEFSRAEVDDVVKQLPSNKAPGPDGFNTDFIKHCWPIINTDFYNLCDAFYDGAVCLQSINGSHITLVPKKDDALRINDYRPISLLNISVKIITKLLANRLQKKLPALLHKNQYGFIKQRTIQDCIAWALEYAHTCHQTRREIIILKLDFEKAFDRIEHSFMLKIMEHKGFPSKWLQWMNLIFQSGTSAVLLNGVPGKTFHCRRGVRQGDPLSPLLFVLVADFLQSILNDARMNNRLSLPIPSLSDQDFPILQYADDTLIFMNGDIDELNNLKDILSSLADSSGLKVNFDKSMMVPLNVSEERLDILASTFGCSKGSLPFTYLGLPLGLTKPSVADFWPLVSKCERRLVAFSSFLSEAGRLELTNSVLTALPTFAMCTFQLPKTIIKHIDKYRKHCLWRGSDVNNKKPPKAAWQMVTLPKDEGGLGVLNLSVHNESLLLKHLHKFYNKANIPWVQLVWEKYYAGDKLPSQSFSFRGSFWWRDNLKLLPSFKDMARVSIQDGKSCLLWHDIWNDVPCSEAFPELFSFVRNQNSSFYWAANTQDFYDLFHLPLSPEAFAQYQILQAEVQNVTLNNTPDQWSYLWGSVLFSSSRSYKHLIGHHQIHVAFKWLWKSCCQNKRKFFFWLVLQDRLNTRALLKRKHMSLPDYHCVLCNSGIDEDILHLLFHCPFSLACWSSLQLIIPNSQDVGFIVESIKRQLHLPFFMEVLITMCWSIWSMRNDVIFRNIPHSVNRCKQVFKKEFALVILRAKAKYQPHIDLWIQSFV
>LINE1-10_SBi#LINE/L1 3570-6205 via tfasty with 50931797_Osa_pol, 9 frameshifts and 4 stopcodons. [Sorghum bicolor]
MGVLVRNRITNHRFWVMNVYGPAQHDLSEDFXQELSDFCARESLPVLMGGDFNLIRNNKERNQGQGDQRLMDLFNDFIGSFQLREIFVSGAKFTWSNKQKNPTLVKLDRILASTSWEFKFPTCFAWAKARVGSDHCPLILDTGEEVETRPRYFFFDEQWLQGEGFLTWFKIDGGFQRCLYQTILWISGMGACQSLRKYLRGWNLQLMGDQKRIKMIxQENSRVGxYSxTRLLSMEEWEERIELEDKLESSQIRGIYWKQKAGNKWVLEGDANTHFFHQFANGRRRKNTISFLDSDDGEIRGQKEITDHIVDFYKNLFGPSDPCSMNLEKLLAIWLCIYxGEKTDLVRPFGMEEIKGVIMDMKENSAPGPDGFSVSFFKKFWELLKGYVEMFQDFREGQLDIKRLNFGVITLVPKVKEANTIKQYRPICLLNVDYKCFTKVLTNRLVPVAKRMIGKNQTGFIKGRNILEGVVVLHEVLHELHTSKALRGLVLKIDFEKAYDRVRWDFLEQVMERRGFPPKWIPWVMSTVRGGKVCINVNGERSAYFRTFRGLRQGDPLSPLFSTVADALGVMLDKAVSKGHIKGVLDDLIPGGISHIQYADDTVIMIDGSDQSIRNLKLILYCFEWLTGLKINYHKSEVFVFGVPQGEKERMANMLNCVLGEFPMKYLGIPISDKHLNMSAFILFPEDDQEIGSLERQTSDFRGETNSTNSCLSSIPLYCMGFYWLQDGVHKKMDSIRANFLWQGAEDKFRYHMAKWEMVSRPKDQGGLGIINTRIMNDCLLVKWIWKILQEPDDLGLEILKAKYLEGGNFFSAPRKGGSQFWQGLHKVKHLFKWGATFKVGNGKNCRFWQDCWLQDVPLKIAYEDLYKMVRDPDVLLLIAG
>LINE1-11_SBi_gag#LINE/L1 272-3007 via tfasty with LINE-7_OS_gag, 2 frameshifts and 1 stopcodon. [Sorghum bicolor]
QNRLLSDLHDCIVPNLISPATAPAPLWVTPPSLHPRFNEFFITNSLCHMLAPRPSRLNVKRVRDAVFVVTVSSEKFAVALALIGSLRIADVHLFFHPSLESAIRAASRLPPLGAAAGQHVQKGSPAVKAAWWLPNNRLHCDEHSSPPAPEAIRLGSVPADLLSVPPGSFLSLPGSGGAARRLVAPAVAALDVPLSPDFNVPQRPKSYVEAARSPPAPTRQVFKTLKPLAPSRACYRCLATDHLVDDCREPVRCRRCRASGHRSNQCKMKLCVLLRAAAKRMRAPTPPKDxRGRLATPSPDPQGSPRAARGRAPVGLPPPPILGGLPPDQHGGLLLLGPPPPVEVLSTQSLRPLSLRTPEHPCVDKFVLPAPCSPCLQPTGAARQASPAGPTIMPAPVPAASDAVEPGVGGVESSAEEYASGELELDSVSSASGSSWHEGRPRHADAWVSPGRDELSERLLFAFIEPPVPALEVSAFIRNALRTVAPLQPVDLLQSSMGAMILRCESPEARDSLRLLGPISLGGSLLHLLKPEDTANRFFRVPVWLAFVYVDWFPIEHWYAEKIKECFSSFAEVAEIDPECLSGDNFGPLRLLLEVNDRLEIPRELRISCKQGVGRSGAVARITPIRVWPREFQLDSRGNLAPFFGPPAPPSSGPSLGPSGPLTSAQQLRPQSHYYSLAFPTGNAGRFASNLQRPFDPLGTSAPSGSXLPLLLPHQALALAFSLARVLNAPSATASSGPGAPPASALSGAVPGXAIRDVRAGEATPCFACSAVRLGPRRGKAGDHLPTPPLSLQAERPGCTCAAQSQGGRKPSVANSAVRRSSSRLAAKAAGASGKFVDTATQAIQRKELLNSLSTCSVSLKKHVTKRNILSRNLLPMSAAELRALVAAAKLGSRSSGDVVDGGNDMVAEAAE
>LINE1-11_SBi_pol#LINE/L1 3181-6802 via tfasty with LINE-7_OS_pol, 1 frameshift and 1 stopcodon. [Sorghum bicolor]
MNTNSSSSFRRFHVVSWNVRGLGDSDKCNVVRNVFSDAKTSFICIQESKLSEVNFFKAQTFLPRPFSSSFVMLPASGSRGGLITAWDPALFTLTSQLSNSFSLTTSFSCNASNIDFTITNVYGPSDHSASAQFLQGIRDTKALVSGAWILMGDFNLVRCAADKSNGLFNSNLADAFNQTIQDVVVSEVDLSDRRFTWTNNQTFPILAKLDRVFTNVPLDLAFPMANLSSMPRPTSDHTPLLLSLASDIPKTDFFRLDNFLLRNESFLASITQGWHQAATCTDAAGQLVACIKAARAAAKVWKRCNRAPPEITQNCQFLIQLFDYFEESRTLSQAEFQVRGLARERLHEEIKAKAAYWRQRSKQKIIKECDANTAYHHARATMQMRRKFIRMVRVNDQEVVSHAGKAEALSNFFKSIIGVPGQVTLIDLDSIYGDSQRPDEHISGRFSECELKQAVLAMNSLSAPGPDGFGPAFYQSAWPSIKQTILAFAEAFYEGVADLERINRSHMVLLPKKPDAVDVNAFxPICLQNSALKILTKALSTRLQKQIPRLIDIHQTGFVKGRSIADTFVYAAELVQTCHKRRRPTIVLKLDFAKAFDTVNWVGLQRVLQARGFDQRWIGWMLRLLDTSKSAVLVNGHPGPWISCKRGLRQGDPLSPYLFILVAETLQRMIREAEQIKHPTDEALPCAVLQYADDTLIVFKADVAGAVKLKDILDQFAAFSGLHINFSKSTLVPIHTSEQIVSDCVQIIGCTRGSFPQPYLGLPLSANKLPVSAFNIYIHKADKFLSSWQADLLNPMGRTVLVNSVLDSLLVYLMSSLQLPPSAIEQMDKKRRAFLWSGDKSGHSSPSSCLIAWIKVCSPKDLGGLGIRDLGVQNICLLLKLLHRLHSPQSSAWAIWVRGRADITTLQGDLHGDHWQTLRTILPLYQAITTVEVGDGSTCSLWNDVWTGDECFADRFPALFSHCNIKTQTVREAKLSGIRSTLVPRLSTMADHELQLAQQLLDQTSLSAAQDKRISDFIKPDDSIDTGAIYKMLKARGQPSDPKATFIWNTWAPPRVQLFMWLLLQRRIQCRTVLFRKHIVDSPICEICNITDETPEHIIHGCSLGKEVWTRLNLQSMISMDMGQLHTLANHTSTAIPELPSFIALVCWQVWKARNAKVFRNEEHSVDRVLLDCKAAAELWQYRIPRAKRQTATQWCTILQMARQGQG
>LINE1-12_SBi_gag#LINE/L1 1436-3382  [Sorghum bicolor]
MGKSVNVACEFCGLFNHASLDCRRMLCEICGFTNHNTFDCKKCLPWNYGPELCATQVEEQSFFFIEECIDSRVAIEKASTAVIKVVEGNANAKQIEFEFMNLIGADTWRWRARPIADKKFLLRFPSAKMVTEWSRIKNLTLRNDAQITIETWSPAVGAKGILQTAWFRVSGIPADQRSIKTLAKIGGLVGKVLEIDEGSRYRYDYVRLKIACRDVTRVPKTAESFLGMYLIDFGFEREVTMESGPKMLKSGITVGDPESQPPAKRTKSGMDAGKSQLEEKNESLSGAGDTSNKGKENDTSKQSQVCWSAPPKVGCGDLTTTNPKSVAQKSFRKRCIDDDGEKVHIPETLEDSDSDSDSFAQKLASLAGLDGVGQTSKNDQENNSKQIWFMNETSEINIKEMSLXKLDDKLKEDDTKGVSVTVNTQSPEIFLSDDTIVNTQESEIMDIDGGTIKGGALPLSDYEVQIEKTVPEQERRRSERLKKITPLTNLEELERNTEDTSFEGIYSNHNSFSVLLDDDISHITSCMGIVVDESSFDTFNLIRDLEKARDDLYQKQIVKNQKPQTDLVEGGLEEDVPLAIEWINDESSESEDFILVESRRKKREKRKSLMLANSQNNRRIIQETPDDLKKKKGKLSKKNVTKNIKKVKK
>LINE1-12_SBi_pol#LINE/L1 3382-7089  [Sorghum bicolor]
MSINGLIWNCRGLRKKGVSTFLKDLISQNRFHFVGLQETMIKDCEEKILRKFDPNKDYLWLYNPSKGKSGGILVGVRNDLYDVGSFQQGDFMLQMNLWDKSNKIKWNLLIVYGAAHDDKKMDFLAELSSFCSRNSNPILIGGDFNIVRFASERNKPHGLTRFTNLFNSLIGFYELKEIVMTGGLYTWSNNQGDPTLEKLDRILVSRDWEDIFPTAMVKRLPREISDHNPLILTSDCHKPLKFLQFRFELNWLDNPEFLGAVEKIWSKHCNARTSLDRIQQKLKLVKQYFKGWGFNLQGELKKRRKLVSEELFELEGIEEEKSLTQEQMARKVWLIKESLQLLDQEESYWVKRCHEQWLLKGDNNTKYFHSIANGRKRKNSVLFLESDGFVIEGDDNLLKHATDYYGDLFGPSEEHNIHIDNSIWDELEKVSDEENSNLTKPFSESEIKDALFQMEKNKAAGPDKIPIEFYQTCWNIVKEDIIQLFDDFYEGKIDISRINYGIITLLPKITDASKIQQFRPICLLNCLYKLITKTLTLRLEKVADKLIHTNQTAFMKGRNIMSGVMVLHEILHETKRKNQVGIILKLDFEKAYDKVKWNFLFSCLAARGFNDKWCKWIEQVVSGGTVSVKLNNLTGPYIKSYKGVRQGDPLSPILFNFVADGLSRMIHKAQSNNLFSGLIDHIVNKGVAVLQYADDTIICLEHNLEGARNMKLLLYMYELMAGLKINFYKSEVLVINDKDNWANVYAEIFNCQIGIFPIKYLGVPVSPSRLHVLDWLPLVEKNNKKLDPWKGSMMSIAGRTVLINSSLSNSPIYHMSIYLLPKTIITKMDKVRRKFFWQGGGTKKKYHLLKWAKICKHKKKGGLGIRDLRKMNISLLCKWWWKLDTEKGLWQDIVQYKYLRKKNICTVKHRQNDSAIWADLLKIRHIYLQGRKVKIKNGDKALFWKDSWLFDKPLECLFPDLFSICMQPDISVSQMKQRSVNFTRWLVDNMRLDWNNILRKVEKITLTDGEDMVNWKFDKKXCFSVKSVYKFLTTNDAGIYYKNIWKGKIPAKIKIFLWLVANNALLTRDNMVKRKWTGDPSCLFCECNESVSHLLFQCSLAKAVWAVVAHCLGASNVPRNLNQSWAWCEQWLPYGTKFHAIGIAAICWAIWKTRNSACFEDKVVTSPIHVICYACSLMEYWAGLFLEEDKEQLIAGANTMLKIAMQLVSREVRDQKHLALEDNKSTDEEDAPDGQK
>LINE1-14_SBi_gag#LINE/L1 407-3136  [Sorghum bicolor]
MISNSGFQLDSGSAALNDDFVLGANSQIPRNSPSEVSVALHQSLTPQDQVQNDSIGLSNSENSLASSADASCQSFTARDFVRRVRRLGGCTRCLNLSHICFDCDSEVRCAVCFNYGHKSKFCFTKRQTKLCWRPKRPTDLEFTEHGGQPTRDTEGSGAYCDSPSSWGFIHIDRSARLPGSHSSEPVPLPHSTPLPWLDDQGDEDMANFVVHPAPFVPAGLEVEDWARPARGRIVVSGNPPRQHDEYAIITVLPRPHQNELYDTMEDVVQYFEHEQNVRAESSCLSPLGLCLVQFRSPVARQAMINLSPLQLDAMHEIVVVEHDQGLNLRSCPFTRTCWIMFLAFPLDFQTREIISQAVGYFGTIITWTNNARCKSRILLRCKVTHISRIPRSLIVCEGNVVGDNGSSWTVPIFVLSSQQTDHLAGDEDQIPPNGNPHPENDHFLHEDHQQGNQFPGFFEDIGDLNQVQQANLDHGWEIPPPPPPNGNMGWGQWVQQNVDLQQDGELVGENELQNVNNLANIAVANAVANGLMQHPEQPQHSSSVSSDTEAFFRAQGAPITLELPLPDISSNRSAADRALVATGIRVQGFDNDYQIRAITNNLGLHMNVGPTPSVEMLLAELATMTQRLQSFLPMKNPLPADCWNFWPADHSLDTWHLRTDNPRWGNNAEASSSSGYRRPRLHLLREGDFAATGTKLFQDNLSTSNILSRECRDIMLYDQDYALEQIMRNIHPGRNSTNPANMNRTTEAMGSVLPTLDSQMLEDFIDAGYSAEEVEALKANMESYFTPHPTQSRXFDDTPSTKKKRKAKAQTPIVDDQARRSARLKKNEEIQHFQLDREPRRKNGEAKKTVYISTVEDLXTAIINRSLDSEMVANEVEPIPIFTLIDLGVSFCGVPPGELTPNVLQQISEE
>LINE1-14_SBi_pol#LINE/L1 3271-6918  [Sorghum bicolor]
MMVVPHCLSTDSFQWLSMNSRAWNLLCWSIRGVNDSDKWDHIRNKIEESNANIFCLQETKRDFFDLKFIRKFAPKRFDKFDYCPSVGASGGILVCWVSSYFNIVTLEKHRFAIRASVTSTHDLCLWTLVVVYGPCRQPARDLFVNWLYNLSIGDDDLWLIVGDFNFYRSDENRNRPGGNFNDSLIFNNIISRLGLIELPLKGRSYTWSNMQDTPLLEQIDWFFTSVAWTNQFPFSLVLPLARTTSDHLPCKVQIGTNIPKANIFRSENFWFNHPGCIEQISNAWIIPTSCSNSAQVISAKFKLLRRILKLWAKKFSNLAKLIENCNLTIAFFDRLEEIRRLSNAELVFRKMIKTHYCNLLAMQNTYWKQRYTQRLVQFGDENTKFFHAMASERFRRNIICQVSDESGRTVTDHTEKSSLFYQEYRRRLGSSVGISMQFNLQQIVQPSSDLGSLCLPFSKEEINDIILDLPNDKAPGPDGFNSLFFKKAWHIIREDVYRLCTDFYHHRADLKSINYSYITLVPKKDNPETVNDFRPISLLNSSLKIITKILANRLQKKALKVVHSNQYGFVKGRTIQDCIGWAFEYLHQCHHSRREIVILKLDFEKAFDLVEHKIVVEMLRAKGFPSRWITWIKDILSTATSSVLLNGVAGKEFKCKRGVRQGDPLSPLLFAIAADLLQSVINHEMSLGNLLPPFPQDSDVPFPVVQYADDTIIIMQGCEQQLLHLKGILQQVTLSSGLKVNFHKSCLLPINMDSDKATLLANSFGCVVGAYPFTYLGLPMGLTKPQVKDYAPLICRIERRLSASSQFLSYAGRLQLVNSVISSLPTYYMCSLKLPVTIIEIIDKHRKNCLWRGSEFKRKGYNLAAWDLVQRPKSKGGLGVINLSLQNNALLIKHLDKFYRKDEIQWVKLIWKKYYVDSVPHLAREKGSFWWRDILRLNVQFRGVASCSPGRGDTISFWEDIINGQVGAEVFPNLYAYANNPKVSLWKLRNSGDLLHNFRIPMSRQAYNEFLLLQNAVSGLPPVSPHVRDVWHFIWGTQSYSSHRFYQHHFSSLQPQRSVVWIWKSKCLPKIKFFGWLLLNDRLNTRNMLRRRNKFLEEGYNCVLCQNHVEETLEHLFFDCPAATARWFAIGIAWDDAPSLHERIYRAKDVFQGPLFMEVFLIAAWCLWNERNGVIFNKKVPSLGSWKDAFKEETKLLLYRIKSSLHPTILSWLSAL
>LINE1-16_SBi#LINE/L1 260-3196  [Sorghum bicolor]
MPSYLEAATKGAPRQAPSPADLPGGAPADSQGPGETVAEASHGALSKTQARRKRRARTIARLKGEAEGRTASQTAKLTGAAAPGQRIPATQRVGSQAAQRATTHRRLGKQRRATTPDRDGWQLVLHRDEDRPPPRKRKERTPPPRGIPPEYDGRCLNCLSFNHKIATCNRPRLCARCRSPRHLAKDCKRPPVLAAAGGAPDSRFVRARRGGSSTPQGSAAERAVTPPDRPRPRILDDSCEDPCSEFADGVPPGHPAFRPREAECYIQRDDAVNSAEASMQLALVAQPSGDPGHHTTSEVLLALVAAAGVRAEDIRVKKFFPQRFIVLCASEAIKDRVLATSPAPFGVSPLILLPWSRVANADLTTLYYKLTIELEGVPPHVWREETVAKILAPYCWIQEVEAVTAVADDLSAYKLTAWTANPSNLPKIIWLSVAEPPADAIQGEGFRFRGTTPFLNKKDMLRYKVIVHLRSVRDFDPPTSSDDSSSSDDPAEEGRNRKRHRDARGAGVRLHPFPCHRGTPDGTPPTSNAIGDHGRQHPAGLKPRRRVPATERVGPNAVPRVAVHDRLGTRGPRQRVPATSRVGPNAQPRVPAKERICFGQQTQHGPKQRKQKWQEVKKQPLRPAWQPKTQTRPDAGRQSSGTTTNSIAAASPAPDAAATYQKGESSTSIVATPMPEQDKQEQMTTVHLQMECKAHQHDDTSEVQPIASEPALQPAACTPEHQPAARDVLREGTATREGAPGELVPRDTQAAALGAAPRCCTQAPSVACTGPPEKIGLSSTTHLPFLEAQDKQTEPAMGLPELEPTEAARSDGGRHEQAIGQLAEEDREHSLVPDSEQGADQNTPGRNALGAKPAATPKSTPSAQKRFKVFARRVKKAKTSPLLSKPPPMESTTPRPQIKRSRRIAAQSLSRIPTAKRGEYLVLKRLGHASALNEESAPGKFEALFSGNPEDEEALRELFPVGCLDGHSRRRRRAPRSRP
>LINE1-16_SBi#LINE/L1 3232-6776 via tfasty with LINE1-42_ZM_pol, 1 frameshift. [Sorghum bicolor]
MANTTVICWNVRGLNATARRDNVRTLTADVRAHIVCLVETKLSTVNHWLIASMLGNNYRDFAYVPAASTRGGILIAARFPEVELKEPTIGCYSCTVKIVPAVGDPWWLSVVYGPQEDGDKSLFLEELEAVRDHCPGPWAITGDFNLILDEEDKNNARINRRMMRAFRHTVANLQLLDIHLHGRRYTWSNERENPTLVRLDRVLVSLDWEGMFPACHLQALASDASDHCPLLLQTNLAIHPKPRFHFEAFWPKFADYQEVLQQAWTCDEVILDPIVRLDFLLRKLARELRSWAARRIGIIREQLLMARTIILKLDQIGDTRQLTDSERALRSDLKYKCLGLSSLDRTIARQRSRVRFLADGDANTKFFHMMARGRRRRNMITRLRVQGAFTADQKEMEQAIHDHFMGVFGTAGQSDGTIDFQAIGIEAQDLEALEQPLSEEEVWNAIKELPPDRAPGPDGYTGAFYKHSWGIIKPEIMAASTPCWFGDCRSFGRLNGALIVLLPKTAEACEPAHYRPITMIHSFAKLISKILALRLAPKMHTLISPEQNAFIRGRSIHDNFKYIQRAAVMLRKKKRPKILLKLDVAKAFDTVLWPFLLDVLQAMGFGVRWRRWIATLLTTASSSILMNGQPGKRIRHRRGVRQGDSLSPLLFICAMEVLGRLFAAAREEGVLRSLDNDGIRFQCSMYADDVILFAYPDADEAAAIKGLLRIFEEVSGLKTNLAKCSITNIYGAEEAIADLQLILGCQVAPFPIRYLGLPLSTAKLPKAEVRRTIDAVARRLPACQGPLMAKSGRLIWVKSVLAAIPTYCMMADGLPPWARAEIDAVCRRFLWCGKDGDVRGRCMVAWKTCTRPKELGGLGIPDFKLVNTAFEVKWLWLQSSDASRAWSELPLKQSAEARDFFRASTQTIVGNGRGTLFWLDSWIDGVSIRTLAPTLLKFVPRRVANRLTVAEALPDRHWVRTIGGGVTAPAAAEYLRLWHAINGITLNGNQDRMIWRWTSDGGFSVQSAYQALHLGSHPIPGCVRVWEVWAPMRVKLFLWLAIRRRHWTADRRRRHGLEARSACYLCDQQGETIDHIIVECPFARQLWVDVAAALGCHIQEQPAGAIVEWWEVWRGLWPSEYTRGADSLLALIAWELWKERNARCFRGANTQLSAVKDTIRGQAELWISAGAKNLGRLVQRIG
>LINE1-17_SBi_gag#LINE/L1 126-1679  [Sorghum bicolor]
MIFPGLSFXEGAKVQAEVAXLFSLPITFPELVPSSFALVAAFGRCKFRLDASSVGHLLQAAIGGXAAHFRVSHLGGRTFKFFVCSRRVGFFIVNLRSFSCPSFSLTFHLWGNGGPDWRRELRLFELEEAXSWSPAVASRRGQXNLPPNQLPQPRKXFADAVRLGPVQKLTGANAIPLGRRSAFLRLQRPRSPLLPSAGXLGARSNGGRSSNGGSTGSRNSGPRDKXAXLFCPRCLSSGHRRVDCRRPLKCYACMQWGHAEFYCRSRPAVKTGKHAGNSNRPAPRAGWANRAETGPYRTPDLNLTVFPEPVSPEQQLWAAGEAAPRQPITVLPEGGGGSPSLTLGLALDPSPFTPHSSPSTVNPTAPSPSDQLRPAVVHHSTLDMAYQRADPRPFIPEGFIWNDVQDRVFMSRAVAPSRPPAMNEDLAIATFSPLPGNELSFAIIRNTIRAFLAQRGVQYHAIMPCHLGQAYVRFRHAYDRDNMVQLSPMVFGNIEIKFVKHDQGRTGGQLILMMMSGC
>LINE1-17_SBi_p2#LINE/L1 2049-3845  [Sorghum bicolor]
MFRALVRTCSTKDSNRVRKKISRDKSFRTPPELVQHGQILLAPLQHNPIINPANSWMGWPNAPAQLQAQAAQIVNGLEGGPDLNLQEQINLNDPSLDPFEVIITPSLSAQPNDFLNLNEVRGLMEEYIPQPVVNPAILEQQQDHNNVMGFPLPPLVDVLGEEVPLDQLLNGNEEEEEDQQTHASPVQAVPNTNEPDQAVGFDGTEQVISDPSAQGGALPELVRELMSQQPQQLSETCMLNQAQDSVPDQFQAQLQNYDGTVSDQLFLAQQNLSPHSRAHNTVTGLAQNGVNLSPGKNAEQEGLATLESLAQLNSAPVEPVGSKPIDTAPEKDSPDLLCKEDISIALPENLDSLEQSQEPNTQIRQEMEQFKESVTMMQQEMSRAADSNKLWSRFFCHNSPGNLTVQIPANWANFFTVLLLSPTHFSWARDIVTSELMNLLHNPTGSTPFSIPDTCPNYVPTHCLTDTGVHQPIPRLVEEVQDXEKEPKSSSKKRTSKEPLLSDKEVRRSERVKNKANGFKSPSCSDKRCLSCSPAPPTLSVKLMQTLGSKLGGLSEEELQEDNLNKKKLKTLTVERKKKTVKGKGVAEEGPTKAMEIED
>LINE1-17_SBi_pol#LINE/L1 3961-7577 via tfasty with RILN8_OS_pol, 1 frameshift. [Sorghum bicolor]
MNQTNSRNWVVLSWNVRGINAQWKWNAIRDKVVESACDVACFQETKKEVLDSTFLRNVLPASFNCFEFQPSIGASGGILVAWKDSLFDGEVFDLHTFGVTIQFKSKLNNKIWFLTSIYAPCAPDRKEEFLNWWKSLTLPNDSDWISLGDYNLIRDQQNRNKPGGSYQEMYMFNEAISSIGLNEIKLSGKKYTWSNLQDSPLLEQLDWVFVSSTWLNSYPNTTARLLTMQPSDHNPCVVNISTDIPKSKVFRLENYWMHHNHFLPIIQNAWSLPCTEQDPAKRISAKFKVTRQVLKKWQNSLPSLKTAIANVKALIQFMEVLGEFRDLSLQEWNFKQILQDKLLNLLQQQRSFWKQRGNINWATLGDASTAFFHANATVRHKRKYISQLTIQNDLIVTSHKDKQQAIWDDFKSRLGTTEWTNSQSDLNFFINSVDNLNCLELEFTTTEIDAVIRNLPNNKSPGPDGFNNEFFKQCWSIIKQDFYDLGRAFFQGSLCLRSINSSHITLLPKVDNPSSISDYRPISLLNTSFKLLTKILANRLQPAITKMVHQNQYGFIKTRTIQDCLAWTYEYLHLCHHSRKEIVVIKIDFEKAFDKIEHQAMIDIMKTKGFGNKWIQWMHLIFSSATSSVLLNGSPGKTFHCKRGVRQGDPLSPLLFVLAADFLQSLINKARAMGLLNLPIPMEHNLDFPVVQYADDTLIIAEGCTRQLFFLKSLLNTFFLTTGLKVNFSKTMMIPINTPPEKLETLSKTFGCQIGELPFTYLGLPLSLNKPRAQDFMPLINKCQIRLSGLSSLLNQAGRLELTNAVFTSLPTFYMCSLEVPKAVLKQIDKFRKNCLWQGGEVNARKPPKAAWKMICLPKKDGGLGVLDIRKQNEALMMKNLYKFFNKKDTPWVNLIWNKYYRNGKLPNHTKKGSFWWRDNLKLLPSFKNLTNITPGVGDSCFFWTDSWRPQPLVSEVPELHSFAKNSTITLQKLLSTSNLAGLFHLPLSQQALCQFQWLQQECQNIQSSENNDKWCLKAWVSTSYSSAKVYKELIIHQNVHPVFKWLWKSKCQPKHKVFGWLLLKDRLSTRNLLRRRNMALDNHNCVLCQLNVEETTLHLFLDCTFAQECWHWIGISIRNNQTFQDLATDLRANHQTQPSWIMTMAVLICWSIWVTRNNCIFNNTQPTSQLCRQNLVKELRLVKYRVKKEDQALFEGWVKGFLHEF
>LINE1-19_SBi_gag#LINE/L1 26-3148  [Sorghum bicolor]
MADSAPAVPLQPQILRRGEPIPQIHPIPVALHTSNGPPYTDDSASSPDMGDRSAPQFETPPPPPPFHTRRSELDDDLVIPATSEATFLQTAHPSYADIVKRHKTEVKEAHLPRRPTARILQSTITTPKGSTYYGRGSADEPSRRLRTDDAPRGRHDDPSPRRAALHRQPAPGAFNSTEAEWFEARVKHWWRKLRRGSTDEALRCRRASNRASRPLQGRPPAKSAVSSPALRAFRLKTAGKCFKCLASDHRAASCRDPVRCFRCLGLGHRERDCRRPGTQRPSIPAQRACKEGLPPPPPLPLPPPPRAGQAMAMLGDPETRPDEDECLIPTSFATEASRREWEDTGAVSWAMSGPPNTGPREVEAAIRDEFRLRHGEVVVTNHSPQAFLIKFQHRHHCSRALQQGFAKRHGIEIHFVKWRSLANCFGVSLLFRVRLCLDGVPRHAWDDDIVERIIGRRCALESIDTDLLHPAETKTIDLWAWTANPSLIPKKVWLTFTNRAKDAKLQSILVTETPPEHWQQGTKHPVIIHLDEIHDYTASTIDDKGNISPGKRRLPKWHLGVVDGEQVPARAFEEFPHHPPPPRRTHKEGPRTRRPDNRSSKGTKGRYNNDHPDFYMGRGKHHEDDDDYDTSGRGGRDDPGRFSRGDHSGAGGYRERDRSPPRRLWAHGNRQGGRQRASSALEQAVVQPAELQVPAKLPQLNVLQVTEEAELQRLFRAHAMALQGAVQRIVDRAGGHHTRETASLLKSLMYDYIDKASALAGGLGLIQAPPEAATPGNEAWSKWPPQPAPTHQATHATVPVRDVFGRILSTLPPKATVEDNSIAAVEKALARIELSARESPTIQVPQPTSPSHLCNSELSPEQGPSDVALRDQFSTQPSLTPAATTQGDSGGGQQLTSSVVALFSKPTEPLLQQPQHAAAVVPTPACAGPRRRRRQRAFDMSAVRRSARLANARPMSQMQRAQKNLCRKLGLLHDDLEPVENALQDYIAMFNGPLPMDTIAALTEIFNLDTEETNDADDALLRMVGEGVEELRDAAILTAAA
>LINE1-19_SBi_pol#LINE/L1 3360-7073  [Sorghum bicolor]
MPSELLCYSCMPGVADQSSVICLQLCNVPTGCLSCVLYPSMVAQSIDLLSWNVRGLNQQARRDIVHQIIAATSCNIACLQETKLSQICQYDASYLGGYRLRQYAYKPASGPSQTRGGIIILWSDCRVSCTDITIGEFHVSMNVQLKDLNTSFLLTVVYGPSRRRADKLRFLDELKALKPAPSTRWLITGDFNLIYRAADKNNRNLSPRLMRHFREALDECDLAEISLQNRKFTWSNERXQPTMSRLDRFFCNADWDATFSTHTLNALSTSLSDHCPLLLSDQSGPRTPSSFKFENFWIRLPGFKDVVKNAWDTTLEHHEPFHVLYHKLRSTSQELKAWSKEIISDAKKLFFMAQEIILRLDIAQENRNLTAAELLLRAKLKKRILGLAVIERARSKQASRLSSIKLGDANTKFFHRRVNARRRKNYIQRLRHGQGWAINHDDKASIIQDHFSNFMRHPPERQQDINWDELNLPSHDLSGLDAVFTEEEIKLAIQQMPFDKAPGPDGYTGAFFRSCWDIIKVDVVNAANAFHSLRTSSLALLNSANVVLIPKKDGAEAITDFRPISLIHSFAKILAKVLALRLAPHMSSIVSPAQSAFIKRRSIHDNYMAVRNAIRRYHNSKLPTIFLKLDITKAFDSVRWEYLLTLLDKLGFPSRWQDWIAALLFTSSTRVLLNGIPNAPIKHGRGLRQGDPLSPLLFVIAMDPLQKLLDLATEKGFLSRLRGRTAQLRASMYADDTAIFVKPTRKDILALAELLTLFGEASGLKTNFQKSTLIPIRCEGLNLNEILAGSPTEISCFPTKYLGLPLTPQRLRRVDFQPLVDKTVSKLTIWNGRQINPAGRSTLVKAVLTSQAVYFLTSLRAPKGIIKDIDRQRKRFLWAGAETLTGGKCKVNWPRSARPKYSGGLGILHLGKFARALRLRWLWRQWSPNFDGRLGDETPCNKTDKLLFAASTTLTIGDGGKALFWTSAWLDGQRPCDVAPHLFSTSRRKNRTLQQALRDNNWIRDINIQHQSFSAQHLVEYTHLWQATRRITLRTGTPDSLAWKFEENGEYTASSAYHAQFVGATKNTFEALIWKPWAPPKCKFFSWLAIQNRVWTADRLEARRWPNQRTCTLCRLHAESGLHLFKDCRFTKRLWKEISTWAQNSYLHPSAWPPSNTTEEWWMAISNAPSTSRKGLRSLIILACWEIWKERNARVFEHRESANFVVLQKIKDEARLWILAGAKHLSSCIQRHHLRSVP
>LINE1-38_ZM_gag#LINE/L1 863-2686 [Zea mays]
MLGVSAAQGNGGPASSRRKRWRKKKRXEREDEPALEILAPPPPXQMLPASDXTACVIDWSVQMSIAEDNLKTAAVITVVXSRDISABEIVXVLAPRLEMEXGGLVLRQFSQSSFLAVLPNXVQLDTLVDRFXIIREENFMLSSRRWTRFGGAXGNSLKHLVELELRGLPVHAWETSVVQXLINPHACISQVLPDTLEIRSLEVFRCLAWCCDPERIPSKKDLWITEPDQASAAEGKKALVYPVQIRWVPADLSLXPGAPQPPVGGXDQDKXDTPPSRRRCGDNPPXTQHXAIXEXPGXKTHTQRRPVHDRLGPLRRSDSPRELSXPXVLXDTEARSSQPCXLXDAVVXSXVGNPPXPVPDGXXCLAAGDVLLRREXGCEDAEVIPMTPLAXSSXCPSSGGRRRLLLKTATKQAKFRNPPIAFFRRRRRAPXTPEGAXXPPXSSGDRGAXSSLGALPPAPTAGVAASPLPHGPPPXXXSHGSPGQQBFLRRVSKAVGAVLPLPKXVTGGRRRRQPTXPPDAIRRSRRVAGLGVEQVQHIPKARRTIMKSILAEXDSEHXSQQNLDAYAKLFQAPLSRAQVEALAALFGWVMPDDEGEXVPPGTATLVC
>LINE1-38_ZM_pol#LINE/L1 2687-6217 [Zea mays]
LQPAVVXYXNCFPMDPSLXLFWNVRGLNSAARQDVVRSLVDSXRXDVVCLQETKLVNCDRRTVLSMLGADFDNNFXCLPSVGASGGVLITWRAKLGRIVASRVDSFSVSVKFNPADGXAWWLTCVYGPQGHDRKIAFINELRXIRAACXGPWLLGGDFNLIFRDEDKNNXNINRXMMGRFRRCINDLSIKDIDLLGRKYTWSGANNVQVRLDRVFCSSDWEEKFPNYLLQSSASEDSDHCPLLLGLKDNHTGKXRFHFESFWPRFDGFLEAVXNAWGSVQQSSCPLKTLSLKFKATTKGLQSWSDRKVGNFKLQLELAREILLQLEVAKESRILNVLETWLLGRLKKCSLALASLIRSMARTRSRIAWLKDGDANTXLFXSWSRYRKRKNFIAKIXDGEQLVTSHSDKAEVLRSFYSDXIGTGQQRSRTVNLDTLXXQHIDLQGLEQPXSEEEVWNTIKQLPPDKAPGPDGFTGRFYKACWSIIKKDIMAAIXXVWNKDFRNFRYLNTAFITLLPKKEDAILAKDFRPISLIHSFAKLITKXMANRLSGYMDKLISXNQSAFIKGRFIQDNFMLVQQTARLLHAQKQPRILLKLDISKAFDSVSWSFXLEVLEKVGFGPIWRDVISGLLMTSSTQIXLNGVPGEYIQHXRGLRQGDSLSPLLFIIVMDVLNGLIVKAADEGXLQPLSTRSIQHRISLYADDVVIFLRPAASDLXLVTRILELFGDASGLKTNVQKSSXAPIHCSPVDMEMVTQIFPCKVETXPLKYLGLPLSLRKLSKEQLQPLIDRLADLLPNWXADLMTRAGRAIQVQHVLTATVIYHAMALDLPKWAIKAIDKIRRGFXWKGRKDVLGGHCLVAWGKVTRPKELGGLGISDLQRLNWALRVRWLWLEKTDPSKSWADLPLQSSSTLKSILSTALTTEVGDGRNTLFWRDRWLMGLSVEDLTPHIFALVPARIANRRTVAEGIVEMAWIRDLRGTITWAVLSDFLTLSEVIADFSLSDGVPDKHIWKFSPTGQYSAKSAYDMLFLGSTSFGAFERVWESWAPSKCRFFLWLVXHNRCWTADRLAKRGLPHPSVCPLCDQEEETIQHLLISCVFARQFWYFLLSRSGLPNLSPDNAFCSLDDWWSRAVEKIPRDLQSGFNSIVILGAWSLWRHRNDCVFNGQIAEPCEYSHPRWR
>LINE1-39_ZM_gag#LINE/L1 815-2548 (probably misses C term) [Zea mays]
MDGPGHQDLQRKGSVWRRITPSQSAAGTESSTQPALMAASSGATAPELRSMRKRRRAKRRRGVVEQALLPLPPPSDHDAPLVMQEEAGSDESSVEPTCVLELSIGMAQEEVALRRALYVMVVGTRPKVLGAEVVEEVARCFGIDADSLAIHQAMPEDFLLFLPDEDTATRVFNEGKVFRGPRFNLQFKRWSRFTHATAGALPFLVDVQIWGIPAHAWARSTAEHLLHDSCLVSDIHPATALKSDLSSFKLRAWCFDPKKLHRNMKLYIAEPGMVTSEKRCLSYNISMAAFPVDASSGAEDSPPPPPADGTHPDGDNERHRPDSPSRHPRKGAGQRRSIHLRLGPQQTEGCGWGAATLTNADPFMTGASGCDGLELYPETGPLDLAVHASPLHDNLSAGLFELNGPGSPQSRLVSGSGDITGGDMLKKMHSQVDIVADFADGLSGQHSNGFDGLEMRSGTGPLDLAIHVPPQHNAMCAGLLELSGAGSPQARLVWGTVDTTGTASPQIHNGSLELAQFCPPLIPLPQTDRPLKVYYRKKKRKQTKAHGGVSGVCNWAQYSYKISTEKSGSVWRNWGYI
>LINE1-39_ZM_pol#LINE/L1 2940-6542 [Zea mays]
SFCCSALVVLPVLMDPEKILIWNVRGLNSSARQNSVRELVSSSRADIVCVQETKLTEVPRRTLLSMLGSDFSNFLVLPSLGASGGILVAWKHHLGSTGLNRIDDHSISVQFCTQEGQAWWLTCVYGPQSSEEKVQFLQELRNVRAACLGPWIIAGDFNLIYKAEDKNNSNLNRAMMGRFRRTIDDLSLKEIPLHGRKYTWSNQQNIPTLVKLDRVMCSTDWEDLFPNVLLQSSASEVSDHCPLLLGLRDNRSGKRRFHFESFWPKLDGFQEAVQEAWNSVPALECPFQALDRKLKATAKRLQSWSDSRVGHVNSQLALAREVLHRLEIAQDARSLSLSEIWLKNKLKKHSLGLASLKRTIARLRSRVSWLKEGDANTKLFHMHARHRKRKNFVARLVADNQVFTGHNEKAILMDQFFSNLLGVSIDRDCSVNLEAVGVPTFDLAALDLPFLEKEVWETVKLLPSDKAPGPDGFTGGFYKACWSIIKGDIMAAVSAVWSRRFAQFNRLNTAYITLIPKKEGADQVKDFRPISLVHSFAKLITKLLANRLAGRLNEMISPIQSAFIKGRFIQDNYMLVQQTARLLHRRRQAHLLLKLDITKAFDSVSWPFLIEVLQRMGFGQIWRDILCGLLATSSTQVMVNGFPGKHIVHRQGLRQGDPLSPMLFILVMDVLGRMVTAAEGAGLLQPLATRSVHHRVSMYADDVVLFLRPAAEDIATIVDILHLFGEASGLHNNAQKSNVYPIRCDESDIAVVQGLLPCGISSFPCKYLGLPLTLRKITKDQAQPIIDKFANQLPGWKADLMTRAGRTVQVRFVLTGMLIYLAMAIDLPTYITKAIDKIRRGFLWRGRKEINGGHCLVSWSKVCRPLDLGGLGISSIMELSWALRMRWLWLQKTEPNRPWSSLTIRVPDKVQAFFSMAMQTEVGNGANTLFWKDRWLQGQRVADIAPRLLQVVPKRKINTRTVQEAITGRAWMSDIRGALSVGAIVDYLHLWNLLLTAELRPNVEDKHIFRLAANGKYSAKSAYEGLFIGSIPFEPYERIWKTWAPPKCRFFMWLVAQKRCWTADRLAKRGLDHPDSCPLCEQESETIDHLLVSCVFSRECWFLLLRQFGLHNLSPQPENDSFLDWWRTISEMAAGQMKMGINSLVLLGAWILWKHRNQCVFEGGSPSVAAVLEQVGEERRLWEMAGAKGLIFLAANLPHG
>LINE1-40_ZM_gag#LINE/L1 463-3243 [Zea mays]
MEFGPEDDKVDDDLDFTFSRVRMMAKPKTDIGHSCKDAQHGLAISKMEVGSTTRDGRLEVGKEKQGCLGLSLAQVFRHSWRPINPKWLWVPRSNILSGKGYQARPEEVRRLGQRARRIKRVETPTPFVRSFSQVVKEGRMAWRRESGGNSWKRPPKDWMEEDDLLDSEFSREEDLRSKLQRAPGEHTEQDQQDMGHHRQGSFTGNKIPRRGGFWRGRGNFVPARGGFGGFRSVDRNETGGRGSKNQENRDREQGSQPCSERGRPSGFGVGMQQGRDSKIQEGLVKEIRCFRCSQSGHHQADCPNDPLCYKCKESGHMAAECQNNKKLRLFGFGIPEQGFFGFDIPEKKVQVNMLNAVIHILEGEPTEEKLDRELKNLVQANWDFRVRRMDKHDFSASFPDKSSLESYAKLSSLELPLYSYRVQVTKANSDLMASSVLQCVWIKIYNLPDIAREEGIIREVASLVGKPVVVDELSIIKEGPVRVKVDCRDPSRIKGFIEVFFNKVGYELKXVAEGVRTRSPYLSGTSGSGKQDDKDQDKDRNRPGRNDEKKGGKFERKGKELEKNQDSSFGESQEDMEEDAGVEGTLQEIYDEIPIAAFHPTKGFFSSDLKKVEDHTDTVNSSEVLMLNKEIEQKIISDSQLSDVLDNEGSVDDRAKVAPEKSQIEMMKQRVDDQTFCSNKEINTITNSRVNRNSIGLDGMNHFGGRINLQLANQEKRDQDLKLMLDDFPTEDNEEDWHGNIMEQVELYHTEEDGEQEWEKALSKKGKKKSRRNFPVIATRASSRIARDGIPILEKATKRAREKNQLQGTSRPNPFLILNNESNENLSTVMKDIGIVLENYDNQIDLFKAEERVRATIAEANYNKYVDKINSKNAPQTEEDLQELAMEAITNKERLEAPLISQEGPGGAEPEKNKKKGRPGKQSKKG
>LINE1-40_ZM_pol#LINE/L1 3244-6923 via tfasty with 8096424_Osa, 1 frameshift. [Zea mays]
MKFLSWNIRGMGQLGRINQLREFLTQEKVDIIGIQETIKQEFSVRELNWISSNCCFQWNWIPARGHSGGILLGVKEDSLEVENWENFNFAIKATVRNKFSNYRWVVLCVYGPAQHHQSASFLQELSEICERETLPVVLGGDFNLIRNRQEKNSHNIDQSLMNMFNEFINLYKLREIARVGPQYTWTNNQVNPVLVKLDRFLVSTEWEERFPLCFSKGLTRVGSDHCPIVLDSGENNPNKSHYFFFENNWLLQQDFRALISQKWTDLKDRRPEGSYSMDGWHGSLVSIRRFLRGWNRQKRGDQNKIKQDLLLKLKSLDDGLVMKDNLPQNWNERYRVEKELEHVYHMEEVYWQQRAGKNWILKGDSNSSFFHLFANGRRRKNNILQLVADSCTLVDQKDISNHVVDFYKQLFGPSTPCAMKLRENFWEGRSELSIEEAIHLIRPFDEEEIKQAIDLMHVDSAPGPNGFGVAFFKNFWHIIKGDLMKMFRDFHGGNLDIQRLNYGVISLVPKIKDATSIKQYRPICLLNVDFKIFTKVLSNRLAQVAKVAVGGNQTGFIKNRNILEGVVILHEVIHDLKLKKQRGLILKIDFEKAYDKVRWNFLAEVLKLKKFPDRWTNMVMRTVENGKVCVNINGERSKYFKTFRGLRQGDPLSPLLFNLVADALSVLLDVGIAKGHISGVLNDVLPGGISHIQYADDTVIMIDGSKKSILNLKLILYCFEWLSGLKINFHKSEVFVFGADDQEEKEMANMLNCSLGSFPMKYLGISISDHNINSVISEPILEKMRKRLDPWKGKHLSSGGRLILTNSCLSSLPMYCMGFYLLPKEFHYKMNSIRSNFFWQGAEKKKCYHMAKWEMVTRPKDQGGLGILDSRLMNECLLVKWIWKIVQGSNDTWFKLIKGKYMTKGNFFLSSDRDASQFWKGLHKVKHLFKWGAINKVRDGEGTLFWKDTWWGDVPLKLVYPRFFDICMDKNARVVDYYEEGEWHIDLKRPLTIADFQVWDELVTKLVDQELTHGRDEVVWVLDKSKTFTTQSMYRFMTDGGIRKDIYKNIWKSKVPLRIKVFLWQLCNRKIQAGVVLKRKGWKGSDRCALCQKQETVDHIFFQCSLAYFVWSCLRQVFGRNNIPSSVEEMFCCRSEVKPKWTSLFRLFLLAGMVWALWRNRNKMVFEREFPCSPFVIFRDAVSFLQKWKVLLSEDDQSMLEKKVEEVQSWIFSFKSVDGGGSDIVVI
>LINE1-41_ZM_pol#LINE/L1 2-2134 fragment [Zea mays]
ADVMAVMNSLHDQRFLNFDLLNRANIVLLPKHDGAENLSSFRPISLIHSVAKLFMKLLSMRLAPTMRDIISKCQTAFIKGRSIHDNFLFVRNMARRYHRNGTPMLLVKLDISKAFDSVRWDYLLALLAHLGFPPKWRDWVASLLATCSSQVLLNGIPGQSITHGRGLRQGDPLSPFLFVLAIDPLQRLLHLATEAGILSRVAKARTRLRIAMYADDAIIFVKPEKRELDSFATLLHQFGEATGLRTNIQKSSVVPIKCAGLNLDEILAGFPASRSQFPIKYLGIPLSVERLKKVDFQYLLDKVSSKLTCWQGRNFTFAGRLVLVKSVLSAQPVHTLTTINVPKVVLEKIDKFRKRFLWAGNENLTGGKCKVNWPTVARPLDLGGLGVLDIHRFARALRLRWLWREWEVPEAPWAGLQTPCNDTDKLLFAAATRIAIGDGAKTSFWHCAWVNGRRPKDIAPDIFAASSDCRLSVREALTDSTWVNRIDLHAIHTADHLKQFVELWSFAHSVSLVQNTEDRIDWIYNASGEYSAASAYRIQFMGHTCSNLKALIWKPWGPSKCKLFAWLIIRNRVWTSDRLAARGWPHSPSCPLCKRHPETAHHIIAGCRYSRRIWDALASWLSIGPLAPATWPDSTSIKQWWFMVGSVAVPKKGTRSLLLLVVWHIWLERNNRTFQRQERSVADLLAAIKAEARLWGVAGAKHLLALLPML
>LINE1-42_ZM_gag#LINE/L1 327-2762 [Zea mays]
MVGYPAPTPPSSVSPRPCRASLAGAVGSSEADQLVLSQGSARSFPSEGGWQVVARRRSGRPPPAPRRWSPEDLRGRCFNCLSPSHFVASCRRPSRCFRCLGFGHRAPGCPLKVARKAHPEHQVGRVSVWQRLGAMQDPAQHGGFRRRESVWRRISPSQPATGGELLSPPLMARGSGESTPLAAGGRRKRRRAKRRRAAVGDTQEQRSRSPTSASSGGLGAEGAVQHVVCVETPSCVLDFSIEMAREEAALRKALFVTVTGTRPEVPAVDIIEEIAQSFNVNRANMSIHRTLPEDFLVFFPDEDTVSRVLNGGKIFRGPQFDLVFKRWTRCANASTASLPVLLDVEIRGIPAHAWSRATAEQLLRDSCIIDELHPATVLKSDFSSFMLRAWCINRAKLHRNMDLLITEKGPGSGEKRCLSYKLNILATPVPVEDGALPADVGDGAPPDGDGGHTPGGGGGHQPGGSRGLSSRPSSPRHPRGSDGGRRSALSRLGSQQPSRRVGNDLVIAPGETINGAVGEAAEVLPSVLCPSTEGAELNVGDVRVSDGMPDRQAEELLPDKEAEELIPDRQADESLGRALDGLVSPRCLSSLVGTAEEKGQCEAEELFPDRQADESLGRALDGLVSPRCLSSLAGTAEEIGQCEAAGQGCPTLKVYSRRRQRDPLQQTPSPLEDTSVESDHVKDTTPVCDFVALVTKKTDGLLPPPVPLRRGCKQLPPDFIPRRSSRLARQRTPNDATRQIQFELLRTMDIGGADEAFSDKALEKYGRLFNSPLSESHIKALAALFGWSVPVDIHLQDVQVLPAVLGPEDIM
>LINE1-42_ZM_pol#LINE/L1 2785-6354 [Zea mays]
FLMTLFPMDPSKILFWNVRGLNRKVRRDGVRALVNNTCPDVVCLQETKKSSISRFMVASLLGVVFDEFVTLPAVGTRGGILLAWKSSSCKVTQYRIDTFSVSAQFQHNDGTLWWLTGVYGPQLDNLKILFLQELQLIRNLCNGPWMIGGDFNLIYRAEDKNNGNLNRAMMGRFRRLLNELNLKELPLLGRKYTWSNERSSPTLVRLDRVFHTADWETLYPNSVLQSSASLISDHCPLLLGLHELVQGKRRFHFESFWTRMEGFMDEVQQSWLQPLEGCCPLQRFAGKLMRLSKHLHSWSQKKVGNIKKQMLMAKEILHKLEIARDSRSLSPQEEWLRQRLKHLSLALVSLERTIARLRSGLLWMKEGDANTKYFHQHARYRKKKNFIGKIQVQNRLIIDQKEKKEVVWDFYNSLLGMVPPRASALNLEAFHRCPLNLQELEQMITEEEVWHTIRSLPSDKAPGPDGYTGRFYKKVWPIIKMDFMAALMKVWQGDASRLYLLNSAYVTLLPKKSEAIEVKDFRPISLIHSFAKIVTKILANRLAPKLPDLVSVNQSAFVKGRSIHDNFVMVQQTAKAIYGQKMSRILLKLDIGKAFDSVSWTFLFEALRHLGFGPLWCGIVSRVLSSSTTRVLVNGEPGDIIHHRRGLRQGDSLSPMLFIIVMDVLNSLILKAQDMGLLQPLLRRGRGQRISLYADDVVLFLKPEIDELNLLKEILRIFGEATGLVTNINKCSITPIHCNEQQVDMSKEIFPCNVQQFPCRYLGLPLSVKKLPKFAFQELIDKVADKLPGWKSALITNAGRLTLVKAVLTAIPIYHLLVLLCPKWVIKAIDKIRRGFLWKGRKDIKGGHCAVGWTRVCRPLKFGGLGIHNLEILGWALNVRWIWLRKTQVERPWTEFDIKVHPNAEALFRASVHSSVGDGATTLFWMDRWIQGQSIAFFAPYLFSRIPSRVRTGRTVQEAIADNSWIQDISRGLTAVVIREFLLVWDLIQDVHLQTGVPDVHIWVPCASGLYSSKTAYNSFWNGTTSFEPAKRIWKSWAPPKCKFFIWLASLNRCWTADRLARRGMDHHDKCLFCDQHEETVQHILLSCVFSRNIWWQVWCKVGLQHLAPGPEDMIFQDWWSNAEGQVPKEKRKGFNTLVILVAWWLWKHRNTCVFEGASPSTRDILQHIHEDATLWGMAGARGLRGLWP
>LINE1A1_MT_gag#LINE/L1 746-1813  [Medicago truncatula]
MIDGQLVDIKIVEEWGVNVGEDACLFEEEDEQQSQSDIKEVFRDPETSKNFNVAVDEIVKELEAEELHNVSELREEVGACVDVVDVNPEDTSDVGPIINLDNGKGATTQSSTVPGVVRKLSDGKDMANFDGESLPEVSVLNLVNQAGVVDSGGVGRGRRSGSKSVGDRHAISASGPPFDGKSVLSGPWSTEWLKDHHGGVGISFSAKRKFIKVGKRKVQKSQEGVDATKRRKIGGELRHTVHTLKKVARLSSKDRNAVLRTLKRRASKKKQPSGVEGSQGNSDEVSSFASVNKEWNNWVVLHGKEKEAAEDVWGIGKAFGLQFQGDIHNMFGALARKGEGKKDSKRSVEGGSGAAK
>LINE1A1_MT_pol#LINE/L1 1857-5534 via tfasty with LINE-05_OS_pol,  1 stopcodon [Medicago truncatula]
MRIVSWNVRGLGGLEKRREVKELVREKKPFVLCIQETKLEVIDEFICTSLWGPTNHDFSFSPSVGASRGMVTIWDRVEVEVWSTVRGVHFLLIHGRFLKSNEEFYIFNMYAPCDRRAKQVLWNSLSSRLLSLGSSKVCVCGDFNTVRSVDERRSVRGSQVVDDCAPFNDFIEDRVLINLPLCGRKFTWYNGDGRSMSTLDRFLLSEEWCMVWPTCLQVAQLRGLSDHCPIVLTVDEKNWGPRPVRLLKCWQDMPGYSDFVREKWGSFQVSGWGGFVLKEKLKLMKAALKEWHVANTLNLPSKIVSLKNRRAVLDSKGEEEELSEEELGELHGISSDIHSLSRLNTSICWQQSRLNWLRDGDANSKFFHSVLAARRRINSLSSILVDGVVVEGVQPVRQAVFTHSKNHFLAPIMTRPSVGHLQFRKLSSVERGGLIKPFHEEEIKAAVWDCDSYKIPGPDGINLGFIKSFWHEMKAEIVRFVTEFHRNRKLSKGINSRFIALIPKVASPQSLNEFRPISLVGSLYKILAKILANRLRQVIGSVVSEVQSAFVKNRQILDGILITNEVVDEARKSKKDLLLFKVDFEKAYDSVDWGYLDEVMGSMTFPTVWxKWIKECVGTATASVLVNGCPTDEFFLERGLRQGDPLSPFLFLLAAEGLNVLMKALVDAGLFKGYSVGRADPVVVSHLQFADDTLLIGNKSWANVRALRAGLILLEAMSGLKVNFHKSSLVGVNITGSWLSEAASVLGCKVGKIPFLYLGLSIGGDPRRLLFWEPVVNRIKNRLSGWQSRFLSFGGRLVLLKFVLTALPVYALSFFKAPSGIISSIESLFNKFFWGGGEDKRKISWIRWDTLSLRKEYGGLGVTRLREFNLALLGKWCWRLLLEKEALWRKVLVARYGVADGGLEDGGRSCSSWWREIVRIRDGIGEGGEGWFGSCVRRRVGDGAETDFWWDCWCGDVSLCERFSRLYDLTVNKLISVRNMILLGVDVGGEALRWRRRLWAWEEELVEEFXALLLTVSLQESVTDRWIWLPTQDDGYSVRGAYDMLTSQEQPHLHQNLELIWHTQVPLKVSILAWRLLRDRLPTKDNLANRGILPLEARMCVSSCGNEEDVNHLFLSCATFSALWPLVQAWLGVVGVDSQSTSDHLVQFINYAGCSRGRCSFFHLIWLLVVSVLWNDRLFRNRQSSLPQMLDKVKSTSLWWLKACNVVFSFGTHQWWSSPLSCLGID
>LINE1A2_MT_pol#LINE/L1 2-2824  [Medicago truncatula]
EWHVTHSKDLSRKIKSLKERQSELDGKGESEDLSAAEIEELHVVSSDIHSLSRVNTSIAWQQSRVHWFREGDANSKFFHSVLLGHRRRNRLHSIVVDGAVIEGVLDVRAAVFSHFSNHFKRCGSERIALDGLTFQTLSYAEGGGLTKPFSLEEVKEAVWDCDSYKSPGPDGVNFGFFKDFWGFLKDDIMQFMVEFHRNGKLTKGINSTFIALIPKIDHPRNLNDXRPISLVGSXYKXLAKVLANRLRQVIGSVVASESQSAFVKNRQILDGILIANEVVDEASRLKKELLLFKVDFEKAYDSVDWRYLDAVMEKMNFPILWRKWINECVATATASVLVNGSLTDEFPLERGLRQGDPLSPFFFLLAAEGFNVIMKAVVARSIFEGYKVGAPDSVPVTHLQFADDTLILGVKSWANVRAMRAILLLFEEMSGLKVNFHKSMLVGVNVSDSWLSEAASVLNCRVGRMSFMYLGLPIGGDPRRLIFWEPLLRRIKSRLSGWNSRFLSFGGRLVLLKSVLSSLPVYALSFFKAPSGIISSIESIFYNFFWGGCEDSRKISWVNWNSIYSRREDGGLGVRRLREFNLALLGKWCWRLLVERSSLWYRVLVARYGEEDGRLTVGGRRGSAWWHAIXNIGDGVLGVGGGWFXEXMSRMVGDGTDTLFWHDMWLGEVPFRVRFRRLYDLAIDKSCTVANMFSSGWDVGGAGWRWRRRLLAWEEEMLGECAVLLHNVSLQVDVKDTWRWLLDHSAGYTVRSAYHLLTSQAIPHVEGAAALVWHKHIPLKVYIFVWRLFRNRLPTKDNLVHRGILSDAEASCVLGCGAVETSQHLFISCDFYGSFWSLVRAWLGVSGLDPCIVFDHFIQFTHLAGGLRARHSFMQLIWLFCVWVIWKERNQRLFNNIGSSIVQLLDKVKLHSLWWLKANHAIFAFSYHVWWSRPLHCLGLG
>LINE1B_MT_pol#LINE/L1 6-2726 (LINE1A_MT_pol 100% identical) [Medicago truncatula]
WDVVGKNICEFVRDVWREPDKISTVNKTDICLIPKINQPEFVSQFRPISLCNTIYKIVSKVVVGRLKEYIPHIVSPHQTGFVPGRSIHENIVVAQELAHSMNRMRGRTGYFVIKVDLAKAYDMLNWDFIWRTLKEIGFPDVLIDLIMHGVTSVETNVKWNGARTEYFRPQRGIRQGDPISPYLFVLCMDKLSHLITHEVNQGRWKALRAGRRGPVISHLMFADDLLLYGEATTSQMKCVTDTLKTFCDLSGQQVSQEKTSMLFSKNVHRGVRQQLLLLCGFKETSFLGKYLGVPLLGRAPKRADFQYVIDQVNGKLAAWKTNQLSFAGRVTLAKSVIEAVPIYPMMTNIIPKACIDEIHKIQRQFISGDNENNKRYHAVSWETVSKPKVFGGLGLRRLNVMNKACIMKLGWSIYSGSTSLWAEVMRGKYQRSDILAELFIAKPSDSSLWKALVKLWPALERNIFWSIGDGKSVGAWSQMWIEERLCVSELEIDIPQQCKEMKVADLVDFNGNWNFELLNQWLPYDVVQRIMTIAVPDENDGNDKQMWSGSSNGKFTIASAYHMLSKFDNDAQDEIWLKLWKIRAPERIKHFMWMLYHGRLLTNLRKHKMGIGNPMCRFCHDEIESEIHVLRDCPKATALWLCVVDNAARTSFFEGDLSNWINFNLFTNVYWNHNVEWRDFWATACHAIWNWRNKETHNDNYQRPLHAKNIIMSYVNDYHNAIAKSVIVTSQLRHLEEVGWKEPPIGWVKINTDGACKDGSIAGCGGLIRGSQGEWLAGFSKFLGKCDAFIAELWGVLEGLRCAKRMGFTAVELNVDSLVVVNIITSGKESNARGRSLVQKIRKLLQMEWEVKVKHSYREANRCADALANIGCIMENGMMFYESCPTQINHLLAADQAGVTFPRLIKM
>LINE1C_MT_gag#LINE/L1 4-1596  [Medicago truncatula]
MSSEFVFSALSDQNLQATNKPPDPYKPSSPKISFRDKLLGPSQEPMLREKEDMIEKNLVRIEHENGNRLLPKVYLEPSVFQELCTPWKDAIVVKLLGKNLGYHTMKERLQRTWKPQGGFEIMDNDNGFYMVKFDQAANKEKVITGGPWLIFDHCLAVTHWSPEFASPNTKVDKTIVWVRFPGLNLVYYDESFLLAMASALGRPIKVDTNTLKIERGKFARVCVEIDLTMPVVGKIWVNGHWYKVQYESLHLICTNCGCYGHLGRNCSSTRHLQPSTSSEPTPSAVHQPAVVSQQTRSTPTSDEHLIQNVQKGTTVTISSKDSLPNDDQLNAIDGDNHVLHGEWSLVTRKKKPTKNIIINPQKTVTTKNNRFNALNHLTTRNKTGLPLPNNQSRPIIVQRCILQVPKDTKHRRHDTMATDEPVFDFSQVNPLVLSPPHSHKTTPEPHVPKTTQQLPTKQTTTNEVQENDPTLVNNPTPEPDPNSSFMLATPIPNDQEANHPTKDQIGETSYHKDDVHQNLDTQETQDEEMVT
>LINE1E_MT_gag#LINE/L1 9-1286  [Medicago truncatula]
LPFLVRRIPFSPSEKFLYHFVSMTSLPNLHLSDEEEELEIPIEVIPDDTTDTSASLVGRFLTDKPIRGHMMTSKIAEFWHPGRGVNIKEVEPNLFTFKFFHYRDMHTILKKGPWYFDNNLLILNTLPDDAPAQSVPLQSVPFWVRIHDIPVGFMTERVGKDLGNFIGEFLEYDVKNGANHLRSYMRIRVLLDVNKPLKRQKNIKRPGGNIQTVKFKYERLGNFCYYCGALGHIEDYCDKLYSIDSDDGARFWGPELRVDRQKNEGRGSRWLREEGQEWSPPSNSAPKAAGDVSVGPANGNGRALTVVTSPAKTVALADLLRNPNLIRPSGSNKQQESHLSPHNETLLEEDNATIIHSNTKRSRADLNGGSLSADSSNARPTSLSIPSTPAHNNSQSTPMEVVNTKSSSTSVPFLSAAPGSQACRES
>LINE1F_MT_gag#LINE/L1 1-1617  [Medicago truncatula]
MSSEFVFSAQGEPSFEKPPDPPKAKLSFRDKLLGTQNAIPSREKENLIEKNLVRIELENGNRLLPKVFLEPKTFQELCTPWKDALVVKLLGKSLGYNTMKERLQRTWKLQSGFEIMDNDNGFYMVKFDQEADKEKVITGGPWMIFDHCLVVTHWSPEFASPEAKVERTVVWVRFPGLNLVYYDESFLLAMASAIGRPIKVDTNTLKVERGKFARVCVEVDLTVPVVGKIWINEHWYKIQYEGLHLICTNCGCYGHLGRSCSVKPTKTATSNPHHHPTAATQQENSHHSQREPATISINSMSQNSNGNEINAINEVEPILNGGVITINEGTQELHGDWLLVSRRKKPANIQQSTHSKNASQNKANRFSVLTNTAHQSKPNSYPSRTSIQVIPQNTKNSTDLKRRRHNNDNDDIIIQNLSITPKAILKSLHKSLHKPVLDKVIPDVTNLTQVNHKKTTMDPPHLSQPDSATPPHNNNPITPTPQINTPRQHANCSGTNELDVQDLEDEAMASQDNLQSMQAHETSEGKHKASSDTKEDMIT
>LINE1G_MT_gag#LINE/L1 439-1908  [Medicago truncatula]
RRGEKKLYFKKEKNVEAEGEVVLKDVLKVEEEMKKVEGKKDRLQKISKVEEKVDIFCPLLYNSKPEDRVWASEGMVATVVSGDSSLSLQQRVEDAGFSNVIVTPMGSDRVFLYCTGGADIWTVFNDAVHFFGMLFSDLHRWSSEDIIYERGAWLRIYGIPVHAWNEDFYNICVSGCGRFIRSDVCTVERARLDFARVLISTTFLEVVNSSLEVVIDGCKYLLKLVEEWGCNLGEDAFLSEEEQDPRLESLTLKDSASLEDVKGEMNDLVDDLKEEWLNGDDFFAGITNIEVDPSRVPVESDRPDTTFVNLDVGVYKVESSQNHVSHKPDSCSKELKETSSSLKSNSKLSKRKYKQAGVAVNHSVGFIKRIARLPSKDRKEILKVLKKQDRKRKLLIKASKAASNSLSNSSNNSNSSVNKDWENWVVLHGKKEVAAEDVKDIGKLLGVNFKGDINNSFNLLSKEGRKEWRAERGTLLLKEDGEGGGKVGME
>LINE1G_MT_pol#LINE/L1 1957-5634 via tfasty with Karin_TM_pol, 2 frameshifts and 1 stopcodon.  [Medicago truncatula]
MKILSYNVRGLGSFEKRAEVRNFIHEKNPFVVCLQESKLSMVDDYILNSVWGNIGCDYSYQASVGASGGLVTVWNPLLVEVWCTISIRHVLIIKGKVLSSDQDFIIANVYAPCDTLAKQDLWVRLSHFLIANGDVNVCVCGDFNSVRSEEERRGRNVVFRQVDADNFNNFIDSSFLIDLPICGRLFTWIGGMVSRLDRFLVSSKWCDSWPNCIQVAYQRGLFDHVPLVLSVDDENWGPRPLRLLKCWADYQGYADFVRDKLNSFVLDGWGGHVLKMKLKMIKNSLKVWHQQQSKNVESKIMDVKNRMSWLDSKGEESNLLEEETQEIRELSVKLHSLSRVHTSMNWQKAMMNWVREGDANSKFFHNMMSNRQRRNSLHLIHVDGVLVEGVQNIRAAALNHFATQFRASEGSRPGIQGLNFRKLSYAQSGSLIRPFSLDEVKQAVWDCESFKSPGPDGINLGFIKDFWNELKDDFMKFLLDFHRNGKLTKGVNSTFIALIPKVASPQKLGDFRPISLVGCMYKVLAKVLANRLRSILSYVVSDNQSAFVRGKQILDGILIANEVVDEAKRxKKDLLLFKVDFEKAYDSVDLNYLNSVMLNMNFPTLWRKWIMECVGTATASVLVNGCPTDEFPIQRGLRQGDPLSPFLFLLAAEGFDVLMKASVSSNLFNAYGIGPQSEIKISHLQFADDTIIIGEKCWLNVRTIRAVLLLLEEVSGLKVNFNKSMLTGVNISHNWLTEAASVLNCKTGTIPFLYLGLPIGGDSRRLSFWKPVVDRIVARLSSWNNKFLSLGGRLVLLKSVLSSLPVYFLSFFKAPAGIISSIESIFKKKIWEGCEVSKKIAWIKWDSICLPVNRGGLGVRRLGEFNLSLLGKWCWRLLIDKEGLWYRVLKARYGEVGGRIQEGGREVSGWWSMLCKVRDGVGSGVGNWFDVNVRREVGNGSSTFFWTDKWLGGVPLKIQFSRLYDLAVHKECSVADMERWGWVEGGNGWVWRRRLLAWEEESMRECITLLDNVVLQVHIQDRWRWLLDPVHGYSVGGTYRFLTNSEEQVANDDFIDVWHKLVPTKVSFFAWRLLQDRIPTRANLVCRLILQPNDNLCVGGCGLSETTGHLFIGCESFGSVWVLLCHWLGFSFVPPGSIKDHYIQFTHLAGLPRSTHVFFKVIWLACVWAIWKERNNRVFNDTVIDPLHIVEKVKLNSFLWLSSNIEPIAFGFYDWWRHPLFCMGVI
>LINE1H_MT_pol#LINE/L1 5-3840 via tfasty with ATLINE1_10A_pol, 1 frameshift.  [Medicago truncatula]
LFAAQLLSEFHKHVYSGSCNSNWRLTAFYGYPDSGRRRDSWDLLRHLSSLSNDPWCIIGDFNDHLSSADKRGGPDRPPWLIRGFQDAVNDCNLFDMPLFGYQFTWFKSIGTDSSKEARFDRALVTSSWTNTFPNAALQTLVAPISDHTPLLLQLHPIPWRQPYRSFQFNNSWLLEPELNELVKNNWEHYPPSNILTKLNHCVEDISSWSSSVTPNFKHLINKQRSVIEDFRTYSNDASDPQLQLLQNNLATLFLQEESYWRQRSKIFWLSEGDTNSKFFHASASARKRNNTIKKMRDNSGNWITSHDDMCTLVHDYFTSIFTARQGDHQPIISCVQPRITAEDNTILTQPFSEQEFKEAIFSMHPDKSPGPDGLNPAFYHRFWKDIGGEIFTTAINWLSSGVIPPDLNATHIVLVPKGDNPESMKDLRPISLCNVLYKIISKVLANRLRPLINKWISPEQAAFVPSRSIMDNALTAFEILHYMRCKRKGKKGEIALKLDISKAFDSVSWSYLQAILSKLGFCSQWITWMMMCISTVEYHVIFNGDRIGPITPGRGLRQGCPLSPYLYIICAEGLSATIKNHELRGKIHGTRICRTAPPVSHLLFADDSFLFCKATISEAQYLKDILSSYEHASGQAINYRKSAIAFSSNTPQDTISSIITCLGVYSAIGSGKYLGLPSMVGRSKKAIFSYLKDRIWKNCQSWSARSLSRAGKEILIKSVAQAIPSYCMGAFLIPTSLCEEIERMMNSFYWGSKKNGRRGINWMRWDKLTLHKSLGGLGFRNLEAFNLSMLGKQSWKLLSDSSSLFTRILKAKYFPRRDFLDATLGHNPSYTWRSLWSTQSLLTLGHRWKIGDGSKINVWSMPWIRNLPSLKPSTPPPLHHEDLTVNYLLNSDVNSWNITLVQSLFNSVDAAAIVSIPLFPRTATDQRIWKATADGSYTVKSAYRICSDLIPAINHIQNDHRWNTIWNLQIPPRVRSFLWRLAHQCLPTRANLLTRGIPCDDSCVFCDPLAETHMHLFFVCTKASNCWELLGVNHIIRELLLTTNDFTTMLFDFIDRLHSQQQALVAMFLWSLWKSRNSKLWDAIDTTPISIVTRAKDTINEWSCMQRAKAPIHHANSVHSWIKPPVGTIKCNVDAATFNNNSIIGYGMCFRDYTGHLLIGKSDFLHSSATVLEAEALALLDAIKLAISNGMHVVLFETDTKILADALTNNSSPTNEFGDLVTQCRSFLLNNPDFVVSYVRRQANRVAHSIARASLSHPSPHIFYHVSPTLYSLIMNEMN
>LINE1I_MT_pol#LINE/L1 75-3399 via tfasty with ATLINEIII_pol, 2 frameshifts and 2 stopcodons.  [Medicago truncatula]
MKLVCWNVRGCNKPFKQKEIKNFLLKNKFDMCILVETRVKANKFNKISSMIFKRWPVLNNYDSAANGRIWVSWNPNVLDVKPIASSAQAIHCEVVNLTSSECFNFVAVYAFNTLEQRKELWNFIAHTSAQNSRNLLIGGDFNNVLLVDDRRNGNPVTQHEIQDFSDCLLHNRLSEVRTIGDYYTWCNNQTSGDRIYSKIDRFIANTSWLQKFTNAVDEVLPKGASDHCPISMDMSCPASPKNTPFRFINDLTDHHLFPALIQEKWGPNLHTNLLTNIWFKLKALKKDLKELNSTHFQGIAKKVEDARTALVDVQRQLSSDPMNLDLIEAEKVCLSSLEKWSTIEEKIWMQKSRANWIQLGDSNTKFFHAYAKERRCQNNIKFLITEDDTRIDKHNLIKEEIRGFYLKLMGSSVDSLPMVDKNIVKRGPMLSQHQQDLLCSEFTAVEVKNALFSMDSSKAPGIDGYNVHFFKCSWNIIGDSVIDAILDFFKTGFMPKIINCTYVTLLPKEVNDYIACCSVIYKIISKILTSRMQGVLNSVVSENQSAFVKGRVIFDNIIxSHELVKSYSRKGISPRCMVKIDLQKAYDSVEWPFIKHLMLELGFPYKFVNWVMACLTTASYTFNVNGDLTRPFAAKKGLRQGDPISPYLFVICMEYLNRCLIQLRKNAAFRFHPRCKRLNLIHVCFADDLLLFSRGDVDSVVTAFSLFSAASGLKANQAKSSIYLGGVSMSGQDAIVTKFNLVKGELPFRYLGVPLSSKKLSVIQCQPLVKRIICRIENWHSKLLSYAGRLQLIKSVLFGVQTYWSQVFVLPQKVLKLIQTACRVFLWTGKFGTSKRALIAWERICLPKTAGGWNVIDLKVxNQAAICKLLWNLANKKDVLWVKWVHEYYTKGRNVLLMDVPAQASWVIKKVFGAAKTISSVDGSIFQQANFSIKRMYNALRGDFAKVGWRKMICNNPAPPKCLFVTWLIIHARLPTCDRMLKVGIQCDQVCILCTKENETHSHLFFSCDYADAVWKGVMRWMNMTVNTSNWHSILQYIQSHCNSNNGMHQAHIMVLSVTLYMIWKERNDRKFQNCYRSVQQLLNQIKMDAYIRGLQFKKVQTLMIRVRG
>LINE1J_MT_pol#LINE/L1 79-3765 via tfasty with MIUSE1_TM_pol, 2 stopcodons.  [Medicago truncatula]
MKILSWNVRGLGGSAKRPEVRKLLSEKNPSIVCIQETKLAVIDDVFCSSLWGILTHSYSFRPAVGASGGLLIMWDSSVVEVWSSFSLEHVLLIHGRFIDSNDEFYLFNIYAPCDNGAKQLLWNSLSEHLHRLVGKNICLCGDFNAVRSMDERKSRGVAIRSFDCDPFNCFIDSNVLVDLPLQGRSFTWYKGDGTSMSRIDRFLLSEDWCNRWPTCMQVSCMRGLSDHCPLVLSVDDFNWGPKPVRMLKCWSEFPGYKEFVRSKLQSFNLEGWGGFVLREKLKHIKIALKDWHLTHSQNLPSKILSLKTNIDALEDRGEVNDLSEEDLTDLHDMSMDLHSLSRVNASISWQQSRLLWLREGDANSKYFHAIMSDRRRRNTISSILVEGHIVEGVSEVRAAVLNHFQHHYQVLPLNRPRVDGMNFRHLSVLEGNALIRPFTEAEVKVAVWDCDGYKSPGPDGVPLGFIKDFWQDLKGDIMRFVLEFHRNGRFSKGINSTFIALIPKIDNPHRPNDFRPIALVGCLYKILAKLLANRLRNVMGSIISDTQSTFVKDRQILDGILVANEVVDEARKLKKDLLLFKVDFEKAYDSVDWGYLDDVMGKMAFPTLWRKWMKECVTTATVSILVNGSPTEEFQMKRGLRQGDPLSPFLFLIAAEGLNVLMHSAVNLNLFTGYSIGSHNPTVLSHLQFADDTLLLGVKSWENVRALRAILVLFENMSGLKVNYHKSLLVGVNISESWLQEAASILSCKIGKIPFMYLGLPIGGDARRLIFWNPVIERLKSRLSDWKSRNLSYGGRLILLKSVLSSLPVYALSFFRAPAGIISSIESILIKKIWGGGEEHRKIAWVDWNSICMNKGVGGLGVKRLQEFNIALLGKWCWRCLVVREGLWYKVLFSRYGEHRGRLREGGVTGSAWWREIVKIQNGIGVEGENWFEESIIKRLGDGLNTFFWSDCWVGTVSFMERFRRLFDLSIHNDLSVGEMYALGWEEHGEAWRWRRILFAWEEELVGEIRNLLTNVTLQDTQSDVWLxRPNIGDGYTVSGVYQMLMRQEMHNHDIVSDAPWHKSVPLKVSICAWRLFRNRxPTKDNLVRRGVISHDSQLCVTGCGQNETLDHLIIHCPIFGGLWQQIKTWIGVFSVDPYQVLDHYYQFVFSFGSNASRRSFLHLVWLCGIWVLWHERNQRLFVNTAKTTAQLLEKVKIISLQWLKAKNVCFPFGYHVWWQRPLTCLGIG
>LINE-1_OS_pol#LINE/L1 1-3581 via tfasty with Karin_TA_pol, 1 frameshift and 3 stopcodons. [Oryza sativa]
MKGIFWNSRGLKDLAKTRFLSEISKEQKLDFIALLETSKNKYTDSWLKSIYGGREFLWHWTRPKGRSEGILLGVNLEYFKVSSIDEGDFYVKFHVRNKEDAFQWILVAVYGATQEEYKEAFLTELVNSCRKEALPMVIGGDFNIIRKPQEKNNANFNVKWSFLFNAVINSLNLREIILSGRKFTWANAMPNPTYEKLDRVLVSTEWEVKNPLVTVHALSRDLSDHTPMLLDTCKGSHKDSQPLFKFELGWLLREDFQKLLANIWTKDVRGATNIARWQNKIxRLRQFLRGWAKNTSGAYKKEKVKLMAKADELDKLAETRLLTSQELELKNSVKHALAKMLREEEIKWYQRAKTRQIVGDRNTKYYQMIANGKHRKTKIFQLDQEEGIIKGNEQLKKYISNYYKNLFGAPEKNNFSMCENQKDDIPQISVAENELLTSEFSEEEVKNAIFQMEHNKAPGPDGFPAEFYQVFWEVIKDDLMAVFRDFHRGNLSLNNLNFGIITLLPKNKEARQIQQYRPICLLNVSFKVFTKVMTNRIALVAQKVIRPSQTAFLKGRNIMEGAIILYETLHEMHRKKLDGVILKLDFEKAYDKVDWKFLQQTMRMKGFSERWCKWIEQIVTGGSVAVKVNDEIGNFFQTKKGLxQGDPLSPILFNLVADMLAILINRSTERGMTRGVIPNLVDNGLSILQYADDTIIFMENDVEEAKNLKMVLSAYEKLSGLKINFHKSEMFCYGKAKEVEKAFSFLFGCKIGSYPFRYLGLPMHYKRLANKDWKELEDRFEKKISSWKGKFLSTGGRLILINSVLSSLAMYMLSFFEIPKGILKKLDYYRSRFFWQCDEHKKKYRLAKWSVLYKPxECGGLWIQNLEIQNKCMLSKWISKLINEEGIWQNLLRKKYLRKKTILQVQMQQGDSHFWASLMTAKESFQLLGHFKVRNGKQVRFWEDCWMGNKSLEKEFPNLYNLVQNKNTVLAKVLETIPLNVSFRRAIVGKNLADWYVIVSKVANVNLTSHLDQFIWKTNKEGLFIVNSMYKLLMFDGVIPRKSLIWKLRILLKIKIFLWYLNKGVILTKDNLAKRRWKDSLLCSFCNSKESIQHLFFDCIMARYIWSVVYFTLGIRQPRSCAHMFGNWLNGFEPKLKRQTWEGIAAICWALWLSRNDIVFNGYNHISFLQVIFKATHWARLWSLLLKKVEGEKA
>LINE-3_OS_pol#LINE/L1 Chimaera of best bits of LINE-3 ORF, gi|50921361, gi|34897770  pos 8911-10967 of consensus. What's the rest of the element? It doesn't look like anything. [Oryza sativa]
MALEALEGPIHAVSRAPAQPDVEARPSSGEGPSHGRGGRGLQRPLLQATFPGAHHRALLALLQLLAPGQGCGGVGRVWLIGFFSSALGVVPLNGIVQRERFGVERARSELARPPGCCLDFDYSFLPAVGRSGGVLLAWRTTVWSVSDVHHADFSLTALVRHSSNVAPWWLSIVYGPQEEPDKLRFLDELRSLRSSCTGPWAVVGNFNLILEAQDKNNLNLNRRMMGHFRRLVDELELRELPPHGRRFTWSNERESPTLVKLDRVLFSADWEELFPSCLLQAASSIASDHCALLLHTCVTSPKAHCFRFEAFWPKFDGFLQVVQDAWHPPANLPPLAALAWCFSTMAKHLQRWSDRHIGSEGDANTKFFHLHARARRQKNFITRLRDGDQLAVSHDALQEFASSHFCAILGTSVERELALDLHSLGLRLAQLEGLDCPFTEDEVWAVIKSLPSDKAPGPDGFTGRFYKSCWPVIKVEILAALNSLFLTNGQGFASLNDALISLLPKKDEAVDIKDFRLISLIHSFGKLFSKILASRLSPRLDELVASNQSAFIKGRSLHDNFRYVKLAARALHAKRVPXLLLKVDIAKAFDTVSWPFLLEVLAQLGFSQRWRDWISLILSASSSRVLVNGVPGPRFPHRRGLRQGDPLSPMLFILVMDVLNAMLRKAFDSGGFLPLNDRAIRHRASLYADDLVLFLSPVRQDLEFIQGILSVFGAASGLRTNFTKCSITPIRCSVLDLKLVQSSFPCSISEFPCTYLGIPLSVRKLPKAALQPLVDKVSHRLASWKGRLTTLAGRSVLVQSVLSSIPVHVSMAIGLPSWVIKAIDKKRCAFLWTGTDSANGGXCRVSWTRVCRPRDLSGLGIMDLMMAGFALRVRWLWLQHSGHHYWFVLKAPVEWSVSDMFAASTFSILGDGQSTLFWTDRWIDGRSIASIAPDLLHAVPPRFRGSRTVAVGLANNSWVGDICGALTVPVISQFLLVWDAVLPTQLSSGVEDHLAWRWTGDQCYSTQSTYRAFFLGQHSFACADLLWHAKGPAKCKFFLWFAFQQRCWTADLLQKRGIDSHSACPFCAQKLETANHILIDCVFARQVWLRVMSPPGWAALSPLRGSWLQDWWSSSRACLPEHHCSGFDSLVLLVSWQLWKERNSRVFDSALASVAVVMESTRSEGQLWSLADVAFFGDLLGV
>LINE-4_OS_pol#LINE/L1 gi|58532025|emb|CAD41563.3| OSJNBa0006A01.18 [Oryza sativa]
MAQSLDLISWNVRGLNSPARCNVVHELMLDTKCTLACFQETKLQSIDDGLARFLGGYKLDKFAFKPARGTRGGILLLWSSGDFDVQEVRIGRFSISAQITDIRSGVTFLLTGVYGPTRHHLKDSFLRHIRRLRPSPGEGWLILGDFNMIYRARDKNNSNLNLARMRRFRAVIDRCELHEIPLQNRKFTWSNERRKATLVKLDRCFCNEEWDLAFPHHVLHALPTGPSDHYPLVLSNPQGPHRPRTFKFENFWTRVPGFKDKVKDIWSQPSSHTEPMHRLNQKLQHTAVGLRDWTKGICSEAKLQFHMALNVIQRLDVAQEHRELTPLETRLRAALKRKVLGLASIERARKKQASRVTHIREGDANTKFFHLKVNARRRRNTIQRLKKDSGWAVTHGDKELTIHDHFASFMGRPGPRPNELNWETLDITPIDLATLGEPFTEEEVHKAIKEMPADKAPGPDGFTGAFFKVCWEIIKDDILLVFSSIYNLRCAHLNLLNSANIVLIPKKDGAESVSDYRPISLIHSIAKIFAKMLALRLRPHMHELISVNQSAFIKGRSIHDNYLFVRNTIRRYHRQRRAMLLFKLDITKAFDSVRWDYLLALLQRKGFPTRWIDWLGALLSSSISQVLLNGSPGQRIKHGRGLRQGDPLSPLLFILAIDPLQRILSKATELGAISKLRGRTTRLRISMYADDDVIFINPTQNDVATSANILHRFGTAIGLVTNLQKSQVAAIRCGNIDLEEVLQGVPAKRANFPLKYLGLPLALGRLRKTDLQPVFDKISGRVASWRGKNMAAAGRTTLVKSVLSAQPIYLLTALKVMKESLEQLDKQRRRFLWAGTGDITGGKCKVNWAKTCLPTSQGGLGVLSLDKFTRALRLRWLWNEWRDPSKPWVGLETPCDGVDRNLFAASTKITVGDGNTTRFWDSAWINGRRPKDLMPLVYEISKNRKKSLRQGKEDDSWVHDLTLDAGLSITINLLDQLVRLWEAVRNVHLDSEEPDQIVWKFTSSGHYTASSAYHAQCLGAPNTNFNSLIWKVWAPGKCKFHAWLIIQNRVWTSDRLATRGWRNNGHCPLCRCDTETAFHLVAMCRYTKRIWRLVATWAGYQQLEPAQWEEARSVHQWWESLANTPGIPKKGLRSLILLVVWEIWKERNRRIFDHKEMATGVLLAKIKEEASLWALAGAKRLRELIPHSV
>LINE-05_OS_gag#LINE/L1 572-2620 [Oryza sativa]
MDHIPGLPNQRPAVGYATVPMTELMQHELERLRYHGALISAEVEGQETSPREVARALTQQVGIPISDLRVTRHHPEDFFVFFDFPEGQAAAARRGFITLDGGRFTITPWSADRHVHHPNWWFRVRLCLEGLPQYAWNRAGLEGVMGPICLFDRIEHESVQRQNTAIFSCWMWMRNPDLLPRTVLSTFFPPGAGRVTSGITPPLPDEIAPPPRGRLPHVIVHLDEMEDWTPGPPCSPSSGVSGLPSSDLSDSGGPIPTVRTFQWYLGCADGTQPPRRRAAARRGCRAPPQRREDPEDDEDDDGRRRHAEDIPPRRRSLRDVIIGRGRSVESRAAEGARHRSRTPHPSGRQRAHGDGRQGRSRTRHSSRCSCRCRSRRTRSPSSLTPRGQDGTGDAGGATTKVVAVSGQADGDQQPVDALVSLPDPLIQILCSSPLLPFSDEQGDHDPMLPLLAEIAPKSSREAENETKRTGGEEPILGEDKVASAAELGQEKMGHLGPDAQQAPKMDLLAQSTQDDEAQASTGDQPTLVQQADCEEQHQATVQTQPIHGGEGEREKVVLSPLFSQLQPPIILQAPLELAPPGAAKTKGCGRKVVQMPSRRSGRKARFSSVPVSKRAEVRLMEEMGLLTPGEPVGDAAVEAYAKSFDTPLPSHVIAGLRVLTRLDGVHDMPVPGEEGTTATAVV
>LINE-05_OS_pol#LINE/L1 3047-6601 [Oryza sativa]
MLQHLRILNWNVRGLNNPARREAVLEAAELARAGILCLQETKLSSIDQWIGKEIGGNRLSNFNFLPANGTRGGIAIFWDDTIVNMANFSQGTHHLSAMAMTITDNLSFIITVVYGPSEDCDKENFLAELVAAKPPTDTPWLVMGDFNIIYEARDKNNQNLNRRLMGRFRSTLNTLELKDIRLQNRQFTWSNEQGNPILSKLDRILSNSEGDILFSGHSLLALSTSCSDHCQLLLAPMQEPKRKPRFRFENFWIRVEGFLGVVTQAWNEPIQEGHPTWRLSQKLRNTEAALRKWSKQKFGQSKLQFAMVQELIYRLDVALETRTLTAEEHQFRKDLKIRILGLAAVEKARKKQASRVKWLKEGDANTRFFHIKMNARRRKNFIHCLQQDGNTLHTHEDKAAHLHAHFNSILGTRRQRGCTLNWEALGLSTIQDDSMDEPFTEDEIWEAIKNSPKEKAPGPDGFTGAFYKSCWHIIKKEIVDVFASFHNLTGGNFGSINRAMITLLPKKDSPRSVNDFRPISLIHSVAKLISKTLAMRLAARLGDLVSHAQSAFIKKRCIQDNFLYVRNMVRSLHMQRKPSLFFKLDITKAFDSVSWEYLVEMLQWRGFSQRWRNWIVLLLSTASSRILLNGIAGEPTTHRRGLRQGDPLSPYLFILAIDPIQRLLNKATQEGLLSPLSNRAARFRISLYADDAAIFINPIRNDVNNLISILKFFGEATGLQVNLHKSSVVSIKCAEQNLSEVLENFNGQRGNFPITYLGLPLTPGRIKRIHLQPVMDKLQSRLAGWKGKLIQQSGRKTLVTSVLSSIPTYFLTALKPPKQFLTDMDKIRKKFLWAGDQEISGGKCKVNWKKVCSPIKMGGLGVLDLDKFARALRLRWLWFEWECPDKPWVGTTPPCDELDEQIFAAATKVTIGNGRKAKFWTSNWIGHQPLKYLAPALFNHSKGKQRLVQDALTNDKWIEDIRHELSMPLIREFFAVFRLIWDNETNLEEGVEDTITWRWTNTGKYTAKSAYLAQFAGREDSRAATLIWKTWAPSKCKNFAWLVLQNRIWTSDRLQLRQWPNNYFCQLCYRNLEMAQHLFKDCPFTREIWDKIMARMNHNQPFPVHNPDESLVDWWESRTKQQSKCQSKGMQSLHMLLSWEIWCERNRRVFKDKELQIPQLTARIMDEIHTWSACGAKNLARIAP
>LINE-6_OS_gag#LINE/L1 443-967 perhaps nothing [Oryza sativa]
MLHEASVQHSIYSPDNASPRAASPVFVLSSFAEQGTPHSNGVATDVQTQAGPMARQGNRVEEFFSALSTPLQQPLLPAPDVNARRPSRAKVTIPAISSAQCHSERLLCKKRAGAKLETLAQEILSNKFGILDDHASFDDNIKKIYLQRYKKPLSPSSLKTIAELVEKGDARPSV
>LINE-6_OS_pol#LINE/L1 1217-4750 [Oryza sativa]
MSQDNVYLFNWNVRGLNSKAKQDAVKIILQQYGATIVCLQETKIASLNDRVVLNSLGQNFVRQYVALPADGTKGGLLLACNENFFSLSDVVLGQYSLSATVTMREEGLQWSITVVYGPQLEADKVVFLSEIESLQPSMKSEWLIIGDFNLIYKASDKNNDRLNRRMMQRFRGLLDKIQVKELQLPGRRFTWAGEGANPTQTKIDRAFVTTDWDLMFESSNLYLLSSACSDHAPLFLVGNEKRSKFPSFRFESFWLKIPGFLEAVQDSWQRPILATNCLAIFRIKLRRLARDLKRWSRSQVGDIKLQLAVASEVVFQLDIAQETRTLSDDERLLVSNLKNRILALSVLNKIQIRQRSRQTWLKEGDVNSKFFHIKANSRRRKNYIQSLHTPSGIAISAQDKEEELLRFFKERIGTRFQRTSGINWNMMDLPSLDLGDLEEDITEEELKKTVFSMPPEKAPGPDGFIGAFFKSAWEIIKEDLLSAVRSFFDLNTLQLKELNSAFICLLPKKEDALGAEHYRPISLIHSFSKIISKILANRLAPRLCELVSPNQSAFVRKRAIHDNFVFVKNMVQYLHRTKKTSLFIKIDIAKAFDTVCWPYLLEVLRQFGFGNRWLNWISNLLATSSSQVLLNGSPGQSINHVRGLRQGDPLSPMLFILAMEPFHRIIKAAENASLLSPMGGSFDRFRCSLYADDVAVFVKPQASDLSVLMRLLTFFAQTSGLHTNISKTEIYPIRCENINLVSLLANFPGMVKQFPCRYLGLPLHIRKLRKIDFLPLIEKIGSRIPGWKGRFFTSAGRKTLVQSVLSSMPIHHFTALQVPKWVIKRIDRFRRSFLWKGEDPDKTNPGSSLVNWQTVCKPKILGGLGILDLERFSRALRLRWLWLGWKDENKPWAGMSVPCDDTDKRLFQAATTIELGNGTKTSFWHDNWLQNNCPKDIAPLCFKLAKRKQKSVQQELHNNNWLISFRQITSVEEIHELVHLGSMLQGVLLTPRPDDISWNWNESKVYTSKSAYLFQYQGSFVSLDFSSLWKAPAEPKLKFFGWLVLHQKTLTAQNLLRRHWPCNWICSLCTSAFEDTNHLFSECPFFKEVWSLVTSWQHLPTNNVGLSIGTSDWWAQIDCVGSKEQKKAMRGALLTTWWNVWLERNRRIFNNISTSERAVAYIVKQDLDLRSSAFRPP
>LINE-7_OS_gag#LINE/L1 40-3192 [Oryza sativa]
MRGRGERGDLAGDGPTTAAVTSGGRSSALTIDLPPLLPSPAGISKLRLPSPARALNLSQVRPGEAFQNLILHLFHCPVTPIATTLGPSKIIPTPIWLCAAPSKPLNSLYVKNALNFWFSSSFSSFSVSSLGFGLFLSHVANKDVATSLFLAGSSVLKSAGLSIHLTKDSAAKDIQENVTRFLVQFEGSSSVPSLVGEKVVPALQTVKPAFTATSRHIGCSQQSSKTSTPSVPTGPALKSVYCPVTNSFRDALLSQPKPKPPARSATSRLPSRGRKNLTMLNRCFRCLGSDHQVKDCRDPLICASCRRAGHRQDSCRSSMASNISPRRSSSSFHPSTANSTSRFTTRWVRRALNTPAPPPPRLPTAPYPRSNHSSPPPDNLAIVPYVPPLTHVDAQLEDVIAMLESSLCSSPVRSVTAGPLVPMEVSENAVTSSVASPLPDVRNALVCVQDSSISVAALVPVLACAVNDLETVSTEVVPATVSLVSVMPTRAAAVAEVAHATVESVVVPSSVSEDLSPAVNLSSMPPRLRCKNKGFLAWYGACPSSRQPSSVPPQEPRDIFVCSEQLSANPILSPPQDPDSTRSPPPTLSGPSAAEQIRRALAGLSPEGSIHSASLSPGRVPVITSNDTTAAQDFAFGEPDPVNISGDSDDDILDIFIPFVDMRVTAHYATAYVTPPCECPGRVIRKAMQDAHPRFQFTLISACRGAMTLRFIHSQDRDFAVDHQENLTAEGHLVRLERPEDSAARFIQHNTMLSELDCIDFPPEMLFPNKIRNAFENYGELMEVDDQCLYGDEQSSLRLVVLHYPGKRMSPRFRLRYNLGIVCTVYVRVLRTWELAMNVDEDGNYIKHYEQFLFPHQLDPPRSGPTVGPEAELDNLNQAPSNQISNNQGLQNRGRLLAILPAASTVFIEEISDTPEIFVPPSIHSAPSSIHDCLQDLVPSDTENEHELSARKRRRQKKRTIDSDVKRRYSERLAAKEGHLYISMESKAARAKKLKEQLAKCSSKLNDAVHKHNLLDLNFKTTPKALEDLAIACSLNDHDIAQLRKVFSSVD
>LINE-7_OS_pol#LINE/L1 3416-7009 gi|31044099|dbj|BAC15618.2| unnamed protein product [Oryza sativa]
MNRSFSVLCWNVRGLGDKNKCDIVKNSISDCNPSFVLLQETKLQNIPPEKAKTILPPNLANYDFVGSYGSRGGMLTAWNADFTKTSFISRHFSLTISFTSTFTDLSFSLTNIYGPAELDQKQDFLHELLEIDPLIQGPRLLIGDFNLTRSPSDKNSQNFSTGLAAAFNQTINSLSLFELPLPDRLYTWSNKREVPVLARLDRAFFNNAWNNTLPNTSLSSCTRTTSDHVPLLLTASTSIPKSKTFRFENHLLLDRDFLPSVMHRWPQQLNMNDPAACLAAKLKQTRSIIKVWMKEHRKRSSLNEDCKFTIDLLDYIEELRPLNDGERCLRNLVQEKLFQAIQSKVAYWKQRGKVKRLKIGIDNSAFFKAHASKNYRNSRIRSIKHNGAEIADHNGKALLLHSFFQHFLGSDCQPLWDFDLSTLYSEDERDYNLLASQGLQFSTEEIITSIKGMNSNSAPGPDGFGPSFYNSAWNSIKEDIIKLAASFCSNSVQLERINRAHIVLIPKPGKENTVDGYRPISLQNCSVKILSKVLANRLQKVLTRMIHLDQTGFLKGRCISENLIYATELIQACHARKCKTLIIKLDFAKAFDSVLWTSLFQILAVRGFPNNWISWIKSLLQTSKSAVLLNGIPGKWINCKKGLRQGDPLSPYLFILVADVLQRLLEKNFQIRHPIYQDRPCATIQYADDTLVICRAEEDDVLALRSTLLQFSKATGLQINFAKSTMISLHIDRSKESSLSELLQCKLESLPMSYLGLPLSLHKLTNNDLQPIVVKVDSFLTGWEASLLSQAERLILVNAVLSSVPVYAMSAFKLPPKVIEAIDKRRRAFFWTGDDTCSGAKCLVAWDEVCTAKEKGGLGIKSLKTQNEALLLKRLFNLFSDNSSWTNWIWKEFDGRSLLKSLPLGQHWSVFQKLLPELFKITTVHIGDGSRTSFWHDRWTGNMTLAAQFESLFSHSTDDLATVEQILSFGIYDILTPRLSSAAQNDLQELQTILQNFSLTNESDTRLNNRLGNLTTKTIYDLRSPPGFPSPNWKFIWDCRMPLKIKLFAWLLVRDRLSTKLNLLKKKIVQTATCDICSTTDETADHLSFNCPFAISFWQALHIQPIINETKYLSQLKAPATIPTRHFQSFFMLCFWVLWNHRHDVVFRGRPPSIASCLQRGISESSLWAETFTPDDRFVIDVWKGVFSSSLQTLHPM
>LINE_LS_pol#LINE/L1 gi|19519|emb|Z17425.1|LSLINERPT Lilium speciosum for two putative cds's 835-3541 via tfasty with 8096424_Osa, 11 frameshift and 4 stopcodons. [Lilium speciosum]
GGDFNSTLSPDERVGGSVELRDLRAFGDFVSDCSLFDIPLSGGRFTWTNGHHFAQLDRFLASDTWLISHPNSCLRVMTATVSDHCPIILMAPPRPTPIIRFEAVWIGEEGFGEGLARAWRRDHXSLRAALNLSSKVRALRVFCRRWRGQLGRQRRYTDHLISLIEPLEVQREGGTLPPGGHSNWGFLHSVLDEEHHREEIYWRQRSGCWMEEGVRNTSFFHRVNAIANRTPSTVWSALMSSILTRPLSWGWATQYFRTALSPSNADSSVCLGRSGPVRPWPSSMDDPFTLEEVRAPVFGYAACGSTGPDGIPFLSISRFWSLVGVDLLAHLHDFYRGGRLDPINHSYLTFIPKPGRGKRVEDFRPITLANASYKIVIEVLANRLRGVSVNLIHDSQSAFVPGRSILDSVALAEELFATVREEKMAIKIDFRWAFESLNWNFLIECLRVKGFNDRWIGWVRSCLGSSRATVLVTGQPRHYFRVRRGVKQRCPLSPLLFILAAGVLGALIRGASARGSFPWSSGGGFVWLVSGFQFADDTLIFSDHPQEAENLLSSCLVLAASVLELNCAKTQTLLLGTIEERAADLASLRCSRGTLPMTYLGISQSDRPLPRNCWDGLIRQVQDRLASWQNRSLSWGARLTLINAVLAQISTFLFSYHWRPESVLRHLDGLRRSFFWRGREGYPGLVLAGWEGICRRGEEGGLGVTNLRDFNRALLAKWLWILVSVQGVCGRWWXGNVYFERHPLSGLTGRTLGSISALWRGVTRVIAPFRPASPIMWVRGRWSFWEDIWLGPTHLGVDSTPLRCPPGYRGRTASLYLGARGWSFSTFRTTGGEALAQLRSLLSLLAGTSPISGERDVPHLRLEGNGIFSVRSFYSFLHTGGLLSLVADTLWSVRAPAKVLVFGW
>MIUSE1_TM_gag#LINE/L1 130-2229 [Triticum monococcum]
MGSDVGSTLGLDFSRGLVFADKVFQPTGFTVHPMDDTGFFTMVISFGRHTFRLHEDSVAAAIEAAIGGSTIEFMVFPLKDKVFGFQVSCKEVAMIVLKLRSFSCDQFKCYFHLWGNGGPNWGREFKLWKLECDAEWILVSPSKRRAALGMLAMHSKPQKSSVRSSHGQAKKLSFSTFQSYPACRGYRYPAMQDCIQTIEDAGYTLPEHERVVIHPPPPVVLRWTSTAPAISFGTVGNLPPYAARPPSISGGNLATLNVDVSPHVGPSSTRATDQVGPVLPPGPSTIPSSQQAEAEFDNLVSGMVDEILTCQKCLRKGHFASACTSRSRCNSCLRIGHVARDYHRFAQILGLVWKPKPGNVATSEDPSASTENISLTQLLPNLDSSCTSALTLSPRSISPGPKTPSSAPPETPPLPESSPPAASSERAPPMANFHLDPMLYVPAGHHVVDGGEARVPRTFVTPHTPIVRRHEEFMLAEVMPIPPPDQIGAAREEVVQWLQAHGILVRSAQPWIRSVGLFELRDAAVRFSLLQMPPQPLGNDRFVRFMKHDEGESFRGVQGFRQGLLMFLGIPLDLRNEIGLRAAVNTFGKFHHWISEDPYLVRSLVFASFPEDILVPRDVVFMEYAAWGGARVSWTSPLYIPGANFAEQMPQDEDWMPINGNPHPQPGVPFPEMPPFVLPPFPALGWNDVPPPPAPAQDQ
>MIUSE1_TM_p2#LINE/L1 2290-3093 [Triticum monococcum]
MVFDASAQQNSTQSSSDVQLQEPPAIIDRSVSENIAADVEDTSNWAIVVYQPPLVVDVLALASPVIKVPFGPPLPPEMIWRRSFENLLNAPVTFEIPQPLMPKPLSPVKRRWSLAFQIDDLPLLTWKQPDLARPVARALFVDEADETAPAVVPTSQVRARSRRPRKTMAPTPLVETSVRRCTRSSAQRDGFKPTFHELVLQPKKKKPRAKPIAAEEPSTTASEGVPPPTPISHLQAIGKELGIDAALLTEEALMVDPTATTNNASNE
>MIUSE1_TM_pol#LINE/L1 3261-6875 [Triticum monococcum]
MNSLCKSWNVLCWNVRGLNSESRQRAVRQKIDESHCAIACLQETKCASFDSRSIKGFCPKRFDSFAFAPSLGASGGIVVVWNSSVFDGSLLEIQHFAIVIEFVSRQNNEKWTLVAVYGPCQGEARDNFVNWLYHLNIPVEENWLLLGDFNFLRSQDNRNLPGGDLNDMFLFNEIIGHLGLLELPIKGRSYTWSNMQDNPLPEQLDWFFTSMDWISDYPMTKVRPLAKTTSDHVPCVVSIKTSIPKSNIFRFENYWLELEGFMDCVDSSWQRTSRKGHITARIADKFKSLRMCLKRWQMSISKLKMLVCKCNKAILLLDELEELRPLYRHESNFRKVVKTHVEKVLHLQWLYWKKRCTIRYIKVGGENTKFFHAMATERHRRNSIASLKLPDGTVVSDHSQMEGVIWNCFKNRMGSSRGIHMGFDLSSLIAPVEGLDVLTKPFEKEEMDKIVKHMPVDKAPGPDGFNGLFFKRCWHIISPDFYEPAQAFYDGTAHLENINDSYITLVPKKQSPEEVGDFRPISLTGMGLKFLSKMAANRFQEVIMQCIHKNQYGFIKSRSIHDCIGWTFEYLHQCHQSKRPIVILKLDFEKAFDSLEHEAIVQILRHKGFNEKWILWMKQLLSTGTSSVLLNGVPGRKFKCKKGVRQGGPVSPLLFVLAADLLQTVINDMFRRGILHLPIPCHDQDYPVIQYADDTLIILPADKVQLLALKDMLQVFSVSTGLDVNYHKSFIIPINVDNAVMTDLATAFRCQIGKMPFTYLGLPVGTTRPKMVDFMPLVDCMERRMTASSSFLNQGERLQFLNSVLSSMPIFFLSSLAVPAGILKQLERIQRHCLWRKNRAEPAQSMAAWELICRPKNKGGLGILNLGVQNVALLLKHANNFLNKKDIPWVSLIWDSYYHGRVPQGTSDCGSFWWKDICKVLHNFRDCAWVQINEGDTTLMWSDNWKLDDQKLQLQFRFPRLFSYVKDPWISVKDFLDSQDMYHHFHLPLSAQAFDELVILQSLLENHDRDNGSKDIWLWNGTAKGYSPKLFYSHVFVAQSFNPLTAWIWKSSCTMKIKVFAWMLIMDRLNTKDMVERRHWHLEDGVNCVLCPLQARETRDHMFFNCNFSIRVWNYLQIDWSSGDSMTELAINAKRSFRKPFFTEVVFVACWNIWIVRNAKVFRHERAGFNKWRAAFLHDIALMQYRIKPAYKDDLLKWISFLPP
>OSLINE1-2_gag#LINE/L1 198-3341  [Oryza sativa]
MTGRPKPVHAVTPSPASPIRSKFWATPDDDDSEDDDEAPTPPPFTGSSATSSPSTEEFVNEASAAGFSRAQLVMAEQQLQAGKNSDQRLPEVILSTLLRRKLVGPPWRGPLPAERVSPPRTLGDCLASASRCPRRRRRDGRRCGVPRSSSSPEAGTVGSKFVIPKSLGVSNDSDQLLRQGSRPDFPPLCGAHSSVSTAIASAGGEVRRPAPSASQSDRIRLGPGKWFRPTKGLISLFARSGLKPRSRKLQPPSRPTATISYAAVVRRGKAMAAHGGRGFGGQGGGRGWGFAQGFHPGFDGGRGRGRDQRGRPHGHNGGGFGGGYGGGYGGGGYGGNSHGGYGGNRNRRGWQGGRRFAPAAGHAAGQFHAGGGVPGHQAGGQAVVGQLQQQAAAGQFQPAGFQTAGLADQQPAQAPFQAPLAGQQPTQPAAAGNQTREAGAVLFQQVSQSQKAQVAAPANGGGLGTSQVGTSALLASSQAAPAAAPAGSTRGAIIGGSAQDPAATHLEGFMATKPEPAQAGKQKSKGKPYCFRCYTKGHTLDDCTVLLCCDLCFENHVLKNCPNVKKTNAIAAPCGYAVEGMGFYYIPMNDNPKSNVEEHTVLVRVLDGSFTVDQLTVELDRLLPAKITWEIGLKGSDAFIITNFPSELREYAVNWGPMDTKTIKGKIRFEKGVENDVNRYEIDKVWVQFRGLPSELREFPIIWAIGSILGVSKAVDMRFTKTFGRSRLKVAVLDPNRIPDYVDVVIGDFVYELQFRMEIDMPVGEPSVIDMDSTTDNDGDNDGKGEDPMEEDANKNNGTPDDLPKDAAPENAPADQLPKHGAGAETGKLKEKTVAKSDPGKNKRPVAVLSQGISLEGSIQWQANMLGNHGSSSKPVVHKGETVSPLRSSKRNVSSLEQDSMEKATKLKARKNLDSTAAKGNKPLPSSFHNLDDSVILATTDSLGINLGDDVSSVLDSVHSLKQIELQRFNDFCSSSKEEKRSCEENSSVCSEDNVDIDALNTICSEIAESLGDGGYDPLCLHTPLSQIKRRQPKGKQNKNKSERSKT
>OSLINE1-2_pol#LINE/L1 3338-7006  [Oryza sativa]
MKGIFWNCNGFADPKKYKFLSDLTKEQNLDFIALSETGRASFPQSTLNNICAGRDFIWHCMAPRGRSGGMILGVNLLFLDIGEIEEGDFFIRFKLRQRADDFKFNLISVYGPAQSDLKGHFLSELVRVCSKETIPTVVGGDFNILRNPQEKNNDTFNDRWPFLFNAVIDTLNLRELESSGRSFTWANHLQNQTFEKLDRILVSTEFETKFPLSTVSILTREISDHTPLLYNSGGASAAYQPQFKFELGWLRRDGFSDIVKEVWQGVSIEGTPLERWQRKIRRLRQFLRGWAKNITGAYKKEKKELLDKLDTLDKKAEHTILNEFELNVKHVLNDRLAELLREEEIKWYQRAKVKHLLEGDANTKYYHLLANGRHRKTRIFQLQDGNEVITGDAQLKEHITKYFKTLFGPSQTSSIFLDESQVDDIRQVSAEENESLTADFTEEEIKCAIFQMKHNTAPGPDGFPPEFYQAFWTIIKDDLLALFSDFQQGSLPLNSLNFGTIILLPKQKDVRTIQQYRPICLLNVSFKIFTKVATNRLTSVAQKVIKPTQTAFLPGRNIMEGAIILHETLHELHTKKQDGVIFKIDFEKAYDKVRWSFLQQTLRMKGFSHKWCSWVEKFTQGGNVSIKVNDQVGNYFQSKKGLRQGDPMSPVLFNIVVDMLAILIARAKNADRVEGVIPHLIQDGLSILQYADDTVIFMSHDVAKAINMKLILTTFEQLSGLKINFHKSEIFCFGRAKENEAFYSQLFGCKIGSFPFRYLGLPMHTRKLNNKDWQEIKNRIEKKLGGWKGKLLTAGGRLVLINSVLSSLPMFMLSFFEIPKGVLEKIDCYRSRFYWQNDQHKKKYRLAKWTVMCQPKIQGGLGIPNLEIQNKCLLSKWLFKLLNEDGLWQELIRNKYLKEKPLGCCQKRATDSHFWKGLMSIKDTFLGLGSFKIKDGSQTRFWCDTWLGNKPLKDRFPSLFNIVRRKNDSVAKVLSSSPLNISFRRNLVGANLSRWNRVLASIQEVLLQDGGDSFVWSLQASGNFTVKSMYAALISNGIRVSQDIWQIKVPSKIKIFLWYLKKGVILTKDNLARRNWHGDLKCAFCHQPESIQHLFFDCYIAKFLWRAVHILFGISTPSNLVELFQQWSKGGNKKQNTLLLTAAAALFWTVWLTRNELVFDNYGPKSFLQVLFRGTHWLRQWAKLQRHEDLRSQLIAASQHLESSALQFFSSNGWLSARHIGL
>OSLINE1-3_gag#LINE/L1 75-2075  [Oryza sativa]
MANQGGGAWRGRFNPRPMRNFGEGRKPQAPTFSTGGESLQGIGGGALGDQAKTMAARGATKQQYRPIQHKEPAKETEKGDTSVLQPEQPLQSNPRAGNNPIPQRFFCQRCKNVGHLARDCNVSVFCINCAKPSHRTEDCLYDKQPRPVAKLVGYGAPGLGCILIQNTRPDSPKEHANPLAMVSIVFGREFTESQLEQGFTQQFKWNWQWKAKAMPNGTFQMRFPNKIKFEELSNFDYFNVKGTDVQVNVKEWTQESDAVGKMHTAWVKVSGIPDAMRGYQALYEVGSNLGTVMEVDMATFRASNVIRFKVGMMELESLPLKLILTTPKGLLYQAHFELEEVVEQGWFNESIFEEVQVGSESFLKSGQKSGQRDGKQIMEMGDKISPGILLRGNGSKDDPTDMLCPTTMIEESQIKCAQILRDRALAFQLQEAEAKSTTDCGIEVGMTSGETILTEETQVLLTQDKKWEQAGNRGMAVNTIDSEATEVGDEGIDREDERVHLGDSEDYMDSQESEGSFAKRLGINLVEDNTGSQEEEMRRSKRLKEKEDLKPQDMAMQRKEAQNAFVNKGQNTVPSIINESNVSLINMANILGVSLGCAIEDVESNLNLIKNLESARINLFMKEGEADKNAELKKKEMEGMSTDQEWSDDSSDNSTLDEIEQMLKQV
>OSLINE1-3_pol#LINE/L1 2177-5833 (1 stopcodon) [Oryza sativa]
MKGLFWNIRGMGNIEKTGHLQDLIRDHKLDFVAILETVKHDFSTELLNKLSSGRNMHWCWMAARGRSGGILVGMDKDKVNVLNEKTGKYFIRLKLLNADNKNVWDFMAVYGAAQAEQKAEFLTELAKEFYSQGSPLVVGGDFNILRKESEKNKIGGYTKxSFIFNSIIDQANLREVQMSGRQFTWCNFQNSPTLKKLDRVFINNEWEDIYPLTTVRTLVRAMSDHNPMLMETGQNMAPQSIFRFEQSWFLREDLTSVVEEIWNSDYRGDSMERWQKKLKFLRKKLKGWNKNWEGEYRRRKKEIMDKIEEIDILAETVGVDINIMNNRRALDAQLRYVVREEKIKWFQRCKEKEVLEGDCNTKYYHTKANGRKRKSLIHSLVQEDGVISGQQNLLSYITSFYKELFGHSKENNVSLNMEGVSKVKKEDIVELTKPFSLEEVKKVVFELRKNRAPGPDGFPGEFYMKFWDIIKNDLLELINDFHKGLLSVERLNYGIVTLVPKTKDAAQIQKFRPICLLNVTFKIITKVLMNRLDRVMMYIISKNQTAFLKNRFIMEGIVILHELLNSLHSKKQSGILFKVDFEKAYDKVDWVFVYRMLKSKGFPDLWCDWVMKVVRGGKVAIKVNDEIGPYFNTHKGLRQGDPLSPLLFNLEAEALTLLVQRAESSSLLEGLSVSENNKVTILQYADDTIFMIKDNMEHARNLKFILCLFEQLSGLKINFNKSEVYCIGEAVERENVYSKIFTCKVGSFPMKYLGLPIHKKRLLNKNWKSAENKMEHKMGGWQGKLQSIGGRLILTNASLSNVPLYMLSFYKIPQGVKERMDFFRRRIFWQEDQGIRKYHLVQWPIICSPRDQGGLGVLDLETMNTALLGKWIWNLENKEVWWQDILRDKYLRKKPLSEVKNKMGDSHFWQGLLEIKNTFYKFCTKKLGDGKRTLFWEDNWIGGRPLNEQFSDLYNITNTKHITVDKALQGGWDKVTFRRTLHGNRLEDWNRIKHLCANIHLQNGHSDKLWWNFNKNGSYTVKSMYRALKLQQFSCPLKKFWYIKTPLKIRVFLWLFLKNKILTKDNLYKRGWRKGDKICQFCCREESIQHLFFECPLAKLIWNVVICALNLKPFSNKTQLLGPWLFGFDKNTKNLMMVGITAVIWAIWKTRNRACFDYVLPKDPTEVIFLVCNLIESWTVLQKSEANRMELGVWVVRQVASDVYNSRYGWRPHVRRLE
>OSLINE1-4_gag#LINE/L1 2-967 (fragment) [Oryza sativa]
MNFTRRYDVARLQVLVLDPSLIPDVVDVVIGDHLYELSFIVEPDNGSDEPVPMDMENLDDGTLEKEEGNLNQDLGKGSGGDPGNDSLIGSGGQVSERGGPSIPAAHLSLIPESDGLTVSDEEFDGLDEDSVMVKKVNTQQSLGEKLAAIPEAVISPSRKSKRRASDSDQLVLQRAEKLKADKNLDNLQAKGNFHDNVSFLQFTNEQISAALDNLGVITLGTNFILDDVKNDLKSIEEKRLSKYVSSSVNQVHTSNVDSEILDDQVDDNSLLQHLCGELMEEVMDFSAVDDNYSQTTLNSLDTSPNSKKKTKRGKKKKNIFK
>OSLINE1-4_pol#LINE/L1 964-4635 via tfasty with LINE-1_OS_pol, 2 frameshifts and 2 stopcodons.  [Oryza sativa]
MKGLFWNCDGFKDPKKHKFISDLTKEHHLDFIALSETIKKDFSPAVLKNLCAGKEFLWHCKPPRGRSGGLLLGINLINVDIGLIDEGDFYIKFHLCNKVDKFKWALVLVYGPAQSEFKDQFLAELVNMCSHETLPILIGGDFNILRSSDEKNNDNYDDIWPFLFNAIIDGLCLWELQMSGRKFTWANNLVNPTYEKLDRVLMSTEWEHKFPLSSVVALNRDISDHTPLLLNTNTSSLSNAQHSFKFELGWLLRDDFVDMVKEIWSSVDEGNSAMERWQAKIRRLRQHLRGWSKHTSGLYKKEKKKEILDKLDLLDKKAETMLLSQEELDFRWFCRNRLSTILREEEVKWYQRAKSKDILEGDSNTKYFHLVANGKHRKTRIFQLHDGDQLINGDANLKSHITTYYKGLFGPPYDSTLQFDENKFADIPQVSQLENEALTQVFTEKEIKEAIFQMEHNKAPGPDGFPAEFYQVFWNVIKCDLLDLFKEFHNGTLPLYSLNFGTIILLPKCVEAMTIQQYRPICLLNVSFKIFTKVATNRVMTVAQKVISPTQTAFIPGRNIMEGVVILHETLHELHRKNKSAVIFKIDFEKAYDKVKWSFVQQTLRMKGFSPKWCEWIASFIQGGHVGIKVNDQTGNNFQTHKGLRQGDPLSPILFNLVADMLALLIKRAKDNGSLHGVVSHLVDDGLSILQYADDTIIFLEHDLQQAKNLKLILSIFEKLSGLKINFHKSELICFGQAKECYEQYSNIFGCKLGSFPVKYLGIPMHFRKLCNNDWKVIEQRIEKKLSSxKGKHMSVGGRLVLINSVLSSLAMFMISFFEIPKGVLQKIDYYRSRFFWQGDDHKKKYRLTRWDIICQPKExGGLRVHNLEIQNRCLLSKWLFKLINENGVWQDLLKRKYLYNKFITQVDRKQGDSHFWSGLMKAKKTFLTMGSWIVNNGEHIRFWEDRWLGNTAFREKYPSLYAIVSRRSSSVASVMTSVPLNVSFRRALVGQNLTLWHELCASIVHIQLNNTSDYFRWNYHQNGQFSVRSMYLALINNGYIDRNKLIWKLKMPLKIKIFMWYLLKGVVLTKDNLARRNWTGNLRCCFCTKNETIQHLFIDCHFAKFIWRAVQFSFGLYIPTSISHIFYDWLQGVINKKSKLILVGVSALCWALWLSRNDRVFDKSPTITYMQVIFKATYWLRLWAQLQKCDEDADFLIVACRKVETTVMQLFANHGWRFTNRLE
>OSLINE1-5_gag#LINE/L1 3-854  (fragment) [Oryza sativa]
AAYTHEGHVTQPRSSSIKHSTFGHVRSPCTPLQVYRRKRSKSLPPLSSSHTPVLIASTLIPPICISNGLVNLEEKTEGLRRSDRCNAAISSNGIAAADEDSTTKAKCRAAMRNLDGPMMSKTADLAKSSLSSTSYLDPSIGMHSNLPSSSIVYLSNEQFSSNLGKIGVSLGSGSENVAFSVNAIKHMEVDRWKVAPKPKMKAKVIDEANDQNPFHDGDDEDAEPDGILLAHLVKEVSEVDLDDAELSRTICDLIATPRKSKSASKKKGQSTRTKSNKNKKGCK
>OSLINE1-5_pol#LINE/L1 851-4524 via tfasty with LINE-1_OS_pol, 1 frameshift and 1 stopcodon.  [Oryza sativa]
MKGIFxNSRGLHDLAKYWYVAGNIKEHNLDFVALLETRKNDVSKTNIDCLASGADFVWHCLPPRGRSGGILLSINAAVMDLSLIVEGEFYVKFHLRNKEDRFEWILMAVYGPAQDEFKSSFLAELVRACQQNPHPTLIGGDFNILRSSIEKNNKRYNDRWPFLFNAVIDSFDLREIALAGRQFTWANSLANPTYEKLDRVLMTTEWESKFPMVSVHALEQGVSDHTPLLLDSGSTAFIGNHKQFKLELSWLTHDDFHDRVVKIWNKPVKGRNLVQQWNNKMSALRKHLRGWAAHMSGMYKQEKKSLQSTVDELDIAVEVRVLTEVERDQLTQARDRLVMLLREEETKWFQRAKTSDVRLGDNNTKYFQMVANGKHRKKRIFYLEQDEGKIEGQAALKAYITSFYKKLFGPPEDNPFTLDESRSGDISQVTQAENEFLMAPFLEKEIRDAVFDMEHNKAPGLDGFPAEFYQKFWEVIKHDLMNLFHELHTGELPLFSLNFGVITLLPKVKEANRIQQYRPICLLNVSFKLFTKVATNRINSVADHVVSPTQTAFMRGRNILEGVVILHETLHELHRKKLNGVIFKIDFEKAYDKVKWPFLMQALGMKGFSTKWISWIESFVSGGSASIKVNDDVGPFFQTKKGLRQGDPLSPMLFNIVADMFVVLINRANVDGQICGVVPHLVDDGISILQYADDAILFMDHDLEKARNMKLLLCAFEQLSGLKINFHKSELFGFGDARAMEDQYTELFGCSSGEFPLCCLGIPIHYRKLRNADWKGVEERVEKRLSSWKGKLLSTGGRLTLINSVLSSLPLYMMSFFAIPRGVLKKLNYFRSRFYWQCDDQKKKYRLTKWSIMCRPKEQGGLGIHDLDMKNIALLSKWLFKLLSTDGVWQQLIRNKYLGSKPVSQVEFKDGDSQFWASLMKVKRDFLLFGKFIMRDGAQIRFWEDKWLGEAPLQEQYPCLYNIVRNKHDTVAKVLQNYPPNVSWRRDLIGPKLVAWNNLLPRIANLVLTQDQDKFHWNLTQNGEFSVKSHYLALVHSDLPNIDKVIWKLKIPLKVKIFLWYLRRGVVLTRDNLAKRNWQGSKNCCFCHKDETILHLFYECRFARFVWCIIQVATGLFPPRGVSNMFGNWLRGIRKDLKSLILLGAATICWPLWLCRNHMVFDKRKISSPLQVIFLTIHFLRTWAILQKPGSWDLVAAACQRLEQVVRECFTKGHGWRSSLRIGAP
>OSLINE1_2_gag#LINE/L1 31-2127  [Oryza sativa]
MFWRELGSGRHPGDWVAAAFSSHERRIWMEVLSDLLRKSAEVTSAICNWVGDQVNRAGSGWIWPNAFRHRAGWRPIMGQWNPNPRRRADMKFGRITPVVKFWYGKFYRGHTKDIIDVDLFWRSTVKEKDSELLGYKFRYKEGIKSKISLGSQISSAGFNLGFGHLALVLKVMAAAEGGGDQGTINAIVAHPKPSGASSLPPGSRLESELQAVLVLNQSVDGIHDQATGSRVLPSSGNHDGGLASNNLSSQGPTVFTEGEVVDEEEDAVEIEIEENEVQKAGQWTILARFYSLKFPNQSALFEDMRRAWRLRAEMSYKSLKDNLFIVSFNAEGDYNFVLQGDPWLHRGDALLVAEFNGLLNPSMVNLDTVPIWVRIYDLPLVMMNRARGELYGSKMGKVREVDVQEDGCNKHDFFRIRVDLPVNRPLRRMLAIKIKVQGKEETRRFHLRYERVPHFCFFCGFIGHSDKECEKRLTNENEPLVFSAELRCSPLKPFERKVGKVKAVHSQGVQRKLSFRGPGSVSSSSAGIRQDAKRYEDQPTRVDAFDGFDIREGKGEDSIDSQLADQTNMLHVSEVSSLGQKKGKDLVSKETSSIPSMEMIPAIRDLNVQQVSFGDGSTEEFGSPTKRKALPTTKSSGIVQQAVLEYGQRGAEETASSTRAMKRLKKGVEANTGVEDMEATSLGAAGKLAGPMRGSRQEK
>RAVLIN2_MT_gag#LINE/L1 A poor reconstruction with (fictitious) introns  [Medicago truncatula]
MAQRGNPSYCFCFEKLSVVCLEEFRNLNPGVLKLFAWSQDFKPNLQNNSTAQVWVRLHGLPQEYWRPRIFFAIANSVGTPICTDSASTKPMIDRTFGQYARVLVDMDITKDLRYNVLVERKGYAFFVELEYENLPDYCVHCKKIGHDVEICRFAIKTVQARTASKLINRWEKKNVAIIVEEAALKEVEVINKNKDKQKDPAAEEGMEKKRSMMIVKKVKQALKALSLLMLHNSTMMSMIKKMLKLNSPERVQNDMEFLKQSWANIVDDTAAEDRLSEELEQRQAAVEEEQQHIFAEVSASYNKKSEKKQPKRRESEDCSASSQS
>RAVLIN5_MT_gag#LINE/L1 9-1680 via tfasty with LINE1C_MT_gag, 1 frameshift and 2 stopcodons. [Medicago truncatula]
MNSDFVFSAHDTTNMQQSKKPPDPSKPSTQKLSFRDKLLESNKEIPIREKEDMIEKKLVRIELEDGNRLLPKIYIEPQVFQELCTTWKDALVVKLLGKSLGYTTMKERLQKTWKLQGGFDIMDNDNGFYMVKFDQAADKEKVITGGPWLIFDHCLAVTHWSPEFASPNAKVDRTVVWVRFPGLNLVYYDESLLLAMATTLGQPIKVDTNTLKVERGKFARVCVEIDLTVPVVGKIWVNGHWYKVQYKGLHLICTNCGCYGHLGRNCCSKPPAAEPVTLNHLKTTGDHHTQKTNPTQSQTDPHQNPTDPQAIHSRSLSAVTQSLPADHNRTTLNAGLMETTSEKGKSTISNEGNHLLHGDWLIVSRRKKFHNNSTLNAPKTVTQKNNRFNALSSLTNQNLTDPTNHKIPQWSKTNETSRGRTNFGPKGADMRTHICQSLRFSSANPLAILKPLLSLSLDPPLKLRTRLFPKSLQLNLKCLIKCPTxTKKSRQNYPQHTNHSHHxPYIVFTPPFNHSDQNHTAMDTISPSEMLDDTDVSLANSDDTLENSNSKGEDMVT
>RAVLIN5_MT_pol#LINE/L1 1723-5798 via tfasty with ATLINE1_1_pol, 5 frameshifts and 1 stopcodon  [Medicago truncatula]
MEALLDTTILSWNIRGAQNSKAKRQLKELMRKFRPSFFAIYETHVPFTRLSSFWTNDGYTPEHIIEANGHSGGIWLLKHSADNTTSTITDSNPYSITFTISLGDATTTCTCIYASPNSTMRTTFWNYLSNLNRTITGPWMLIGDFNETILPSEQRRGLFNHTRATLFSNFMNHCNLLDLTTTGGRFTWHRNHNGLRILSKKPDRGIANINWRLSFSEAFVEVLCRTHSDHNPLLLRFGGLPLARGPRPFRFEAAWIDHKEYADLVSRAWISSNHNTTVALNNVRENSISFNHDVFGNIFKRKKHIENRLKGIQIYLERVDSLRHSLLEKELQQEYHHILFQEEMLWYQKSRENWVKFGDKNNSFFHAQTIIRRKRNRIHRLQLSNGIWSSETSILQDEAQRYFKNLFCSTVHHQNRHFHVGLHPTIDDDEKNSLTKPITKEEVSAALNSMKPYKSPGPDGFQCIFFKQYWHIVGEDIFQLVSKAFQTGFFDTTISDTLIALIPKIDPPKTYKDFRPISLCNITYKIITKVLVNRLKPILNNIIGPYQSSFLPGKGTSDNSIVLQEIVHFMWRSKQKKGFVAFKLDLEKAFDNVNWEFLNSCLHDFGFPSATIKLIMHCVTSSTFSVLWNGNKLPPFKPTHGLRQGDPLSPYLFILCMKKLSLAINNAVIQGDWDPIRISTTGPHLSHLLFADDVLLFSKAKNSQFRFIKDLFDRFSQTSGLKINLSKSRAFYFSGIPHQKIANLTSISGIRRTPSLDKYLGFPILKGRPKRSDFNFIIEKMQTRLASWKYKLLNRPSRLALASSVLSSIPAYYMQINWLPxSICDNIDQTTRNFIWKGANNKWVPLVGWKKIAKHKHLGGLGLRAAREVNTCLLGKLVWDLTQRNNKLWVNILANKYSVGHNFLYASTTSSSSPTWSSIIRAKNVLFSGYSWRAGSGSSSFWFSSWSNFGPLGSLVPVIDIHDLHLTVKDVITTNEQRTQSLYTPLPPAVSKFINNSNFRFNAAIEDVFIWHHNTNEIYSAKSGYNWLLSLQGTHDVTQSWSWIWKHKISEKCKFFIWLACQNSIPTLSLLHHRNIAPSATCTRCGDFEETIFHCVRDCKFSRDIWQHLGFSDHSFFAAVCVRDWIKDGLNGANSILFATSLWWIWRHRNSMCLSDEAMPLNRLTWNIMTFVNDVKLCFHQQHPVTESVRHIRWNNNNFDCAILNVDGSCIGSPTRTGFGGLFRNNAGFYLLGFSGSLPSSADILEAELSAILHGLTLALDNDIEELVCYSDSLLSINLITGNSSKFHVHAVLIQDIKDKLSQLNCSLHHTLREGNHCADYFAKLGASSDAALLLHSSPPDDLRPSLRNDATETLFPRP
>RAVLIN_MT_pol#LINE/L1 72-3588 via tfasty with ATLINE1_11_pol, 2 frameshifts and 3 stopcodons. [Medicago truncatula]
MEEFLNGQANNLYHIPTRAEYTWSNRRGDGSIAQRLDRAICNEQWIVVLLLVQPLIKHNLTIILFYCSKxPLSFASQFKFLQMWTPHDDCKKMITSSWNTNIVGCHMYILNYKLKNLKTKLKVWNKTVFGDVHXAVKIAEQNLNQIQNDIDLQGFTDTLLDQEKEAQINLELCLKxQEDFWREKAKVNWHLNGDRNTKYFHRITKIKKTSKLITTLQDGDNMITDPDQIANHIINYCKTLFSTNFVLQDQLLVDEVIPTLISDDKNAVFTTLPSSLEIKXAVFDMNKDGAPGPDGFGALFYQTYWDIVKKDVVNAVLEFFTRDWILPNFNSNIIVLIPKIPDATSMGQYRPIALANFKFKIITKILADRLAQLMPKIISTDQRGFIQGRNIKDCICIASEAINFFHKKSYGGNIAFKVDISKAFDTLDWNFLLHVLKSFGFNEIFCNWIHTILQSANLSIYVNGKPDGYFNCTRGVRQGDPLSPLLFCIAEDVLSRAISKLVDQGKLELIKGTRXVNVPSHSLYADDIMIFCKGKNASISNLIDLFNIYALESGQIINSAKSIMYPGSISVSRIQQLSTMLGFNIGSFPFNYLGVPIFKGKPKASHLQPIADKIKSKLATWKASLLSIAGRVQLVKSVIQGMLMYTISISILGPRLCVNDVETWSRNFIWSGDVDKRKFVTVAWKKVCKPFSEGGLGMRSIYTLNESTNLKLCWEMLNSTEDWAILLRSRVLRGRKAISHHIFSSIWSSIKNEFNDINNNCIWLLGNGQNINFWLDNWCGAPLSQALNIPHAISVHLTSTVSDYIVNGEWNIPETLSQMFPLLSQLVQQVTIPLEAKDDKIIWKHSANGYLSFKQAYVFKRNNNEDLKWAKLIWSTDIPPSKSLLVWRLMHNKVPTDDNLMDRGCQLVSMCYLCCKNSDSFIHLFFDCPFALKLWSWLSASLNMNMQFTDLDDIWKIFERTWSPQCKIVIKAALINIINTIWFRRNQARFKNKLIHWKSAIxMIIAKISLSGNITTKASKGDIREFIILKAFKVNINPPKAPIIKEVIWTPPLTHWVKGNTDGASIKNPGRASSGGIFRDSEGICIGCFTQCLGNLNAYHAELVVAMTAIEMAYQKHWKFLWLETDSQLVILAFKNSTLVPWNLRNRWNNFQLKLTNMNFVVSHIYREGNXCS
>RILN1_OA_pol#LINE/L1 62-1712 via tfasty with CIN4E_ZM_pol, 2 frameshifts and 4 stopcodons.  [Oryza australiensis]
MCLRRMSIAVCMDSSSLSHMSRHLRQYSAGQCRRVSKLILRTYRFASECFIIAGSTHFYSKMNPSSILIWNARGLNRKDRRNSVRDTDFILSSNADIVCLQKTKITSMDQCLFLSIIGSSYDKFVALSAIGTKGGILISRKSSTCQAIATRVDSFTVFVLFSKQEGRNWxFTGVYSPQEDEENRLFLQELRNIQGMCNGPWLVAGDFNLIYxAADKSNANLDRAMMGRLQRFLDDTELKELTLFGHKYTWSNKRRSPTLVRLDRAFCSLDWEDIFTDLVLQSAASGVSDHCPFILGLKIKTSGKSRFHFESFWTKVSGFLEAVQQNWEAPVHSNCAVGRLFIKLHRLSKGLQKWGQRKIGNIKLQLKMAKEIIHTLEIARDSHELSNSEVMLRKKHKHHCLGLASLERTIAHLRSRILYLxEGDANTAFFHQQSCFKKKKNFIAKLQVGDRVVTSQEEKQEAVLDFLNxLIGTAEEQNFSIDLEAIGKQPRDLSPLDNPFTEEEIWATIKNLPLDKAPGPDDFMGRVYKFCWHIIKEDVLAAFHDIHHRTC
>RILN3_OA_pol#LINE/L1 2-1167 via tfasty with 50901338_Osa, 5 frameshifts and 2 stopcodons.  [Oryza australiensis]
WNVRGLNNVTKRDQIRECVCSGGASLICLQESKLDAVTHSDVFQFSGPDFDEFVALLAQHTRGGIVLAWKGSLFKGSLIHQGNWSITVKLECIQGQRSWCLTTIYGPQADSDKLVFLEELREVRNLCQAEWLVIGDFNLIAETADKNNSRVNRRMMNAFRNTLNRLELRDLYLSGRRYTWSNDQRNPTLVKLDRALCRLSWEEMFPEARLAQGLSSSTSDHCPLLLTCGDSVQWRRRFxFETFWTKLEGFDDVVRExGQQGIQSQDPFILLHSKLARFSHALTIWGQKSISRYRLQIQIASEIILRFDLAQESRVLTDLERQLRALCRGRSLALASLERISVRQRAKVRNLKKGDAGLAYFYLKIRSRQRKLFILTLEHERRIETSHIP
>RILN6_OS_pol#LINE/L1 2-1360 via tfasty with MIUSE1_TM_pol, 2 frameshifts and 2 stopcodons. [Oryza sativa]
WNARGLNASAKWEAIRNKTEESACVVVCLQETKKENFDRCFIRNLAPRRFDAFDFVPSVGASGGILVLWNISILLGQVLDKQSFGISVNFKSAHSQDSWKLTNIYGPCEEPARSEFIAWFKSHDIQPLYNWIFLGDFNFYRSIRNKNRTGGNIKDTLVFNDAIGHLGLIELPLKGRACTWSNMQSNPLLEQLNWFFTSINWTIDYPNTSLIPLAKTTSDHVPYKISIGSSIPKANIFRCENFWTEQADFLEMVSECWASTPNIPDAAKNISKNFKVLRAILNRWSKGISNLTVMIKNYNSVIKHLDLLEDRRGLHNPKFNLRILVKKxLxIWHHYKNLYWQNRHKINKVKLGDECTKYFHRMATIAYHRNSIAQIKNEDGVWIQDHVGKTCIIWNAFRDRMGTSSNPTMLFDLSALILPVQNLSHLSDPITQQEIDVVIKRMPNDKAPGPDDF
>RILN7_OS_pol#LINE/L1 2-1353 via tfasty with 58532025_Osa, 6 frameshifts and 3 stopcodons. [Oryza sativa]
WNVRGLNSAEKRLVVREMVVSLGASIICFQESKLNAVTAELISSSCGSQFGGFAVLLADQTRGGILIAWKDGVFEGTVVLSGRWSVTAxIEMAAGVTGLGFSVYGPQQEDDKFLFLQELFEIHAICAGNWMITGDFNLIASAADKNNSRINKRLMNVFCNKLNELELRVMYLFGRRYTWSNERREPTLVKLDRVLVSIVWEENFPEANLQALKSSVLRSLPILLTCGIGFQRERGFRFESFWAKMEGFEEVVKECWQKEVSSSDPFSILYVKMTRLSKCFSKWGQRKVSLHRLQIQITKxVILRLDVAQERRTLIEAERILRAALKGRCLALASMERIRLRQRAKVKILSEGQASATFFQLKIMARRRKLIIPRLEHEGNMVTTQEDLQKLATDYFTKNFSEDQTACSHLNLEGIQLAKADLTSLDEEFTEDEVWKAIKELPLxKSPGPDDF
>RILN8_OS_pol#LINE/L1 1416-5008 via tfasty with MIUSE1_TM_pol, 3 frameshifts. [Oryza sativa]
MNSAMRNWNVLCWNVRGLNSDDKWLAIRNKIEESGCAVFCLQETKRSSFDHSYIKKFAPKRFDKFAFSPSVGASGGILVGWNSSVFGGSVLIERFAVKITFTSNHSGLVWTIVSVYGPCTGPERNNFLSWLHQLNIPDDDLWLILGDFNFYRSVTNRNRPGADMNDIFLFNAMISDLGLVELPLKGRAFTWSNMQHSPLLEQLDWFFTSTAWTLTFPHTLVKPLARSTSDHTPCVVQIGTDIPKADIFRFENFWVEHDGFFDLVQSIWQNHGYEGNAAKNISVKLKALRKGLKKWSKSLSKLQLLIKNCNAVIAFLDSIENLRDLTVLEWNFRILIRNKLLLYLKYKQIYWQKRCTIRWAKFGGENTKFFHAMATESYRRNAIPSLVDSSGLVCTRHEEKAHIAWSAFSSRMGCSQFEFMPFQLQELFHANQSLASLDQPFGISELDKIIQNLPIDRAPGPDGFNGMFVKKCWPIICQDYYRLAAEFYSGTLDLDPLNHSFIILVPKKSVPEGINDYRPISLMGISLKILTKVLADRLQKVILEIISQNQYGFIKGRTIQDCLAWNFEFLHQCHHSRREIVLLKLDFEKAFDTIEHEAILLVMEAMGFSATWLGWIRKIFSSASSSVLINGIPGKNFHCKRGVRQGDPLSPLLFVLGAELLQVIVNRAYAMGLLSKPFPSDFDPNFPIVQYADDTLLYLKASGKELFTLKALLQTFQLGTGLKVNFNKSCLIPINVDEGKAQNLAAVFGCQLGSLPFTYLGLPLGTTKPKVIDFAPLVDRIERRLTSNASFLSYGDRLTLVNSVFSSLPTYYMCTLMLPKTVIDNIDRARRHCLWRGSEVNSNKRSLAAWDKVCKPKRKGGLGVLNLTIQNHALLIKFLDKFYNKKDLPWVNLVWSAYYGNSVPHLTNLKGSFWWRDICKLMDVFRGIAKCNLKSGNTCSFWYDVWDDQPPLFHTMPRLCSFAQNQNASVSDFLSIEAEENFTLPLSAQAFQEFQELTSSLLDHELVNENDVWSYIWGNMKYSSQKFYALNFRVIKPPVHFLWLWKCKAVSKVKVFGWLLMMNRLNTKFMLDHKNCAPPDCDLSCVLCQSAAVEDLMHLFFLCHFAQNCWSLLGITWDTTLSLEAMFIRAKLDYQGSCFMEKFLYAAWHIGSKEMGSFLAKDPSFITWRQLLKGDLFLLLFRISARYHDVIISWINGL
>RNHAL1_gag#LINE/L1 1131-2186 Almost identical to L1_RN_gag [Rattus]
MARGKRRNPSNRNQDYMASSEPNSPTKANTEYPNTPEKQDLVSKSYLIMMLEDFKKDIKNSLREQVEAYREESQKSLKEFQENTIKQLKELKMEIEAIKKEHMETTLDIENQKKRQGAVDTSFTNRIQEMEERISGAEDSIEIIDSTVKDNVKRKKLLVQNIQEIQDSMRRSNLRIIGIEESEDSQLKGPVNIFNKIIEENFPNLKKEIPIGIQEAYRTPNRLDQKRNTSRHIIVKTPNAQNKERILKAVREKGQVTYKGRPIRITPDFSPETMKARRSWTDVIQTLREHKCQPRLLYPAKLSINIDGETKIFHDKTKFTQYLSTNPALQRIIKGKAQHKEASYTLEEARN
>SHALINE2_MT_pol#LINE/L1 3182-6801 via tfasty with OSLINE1_1, 3 frameshifts and 3 stopcodons.  [Medicago truncatula]
GLGSSSAIPDLKYLARHFNPDLLFLSETLVHRNKIEDLRYLLGFDACFYVDRTGRGGGLALFWHNSLNCQLFDFSNNHITVEIIDYVLGTWRLTEYYGYPNGGRRTAAWNFLRQLSNQFASPWCIFGDFNDILDASEKRGRNSRPPWLINGFRQAVLDSGLSDVQIEGYPFTWFKSLGTPRAVEERLDCALANNLWFNLFPNAYVETLVAPASDHYPILLNRTPMPRPHLNKRHFRYENAWHFEPGFKEMVTNSWQVYSSNRLIPKLFSCAEDMFIWSKYHCQKLKRDIEDCRKQLKNTRLNSSGEExVRMYELTKRMQRLLSQDDAYWRQRAKTHWYKDGDKNTKFFHASATARKKVNRIISLDDDAGNKITDEQGLHDVARNYFVNIFQKQGSDLSPVIDVINxSISAFDNEKLKAPFTKAEFRAAMFSMHPDKCPGPDGFNPGFYQHFWNLCSDDIFKECCGWSIMDNAMVAIEVIHFMKTKTRGEDRYVALKLDISKAYDRMDWDYLRAVMIKMGFNRSLDSFSxNALWIHWMSMCVESVDYSVLVNSEKVGPIIPGRGIRQGDPLSPYLFIICAEGLSSLIRDAETRGVITGTKICRGAPSVSHLFFFFKADESQAHVMKNILSLYEAASGQAISLPKSEIYCSRNVTDPLKHTITNICSRNVPDPLKHTITNILGVQAVLGTGKYLGLPSMIGRDRNSTFSYIKDRVWQKINSWSSKCLSKAGREVMIKSVLQAIPSYVMSIFQLPTTLINSIEKMMNSFWWGHGRTTQRGIHWMSWEKLSMPKIHGGMGFKDLTAFNLAMLGKQGWKFLTEPDSLVSRIFKARYFPSGTYLTANLGHNPSYVWRSILRARFIVCGGARWSIGSGASIPILNEPWLSNGECIDGDITGAHFVQNFTVNSLMNLYDKSWNEQVVRQVFSDDIADKILHTPLIAQVQEDRLIWKAERHGRYSVRSAYRLCVKELIDSSYLWRPGYWSGIWNLKVPPKVKNLVWRMCRGCLPTRVRLLDKGVQCPTNCVSCASNHEDLAHVFFDCPFAIQVWNRTGLWGAIQHAMSSTTSAADAIFYLLETLSIELNQRLASTIWSLWKHRNLKVWDDVTETSATVVERARNMFDDWQLANAPTVIVPSPQHQVQQPIDEGISAAILYPCGSSASAISSGWQPPLSGRYKCNIDAAFFSHLNRTSIGICVRDSEGTFVLAKTAS
>SHALINE4_MT_gag#LINE/L1  310-1179 (fragment) [Medicago truncatula]
MAYTCLWPCVSDTISSAVAQSVPSATTQTVSGTTKSFLAALAGQNVIDDRPLPTPCIKGDALSIKICQDEYHKGXEDCKNALRGRLTLNKGDKPYSARDLSTKIGKLWKTTAAWKMVPLGKGYYDFHFDSADDLRKIWAAGTVNLKPGLLRFSQWTKDFKYHSQKQTHASLWIRLVELPQEYWRERTLKEIASAVGTPIDIDGPTRNRTFGHYARILVDIDLSKRAYDEILVEREGFAFKVEVQYERRPLFCHHCYSIGHNVTTCRWLHPQPPKDKNDRGKQIGCRGSSP
>SHALINE5_MT_gag#LINE/L1 1565-3126 via tfasty with LINE1C_MT_gag, 1 frameshift [Medicago truncatula]
MLMSFRDKVLESQPFVIKEKVDLVANKLAQVEHIKGNNRLMPMLHVQDSVMEELSVPYKGCLAVKLLDKKLGYNMMKTKLEAVWKPNKGFDLMEVGNSFFMVKFDDEEDKNKVINGGPWMIFDHYLAIRQWTPTFNAATATIDKTMAWVRIPNLNLVYYDESLLWAVASMVGTPVKVDIHTLRVARGKFARLCVEIDLTKPVVGKVGINGEWYHVQYEGLHVICTQCGCYGHVLKDCSHNLKSTTVTPESMVAPATAGPEVETETVHNKNGKEINVASRISGVIIEEISTKAVNLSINGDPEFLHGDWIKVERKKRINKMNVRGPGGDVKAEKFQNLKNRIKELNAESSNILHENRNVGNNFQRNNSPNTSIKVGKNKQKRSRGDIGPSRIGPNNEKHNHIARSSGVYKGGYTATLIHEPQKSSCAEENGPTVKACAKLDSSHSNSDIDINSKGGRNGNMSIVTNGDDSSQQHASIAATPREEIFLSHVVNKKKEDHDNISSMDGEDQNMGQAHDIQMHMI
>SHALINE5_MT_pol#LINE/L1 3129-7346 via tfasty with ATLINE1_2_pol, 3 stopcodons [Medicago truncatula]
MWFSHARFLYPFIYSLMIIISWNCKGAQGLNFPKALNNFCRKNKVDVVALQETRCSGSVARKAIKKLGFKNHIVSEAQGFSGGIWLLWNRPDVEFEVIQNNFHFIHIKVKEKDVDPWLLTVVYASPRGNERDITWQQLRGIAANIQDLWLMMGDFNEIASLDEKKGGAQHDIRKCLNFSNWINECRLMEVTTTGTIFTWRGPKWNGRDRVFKKLGRVLCNVEWRLRYHEGFAKVLPRVQFDHHPIMVLMEGEPSNRGNRPFRFEAAWITHKDFHRFLREKWGRGSDLLHTISNLTPQLKDWNHETFGNIFRRKNELLARLNGIQNSQNYGYSHFLEELEKDLQEQLAVTLYQEECLWFQKSRSKWIADGDRNTKYYHAKTIIRRRKNKIMSLRDDSSDWVDEPDSLKNLVRSFYTNLFREDTPIRDNIVSWTTYPNVVEEQHERLSAIIQLNECxRALFDMSPHKAPGEDGYPAVFFQQRWDTVVDSLFKFANQVWVNPSFISFINNTLLVMIPKLDKPEFVSQFKPISLCNGIYKIISKVIVNMIKPLLDRIISPYQSSFIPGRSIHHNIIMAKEMVHAMSKMKGQKGFMSIKIDLEKAYDRLNWNFVKNFLEECKFPPQIIQIIHHCISSPSYKIMWNGEKIDIFYPSRGIRQGDPLSPYLFVICMDKLSHIIADQVEANYWLPMRAGRYGPKISHLLFADDLLLFAEASIEQSHCVLHCLDTFCQASGQKINRNKTHVYFSKNVDTQLRAEILQHTGFNQVNSLGRYLGANLATGRNSRGHFNHIVNKIQSKLSGWKHQCLSFAGRITLTKSVFNTIPYYHMQYAKIPKTICDEVDKIQHGFVWGDSDQGRKAHLISWDVCCLPKIDGGLGLRQARNMNEAFLMKILWNLINNPDKLWGKVLHSKYGRGKDLTANISVQPYDSPLWKALAGIWDDFKRHVVWKIGDGHSTNFWLDKWSPNNGSLLSISNQDYIDTTLTVRDVLTPSGDWDIDFLMNNLPDYTVSRVLALPAPTDKDGPDTIGWSGTNTHQFTVQSAYSLQHQNCPTVEGDWKILWKWHGPHCVQTFIWLAIHRRILTSLRRSRWGVGISPTCPCCGNDDETVLHVLRDCIHATQVWLHIVPSNVITNFFSFDCRDWFSNNLKRKMVGTSTCRWQTTFMTTCxYLWKWRNKTIFEADFQRPNNPNILIQTFVRDIEDYNLELFHRGPKLTDTIYIGWKRPQEGWIKLNGDGACKDMGHISGCGGIFRDADGKWIKGYTKKIEACDALHAEMWGLYLGIEMAWREHFDHLIVESDSKILIDMISDEFKFNGNVPILVHRIRKLLRMDxHVQINHTWREGNRSADWLANFSISVNHLNLIISETPPIELRKLMFDDISRACMPRNVRLISQFLFFWALPSIVPKKK
>SHALINE6_MT_gag#LINE/L1 92-1138  [Medicago truncatula]
MVILKKVVVGENPLSMPMNTTEIWAQVHQLPFGFMDAKVGALVGSHIGRMVRYDDENNYGLWRRFMRVRVEIALEEPLQQSLVIEREQGEDIKLVLKYEKLGKFCFVCGVIGHTENFCSDKFETSSASSEKKWGAYLRAENFSSGGGSKVASRWIVDGRNKNSGGRNDEGTSINGIKSNHLMVIDGISNHEIYGRIKVDIDLQSRALKFFKFMECQRSDGTGLVRWWTEIDPTEEIESGSKKKEVITKKKLFAPNLTKSDQINKAIAEGMTEKDEFLYENGGGAEALWKLIDLEAQQKKHKPTKFYGGGQPAGPTWGQRQGREGRSDNSGPTRGQPPDKARNTRTACLV
>SHALINE6_MT_pol#LINE/L1 1742-5863 (3 stopcodons)  [Medicago truncatula]
MSFVAWNCRGLGNLRVIPKIKFLVRYYKPDIIFLSETIIQVNKIEEFRYLLGYDSCFAPDRVGRGGGVALFWRNTINCSIVNYSSNHISAKIEESNGHWIFTGFYGYPEASRRRDSWNFLRRLASNINLPWCLMGDFNDILHADEKKGRATRPNWLIRGFRQAVQDANLVDVHMEGYPFTWFKSLGTPRAVEEKLDRALATNSWMHLFPNAKLENLVAPSSDHFPILLDRTPVVRPHRSKRSFKFENAWRIEDGLNEVVHNSWLRSAGDGVINKLATCAEDLMQWNxTHCNRIQKDIEDCRHQLSRSRGVNGIQDEIHFDNLRKKMNHLLVQEDMYWKQRAKTHWFRDGDLNTKYFHVAATSRKKVNKILSLDTDEGIRVTEDAGMRSIAKNYFEELFEGQESVRSPVVNLLDPVLDNEDNDQLIAPFCIEEFKEAMFSMQPDKCPGPDGFNPGFYQHFWSVCSDDIYNECCxWLNEGQFPPSLNSTNLALIPKGSNQKTMKDWRPIALCNVLYKLLSKVLANRLKKILHKCIADSQSAFVPGRSILDNALVAIEVVHHMKTKTRGKDKSVALKLDISKAYDRIDWLYLKDVMHKMGFSDKWIQWIMMCVETVDYSVIVNKEMVGPIIPGRGLRQGDPLSPYLFILCAEGLSALIRDAENREVLQGVRICRNAPRVSHLLFADDCFLFFQAEERQANEMKQILTRYEAASGQAISLPKSEIFYSRNVQDPLRQTITNILGVRAVLGTGKYLGLPSMVGRSKKATFGFIKDRVWQKISSWSSKCLSKAGRKVMIKSVLQAIPSYVMSVFRLPNSLLDEIEKMINAFWWGHGGANNKGMRxLSWKKLSVHKNHGGMGFKDLAAFNVAMLGKQGWKLQVESDSLVSRIFKARYYPNSSYLDSKLGHNPSFVWRSIFGAKVVVRQGARWKIGSGFNIPIINEPWIGEGSSIPPIGPDMLALQSYSVGHLMDHNAKVWNEHLIRQLFATETANNILNTPLHQQVLVDRLIWKAEKDGCYSVKSAYRMCIEEIINNDHLRKPGYWSGIWRLKVPPKVKNLVWRICRDCFPTRVKLRSRGVNCPSNCVMCEDPHEDSYHILFHCKAAVDVWNAANVWHLISPSLDLFDNASDIIFHLLKILSTTQIENIVTTIWSIWKARNLKLWQQVTDSPTTILVRATHLLEGWRSANRKQNPPNQSHIDTTLPRNHNIQVVDGVSNIRWRKPRSGRLKCNVDASFSEVNNKIGLGICIRDSTGSHVRSKIMFFSPLCYVDVGEALGLYHAIRWIHEFQLENVDFEVDSKRVADYFNKGRGDVTEFGSIMDSSIHFCRSLLTNSHVEFTRRQANEVAHNLAKAATSSSSFRIFDEIPTCITELIFNEMI
>SHALINE7_MT_gag#LINE/L1 (fragment) 152-786 via tfasty with LINE1F_MT_gag, 1 frameshift.  [Medicago truncatula]
MEACKNNLHARIIWPKGTAPLTVVALKEKLKPVWKNLAPWGVTSIGKGYYEFVFSSSEDARRVRSVGSWMLNPGLLKLFPWSKDFSPNLQTNTSAQVWLKIHGLAQEYWRKRIIFAIASSVGTPICVDAVTSKPAIERTFGHFARVLIDIDLSKELRYEVLVERKGYAFFVELEYENVPEFCAYCRAVGHHVNVCRAGNRNVHTRKIIKRAS
>SHALINE7_MT_pol#LINE/L1 1377-5080 via tfasty with OSLINE1-3_pol, 1 frameshift and 1 stopcodon. [Medicago truncatula]
MKCIFWNIRGLANSPSRLALKNLILQHKPDFIFISEPWILFEHFPRHWFNRLHFKLFALNNRNHLDSNLWCFCLNHLNPILFSTDDQQISFSIQEYNVIYCISAIYASNSYIKRRLLWQTLEINQTQYNIPWCFIGDFNTILGSHEHRGAYRPARAPMNDFLAWSDTNNLFHIPTRGVQFTWSNGRRGRRFTERRLDRAICNQEWLDLCSSLYVSTLTKLKSDHFPLLMEFETVTTPFASQFKFLKMWSLHPDCRDLIQQSWNTNVVGCPMFILNQKLKYLKHKLKIWNKNVFGDVNILVKEVxAKVNFIQAQIDINGASDALLDQQKNAQIALEYALEKEEAFWREKSKISWHSQGDRNTKYFHRLAKIKNTSKLITSILDGENMITEPDQISNHITNHFQNIFSTNFSVQDLQVDDLIDGVIPNLITDDMNQLLTMLPTHQEIHKAVWSLNKDSAPGPDGFGAIFYQTYWDIVKKDVINAVLEFFTKDWILPNFNSNTIVLIPKVHDALSVTQYRPIAIANFKFKIISKILADRLAPIMKNIISTQQRGFIQGRNIRDCICVASEAINQLHNKSFAGNLAFKVDISKAFDTLEWKFLLKVLSSFGFNDKFCSWINTILNSATLSIYVNGKLNGYFNCKRGVRQGDPLSPLLFCIAEDVLSRNISKLVDQGKLELIKGTRSVKVPSHSLYADDIMIFCKGKLSSINALMDLFNSYALASGQVINPSKSTVYYGSISNARLEQITNLIGFNKGSLPFSYLGVPIFKGKPKKSHLQPIADKIKSKLSAWKASLLSIAGRVTLVKAVIQSMMMHTISMYSWPNSLLKDVEAWIRNFIWSGDVSKRKLVTVSWKKVCKPFSEGGLGLRSLYTLNEATNLKMCWDLKNSSEDWAILLRSKVLRGRKVISHHIFSSIWSSVKSEINNINDNCSWIIGNGENINFWLDTWVEKSIASFLNFPDIVHSTLTTRVSDYIHNSLWHIPQSILDSYPILSQLVMQITLPRDPKDDKLVWKTSSTGDLSLKEAFLFKYGTGQNISWAKDIWSPDIPPSKSLMTWRLMHNKLPTDDNLALRGCNLPSMCSSCQAYEETSFHLFFECPFASKMWSWLASLLNMPLIFNSPMDIWTILENSWTPQCKVVIQACIINFLNIIWFRRNNIRFQDKTVDWRTAINLIISKVSLSGNLTTKTAAANMLEFTILKACKVNIKPPRASMIKEVIWAPPMHSWVKVNTDGASIKNP
>SHALINE8_MT_gag#LINE/L1 151-1689 [Medicago truncatula]
MSTICAFNLFLVNLPFECANLLLIWSLRKNPANHMSSSLPLLIVFSETYYPESKVIIDLHLGIYGAQSILLIVMIHELLAQIYRHDALCFKLSYKSVILVVAGVHYPLLSIHYSMRYNLTLLSYITFLSLNFIIQMENLNLNSDSSAATQRPNLTQAELLDLCLIGRVMVNKPIHISTLETRLGPIWEPKYQMTLIQMEGNKFMVQLYSKADLTRILDRSPWLIDNNMLILKKVAIGEDPLMVALDTTEIWVQIHQLPFGFMDEKVGALVGSHIGKMIRFDEENNYGPWRKFMRVRVEISMDTPLQQELVIEREKGDNIKLVFKFEKLGKFCFVCGVIGHSENFCSDKFESSSTDNEKRWGTHLRAENNAVGNGSKEANRWIVGGRSKVTGNRNGGGAANIDCHSKAITSQGVSNHRIFGRIKVGINSETRALTFFKYTECERSDGTGLVRWWTEIDPTKVIIDVDTSKEVRNTTALFVPNLTKSDKVNKVLAEGMTEKDEFLYANGGGAEAL
>SHALINE8_MT_pol#LINE/L1 2478-5893 via tfasty with ATLINE1_12_pol, 1 frameshift. [Medicago truncatula]
MSIIVWNCRGLGNLRVIPKIKFLVRYYKPDILFLCETMVDNNKIEEFRYLLGFDFSIAPTRNNRGGGIALFWRNTVNCSIINYSTNHISAKIEEVNQSKWVFTGFYGYPDIARRRDSWNFIRSLANQISLPWCIMGDFNDILHSDXXXGRATRPNWLIKGFRQAIQEVELIDIHMEGYPFTWFKSLGTTRAVEEKLDRALATNPWMQLFPNARLENLVAPSSDHFPILLDRTPVIRSHRVERSFKFENAWRIEDGVNDVVQGSWLGSTGHNVMEKLASCAEDLTHWSKTHCHKIQTDIEHCRKQLHRCRTTHGIQDETYFDNMRKKLDHLLVQEDMFWRQRAKKHWYRDGDLNTKFFHAAATSRKKVNKILSLENNEGVRTSDEGGMRVIAKEYFEELFESYESTCSPVTNMLNQVVDHEDNVQLTAPFCREEFRDAMFSMHPDKCPGPDGFNPGFYQHFWSICSDDIFNECCQWMNEGQFPSSLNSTNIALIPKGVEQKTMKDWRPIALCNVLYKLLSKVLANRLKKILHKCIADSQSAFVPDRSILDNALVAIELVHYMKTKTKGKEKSVALKLDISKAYDRIDWAYLRDVMSKLGFSAKWIQWIMMCVETVDYSVILNKEKVGPIIPGRGLRQGDPLSPYLFILCAEGLSALIRNAESKGDLQGVRICRTAPRVSHLLFADDCFLFFQANLNQANVMKQILLQYEEVSGQAISLPKSEIFYSRNMDDQLKQSITNILGVRAVLGTGNYLGLPSMVGRSKKATFSFIKDRVWQKISSWSSKCLSKAGREVMIKSVLQAIPSYVMSIFRLPHTLLDEIEKMMNAFWWGHGGSRNRGMNWLTWEKLSVHKNDGGMGFKDLAAFNVAMLGKQGWKLQTNPDSLVSKIFKARYYPNSSYLEAKLGHNPSFVWRSIHSAKVVVRQGARWKIGTGEHIPVWDHPWLSNVARILPSTHHQLEWPSITVSDLLIIHQKQWNMELINTFFDADTAKNIFNTPLLPQVTHDRLVWKFERNGNYSVKSAYKDILNHDMAIVQHRVPGNWNGIWRLKVPPKVKNFIWRVCRDCLPTRIRLQSKGVQCTDRCAMCDDFGEDSNHLFFMCSKSMLCWQRTGLWSPLMAVFDINVSFPTNVFAILQHLDQQQ
>SHALINE9_MT_pol#LINE/L1 1-2371 via tfasty with ATLINE1_2_pol, 5 frameshifts and 8 stopcodons. [Medicago truncatula]
DNVIIAxEIVHSMNKKKGKNGYILFKIDFEKAYDRVDWNFLRITLRDFGFPTSIITLIMKCITSFTLSLKWNNEKLESFNPQRGLRQGDPMSPYLFVFCMEKLSMLILEKVQSNEWHPIKIFNNGLAISHLCFFVDDCLLFTQAKSSQARIVKQVLESFCHASGLKVNLKKSKFMSSANISRKKVNKFSSIIHFTHYTQLAQYLGFPMLSARIKNVDFAYIMDRVNSILDGxKTKLFSRAGRVTLAQSMVYSLPTYSMQNLWIPEGVCNQIYASIRQFTSGRKHSHWVNWKMITQPKSRGRLEIRTDRASNISIMGKHVWDLLHNPDKLWVNFLSSKYLHGISILVATNYQGSSCVWKAITKTVEVLKFGFKTRIGREDVSLWYDKWLEDDYLCNLVTYVHISETNLRLKDIYHTTGWNFSHLITQIPLNIQLQIQSILIDxSSQDIKIWTHSPSGMYSVKSGYQWLTSNSLYFAGxTQQETxHWIWKLNLLENLKIFILLAMHGNLPTNAFSASRYLTLYSSCKRCGSSIESLFHTFWSFPSLIGIWDALLFNKDTNFNSQDFNWWLKHHSLDPNGNIFIITCWVLWKAQNHKVFNGNDxVNWVxLSHIYSLHSYVVVYLSNDATQKPIRQVKWIPHLDNIIKVNVDGSSLSNPGRSGFGGLIxKSNGDWLLGFYRFCGITSCLAAKLYVIFHGLRIAYDAGHKNIILESDFRMALDLIMSDVQSHHPHAPLISQIVQLQHRDCIVNFHHTLRQGNACADWLAKHDASSSYALKSWIFLPSSTASFPSE
>SHALINE10_MT_gag#LINE/L1 1-894  [Medicago truncatula]
MEGRKLKRSTDEEDEAIPVEADEMCNDDESFSRTLVGKLWTENPYNTRAFKQTMLQAWRSRNPVEIQDLNKNLFLFKFSSKKEADLVCKNGPWSFDRNLLILNRISGNEQPSELAMNTASFWVRVYDLPLKLRSEAMAKKLGNILGKFDEVDMKEVNRMGKFLRIKASMDLTKPLKRGSMLHFQGKDIWVFFKYESLPNFCFICGRIGHQMRDCEDMAGHDQEGYSEIEEKEQAFGPWLRASPLPKITYELNKESSSSACSKNLFPSHSNNKGQNSGTETEKEDEVEQQESQTHHNGA
>SHALINE10_MT_pol#LINE/L1 1275-5320 via tfasty with OSLINE1_1, 2 frameshifts and 3 stopcodons [Medicago truncatula]
MKILSWNCRGLGNPRAVRALLRLTRIENPQIVFLMETRLKANEVESVRNKFGFKYGLTVDCRGAGRERAGGLALLWMEHMNISIKSYSLNHIHGICDDEEGGEAWDLTGIYGHPEEQNKKKTWNLIESLGRQISGRWICYGDFNDIFDSEEKKGGNIRSLSQLSLGRQVVAECSLIDLGFDGYPFTWSNGREEGENIQCRLDRGFGNEAFINRFSPIKVIHLPRFGSDHAAILFCLEYINxRNRRRKRPFRFEESWTKEARCEALIRQSWNSTTSSCTEKIEAIKHLEGEFDDHNMGKLKKEISRLEKRMNNQSLWSGNDEDLCSLKRIEKEHEELLKLEETMWRQRSRAVWLKDGDKNTKFFHGKASQRRKVNDIKKIKDEDGVWWKGEENVEKVLINYFADLFSSSNPSDIDETCEVVKGKLSEEHKNWCETVYTQEEVKEAIKQMHPLKAPGPDGLPALFFQKYWHIVGRDVQDLALNILNEDKEPDEINKTFIVLIPKGKNPSSPKDFRPISLCNVVMKIVTKTIANRLKHILPDVIDEEQSAFVQGRLITDNALIAMECFHWLKKKKKGKKGMMALKLDMSKAYDRIEWTFVQQILKSMGFPEKMVELILRCISTVSYQILINGQPSNSFYPERGFRQGDPLSPYLFILCADVLSGLIHKEAxYKKIHGIQVARTAPKISHLFFADDSLLFARANSEEASKILNVLTTYQKASGQMVNLDKSEASFSRNVHKEEKNMICNKMGVKAVESHSRYLGLPVLFGRSKKVVFSFVIDRVWKKLKGWKEKFLSRAGKETLIKAVAQAIPNYIMSCYKIPEGCCNDIESMLAKFWWGSNKDQRKIHWMSWERLSKAKVKGGMXFRGFSDFNKALLGKHCWRLXTGEHSLLERVFKSRYYPSGNFLEAKVGYQPSYAWRSIMSARDVIEKGGRWKIGNGKSVRIWNDNWLPDMRTLEAKSAVFTLQDDACVAELIDEDTKQWNRELILSSFNRYVAKKIVSIPLSLRLPEDKMVWNWEKDGEYSVRSAYHLLCDEKSKNPTGTIKSQRDKLWKEIWNAPIPNKIKNFMWRLAKNILPTRSNLQKKGIILDTLCPLCHSEHESSHHLFMNCNMLKLSLFASHLGSHIPTDVDLHDWMLKWLTCQEPIGAQLFCTILWKFWYARNQAVFKGSPLDPSLLADDAMYFVHEFNEANPRRGRRTVQEVPHTQELPTDFSVFVDAGCFADGPTGWGLNLKNRRGDTCLSKCKXDDIDVDPLLAEALGVRWALQVAKDQGINSIAIYSDAANVVNCINRKSNFATIDMVIQDCRDLMSSLxNVCVIXVSRDQNFDAHNLASLAKIVGNRTWLRVVPN
>SHALINE11_MT_pol#LINE/L1 7-3434 via tfasty with OSLINE1-4_pol, 3 frameshifts and 3 stopcodons (rather large deletion as well)  [Medicago truncatula]
MIVSSFNVRGLGGGLKKNKIKELIRNHGVDFMAIQETKLENVSPELCYNLWGSDNCNWAFLPSEGNSGGILSLWNKSSSKLIFSFSGEGFVGVCLEWGPLATRCFLVNIYSKCDHCLxKAFMGxLGGVEGGLGDGVWSMMGDFNSVRARDERRGVQEVEPSYRREMRLFNDFFDKVELEDKNTLGRKFTWFHSNGVAMSRIDRVLVSEDWELVWGSPSLGVLPRDVSDHCPLLLKSGDSxLGPKPFRFNNYWILNRKLKKVVEENWRDVNSKFFHKSVKLRSNSNSIRALQVDGGWVQTPEEIRGAVVEYFGKQVATTHWERPKLDGVAFDMLSEDDNRGLIAPFTLEEIEKVVKDSDGNKSPGPDGFNFAFIKEFWHLIKHEVRIMFDQFHANEVLPRSFLSYFVTLIPKVNNPFTLKEFRPISLLGCLYKLLAKVLAGSLSKVMNSIISTSQSAFVKGRNLVDRVLVINEVVDFAKRANRECLILKVDFEKAYDSVEWSFLEYMLKRVGFCPKWVAWMKACVFGGNMSILVNGTPTATEEICIQRGLKQGDPLAPFLFLLVAEGFSGLMRNAVNSNSFEGFDFRNNGFVVSHLQYADDTLCIGEASVENLWTLKALLRGFEMVSGLKVNFVKSCLIGVNVGREFMEAACNFMNCREGSLPFKYLGLPVGANPRSLSTWEPLLDCLKKRLNSWGNKYVSLGGRVVLLNAVLNAIPIFYLSFLKMPVKVWKKVVRIQREFLWGGVNGGKKVCWVKWSTVCQPRAKGGLGVRDIRLVNFSLLAKWRWRLVQPDQALWKEVLICKYGNRIICLLDPGDNVWPSFASRWWLDLMSLEGAVGTNWFNREVVRKVGNGENTRFWLDRWVGNEPLCVTFPRLFSISSQKEAMVGEVWVDGVGGGDWNFMWRRNLFVWEEGLFLNLIEELEGWEKVELVDSWWWNWRRKGFLSVTSSYVMLENLLMPQESLENTKKVVFDLVWKSPAPSKVVAFSWKLLLDRIPTKDNLLKRRILAPEASVRCVFCDQVGETATHLFLHCELAFKVWSRVGGWLGINFITPQTLFQHFECWNGEIGRRKLRKGYWMIWHAVIWMIWKARNDRIFNNLVKDVGEIVDDIKVISWNWANSRLKSPPCLFYEWCWNPKECLLR
>SHALINE12_MT_gag#LINE/L1 77-1634 via tfasty with LINE1C_MT_gag, 1 frameshift (for the 260 AA before the frame shift LINE1C_MT_gag and SHALINE12_MT_gag are almost identical) [Medicago truncatula]
MSAMSSEFVFSAHGEQNLQHSKNPPDPIKPLTPKLSFRDKLLGSSQEIPIREKEDMIEKKLVRIELEDGNRLLPKVYLEPKVFQELCTPWKDALVVKLLGKNLGYNTMKDRLQKTWKLQGGFEIMDNDNGFYMVKFDQAADKEKVITGGPWLIFDHCLAVTHWSPEFASPNAKVDRTVVWVRFPGLNLVYYDESFLLAMASAIGRPIKVDTNTLKVERGKFARVCVEIDLTVPVVGKIWVNGHWYKVQYEGLHLICTNCGCYGHLGRNCTTTQPPLTNTSLPTSQPQPATEKTTNLTTTSKPPFKRNQFRISQNGNTVFNAIKNLSPNNGEVISNNEGNQELHGDWLLVTRRKKTTNNTTLNPSKTVTHKTNXYYALSYNPPKVKLGPSTPKFPPRPKSNDIPRANQNKSEPKRRRSEETTTDPINFPFHGPTQNFKPNMLSHVTKTHKEISFTNYSTSPTPQSDTQIDEPIPTHEKNPNKTTMQINNNQHPDTSNNNLLSTLENNIVTNNNTMHIKQD
>SHALINE12_MT_pol#LINE/L1 1483-5480 via tfasty with OSLINE1-2_pol, 2 frameshifts. [Medicago truncatula]
MSQFPHMKKIPTKLPCKSIXTNILTQVIITCFLPLKTILLPITIPCISXKIMVMIKWNPVLDIMTPMRRTWSLXLSTFTVSSVYLFVMEALLDITILSWNIRGAQNNNARRHLKELMRKYNPTFIAIYETHVPFARLSSFWTNNGYTPVHIIEANGHSGGIWLLNIQLLTSPQLSLTPNPHSITFTISRGNATTTCTCIYASPNPTMRPNLWNYLMNINHTIDGPWMLIGDFNETLLPSDQRGGIFHHNRAAIFSNFMNNCNLLDLTTTGGRFTWHRNNNGIRILSKKLDRGIANVDWRISFPEAFVEVLCRLHSDHNPLLLRFGGLPLARGPRPFRFEAAWIDHNDYANLVKNSWNSQNHNTTAALNKVKENSITFNHEVFGNIFKRKKHIENRLKGIQNYLERVDSLRHSLLEKELQQEYNHILFQEEMLWYQKSREKWVKFGDKNTSFFHAQTIIRRKRNRIHRLQLPNGIWSSDSDTLQEEAQKYFKNFFSGNQHHHDRTFNEGTHPTIDDQGKTSLTKPITKNEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDIFQMVHTAFQTGYFDPEISNTLIALIPKIDPPTTYKDFRPISLCNIIYKIITKVLVHRLRPILNNIIGPYQSSFLPGRGTSDNSIVLQEIIHFMRRSKRKKGYVAFKLDLEKAFDNVNWEFLNSCLHDFGFPDITIKLIMHCVTSSTFSILWNGNKLPPFKPTHGLRQGDPLSPYLFILCMEKLSIAINNAVNQGSWEPIQITNTGPQISHLLFADDVLLFTKAKSSQFHFINDLFDRFSRASGLKINISKSRAFYSSGTPHGKINNLTSISGIRSTTSLGKYLGFPMLKGRPKRSDFNFIIEKMQTRLASWKNRLLNRTGRLTLASSVLSSIPTYYMQINWLPQNICDSIDQTTSNFIWKGTNNKGIHLVNWKKVTSPKHIGGLGIRTARDANTCLLGKLVWDMVQSTNKLWVNLLSNKYTSGPNILHANATSNSSPTWSSIIRAKNVLKNGYFWRAGSGSSSFWFSNWSSHGPLGSLVPIIDIHDIHLTVKDVFTYNGQHTQALYTNLPQAIADFINNNHINFNETVEDTFIWNHNINGIYTAKSGYSWLLSLTEPTNAITPHHSWSWIWKLKIPEKFKFFIWLACHNAVPTLSLLHHRNMAPSATCSRCGEDDETFLHCVRDCKFSKIIWQKLGFSDQDFFSSNCTQDWIKNGATGTHSIIFLAGLWWIWRHRNQMCLSNETWSLTRLCINIHNSVDTIKKSFQHDGAISHSDRMVRWNNNNYHCHILNVDGSCLGSPIRAGFGGIIRNNAGFFLSGFSGYIPNIN
>SHALINE14_MT_pol#LINE/L1 4-4110 (1 stopcodon)  [Medicago truncatula]
MNILFWNVRGIGNSDTRTALKNLCLSHKPSLIFVAEPMVNFAQIPDWYWHSIGVSKYCINNxGPFLPNLWALWGNELIATVIFVSDQCIALEISCYQSSVYIAAIYASTYYVKRRQLWANLTHFQGCFQGPWFFMGDFNAVLGAHEKRGRRPPPPLSCEDFLNWTNANILNHLPTLGTFYTWTNGRFGNENVALRLDRAVCNEEWINFWRSSTCSALVRHQSDHHPLLLSLIYSTVKHASPFKFFKAWISHDDCRQLVSDTWSKDVRGQGMARLQSKLNNVKNAFKIWNRTIFGDVDRQVKLAMDEVNRIQHLIDSEGFSDNLYLQDLEAQLSLTKALNVQDELWKEKARHHQFINGDRNTAYFHRVSKIRATTKSISFLQDGDNVITDPTAIEMHILSYFQDIFSVDNNCAQNTLVDETIPSLVSEEDNNMLXRIPXYDEIKEAVFALNADGAPGPDGFGGHFYQTFWDIVGLDVVHSVHEFFLHGELPPNINSNMIVLIPKIPGAKAMGDYRPIALANFQFKIVTKILADRLASITSRIISVEQRGFVRDRNISECVIIASEAINSLDKRQYGGNIALKVDISKAFDTLDWNFLIMVLXHFGFSPIFINWILAILQSARLSILVNGKAVGFFSCSRGVRQGDPLSPLLFCLAEEVLSRAXSTSAARGRIVPMSYCRGISLPTHILYADDVLIFCTGLKSNIRWLLRIFHNYSEVSGQLINNAKSRFFTGAMTGSRTNMIANLLGFSVGSVPFQYLGCPIFQGKPKVIHFQMIADRIKMKLATWKGXILSIMGRVQLVKSIIHGMLVYSFHVYLWPRRLLRLLDTWIKNFIWSGDVLTRKVCTVSWKVLCRPWDEGGLDLKPTRLINXALILKLSWNLIAQDSQWSHLFKSRYFSNGQPSMRYFKSSVWSGVKLHIGTVMNNSLWIVGNGDNINFWTDNWLGEPLVDLLNIDADFHAHIKGMLSEVIVNGTWXIPAAIADFGDIKERLDVVILPRTHLPDVLVWKHASDGVFTSKLAHSFMRPPSHVWPWAASIWXACIPPSHSFIFWRLSHGKMPTDENLQTRGCIVVSVCSFCLKPAETSDHLFLHCNFAFRLWTWLGVKLNCVIDSSSVDSLLDCRPVSCSSQVSDIFVAAVXHTIHTIWWARNAVRFSXXTPTIHAAKIRIHSFIAMSGNVSKGKCLLSYFAFLDSFAVSPHCRSVKDIILVFWKPPSSPWVKVNTDGSVIGGNAACGGLFRDXLGTFCGAFSCNIGIQTVFEAEVFGFILAMEYAAHKGWRHIWLESDSTSALLIFSNPSLVPILLRNRWHNAQVLGVQVISSHIFREGNSCADKLASLGHEITDAVWLDTLPARVCLDFFRDRCGLPNYRFPFVFGGLCFSLFSLFCFXFC
>SHALINE15_MT_gag#LINE/L1 1196-2485  [Medicago truncatula]
RRKGGRKWLLGKEVSLFVVCVASEVVREYLPYHDDVVWANKCLLAKVKDGICFSGIQQSFLDAGFLDFNLISLGGDNVVLSPGLDGDVTELFSSAAAFLGNFLCDCRPWSKDSNVQYERGAWIRCYGVPLHAWNDNFFLELASTRGRLLKIDEITVNKGRLEYARFLIATPELQELNFFAHFVIDGRKYPIRFIEDLEFGLAVDACLSEFEDDNKSQCSVPEGIPHEEPVIDALVHHIHEDIVKYSKEGDSAAVPAICSSIQGMSENIVKKENAASSHSIHEAENTTLKNDVEVFNGTKKCAPIRRKVAPSLLGLKKLARLSELDRKELIRSLKKDKKSKRLFLKGKSSKTSSNFSSSKTNKVSLSAGSGNSGKSKDWENWVVLHGNAKEVEEDIIEVGKKIGIQCNNSFQALSRSGVHGGLEGCGRGV
>SHALINE15_MT_pol#LINE/L1 2542-6054 via tfasty with OSLINE1-3_pol, 2 frameshifts and 2 stopcodons.  [Medicago truncatula]
MKILSINIRGLGASEKRREVNRLVAERKPSMLCVQESKVEVVDEYLCRSIWGPDPMAFSFKPSVGASGGIITVWDPSVLDVWLTVNIANCLMIKGSFIKNHEMFCLVNVYAPCNNRGRQILWEAISNLFFVHGDVAWCVLGDFNVVRNSEERRGRVENIVSTDCDFFNQFIDSNSLIDLPLCGRNFTWYRGDGVSMSRLDRFLLSESWSTLFPNCIQVALPRGLSDHCPILLTIDEENWGPKPLRMLKCWADIPGYGEFVKESWQSFQVQGWSGFILKEKLKRLKERLRSWHSNHTLNINSKIQGAKQRMATLDAIGENSPLSDEEVNEIHMLSADIMAFSKLQASMHWQKSRINWLKEGDANSKFFHGIMSSRRRSNSIISLSTEDGIIEGVGNVRHLIFQHFQNHFKRRPQPWPDMSGLVFKSLSMADGADLIKPFLLEEIKAAVWDCDSFKCPGPDGINLGFFKDFWDILKIDLLNFFAEFYHHGKLTKGLNSSFIALIPKVESPQRVADFRPIALVSSVYKILSKVLANRLRKVVGSVVSASQCAFVKGRQILDGILIANELVDDAKHNDKELLMFKVDFEKAYDLVDWRYLDEVMDKMLFPRLWCSWIMECVTTATASVLVNGCPTDEFHFERGLRQGDPLSPFLFLLAAEGLNVMMSAVASNGLFTSYSVGTQILVSVSHLQFADDTLLVGIKSWANVRAMKAVLLLFEAISGLKVNFHKSMLFGVNITESWLHEAAVVMHCRHGRLPFIYLGLPIGGDPRKLIFWYPLVERIRRRLSRWKSKNLSLGGQLVLLKSVLSSIPVYFLSFFxAPSCIISTLDSIFLNFFWGGGEDSRKISWIKWDNICLKKENGGLGVKRLREFNLSLLGKWVWRVLEDKESLWNVVLRAKYGEFGGRVRFCEGVGSIWWRQLNQVRAGVGLVESTWLVDNIGRKVGDGSTTLFWEDSWLLNVPLSVAFSRLYELSENKGVMVGVLGGGDGYYLHGRRSWWRSVWSSCINFVFQVDIADRWVWRLHSSQVYTVHSAYSYLTAVDTNITADFDQFLWLKAVPLKVNIFVWRLFLNRLATKDNLRKRNILEATNVSCGALCGNEEDMDHLFFQCNYYGRLWLMISDWLGFVTVLNGNLYSHAHQFCALGGFSKNSMQAFTIIWISVLYTIxKDRNRRIF
>SHALINE16_MT_gag#LINE/L1 324-1169 (fragment) [Medicago truncatula]
MDPVNLNLAGLTLSEEGLTLNLESEPETAAVLEHCLIGRVLADREIQFAYFSERMSRAWKPGKRVTITKSVPDRFLFQFHHRVDAARVLEEEPWLYDNYHIVMDRISPGVVPSCVPLNHIDFWVQIHGLPFGFIQPKVGQGIGSFLGTLKTYDDRNTIHSSYMRLKVAIDVTIPLKREWRVRASNGSFVTINFKYEKLGVFYYRCGLLGHTDKVCPELFELEADDGIRHWGVGLKPVTQSLGTTATNRWLHDPIPAVAPKPSQVLFLLVVKLLLALVILHLS
>SHALINE16_MT_pol#LINE/L1 1611-5732  [Medicago truncatula]
MSLVAWNCRGVGSPSAIPDLKYLVRHFNPDLLFLSETLAHRNKIEELRFLLGYDSCFPVDRTGRGGGFALFWRNSLNCXLVDFSNNHITVEIVDSXLGTWRLTGYYGYPNGGRRTAAWNFLRQLSAQFTGPWCIFGDFNDILDASEKRGRTTRPPWLINGFRQAVLDAGLSDVPXEGYPFTWFKSLGTPRAVEERLDRALANNXWFNMFPNANVETLVAPASDHYPIFVNLAPLPRPHISKRHFRYENAWQLEPGFKDLVTNSWQEHSSHTLIPKLSSCAEDMCEWKKNHCNKLKKDIEDCRKQLHDTRLESSGEDQIRMVELRKRMQRLLSQDDAYWRQRAKTHWYKDGDRNTKFFHASATARKKVNRILSLDDDGGHKITNEHGLQEVARNYFVNIFQQNSDFSPVIDVINPSVSDNDNDLLTAPFSKAEFSDAIFSMHPDKCSGPDGYNPGFYQHFWNLCSDDIFKECCGWLDTGQFPPDLNITNIALIPKGSSQVSMKDWRPIALCNVLYKIISKVLANRLKKVLPKCISDNQSAFVPGRSILDNAMVAIEVLHFMKTKTRGEDRYVALKLDISKAYDRMDWNYLRAVLNKMGFHNRWIHWMCMCVESVDYSVLVNGEQVGPIIPGRGLRQGDPLSPYLFIICAEGLSSLIRDAETRGVLTGTKVCRQAPSVSHLLFADDCFLFFKAKEDQAHVMKNILSTYELASGQAISLPKSEIYCSRNVPDDLKTTITDILGVQVVLGTGKYLGLPSMIGRDRNATFAYIKDRVWQKINSWSGKCLSKAGREVMIKSVLQAIPSYVMSIFQLPTTLIDSIEKMMNSFWWGHGKTTQRGIHWMNWEKLSAPKIHGGMGFKDLSAFNLAMLGKQGWKFITEPDSLVSRIFKARYFPSGSYLTANVGHNPSYVWRSIMRARFIVRGGARWSIGSGATIPILNEPWLPNGEFISSDIPGAHFVHNFTVNSLMNLYDKSWNEQVIRQVFSADIADKILHTPLISQVDEDRIIWKAERHGRYSVRSAYRLCVSELIDSSYLWRPGYWSGIWNLKVPPKVKNLIWRMCRGCLPTRVRLLDKGVNCPTNCASCDSTHEDLLHVFFDCPFAVQVWNRTGLWSSVHHALSHTNSATDAIFYLLETLSAELXQRMSSVIWSIWKHRNLRVWEDVTETSAMVVERARNMVADWQLANAPDVLVSTSYPQHAMPTQMGASTSQHHNQVLWQPPTAGRYKCNIDAAFSSHLNRTGIGICIRDAEGTFVLAKTMTYPCIVSVDVGEALGLHSALQWLSEMQFDNVDFESDSKLTADAFLSTRNDXSEFGSIISSCRSLYRTFFSNSRVEFVRRQANXVAHALAREATSLASPAVYYDIPNCIETIIINEML
>SHALINE17_MT_pol#LINE/L1 18-4106 via tfasty with OSLINE1_1, 3 frameshifts and 2 stopcodons. [Medicago truncatula]
VISWNCRGLGSPSTIPNLKYLVRTYKPDVIFLSETMTTSNKIEELKYILGFDFCFTVYRIGRGGGLAFFWNNTFNCNITNFSQNHIDVEVNDYLRGKWRLTGFYGMPEGGRRRESWNFLRHLSNLSQLPWCIIGDFNDILNADEKKGKSDRQPWLIQGFRQAVLDAGLADIHMDGYAFTWFKSLGTARAVEEKLDRAMANNSWFDIFPNARLECLTTTSSDHYPLLLDCAPQPASSSGQRRFRFENAWLVEPEFKPFVSQSWQGYGDHPIMQKLNQCAEDLSKWSMNINQNTRQEIRKTQRKLEAIRSHVDASNVNYFNMLRNRLDKLLVKDDMFWKQRAKTFWYRDGDLNTKFFHAAATTRKKVNRIEHLEDENGIECRTEDGLKHIARDYFMHLFQKSPSSRASVINMVPTSITGDDNDMLTATFTLEEFKDAAFSMQADKCPGPDGFNPGFYQHFWNICGHEVYQAGCDWLASGAFPPHVNSTNITLIPKGDSQTSMKDWRPIALCNVVYKIVAKVLANRLKKVLDKCISINQSAFVPGRSILDNAMVAIEIVHYMKAKTKGKKGDVALKLDISKAYDRLDWDYLRDVMIKMGFSSRWIHWIMLCVETVDYSVLVNGAQVGPIVPGRGLRQGDPLSPYFFIICAEGLSSLISDAESRGDIRGTSICTNAPVISHLLFADDCFLFFRACENEAIGMKNILTTYEEASGQAINLQKSEIFCSRNTPDDLKNLIATTLGVRQVLGTGKYLGLPSMIGRSKNATFKFIKDRIWNRINSWSSRCLSQAGREVLIKSVLQSIPSYVMSIFLLPGTLIDEIEKMINSFWWGHNSTNSRGIHWLSWERLSVPKIFGGMGFKGLRAFNLAMIGKQAWKLITNPDSLITRLLKAKYFPHSDYFGATIGHNPSYVWRSIWSARDVIRHGFKWSIGTGENIPVWNQPWISNVARILPSTHYQVEWPSITVAHLLITHQKEWNVELIRSFFDSGTANNILKTPLLPSVTHVDKPIWKFEKNGIYSVRSAYRDILNHDMAIVQHSVPGNWNCIWNLKLPPKVKNFIWRVCRNCLPTRMRLQSKGVQCPNSCVICDDYEEDSKHLFFVCSKSMLCWQRTGFWSPLIQLTLISMSAFQPIxFLLYYNTxISSQKQIFTVTLWSIWKHRNNKVWNNITDTAQDICERAGTFLTSWRKLKIFGILAHQKPSTPNDLKWTKPSAGRFKCNVDASFSHARNRVGIGVCIRDAEGNFVLAKTEWITPLLDVDMGEALGLLSAMQWVKDLQLGNVDFETDSKIVVDSLYGSKSGVSDFSAIINDCRHLLVSDLVNSDVKFIRRQANEVAHSLAREALRHASFHIHINIPHCIYTIIINEML
>SHALINE18_MT_pol#LINE/L1 340-3553 via tfasty with OSLINE1_1, 5 frameshifts and 2 stopcodons [Medicago truncatula]
IRKEIEKCRKKLERVRTQVCSSNINYFNTLRQRLDKLLVKDDVFWKQRAKTHWYRDGDLNTKFFHAAATSRRTVNKITHLEDANDVKCTSVDGMKNIAKDYFLDLFQHQDGDRVRVINAVPTSISTEDNDMLTRPFSVDEFKEAAFSMKADKCPGPDGFNPGFFQNFWNTCGKEIFEAACYWLDNGAFPPYLNSTNITLIPKGDTQTSMKDWRPIALCNVLYKIVAKVLANRLKVVLDKCISENQSAFVPGRSILDNAMAAIEIVHYMQCKTKGKEGDVALKLDISKAYDRIDWDYLRSIMVKMGFSSKWSNWIMMCVETVDYSVLVNGEKVGPIIPGRGLRQGDPLSPYLFIICAEGLSSLIRKAEGSGNISGAKICKNAPIISHLLFADDCFLFFRAKSGQAQGMKNILAIYENASGQAINFQKSEIFCSRNVPDDAVKASIATNLWVQQVLGTGKYLGLPSMIGRSHTSTFKFIKDRVWKKINSWSSKCLSQAGREILIKSVLQSIPSYIMSIFAIPKSIIVEIEKMLNSFWWGHNKRNTKGIHWMSWERLSIQKKEGGMGFKNLRAFNEAMLGKPGWKLVSSPHNIVTRLFKAKYFPKCDFLDSKIGHNPSYVWRSIWGAKRVVREGYKWSIGSGTDISVWDQRWLVDGGVLQKPESVPEEFKELTVADLFIPQTQFWNVGLLRNLVSNEDTNRILNTPIFEHxSVHDKRVWKLETNGIYSVKSAYRISLSQHVDLSTHRCDGNWELIWNLKVPPKVKNFLWRACRNCLPTRVRLQDRGVNCTKTCALCENEDEDSMHLFFYCTKSRQCWQQLGLWSTVQQKAQLLISALRSLMFEILQELDSSQRVIWACVMWSIWKQRNNSIWRNEVMTTAAVRDRGLNLLTGWQNAQNSRNHSECTATTYxRPVWRKPDEGRFKCNVDAAFFKESNRVGIGICIRDDNGSLVLAKTDWLTPLLDVHMGEAIGLLYASRWVKELNLDNMDFELDSKRVVDSFHSTRNDVSDLGAIIKDCRTTFSSFFTNSKVEFIRRQANEVAHSLARAATFYASFHYFTVLPDCIQDILINEMR
>SHALINE20_MT_pol#LINE/L1 90-4233 via tfasty with OSLINE1-2_pol, 6 frameshifts and 1 stopcodon.  [Medicago truncatula]
MKCLFWNLRGLANSPTKLALKKLLILHRPDLCFIAEPWMHIDNFSKLWLDRLGMKVFCVNDRGNLTPNLWCFCSKTLTPTLINMDDQHITIQITLNAMCFTLSAIYASNSYMKGGIYGKLKLIKKYNAPWCFIGDFNTILGAHEHRGTNRPARAMKDFLDWSDTNNLIHLPTRGAQFTWANGRGGRRYIERRLDRAICNQEWLDICSLITCSTLIKIKSDHFPLLFDFKTVTTPFVSQFKFLKMWTLHDDCRNLIQDSWNXNVVGCPMFILNQKLKSLKQKLKIWNKTVFGNVHMLVKEAEQKLISIQDQIDINGVTDDLLDQQKNAQIALENALNKEETFWKEKSKVXWHSHGDRNTKYFHRLTKIKNTSKLITSIIDGDEMITDPDQISTHIINYFKNIFSTNYSVQDLQVDDLVDEAIPNLITDDMNNLLTMLPTHEEINHAVFDLNKDGAPGPDGFGASFYQTYWDIVKKDVINAVLEFFNKDWILPNFNANTIVLIPKIPDAxSVAQYRPIALANFKFKIISKILADRLAQIMTNIISTEQRGFIQGRNIKDCICLTSEAINLLHKKSFGGNLAFKVDISKAFDTLEWKFLLKVLSSFGFNDKFCNWINTILNSATLSIYVNGKLNGYFNCKRGVRQGDPLSPLLFCIAEDVLSRSISKLVDQGKIELIKGTRSVQVPSHSLYADDIMIFCKGKLSSIHALMDLFNTYAQASGQIINPSKSTVYSGSISDARINQITNLIGFNKGSLPFTYLGVPIFKGKPKRSHLQPIADKIKSKLSAWKASLLSIAGRVQLVKSVIQSMLIHTISIYSWPNSLFKDMEKWIRNFIWSGDISKRKLVTVAWKKICKPFDEGGLGIRSLYTLNEATNLKLCWDLMHSNEHWAILLRSRVLRDRKVINHHIFSSIWSSIKTEFNIIMDNSTWLIGNGKNINFWTDTWCGKPIASLLNFPDIVHSTLTTRVSDYINNSHWNIPQSILNSFPNLSQLVXQVTIPMDEKNDKLVWNTSSTGDLSLKEAYQFKYTTGQNINWAKNLWSPDIPPSKSLLVWRLMHNKLPTDDNLTHRGCNLPSMCSFCQAYEETTFHLFFECSFALKMWNWLASILNISLIFNSPMDIWNILERNWSPQCKVVIKACIINIFNTIWFRRNQIRFQDKMIHWRTAINIIISKVSLSGNITTKAAAANMLEFTILKAFNVNINPPRAPIIKEVIWTPPILTWIKXNTDGASTKNPSRASXGGIFRNSEGVCLGGFAQFLGNANALYAELFAAMRAIEIAASMEFSNVWLETDSQLVILAFKSKSIVPWSLRNRWNNCIQFTHRMRFYGSHIYREGNICADRLANFGLSLSSSELFWFDSIPDFIRREYNRNRLGLPNFRFVTF
>SHALINE21_MT_gag#LINE/L1 32-1084 [Medicago truncatula]
MFDWQAESAPSATPSATTVPAPPNPPVAASFAQALSASQPTSSNDNLPQPSIRGETLSIKITQEVYEKGMDVCKRNLRGRLVLNKGDKPYSTKDIELKLQKLWKTSGAWTMLSLGRGYYEFFFASEDDLRTVWAAGTVNLKPGVLRLFEWTKDFNMHTQRNTHAQVWIRLMELPQEYWMERTLREIASAVGTPLVIDNATTKRLFXHYARILVDMDFSRKIFHEIVVEREGFAFPVEVVYERMPDFCTHCQNIGHDVTACRWLYPRKEKEDNTAKEKVAQGKKQVPTKKTEWVPIKDNPSGIGSSXAFQQPISRPAATEEXIPTQHFCSTEPTCNPQQHLFGLLQLYQHVP
>SWIMMER1_gag#LINE/L1 268-1146 [Oryzias latipes]
MAEYNILLQELRAFRQENNEKLESIKEDIAKVNNRMEEAEGRIEKAEERIQTMEDVMVELMQVHVKLTDKLTDLESRERRENIRIYGVPETSERDSPSMSAFVETLLREGLKLEGAENINIERAHRSLGPPPPNGASPRSILVKFLSFKTKEQILRKAWQQKGFTWKGKQISLDNDYPPLILKKRREYAAIRRILKDKQIQFQTLFPARLKVKYADGVKIYNTSTEASEDMSERGFPVEVIKPPESVLERYKQLNTWNRVTRGTDRTAPGPPGPSYKEKLRAFRRTGADPAVE
>SWIMMER1_pol#LINE/L1 1589-5362 [Oryzias latipes]
MYDRNVKLLTLNINGLHNPVKRWKTLSKLKQDKAEIVFLQETHLPEAEHLKLNKMGFKHVFYSSHSSGRRRGGATLIAGAVNYQHVSEYKDKEGRYIMITGKINSILITLLNVYVPPGSDWSFYRHIFEIISTKSQGTLICGGDFNIVLNNSLDSSNGKGDYRKIGKKMRHLMEEMGIVDVWRENNPTKREYTHYSHPHNAYSRLDYIFMFKNDLLRVKNSDIGICAISDHNPVTVSLYLAGQKRTTVWRLNNNILNYPNIKDKLSYEIKEYLIHNDNGEVSPGTLWDALKAVLRGKIISISSYQKKASQQKLKCLEEKLLKLQQEHFQSVNTKNKTEIIKLKKEIDDINTLAVQKKLVLMKQKYYEVGSKSLKLLSYKLRKQQAERAIYKIKNPSSKKIETDQEKIQQCFHEYYKNLYSETNLNNSDQIDAFLKDLDLPTLTVEQNEKLLTAITEEEIQFAIRKLKSGKMAGADGFSPEWYKTMETHLIPTLLKTFNWVMEKKTTPLSWNKAIISIIPKEGKDRLDCANYRPVSVLNIDYKLFTSIISRRLETILPMLIHKDQTGFIKQRQTQDSIRKVLHIIHQVVQQKQETLVISLDAEKAFDSVRWTFLYKVLGKFGFCKSIIETISGLYNKPTARIKINGDFTETITLERGTRQGCNMSALLFALYIEPLGQWIRQRADIKGVKVSGKEQKLSLFADDLLLTISQPTKTLPIIMDSLKDFGTLSGYKINVNKTQVLTLNYSPPQNIKDEYKWEWQADSIKYLGIALHKDFTKMFEVNYGPLNTKLQSDLQRWNAIPFLDLHSRIDSIRMNILPRMLYLFQCLPFPIPQKQFVEWDKMLSRYIWRGKKPRIKYKTLQLKTDQGGRNLPCLQDYFCAAQLRPLICMCSPVYTAGWKDLELKTFEKIPLKALLADLKLQGELLLQDDPLLSMMIKTWNDTVKKCNLMEDSKILRWCTCDSEFTPNKYDGRFKLWIAKGLTDFNSFVHKGAFQTFDTLKKKHGLISDDFFRYLQVRHYFNQKIKISTDDPKFLKTFKTLIKAICPTKIISKLYNSILSHKGENTYYVKERWEREGRLTITEEDWEQICRKQWITTGSNIWREFCWKSIMRFFTTPSQKKYLGNSKCWRCGNNGANHFHIFWDCVIIKKYWSDIHEHLQNVFSIVFPLSFESLFLSKIDGLDNKNKKLLYILLAASKKAITRKWLKPEQPTTEDWIDVVQRIYIMERISHSLQIRLDVFYATWSIWTEYVKPVRSDFI
>TA11_gag#LINE/L1 228-1688 [Arabidopsis]
MEMSLEEKDEPFEMPDLPEFLSCERNKLSLIGRVLNPSCQPMKHLIRNIPRKWQKEGRVTGISLTSERFQFIFDSKHDLEDVLPKGVHTYNDWSIVVDRWYENPPDDYLRFMLVWVQIWNIPVNYYTEKAITKLGDLIGEVKEVVFNPVEPQLHEFVRVNVLFDVSRPLRRSKVINFKNGDTATVRFHYERIQKRCYECQRLTHEKDLCPILIKERQDKASARRQGISIPKAPPPSVLQESDPLFGVLKESQVGVDPNTGRPRIAPEVLEGMRQYLRVANDEERSIRVDQVIKSVRDAEKDPFTQKTVLQLEALPIVHHDMLREKGVVFDYDRGDSSSHNGGLNLNSSLRLEESTQSKDARDWLTEPVNSLASKDVGCFLALSQPFPVSSTVYSPGLFESDSTGTIRKKVKQRNRPPNHARKLKLKDPSSIFVDHSLKEGSTSGTKDKRKAVDMGPSAAKIFKLNPKLVVPNEGPSKA
>TA11_pol#LINE/L1  gi|2129709|pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis thaliana retrotransposon Ta11-1  [Arabidopsis]
MSLVSWNCQGLGWSQDLTIPRLMEMRLSHFPEVLFLMETKNCSNVVVDLQEWLGYERVFTVNPIGLSGGLALFWKKGVDIVIKYADKNLIDFQIQFGSHEFYVSCVYGNPAFSDKHLVWEKITRIGINRKEPWCMLGDFNPILHNGEKRGGPRRGDSSFLPFTDMLDSCDMLELPSIGNPFTWGGKTNEMWIQSRLDRCFGNKNWFRFFPISNQEFLDKRGSDHRPVLVRLTKTKEEYRGNFRFDKRLFNQPNVKETIVQAWNGSQRNENLLVLDKLKHCRSALSRWKKENNINSSTRITQARAALELEQSSGFPRADLVFSLKNDLCKANHDEEVFWSQKSRAKWMHSGDKNTSFFHASVKDNRGKQHIDQLCDVNGLFHKDEMNKGAIAEAYFSDLFKSTDPSSFVDLFEDYQPRVTESMNNTLIAAVSKNEIREAVFAIRSSSAPGVDGFTGFFFQKYWSIICLQVTKEIQNFFLLGYFPKSWNFTHLCLLPKKKKPDKMTDLRPISLCSVLYKIISKIMVRRLQPFLPDLVSPNQSAFVAERLIFDNILIAHEVVHGLRTHKSVSKGFIAIKSNMSKAFDRVEWNYVRALLDALGFHQKWVGWIMFMISSVSYSVLINDKAFGNIVPSRGLRQGDPLSPFLFVLCSEGLTHLMNRAERQGLLSGIRFSENGPAIHHLLFADDSLFMCKAVKEEVTVIKSIFKVYGDVTGQRINYDKSSITLGALVDEDCKVWIQAELGITNEGGASTYLGLPECFSGSKVQLLDYIKDRLKTRLSGWFARTLSMGGKETLLKAFALALLFYAMSCFKLTKTTCVNMTSAMSDFWWNALEHKRKTHWVSCEKMCLSKENGGLGFRDIESFNQALLAKQAWRLLQFPNSLFARFFKSRYYDEEDFLDAELKATPSYAWRSILHGRDLLIKGFRKKVGNGSSTSVWMDPWIYDNDPRLPLQKHFSVNLDLRVHDLINVEDRCRRRDRLEELFYPADIEIIVKRNPVVSMDDFWVWLHSKSGEYSVKSGYWLAFQTNKPELIREARVQPSTNGLKEKIWSTLTSPKIKLFLWRILSSALPVAYQIIRRGMPIDPRCQVCGEEGESINHVLFTCSLARQVWALSGVPTSQFGFQNSSIFANIQYLLELKGKGLIPEQIKKSWPWVLWRLWKNRDKLFFEGTIFSPLKSIEKIRDDVQEWFLAQALVASVDAGETVCSAPCPSSWEPPPLGWVKCNISGVWSGKKRVCGGAWVLRDDHGKVLLHSRRAFSNLSVKKDALFCCVKWALRVCLATDSLRFCLLLSLGLTVRFCQAESLALFCFSCFRTNSFFGEDWRLEGLGGKGRF
>TAR2_TA_pol#LINE/L1 77-2000 via tfasty with 31433139_Osa_pol, 4 frameshifts and 1 stopcodon.  [Triticum aestivum]
QNWSRAKFGDVGRELEKLRAELAELQSNGAAHELLKEKANRMDELLHREQMMWLERSCIMWLKEGDRNTQFFHQRAVWQAHGSYISKLKNEEGEWYTSPSDMERMASSYFKEVFTRDPTLDVDSVLDLLNIKVTNDMNNEMLVRGFTEKEISDALFQISPIKAPGPDGFPARFYLHNWDVMKAEVQHFFSPGVMPQGVNETRIVLIPKKQYPREHEIVSKCLVNRLRPLLDGIICECQSAFVPGRLISDNVLIAFECIQHIQQESNPERASCAYKLHLSKAYDRVDWVFLEQAMGRMGFENKWVSWIMQCVRTVDYSVKFNGRLLERFSPSRGLRQGDPLSPFFFLFVADSSSALILDAVGTRGLSPVAICRTAPRISHLLFANDTLLFFKASEAQANIVADVLHRYAGGTGQLINPEKCGILFGESCPVDVQELVKNILHVRQQEFEDRYLGLPVPEGRMCKGRFQTLQTRLAKILVDWGERFMSSPAKEVLIKAVANAIPTYVMSVFKLPLSVCDELTKMVRRYWWGVEKGKHKTHWIAWEKLILPKNQGGLGFRDMGLFNQALLSRQAWRLIERPDSLCTRLMKEKYCRRGNLIDTVFTGNSSAVxKGIEHGLELLKKGVIWRIGNGRSVRIWRGPWIR
>TREP20_pol#LINE/L1 1-4066 via tfasty with 31433057_Osa, 7 frameshifts and 2 stopcodons.  [Hordeum vulgare]
RNCRGLGLDPTVGEFRDLVWSYNPAVVFLSETKKKSRAMERIKWSLGFTNGIAVDCAGKSGGLALWWRDHVQVSCRPWSQYFIDAEICVNGKTFRFAGFYGEPKTELRExSWDALRYVRAQDSLPWLCACDFNEILTQEEQWGGNPRPFSQMENFRDCMSDCGLGHTGYTFTWDNKRTDKDNIQVKLDRATCNSEFMSMYPTSMVENLITEESDHMTIFIRVMETAPGTRMRITRTFQFEEMxTKHEGYDTMVDDAWKQVGQCVGTGDLCSKLNHLSRSMHAWGRSVFGSIRRQIDLLKDQLRDAKERALTTGCTQEVRDIESQLKKFFEREEVMYKQRSRWLKEGDQNTQYFQNRALHRKRKNTVRAFHGENGVRCTVDEGTQEMAAGFYEHLFNFEGTDHTDLILDLFQEVVSPAMNKKLTAVVTDLETETALFSMGPTKASGPDGLPAMVYQQHWLLVKEDVCKAVRDFFAGSATPESFNDTIIVMTPKVNSSESLSEFHHINLCNVLYKIATKVLANRLKLILPVLISEEQSAFVPGRLITDNVLVAYECVHAIRKRKRKKPLCAVKLDMMKAYDIVGWVFLEQTLERFGFEQAWISMIMRCVRSVRFCVKLNGFFSRSFLTSRGLRQGDPLSPYLFMFCVEGFSALLQRAQRDNHINGVSFGSTGPHITHLLFADDSVVFLEGSEGNLQALKDTLQAYQVASAQKVNLQKSSILDGKGCRDEDKGTLKQTIGIDSEALSERYSGLPTVVGRLKDGSFEYVRERSKGKVSGSKGQGLSKKAREVLIKYGLQSTPTFTMSCFQLSKKICGNMTSIPSKFWWGASQGERKVHWIAWDRMCLPKRDGGMGFRNYEAFNQALLAKQAWRLQFPSSLCARVLKARYFKECTIMNTTCPNGASYTFRSIIHGRELLREGVVWRVGDGSDINIHHENWIPRAGSLKPLGQVFVHGITHVSDLLSPDGTAWDHDKVETMFTPDDAYDIKQIIIGGPGSSDHLAWNFTKSGQFSVRSAYHLCMMLKRTKFGRTESSSSVHKHQSWLALWNTNAPGKAKIHMWCLIKNGLVVDAESHRRKIKPGIFCTVCGGEETVLHCFWACPHSAMFWKVLSSEKWVPVAIPPVSEGPHGELASWLLRWFAEVGDPERELMVHAVYGLWLARNEARDGKRIVDPRVVEENVYQHIIEWNAIHMKKPRSTTPTLAVRWSPPEQGWLKANSDGALAKLRDRGGGGVVLRDHDGAYRGGACYVFRDVSDPEVVEILACRKAVHLAVQTGATRVHVEVDSKGMAAMLNDQAKNLSAAGPIVEEIKLLGRTLQGFIVSRVRRSGNHGAHLLAREGVSTELCRV
>TREP52_gag#LINE/L1 109-2875 merged ORFs and matches to CIN4; several stopcodons and frameshifts [Hordeum vulgare]
PTSLTAVESLPVALLLRLPPAMASVGTRSGDSSPDGRIRWSGSTGESSDSRSYREVLSSPPAPHGPLSPAAPRPAPCLLGHGAAPLDRAGHPPXXXHSEVHRASGGPVLDADGFQQPRKRNRHPRVRRAATPPSQRRRRSPSPEEVAGLCFRCLEGGHRVCACTNPVRCCRCLISGHESNCCETRLPGDHPAQPQAVHRQVPNSPLRNLPPRLHRDAAXPRNAAPPQPPAPAPARITMARSIKMEEVEEVLAHGMVATITGTRPSVSPADVEASLHAMFDLQPGDFTVHKHAPEDFLIIFSSRLIMDRTAGEHLLNAACFSLLLRPWCKLAHATAGSFAYSVQLELRGILPQAWHLSTAEHIFGTGCWVERLHPDTRSRADLAVFRLTVRVRDLASIRREAILELVEHVPADRPDLPPAFRTLEYPISIRLVQSAALPRVVDDATNGNGTGDGEADGSMPDPAGHGRERGQQGRRGRKRRRPASAPDGRADGMAVDAAGWTCSTGRLRADGKAVDPDWPARLCMRHRPYHPVTDAWMHGPRLGPTCPVAKPKEENVGERKSAPGFRWRWPKLQPQRIPARPSRPGRPPHRWSSHPDSWQRPIGAHPPSSCCRTRKAPVVRVAXRTGGPPSRDEPTTSNVCASGDQDGPSSPHVAPEADLQSGQSDTLPSSAPVADLSPTALHADPATTTQEAVPTSTPAALSDLHGHLTSPSWDASGETPCTSPSTAPLGKDDLGCPSPAAQEPRSILRRPTPASPSQSMPHSTPASHATLVRSAGRLATPPSTLLRARQPASVSSLTLGDFLTAATKQTCSGLPNSGCKCRRQPLNFSLRRGRSAAAVKAKPGMPPTAERRAQVQILRIHGIISTDQVISAEAMKAYDGVFAAPLSHAVLKAIAALVGRALPADTSTMPVTTVISGNPIEA
>TREP52_pol#LINE/L1 2913-6198  Using ORFs and estwise with CINR4 ORF2 pep TREP53 close. [Hordeum vulgare]
MDHGLKIINWNVRGLNTRARRTAVRSLVVTSSASITCFQETKMEFVYSSAVLETLGSEFDEYVYLPANGTRGGILLAWKSLDVMITDPMFITTNNISARVRTTGSTSLPWWLSIVYGPQDNNAKIAFLQEIRDVRDVRDACPGPWLIVGDFNMIYRDEDKNNDNVNRSMMGRFRRILNDLALKEIYLSGRRFTWSNEQNPPTLVHLDWVICSTDWEERHDECHLRCLASVVSDHSLLLLDFSPLPATRRRFHFEEYWTHLAGFSEIVPASWHSVDDADPFQWFMRRMQATARKLTSWSARSVGNVRDQLAISCELLLCFDAAQEXRALSTHEDWLRRQLKLSYLGLASLERTIARKHARIASLRDGDANTAFYHRQCXYRKQKNRIHSISVDDAAITDPAGMAVTTFEHFDNRIGTDXSVTELLTCCNSSSPXNLEDLDAPFSEDEIWRAINSMPSRKVPGRDGFTVEFLRSCWHIINHDLRSVFDQIYALHGRGFSCLNQALITFLPKRAEATGLGDYRPISLIHIVAKVLAKLLSIRLAPRLNNLVSNVQNAFIPGRSLHDNFILVRQSARVLHQLGAPRVLLKLDLARAFDSVSWPFLFEVLRCHGFGSRFLGWIALLLSSASTKVLLNGNPGPAIWHRRGLHQGDPVSPQLLVLAVDTLGRLFHRAVELRVMQQLHPRRAIPAISLYADDVILLCHPSPDDIAAVKEILQLFGRASGLHVNFQKSAAALIRCDTEDAAHIVAHLGCPIVDFPLTYLGIPLKLRRPTAGQLQPVVDKVAGKLPSWKAWLMNKAVRLAFAKAVLSAIPIHQLLVLALPKKTIKLLXKIERGFLWAGRAEAHGSNCHFNXRRVCRPIQFGGLGVHDLERTGLALRMRWQWLSRVDVSRAWSGLDLHFAPEERALFFASTTMAIGSGQRALFWEDRWINGLAIREIAPLLFDLIPKQRRKSRTVADGLHENQWAADIHGIIGIPEIGEYLRLWHAMAKTVLTDAPDNIRWKWTTNGEYSAKSTYLATFHGSARCQAWKLTWKCLVSVALLIPWMISKHRNGCVFEGATPSATSLAATIKEEAGLWARAGALGLQAILPQTWDVH
>ZEPP_pol#LINE/L1 2618-7422 via tfasty with L1-1_CR_pol, 1 frameshift and 3 stopcodons. [Chlorella vulgaris]
MTRSRSPSLRLLSLNVNGLRDRDKRRCLFNLLERDRWDIILLQETHHSSTEEGTAWAQEGPAGVRCNWSGPAFWCHFTSQSRGVAVLLRPTASTAAITVRHCSTTGRTLLVDFTYCGQPYTVASVYAPAAAADRQQYYTQELLPSLPAARCLLVGGDFNCIAGQQDMAAGQPGQRTHGYWTGLRLVETEHQLYDVWRDLNPSSRAFTHVATTGQSAARLDRWLVSETLRARVSREPRAIGQVLGYPGDHLGVSLSLTAPASTLYGSAAWRLPLHLLDDQPFCDRVTAAIPEYLAAHPLGEGVTQGSRWVELKWQVKDMAMQRSWALAAERRASQRALESDSRAALAAFTRRPAPDTLLAWQNAHQLLQGLNVEAAKGAALQAGIVWQFYGEQSTFWFHHLARGRQGRTELMALRTGPAPDSPRVVLDHPAGRDRGGAVLREYYSGDEAAGLFAAQPVSLAAQDELLQAVDKRLSPQAAAAAEGERGDGSVSVAELETALRSLPRGKAPGLDGLPYEFYLRFWPVVGLELAGMLQEAFGGGRRCPPLTQGRITLLYKGKGADRESLASYRPITLLNTDYKLAARAIASRIGPLLNQVVDATQTGFLPKRWAGDNVLAHLEEISYLEATHQPGVQVFLDFEKAFDRLDRAWIERCMAAVGFGPGVQRWVHILHSGTTSRVAFNGWHTDAFPVAAGVFQGSPLSPLLFVLARAPMAAHARMLAGQLAFQPIRLPSGEPAPVMHQHADDTSVHARTPGMLRSCWGPSVGLHCAATGARLQRSKSQALGLAASAISPGPIQSRGVTFAASSDGVKHLGIPLSTQPAAAATALYTAIIEKVEARIARWSGFRLSLLGRAYVAKQVLASMVTYHATFIPVPQDLLQRLCRAIHTFVAANRPVTPGAAAALFPSKDVCFRAAAHGGIALVDIKAQILALQAKVVGRLLEPEQLAWKANFDHWLYRSTAWLAAQEPGTCQRGGSTSGSWEDSCSSPPSQRSMWRPRSAYGSTCMPTSSCGPITCGSRKRSATTQSWVSHCSSTGSSRMQSAALCLGGLGQAWPGQDQPPARCRARPGASGSDGARARAHPSGCLASSLESANPGAATGRYVVRISDPSDRRVCLAQPKVAPTSQPHSKQHRSLLCQWTKALQPCTHSFLRPRSLHWFSTGTSPGAWHPRSGTRQQRQHAEQLHPEQHLQVEQQTGEQQPGEQLEWEQQLPEPLPPPPPTLILPLPLGIPGTGPSGLGARHAAGTxVCGEGGHRAATGASQDQQGGGQPGGPAATSHLGxYHRxSAHAFGRSRRDGRPGLQLLVPASQVLGKRPRGQPDPSSWAIWMAAPHTVPVPLRDRGGPARAPAAPSPVPQGADVTVDPAAAVTAEPISTLGSCVAKWCNASHLDRRQRVTAWRLLHGQLFVGGFARHVHRADPAGHVCPHPSCAGQLATLTHVFIICPLAAGVWDWFAATWAAVTGDDAPPRSADLLLADDTRIWGPPRQLRQLWDLRLATICQLWAAYQRGRHRPDAAAITPGAVAARILSSCKKALLADWRLATVNVRQTAGVLSDWLRGRDPMITREQFAARWCHRAVLCALEELPGAQPVIHWSAQHPVPLPA
>Zepp_gag#LINE/L1   gi|7484427|pir||T00077 gag-like protein - Chlorella vulgaris retrotransposon Zepp [Chlorella vulgaris]
MQTVKSWQLEPQRALDAHALSTPRPRLLRPRPDRWGDSEPLLLAALGQLELQEEVPYGSPERMQLELKVTRGVIAHFAPHVGGVKQRGSPGAADSCVELWFDTVPAAAAARHAAAEDQLVRLRAVPGSGDVAVPVQLTAGRFHCQHTCIIIHGLPYEYCRKGLTQTLLDCAGCPRDTYVVRGEFLGDLPGPLAVGTHGVGNGNACLAYIQTPDEDRHLGRLPKRFFIDGDTRINITRPGQLRQPSQPSSFQSQRLAPEPSRRSGPRPIRQRQRRCAGPHAHAAAAQRTQPAPSAQLQQLEARVQASRAPGGDRSGLGASGSISVARLGPRFRPAGDTQPLTPMDCTPPRSAQVFPAARQALTDMEEDTPPPPPPPVPMEWETQAYSVPQRELRRRISRVRIKGAATPMDWDLPHTEDPPQTAHRRPPHLDLSGVPVERIEECLEWLAGHTHFSPADSAAAIRRLHSDAPLALVSGGDAPADRELRHQLLCDALRRIHGADSLPDDSYGLPALTPEDLAQPAEVPAAPIARQQGRPTVPPGFESRAAAARAAQRAAQVALAGLPAPWRSARTRHQPTEWWLQQQGQQQERQRVEHRISRSIRSGGPPARRPSQP
>Ag-L1-5_gag#LINE/L1-Tx1 121-1086 [Anopheles gambiae]
MSATGQSSIKLDFSHVPNKPTTNEVIDFITGKLGISMIQVNRIHLRTSSVSCHVDIKEQSIALDIVEKNDGKHTIQCKGVEYPIPITMDDGSTIVKIHDASAQVTNTHIKNHMQRYGDVICVTEGVWSDAFACAGIPNGYRYVRMVIKKQIPSYIHINGETTLATHRGQQHTCRKCDHPVHHGMTCLSNRKLNSQKTNLMDRLKSYADVTTSGIQQKQNTLNTTTTTNTIPVEQPPQPQPGTSGLKFIPIKQTDAMTNDNSTVTETAVNLETNKGYRSRSPSVKRQAEKKLTDFITVESKRWRTRYTKSAEDKITKGRRQSR
>Ag-L1-5_pol#LINE/L1-Tx1 1159-4377 [Anopheles gambiae]
MANTTTHSNITEFKKSYRIGSINICNISNTTKTDALIATVKKLDLDIICMQEVNDSSLEIIQGYELITNIDERQRGTAIALKQDISFTHVEKSLDGRIISLCFGRTKLINIYAPSGSQNRIQRERFFQQSLAYHLRHPVENIIIVGDFNCIIDKKDALGTSNYSPALRNAIDNLNLVDTWNLLKNDPEFTYITSNSASRIDRIYISRNLKENLRSVDIHSVSFSDHRAYVIRLALPNNNQQIITRQKLWSYRKYITTQEIQNEFKENWIRWTRQKKHYGNWLTWWIKYAKPKIKSFFLWKTKMHYKEYNQTHDRLQSRLNESYSKLVNNPDEKITINRLKAEMLTLQRKLTQNFIKENNNYIAGEPMSTFHLFKRRKNRNFIKKLRLNNRTLENEKEILDAIQEQFKLLFSGNDNCLNSTPIIPRKIPEACVLNNDLTKEIETVEIFHTIRTATKNRSPGLDGLPYEFYETFFDIIHKELNLIINEALDNDIPPEFVEGIIVLIPKDNNTFEIENWRPITLLNADYKIFSRILKFRMKNILDTHNILTSSQKCGNGKNNIFQALLSIKDRIMNLKEKKIAGKLISFDMEKAFDRVDHTYLYKTLTAIGFKENFITLIKKIYSVSTSRLYINGSLQEKLHIKRSVRQGDPMAMHLFTLYIHPLLCKLENICNSQNDLVNCYADDISIITTDLNKIFNIKKAFEEYETESGAKLNTNKSLAMDIGVVNNQNRINTEWIENREKIKILGILFTNSFRLTMKLNWEATTHKFAQLVRQHRMRELNIQQRVILANTFLTSKLWYIGSVMTISKYHLGRLTFYLGIFIWSNGGPRVKMQQLALNKAKGGLNLLIPELKLKTLLINRHLIEKQHMPFTKSFLNQIENPPNIKDLPSFYPCLVPIRTELAYLNDRYKNNPSAKEIYKKVTDSLPLPHIQSKTPSLHWNKIWRNINNNKMNSKQRSYYYLLVNEKIMTEEIKFKFGMKTNPNCEKCGNIEDLEHKFKDCKNIKNIWILFTQIVKDELHIKPNFHELIKPDMNNIKKEKRAKIMSLFINYLIFIYKENFTNSIGKNQLKNIIC
>IseAg1_gag#LINE/L1-Tx1 gi|34392588|dbj|BAC82627.1| gag-like protein [Anopheles genus]
MKLLKPILSYVTLCGEVTGVSYRGQAQTCRNCAAPVHHGLNCVQNRQNRFANVVQVKATYANTVSAKTVAPTPQAASHTAAGNSGQKKKKKSRSRFLSAATPAPTHANVEDQHPRDASKIAARLIIPIVPVTVRPSSPKPNSRKGKISNANDKHVAPALSIAPTTDAVVSAHDRRFDDASSPAVPAAPVATAALAATAFAATNAASVATAAPAAITAPAANAASTAAAPAAATAHAATASPVATAALAAGAPATVSTPMDKDDPAAAAAPATAEVPGAVVANPAATSAPLAFKVPLDVLPAPFPGPSTDEPRTVTRKRTTESDVESDASSSSMNSFTMVAKRKPGRPSKKATTTNNL
>IseAg1_pol#LINE/L1-Tx1 1593-4823 gi|34392589|dbj|BAC82628.1| pol-like protein [Anopheles genus]
MDTVTNNIRTIVNGSCNIASININTISSATKLEALKTFIRTMDLDVIFLQEVYHTDLALPGYNVLSNVDASRRGTAIALRDHLKFSHVERSLDSRLICVRLENIATLCNVYAPSGSQRGAEREEFFNRTVAFYLRNACPHVILAGDFNCVLKSKDVTGGGNFSLALRNAVNSMGMSDSWEALRGNSVEFSYITSGSGSRIDRCYVSSSLETQLRTTDMHVLSFSDHKALTVRLCLPTPPNRLTNNGYWQLRPHVLTERNLEEFRCKWNNWTKQRRNYGTWISWWVEFAKPKIKSFFRWKTNERFRSFHLHHELLYRGLKSSYERYLSDPNELTNINRIKGKMLLLQRRFSEDFKRINETRVCGENISTFQLEERRRRRTVIEKLNIEDGTSLTDKDAINVHIRSFFSELYTTDNTDNTQTDDTFTCTRVIPEDCEINNGCMEEITSGEILYAIKNSQSRKSPGPDGIPKEFYLRAFDVIERELGLVLNEALRGEIPRSFVDGVIVLVRKKGGGDAMSSIRPISLLNTDYKLLSKVIKPRLDCIIGKWGIISTAQKCCNKPCNIFQAVLSVKERVVDLKMKRKCGKLVSFDLSQAFDRVDRGFLFNNMVSMGFNPGLVGLLRRFGDQSSSRILVNGSLSPPISIRRSVRQGDPLSMHLFILYLHPLITRLEGICCDQDDLVNAYADDISVVTTSSQKIELVREAFEAFGRVSGARLNVDKTIALDVGYTTSNAIQVPWLRTVERLRLLGILFTNNVREAMSLNWDLLIHHFRQLVWLHRVRDLNVVQKVVPLNTFLLPKLWFVASVCGARAMDIAKVTCTVNTFLWDGSGGFRVPLQQLALPRNRGGLNLHLPAIMAKALLTNRYVTEQDCLRVGGQHISCAGNPPNIAAVSSTYPCLRIVIQQLGYQPPSATITTRWIRQTMTEVLLEPKVSLENPSVNWRLLWRNIHRSCLSSLQRSTLFLLVNGKISHGELLHRMNRVPSPSCSFCSAIDTLEHKFAGCRRVADAWQILHQRISVVISGCPSSSTLLFGLLRLPVLNGINAGKRSHILSLFANYVIHIIGNNDAVIDIEVLRCSL
>KenoDr1_gag#LINE/L1-Tx1 gi|34392577|dbj|BAC82620.1| gag-like protein [Danio rerio]
MSAAXAGVRRHHRRRFLLKAPNGKLLEMSRMDFSRKVRQNPLNFRLEDLNCIVTLPLGKGFDVSFRAASLLNDFWQRFDAVKIQFSMFTVEKLSDNTLKTVIVRMFNHTVPGDDICVWLGRYCTVRPQPVKVLDEDGIWNCSWRIPIKQWEDAGGYQGLRHLPSMIVLGENRGYIHYQGMPKLCRKCGKNGHLAEACQELICGKCREVGHSFEQCTNGRRCNLCGEENHLFRDCPKSFANKLKNNKMAAPQASMVEQREEAVPVVLAGHSLPATGTGQEEENGAAIGAESPILFEQREEAPPQQSVTQNVTANEEEETASSLLTVSEASVDASQSETQCSLPYAQMQKRAARSPLEMEEKRLRASERLDSSKSEDLDRSWPLGSPNGVSFLHVKLRSSSPKELQEVFSVASEVVSISSPDPTPVGIGKEQMQQDIT
>KenoDr1_pol#LINE/L1-Tx1 gi|34392578|dbj|BAC82621.1| pol-like protein [Danio rerio]
MFISLFHLLMALTISTINVRSVRSPIRAQSVLSFLKLLKSDVFLLQECALPFISNYRKWEDVWTPGPSLWSGSNQNKNDGVAILIKNPNILVKGTTVVRDGRAFLVTLTFLGRDFNVLNIYGHTDKNERYELLEDLQPHMLGKPPLVVAGDFNCILTQKDRKKADFKLDKTSTLLNNLVKDFKLVDCFRQVHPREEGFTWFSSDSTSASRIDYIFTRDFPPVDATLTPTFFSDHTILSCTLSLPPGVTIGEGWWKLNCSLLEEEEVVKGYREQFSQWQTLQDFYDTRAQWWEMVKGRTKTYFKKIGKQKKNKRKKRMLGLQKRLQRYFNLLNMGFDFNNEIKEVKKEMLVLAEENSRGVILRAKEKKIEENEKCTRYFFKKIITKGGGISKIKNDEGTILNTTEGGLKEVEKFYQNLYGEKIVHEDALNEVLNFLDKKVQKEKHSVLTQDFKKEDLDKALKSFKKGKSPGMDGLPLEFYQCFWDILAGVLLTVFNEFENFNKLPADFRLGIVSLLFKKDDKTILKNWRPITLLNTDYKFFTKILATRMSTVLEDVIHPDQACAVPGRKITDSLLLIRDAICYARDRNIRLAVVNLDFEKAFDRVSHQYLLQVLEKMGFPGRFLAWVGLLYNDLVSKIIVNGHLTKAVNICSGVRQGCPLSPLLYVVCIEPLAQLLRRDKWITGFKIPGGLIASCVLYMDDVTLLTTDLTSARRAMDLTDFYGRASGARLNRKKSEAQLFGPWGNVVTEGLELTFKENDFKILGVKFDKEGGGGQNWNDILTKVNQKLGFWGLQKLTMEGKILIFKSVILPLILLVSSVFSPPRRFIRKLERAVFYFLWGSKWERLRRTELKKKPEHGGKGLPDPHLFLGSRFTALHFSYALTPSRENKTAAMTRFWMGSYLRTLKVLAVDLKYPVSFNLPREYDFIKKFLKKYVLETNDVTILTNHKALISLVQDRETVSRVPGLTLCEAQQVWRNAAHPALQNGHKDLLWMVAHEILPVRAVMHSRGMARNPVCPRAGCGCPETVRHLLWECGAARDLWARTGPLYHQYLPAGRAQMDYHLIIHGVGQGVKDMTQQDFTSLWLTLTAIKDAIWVTRNLLVGKQVTVPLQGTKGLITTTLQGYRTLTRGQGARGHTEEVPAATVPGRP
>KenoFr1_gag#LINE/L1-Tx1 125-1384 RepBase name is L1-1_FR.  gi|39652284|dbj|BAD04855.1| gag-like protein [Takifugu rubripes]
MSANYAGLRRHRSVRFYFKDEQVKISRLDFSRKFVQNLLNFQPDDINCILTLPANKGYDVSFCSAALLREFWTRFENVKSQFSAFAVEKLTDNAHKTVIVRMFNETVNAEDICIWLARFCTVKGQATKVRDEDGIWNCAWRVPIQQWEDPQGFQGLRHLPQMIVLGNNRGYIHYQGQPKLCRKCGEQGHLAEACPVIVCGKCRAVGHSFEECTTGRKCNLCGATDHLFRDCPLSFANKLKARKKQEEKGPTENEVRTVLEGNSNLPPKPVIGGEESSEVGQREGPGPHPVEADMELGRSHQADSGVRPASTDDDSTRSLHIVEEEQSSTSLPDAQPSSKRTASELSNSGAESASEKRGRAESEHHSPPVDQDSGSSSSSSNECSFLNVALQSTPLRKRADFAFRRTDSQSLPPGCRGIFR
>KenoFr1_pol#LINE/L1-Tx1 1494-4955 RepBase name is L1-1_FR. gi|39652285|dbj|BAD04856.1| reverse transcriptase (Tetraodon Keno_Tn 39652288 92% identical) [Takifugu rubripes]
MTLNISTINVRSVRSRVRAQSVLSFLSSFKSDVFLLQECGLPFLNHYRQWEEMWPQTSLWSGSNENRNDGVAILIKNPQVLVKGSTVVKNGRALLTHLTFMGQDFKILNIYGFNEKNDRYDLLEDLQSHMLGRVPLVVGGDFNCILSRKDRRRTGEDFKVDKTSVLLQGICRDFKLQDCFKTMHPREEGFTWFSGDGTRASRIDYVFTRDCPATDARLTPVFFSDHLMLSCTLSLPSGVTSGSGLWKLNCSLLEDRELVRQYREQYKEWQTLQDFYDTRAHWWEMVKGRTRTFFRQAGKEKKNRETRRMMGLQKRLQRYFNLNQQGIDFNEEIKQVKKEMSVLSEIQSKGVILRSKEREIEEGEKCTRYFFKKIINKGGTITKLTKENGCTTETIDEIKETIESFYEKLYKEKHVQIDTMNEILKFLNKTVNNSVLLSQDFTLLELNNSLCSFKTGKSPGQDGLPVEFYLTFWDLLAPDLITVFMEFEGLDRLPDSFRVGIVTLLHKQKDKTELKNWRPITLLNVDCKLFSRLLATRMSTFLEEVIDPDQACAIPGRKITDSLVLIRDTICYARDRNMRLVVLNLDFEKAFDRVSHQYLFQVLQKMGFPERFVAWVGLLYRDITSRILFNGHLTKAVDINCGVRQGCPLSALLYVICIEPLAQILRRDKRINGVQVPGSGGLETRCILYMDDVNVLCTDLLSVNRTLDLTDWFGRASGSKLNKEKTRAQFHGPWTATDMTGLPLTVTQTDQKILGVKFDREGGGKTNWPDMVGKVRQKLGFWGLRGLTMEGKVLITKAVILPLLLLISSVFFPPRSVILELERAIFYFLWGSKMEKLKRAIMKKTKEKGGKDVPDLHLFLGARFTAIHVGIVTAPSKNPKTAAMARFWMGTYLRKLKIEPVNLSVPVSFNLPTAYSFIQRFLVHFNVENEELHILTNHRSLISVVQEREPVSPVRGLALGEPSTVWRNVNHPALPNRLRDLSWMVAHEILPVRSVMHSRGMAAHATCPRPGCGAPESVRHLLWECSAAKDQWAMAGSLKFPYLPAREVLTAQLVLYGVSPTVIPPKDFAKQWLTLAAIKDATWTSRNLLVRKHMQIPPVAVIRMAAAMVQGAGTAGGRPRTPPQRRIASVPIRTKEPELHSKGQGSSGLALRVR
>KenoTn1_gag#LINE/L1-Tx1 gi|39652287|dbj|BAD04857.1| gag-like protein [Tetraodon nigroviridis]
QGHPKLCGRCGEHGHLDEACEKIVCGKCRAVGHSFDGGMNGRKCNLCGAGDHLFRDCPLSFANELRAQKRQEENGPKVTEMVLIDLEENSNLPPKSVIGGEEANEVKLGEEPKAGADPVEGSSEVAEGDQAGGETPPSSTGEGSIRSLHIVEGEHATSSSPSSSSITDVQPGQKRTASELSTSGGDTASEKRGRAEPGPHSSPVDQDSNSSSSSSNLCSFLNIALQSTPLESRANFAFRRSDPQDSPPWL
>KibiDr1_gag#LINE/L1-Tx1 gi|34392559|dbj|BAC82608.1| gag-like protein [Danio rerio]
MAAPGSGSFNELTRRHGVKIDSTASIEECGLAVGEEVGHDNILSASRMNGAVVVFVKTVDLANLLVQNGIVINGIFTPVLPLSTPSKKVTLSNVPPFIPNEVLTNLLKRYGKIVSPIKMIPIGTKSPLLKHVVSFRRYVYMVLQEHLDELDLSLNFRHEDFNYVIFATTNNVKCFNCGGYGHLIRGCPNKVDNKSNEATLPVATDESDARQENQTAAAQVVEEEAPGPSSGQTAAVLTEPGNIEERESVDRAVDEEDMIVTGDEMNEVENVSTAAEAVVSELFDQREGAIAELDDNLFKTPQKRRREQCPLNERAKRGAGDEPGQTDTESERDFSECSVSFSLPLSGYSSKNYTAHEIKTFLKDTKNARNIRIEQYFPDVRQFIDKVRIYRNEGCFNKQEVFRLRKFIGKINEEMESSASNEN
>KibiDr1_pol#LINE/L1-Tx1 gi|34392560|dbj|BAC82609.1| pol-like protein [Danio rerio]
MKRWSPVLVMRTSRHLYAVFCLWNLLCFWLFLAMGELNIASLNINGAREGKKRFYLFEMIKEKKIDVLFVQETHSDALNACDWAREYNGLPILSHLSSVSGGVAVLFSKNFIPCSYQVEEIINGRLLKIRAQFENSVFVFISVYVPTRAIERMCFLETLSNVLANCNTEDVLILGGDFNCTESSLDRNHVEPHMPSQRRLIQLIHFNDITDIWRNFNSYQRQYTWLHTYDNLLSLARLDRFYGYRHQLNLFKECVISPVGFSDHSLVKCSVTMGQFRPKSAYWHLNTNLLSDCTFQDIFKEFWSNFKSTKSTFCSIQQWWDFAKTQVKQLCQQYTINVTKDRKSTIEVLENEIKAMQEKADASGDLGFIRNFKEKKNSLNNLLDLTAQGALVRSRFQNIESMDAPSKFFFNLERKNGQKRCIYNLLSETGILLSESSEIRKRAVNFYQDLYKSEIISDESDTSDFFNNLPQVPQDFNVELKKAVTLEELQKALQSMECNKVPGIDGLPAEFYKTFWKEVGLDLLQVINESLAYGQLPLSCRRAVLTLLPKKGDLNDIKNWRPVSLLCTDYKLLSKVLANRLSDVLSHIIHPDQSYCVPGRRIFDNISFIRDILDIGKIFNLNFGLLSLDQEKAFDRVEHKYLWNTLTAFGFNNEFVSMLKALYNDVESVLKFNGNLCAPFKVFRGIRQGCALSGMLYTLAIEPLLIKIRAKLSGLSLPSCTNCFKVSAYADDIVVLINGQIDVTLLLELMNDFKKISATKINWSKSEALLVGNWHNAEPKLPEGLTWTKQGFKYLGVFLGDELIMQKNFEDIIEKVRGRLERWKFLLSKISYKGRVLIINNLIASALWHRLICVDPPSDLLIKLQSLLIDFFWDKMHWVQKAILYLPKEEGGHHLMHIQSRVAAFRIQFIQRLLTGPVDSSWKIAACAILRGFRNLGLEKSLFWTDPQKMDWSKLPIFYRNMFKVWSLFKVQRHGNASSLFWLLQEPLIFGSRMDLSNQGILPSVNEILLNAGVVTVGHLFKLAGPAFRNVEPVANRLGLRSKRIVAKLLEKWKSFFTPEEANMLENYADGLIIPNCNDPFPDLYLSTDFKECEGVFLQNNVLFLMGTNSEFGKNVYNSCVKLLNRKSLNDKVDTPWRSVLHLKENAKPEWRALYKPPLPKKVGDLQWRILHGAIAVNAFVSIINPGNSDECPFCSQRETLYHAFMLCNRLSSFFQVLSNLFVCFGETFSMETFICGYKYTRKRRFFCQLLNFLLGQAKMAIYDTRKIQIEQNSSGCLKTFFFNLVKSRILIDFQYYKTMGDLMCFEKIWCYKGVLCQICDENLEFMVH
>KibiDr2_gag#LINE/L1-Tx1 gi|34392562|dbj|BAC82610.1| gag-like protein and gi|34850481|ref|NP_919241.1| hypothetical protein LOC368382 [Danio rerio]
MNKAVVVFLKSESLINELTVSGIWVKEAFVPITPLSAPATKVTISNVPPFVSNEAILKELQRFGKIASPVKGIPLGCKNAALKHVLSFRRQVYMFLNSPERTLEASFRIIHEESSFIIYASTESMRCYGCRDFGHKRFLCPQKNEQRASSSQAETSNADTLRVQGTDEMTGQQEVSELEVNITGSVEKPGCSTDSNADVSNAKCDESKAQSDTEVVCEGGTEQESGSKESFDDEMEGLSQCTDDGLREDDEQWSEVVKKANKDLYTLDQINAFLDKTKGKIGVEISDYFPDLDKFVSSVMSVRKKHNYDELSQQKRFRLRKHLTNIRSTGKIGKTRGKSK
>KibiDr2_pol#LINE/L1-Tx1 gi|34392563|dbj|BAC82611.1| pol-like protein [Danio rerio]
MFKLLVFLFVSLSLSLFYMEILRVGSLNTNGLRDEKKRNLLLESIRIKQLNVIFLQETHSNSNNEAEWGLCWKGEKVLSHGTNLSAGVAILFSSALKVQILMINEIELGRLVAVRAKINDLSFLFINVYAQNNGADRLKLFSNLECFLKQQQDGDFIIIGGDWNCTLDFKYDRNSEEPHMQSASRLAGILKNQYFSDVWREQNASIKQYTWVKINDGRFSGARLDRFYVSNNVKNRVVGANIIPSFLSDHKLITVECTLLNRTHKSYYWHFNNKLLQDKYFCETFKSFWEAWKNEKGLYENIIQWWEIGKVQIKVLCQQYAAQSSGVFKKTIELLEKEIEEIEKSMTVNDAGNLQELWTEKKNQLGSILNEKVKGALVRSRFSTIKDMDGPTSYFFNLEKKKGQEKLMFVLKDDDGQDTSDPVLMRRLAVRYYSNLFAAETTDEQSRNELLQDIPSLTSTQKELLEVDFKFEEVTAAVMDLSSGTAPGIDGLSSEFFKTFWTLIGADYYEVLKECMKKKILPVSCQRAVLTLLPKKGDLTLLKNWRPVAVLCSEYKIIAKCLSNRLNNVLHEIIHKDQSYCIKGRSILDNLHLVRDVYDFAFKNNINLGFLSLDQEKAFDKVDHNYLFETLKAFGFGDSFISMVKVLYNKATCMVKMAGGLSVPIEIHKGIRQGCPLSGQLYSIVIEPLLCKLRRWLTGLSVPELDFQEPVKISAYADDLTVIVKDHSDVHFLREIIEQYGKASSARMNWSKSNALWCGQATNGPMLPGNLQWGRMGFKYLGVFLGTDDFIKQNWEGLVEKVCARLSRWRWLLPQLSYRGRVLICNNLVASSLWHKMMILEPPRDLVARIQKQLIDFFWSGQHWLRASVLYLPIQEGGQGLVDIGSRVEAFRLQTAQRLLYGKDVCWAGIACALLKKAGNMGLDRHLFLMDTNKLDLTGLTAFYRSLLRTWSRFKVSRELGSIRGLWSKEEPLLFNSAMDLNIFKSDSFRKALWSAKITKIGHLVSGGQWINAEALALRLGMRSVRVAERLLIEIQENLPVNIRLTSEEDVSVFPELILSADTGEWQETEGGLLSFRIPQPSLFEDAGKKTLYTLCVKVVHFHMLESLKESKWQTLFEPDSSPKGCWRTLYKPPIEKRSGDLQWRIVHGIIATNRHRAHIDPQVMEGCPFCNMGETVFHLFLNCSRLEMFLYQLNGYCQMLGEVFTPSLFIYGPKYNRNKMHVHVLLNFIFGKAKLAIWLSRKRKLTGLGLTDVFWFLRNLLNPVLK
>KibiFr1_pol#LINE/L1-Tx1 gi|34392555|dbj|BAC82606.1| pol-like protein [Takifugu rubripes]
MRGTGGGSGQARSFSATNCAGVGILFSPHFKTLSAETHHIMDGHVLMVKAVYENMKLVFLCVYAPVLSRDRMNCLNVLCNVVRGVQDEFLFMGGDFNCTVNARLDRNHLEPHPASSARLKRLLETYDLKDVWRGFNNATRQYTWAHCWDNSMSLARLDRLYCFKHHLSIFKNCHIVPVGVSDHSLLKCEFFIQNVKTSSAYWHFNTALLEDHAFRQALQVLWDAHRLRKPMFSSLHRWWDFGKTVTQQFCQQYTRNVTKHITRSLQDLETEVQNLLGCTENRGYVEVHPSIHPSILYRLSGGEVLQSKNAAIASLLGTTAQGALVCSRYMNASMMDAPSKFFFSLEQKNGQRKVIHCLRADDSSDITDTARIRRHGTCFYKELFKSYAVENPGLETEFLTDLSQVGESSNTLLSADLTLEELYVALMSLANGKAPGIDGIPVEFYKAFWSVVGKDMLEVFLESWRTGLLPRSCRRAIITLLPKKGDLQDLKNWRPVFLLCGDYKILSKALAIRLREAMAEVIHVDQTYCVPGRRICNNINLIRHVLDISSSLGIDIGLISFDREKAFDRVEHQYLWNTLAVFGFSPGFIARVQVMYRDVASILKINGGLAAPFTVQRGVRQGCSLSGMLYSPAIEPLLHKIRKTLMGVSFPGCPTAVKLMAYADDVVVIVNTQRDIQVLGETIELFKALSSAKVNWTKSVACATTRDFLGGWWCWVQTGGLKYLGVFLGNDESLKKNWEGVLEAVEGRLKRWKWLLPHMSYRGRTLVINNLVSSFLWHRLAVVDPPADLLSRVQTVIVDFLWDRLHWLPQVVLFLPKEEGGQGLVHLASKRAVFRLQFIQRLLYGPNDLVWRPLARLTLQRIKGLGLQESAFLMELKNVSMSSLPSFYQGLFRTWKLLWKQRANHQSSFWGETVSHGSLLSPPSWAGATVAEALCTAGVATLGALREATGPDLKETTELQVRLGWRSKRNVKRLLSHWRDCLTERERQLLREHSQRMTSPCPEHPFPSLVMRPGPDQQLEVTLETAESKALSRLMVRGLNRQRLERRSRSPWRAKLTLGEEVRPEWKSFYKPPLSKKAADLQWRLVYGVLAVNKFVSILSLSVTGTCPFCEAVETIVHCFAECPRLLPLFPLLEALFRRAGEAFSLRTFVYGFKYTKAKKDKCHLMNFILGQSKMAVYISRRRKVEDSVDCDVVLLLSRRIKARILIDFHFYRKMEDLEQFVRTWTYGGILCSIQLEDLVFSDQLV
>KibiTn1_pol#LINE/L1-Tx1 gi|34392557|dbj|BAC82607.1| pol-like protein [Tetraodon nigroviridis]
MYLFYFILLMCDFNISTLNLNGARSDFKRAALFKLMDIKNIDVLLVQETHSCQKNHSDWRRAFNGEAILSHGSSLSGGVGVLFARRFLPISFTTDEIIPGVLLKVKAVFENVKLVFLSVYAPTNQVERMAFLNILSDCIANSADEGFMFLGGDFNCTVSPDLDRNHPEPHPASARALGRLAESRELADVWRTFNREAKQYTYSHSRGMVLSAARLDRFYCFKHHFNVFKKCVISPVGFTDHCLVTCHVFIKNVRVKSTYWHFNAALLNDQAFKNAFKLFWLSQRESRPAFANIQQWWDYGKAQVKQLCQQLTRGVTKELVRNMKDLEQQVGDIVSSATPTGNRGSLSTLKSKKAALANLLGVSAQGALVRSRFMNISQMDAPSRFFFGLEKKNGQRKIIHSLRTGSGSEISDSSEIRKYAAGFYKDLYRSEWSSNPDMQDSFLRGLPQVGEDTNAGLAAEVTLPELHAAALSLQNGKAPGMDGLPVEFYKSFWDVICTDLLEVVSDSLRTGRLPLSCRRAVITLLPKKGDPQELKNWRPVSLLCTDYKILSKALALRLREVMSSIVHPDQTYCVPGRLISDNVPLIRDILELSSSLARQTGLISIDQEKAFDRVEHQYLWQTLAAFGFNPGFVAMVRALYSDIASVLKINGGLSAPIEVQRGVRQGCSLSGMLYTIAIEPLLHKLRQRLAGVCFPQCPVSFKLSVYADDLIVLTNSQQDIDVLTNTVNDFGFISSAKANWGKSEALMAGGGLGEGLTLPGGLQWRSGGLRYLGVFLGEESFMRRNWEDSLEKTRGKLEKWKWLLPKMSFRGRTLIINNIVSSSLWHKLTVVEPPAPLLSQIQRVLVDFIWDKLHWIPQSVLFLPKEEGGQGLVHLASRRAAFRLQFAQRLLTGPKDTLWRPLSRCVLKRFNSLGQDFSLFLMNTSEISASPLPCFYQSVFKVWGMLLKKRQERAGSAYWLQPEPVLWGTKLDIPNQMKETITRRMRTTRIANLGQVVALTGPRMGDPSGLAARLGLTSVRVIKKLLDHWRSKLSPHDRLLLTSPTRTVGEGELFPAIALAPDFKDCNGPLLKNTRFIPLQETTGKTFYRMMVKTLNKQRLNQRADTPWRGHLHLAPDCRPQWRALYKPPLPKRHADLHWRVLHGIFPVNSFVSTINQTVEDKCPFCDQRETIFHCFYECQRLLPLFSFLRNVFLKCEEFFMKQSFILGFKYTRHQKDKCQLSNFVLGQAKMAVYLSRRRKMEEGFSVEPVVICVNMIKSRLLIDFNFQKAAGDLDSFIQVWGFNNVLCQVVNNSLQFGDVLR
>KoshiFr1_gag#LINE/L1-Tx1 gi|34392549|dbj|BAC82602.1| gag-like protein [Takifugu rubripes]
MNRAVVLFLGKVEQVNTLVETGITVGGQFVQVTPLTQPAARITLSNMPPFISDEFLVRELSRHGKVVSPIRKMLSGCKSPLLRHVVSHRRQVHMILNNKADEFNYRFIVRVDDFDYTLFASALFASALKCFNCREEGHLARACPSRVAPDTPAAEPATPAPAGPVAPQPVPAARRRWLSAEESSAAPDGAVAELRGGGSGTSVSGGSEIVEMVVEMNGESGESRGKVDLTVVVSDLSGVMIDGVCDLNELEKNGEVMGETEKMGEAGETGDTIQTGKLGGVSQVMGELGVPGIAAGELGEEAVSTGELGEEAVSTGERGEGAVSTCEGGEGVVSTGDGAVSAGEGASGMSEWWLVPAKRRNKHKCAMKDKGDTKTGQLEDATDGTDTSDCESMSDCSSLSGTMPDGHENNLYPPSMLKNFLTQTKGMKGLNLEKHFPDMLLFVHSASHLIKHRATSDLTNPEIFRLKKHMGKARKQLKI
>KoshiFr1_pol#LINE/L1-Tx1 gi|34392550|dbj|BAC82603.1| pol-like protein [Takifugu rubripes]
MHTFRVGTLNINGARDERKRALVFDTTKIKRVDVMFLQETHSNRNNEADWEKEWEGQALLSHNTTLSGGVGLLFSRGFTPSSLEVEHVVRGRCLMVKARLQNHSLVFINIYAPTNGTEKELSRKKVGTVLNGCGDDLLFLVGDFNCTESFLDRDHADPHLASFLSLTETAGYSHGLVDVWRRMHTDSRQYTWFRLSEDRISSARLDRFLLLQTSVFSGCKIMPVGFTDHSLVLSKLGIKNILPKSAHWHFNSSLTQDTSFREVLRHFWSGFRGRKSDFMCLGQWWDRGKTEKQLLCQQYTLNATQDTRRSIRDLETEIVELESIGSSTGERGYIEILKSKKMVLSNLLDGQVQGALVRPRIQDFTEMETPASFFFGLEKKRGQNRVIHPLFLGTGHELVEPGQIKKRAVEFFSSLYESEYCEDDVDEFCRELPRVSDETNSWLDRPLQLDELNADLHGMQGRRAPGVDGLTVEFYRAFWDIVAHDMLEVFNESLASGSLPLSNRRTVVTLLPKKVLEVSSSLGVDTGIISLDQEKTFDRVEHKFLWKVMERFGFNPGFIAMIRVLYSDIVSMLKFNGSLCAPFRVHRGVWQGCALSGMLYGLSLEPLLSKIRACIDGLILPSFSKKIVLAAYEDDVMVMLFSQKDLDVLVNLMVLFNCLSAAKVNWQKSEALAVGRWTNGLPVLPQNLAWRQDGLKYLGVFIGDEATMKRNWLDTIERVEGKIEKWKWLLPRMSYRGRTLVPNNLVVSVLWHRLNCLEPPSGLLAQVQRVLNFFWNGIYWVHQGVLYLPREEGGQDLIHPASRTATFRIQFVQRFLTGLTDLTWRDVARCVFRQVNNLVMDDALFLTNFKFVKVNGLPLFYKSVVKARVLREPVVHRAMLNVSNKATPRLMAALWTRMVVLEHIVASAGPDLTGSEAVALCWLSALSKQPKVCCNCGGTGSVQGRGIFSWTTAGGPDQMATISSQRSSWLPIFGDLGGPLLRPTKVFFLHAVDKEPWNCVKVLNRRGLSKRSASAWPDRLGGDGAHPCWKVLYNPPLRERTGDLQWRILHGAVAMNIFISRMNPAVSDQCPFCSVQETAFHAYSECERLPVLFNVLKGVLNGFNETFSIRNGAGYKKTVRNKWQLLNFIWGEAKMAIYISRKNKIEKKGDCEAASVWRCNIRCRLRLEVGFYEMMNDLGQFCDTWCHKSVLCTVAKDQLHISFRSNCIAAFIHVYMCYHYCVLNRVFVSLCNCK
>KoshiTn1_gag#LINE/L1-Tx1 gi|34392552|dbj|BAC82604.1| gag-like protein [Tetraodon nigroviridis]
MNKAVVLFLEKVEQVNKLVEMGITVNGLFEPVLPLTQPATRITLSNVPPFISDEFLVNELSRHGKVVSPMKKILSGCKSPLLKHVVSHRRQVFMILNNRSEEFDYRFMVKVDGYDYQLFATSSLLKCFGCGEEGHIVRACPNRAGSAGAARPGGSAAGRYGKSGARXRRREARSCGAPADRRPRTAEGAAAEQQGEHGDHTEVTSGGGVEDMVVEGAGEVGEVVDNTGEXVGETGEVQGETGKXVGETGEVQGETGEVRGGTDDKVEVAGERVGGRXHSGAPGGLVGELSAAGETIDLIGEVVEIRSETGGRSEMETGEAAGTQSESAATACASVVDPRVLESVFVFSSASAPAKQRAKPRTCCQEWWRGVRPGGWKARQPSLLSATARQRQTCQTAATCPTSPLPVRKINIIQKI
>KoshiTn1_pol#LINE/L1-Tx1 gi|34392553|dbj|BAC82605.1| pol-like protein [Tetraodon nigroviridis]
MMDTLILVLFFIASDFNLSHNMESFRVGTLNVNGARVAEKRALVFDTARRKRVEVLFLQETYSDEHNQADWAKEWEGQVVLSHLSTASGGVGLLFLRSFTPTSVEVEHVVKGRCLLVTACFNERTVVFINVYAPTNGTERKSFLEKVSARLNRCGPEDFLIMGGDFNCTECEFVDRNHAEPHPGSQHALKQLVHSHGLVDAWRRMHADCRQYTWSRLGEDRISMARLDRFYVFKHHFNALKSCSITPAGFTDHSLVLCHVFIKNVLPKSAYWHFNSVLTSDKGFREALIYFWTAFRRRKSDFTCLRQWWDHGKTEIRLLCQQYTLNVTRDACRSIRELESEIVDLEILSAFTENRGHIEALKSKKMALKDLLGTKVQGALVRSRVQNIAEMDAPSSFFFGLEKRHGQRKAIHCLLSDTGQELTEPGQLRKRATEFYSALYSSEYREREDLFEEFCGGLPQVSEATNVRLDGPLSVSELHAALQRMQGRRAPGINGLTVEFYKAYWDIVAPDLLEVFNESLSSGSLPVSCRRAVMALLPKKGNLQDIRNWRPVSLLCTDYKILSKVLATRLREAMEEVIHRDQTYCVPGRSIVDNVHLIRDVLKTSSLLGLNTGLISLDQEKAFDRVEHRFLWKTMERFGFRTSFIAKIQALYGGIESVLKLSFNGSLCAPFRACRGVRQGCALSGMLYALSLEPLLCKIRSSIAGFVLPGFNKNIVLSAYADDVVILTQNQSDVDVLSRLTDSFNVLSSARVNWRKSEALAVGEWRDGLPVLPQSLCWKRDGFKYLGVFLGDEDTEKKNWEDIPGKVEGKLNKWRWLKSQMSYRGRVLVVNNLVASMLWHRLACLQPPPGLLDQIQKKIVDFFWDKKHWVPQGVLFLPREEGGQGLIHVASRTATFRLQFVQRFLTGPADLVWRETASCLFRRVSNLGLDAALFLIDSKSLKVNGLPPFYQSVLKSWALFKNTLQKSSNSLFWLLNQPLLYNARMDISREATPGLKAALLRSRTLVFKQVVDAAGPALTDAGALRSRLGVRTTATADRALTLWRKRLTGTEVLLLAMYSGGMEPNPEDPFPDLYLTPRLGDTSGPLLEKARELNLHTGDKKAIYLNCVRATHRARLNHRPPTVWSSRLGGDGGAPCWRVLYKPPIQKRTADLQWRLLHGAIACNAVVSAFSSAVSNTCPFCGHPETLFHFFSECERLTGFFTLLAQVFNLFNVGFCERTFIYGAGYKKTSQKKWQLLNFVCGAAKLAIYVTRRNKVEGRAGQDAASVWRCSVRCRLRLEFGFYKMTDDQQTFIDTWCFGQILCSVDNNILHLSKILNY
>L1-1_CQ_gag#LINE/L1-Tx1 162-1610  [Culex quinquefasciatus]
MSSVRIRENTFKLCLKNFPKRPTYEEIHAFVHDKVGLKPTQVTRLQMNHSQNCVHIKCVDLKTAQDAVINHNDRHELVVDKKRIKVRLMMDDAGVEIKIHDLSENIRNEEVAAYLKQYGDVLSVRDVVWSESFKYKGVNTGVRVAKVVLRRHIKSFVTILGETTMISYRTQPQTCRHCHNQLHPGSSCVENKKLLGQKQDLNKRLDLARNQPSAGSSYADVLGRMEEAATPLMPQFTPTNLTQLHEQLRGVAVEGVEASSSLSATVPSPPPRAEGDVSSTVVPMEQSAIEQAVIEQSVFEQSAIEQAVIQQAAIQQAAIQQAAIQQAAIEQSTIEQAKIEQAAIEQSAIQLAANEQASNEQPTNEQAANEQAAIEQSELDQSAMELDAQSDEVKKDGISSVPNDQSTQQAEGEMSVEADACSSSVSPFVFTPPLPAPSLPNDPLMQISDSESTTDSSQEVDGAPFQKVNRKKRGRPKKPKLEA
>L1-1_CQ_pol#LINE/L1-Tx1 1635-4838  [Culex quinquefasciatus]
MSNNPLSYNIASININAISNENKLQALHTFLRLQDLDIVLLQEVENPNMCIPGFIVITNVDSARRGTAVALKSHIPYSNVQRSLDSRIITVKLGSSVTICNVYAPSGTQNQSAREFLFRHSLPFYLQNSAPNLVVGGDFNCVISTKDATGCNNFSNSLKRFIDSQNLVDSWEHLNRNAVAFSFVRPNSASRLDRIYLSHSLAPHLRSTDFFATCFSDHKAFKVRCCLPDLVGNGHGRGYWSIRSHVLTEENLAEFEEKWTRWLRERRNYTSWLGWWIECAKPKIRSFFRWKTNQAFREFHATNELLYARLRRAYDELLLNPGSTAEVNKIKGEMLLLQNRFSKAFERINDKFVAGEKISSFQLADRNTRKKKSAIDSIRHRNRLLTDPAEVQNHILDYYKTLYSLENAAPNTNFPTNRAIPPGSDSNERMMEEITTEEIYFAIKSSASRKSPGSDGVPKEFYLRAFDIIHRQLNLILNEALCGNIPSNFVEGVVVLAKKKTDEDTIKAYRPISLLNFDYKLLARILKQRLEKVMEENHILNAAQKCSNQHRNIFEALNAVKDRVAEFNCRKRSGRLISFDLDHAFDRVSRSFLLVVMRSMNFHPGFVSLLDKIMSMSSSRLLINGNLSSPFPIQRSVRQGDPLSMHLFVLYLHPLLEKILQICDNPHELVVAYADDISVIVADDNKLDQIKQAFADFGLCSGAVLNTNKTVSINIGRQQSGRRTPSWLNVSDSVKILGISFFNSLKQTINFNWGEVIRKTSQLMWIFRPRVLTVFQKVILVNTYITSKLWFMASILSIPNAAVARMTSQIGSFIWERYPTRVAMEQLGLPIDQGGLNLHLPMQKCKALLINRFVHCQTNMPFAESFGSQLKNPPNPAGVPALYPCLKMLARELAYLPPRLAENPSTTSLLSFYREKANTPKIIEENQAISWKRVWRNIRCRELTSAEKSSYYLLINQKIPHAALLFRQNRVSSNFCEMCPLXVEDLEHKFSQCVRTVHLWDFLKSKLESILNRRVTFKTLVLPEMKNVSPAAKNKALKMFITYVNYVLEATSSLTVGALEFVLQCNCL
>L1-1_HM_gag#LINE/L1-Tx1 103-1128 No matches to other gags yet.   [Hydra magnipapillata]
MSKSYAGVLASPSQNGNPKPKLGIFNSKPVEENSYVLVCRYGDLNISINEFLAALAQKDLLTNVWGVTRHYAHKYFEFAVHNSTLIPLFLKSEIIFKNCVLTFQQKFVRKIHVLVQNIPIGILRSGCKDAITKLGNHLALGRGQFDSFYCQSVKVHGEEIFTGNVIIIIKNWTNPYANPLPRFENVDGLTLRYKHNGQPESRLKTTEKPTDADTSQGKNSEVVESVKETDEEPSTQSSPKQTEPEELEVLKSKKAVQKTQNEVVAQIVCDTKESTKPKRKSQNDLREGETPSKQVTPNQTQVMNDVEMEGTCSSEIAEEQNNDLIFDYEKYDLIKSAGEKS
>L1-1_HM_pol#LINE/L1-Tx1 1509-5021   [Hydra magnipapillata]
MTVNVLTCNINGLNDQEKRENFFGFLKKSSFDLILLQETHSGPSTVQQWGDEWTGESIWNSGPSHNSCGVAVLSKSNISLSELKRDTNGRILNVIIKFDEHEMQVMNIYAPNVPRERRHFFGDLVDFSQDTGLPVLLAGDFNMVESLPLDTEGTNNAKYHTYGVDELGVFQGKYNLVDVFRLKFPNKREFTWRNQKAKCRLDRIYCPEKIAKKTTYTKILTNPFSDHEFVTTTVNFSKTRRGPGYWKLNCSLLEIEVYRQKIELSIKDWQTKKRSYNSILKWWDDCKLFVRVELQHISIQESAKNKKQIKRIENEIQRERQNANPNLDSIKEKRDALFLLHFPGAFIRTKQKLVEEGEKPSKFLYSLEKTQQRNKSITKVRKNDGTLTSEPGEILNSLVSYYKNIYTKTNLCKDSQNYVLSHITKHLSDDENQLLNTRLTGAELKEALFKFENGKSPGYDGLPAEFYKTFWHILEKDFEELAYEILFVEKNTSHSMKRSIISLIPKQGDLTECKNWRPISLIGADYKIITKALALRLAKVMGKIIEPNQTCGIPGRTIFSNLHLVRDLIDYAEIKNLPSFILSIDQEKAFDKVDRAFLLQILQKFNLGENFISFINTLYSEISASVLNCGFLSATFPTERGVRQGDPLSLLLYVFVAEALALVVRADSRIEGFPLPGTSKPLKLQQYADDSNFFARDVKSVRFFFEAVKLFEKASGSVINASKTKGLALGGFDPKMYPELDNIEWTNNTGFKILGVTFYTRLSNTTNFNWLVTLNKIEKKLKFLGLRTLSLRGKTMLINTLALSKVWFLANVLPVPEWVIERLHSAIFENLWQKTNFNPVKRETLFLPVKSGGLGILSPKEQSLALRLKTLFQLKECGEDNTHDNYYFSKYWLASSLIKFTNQNPSWNFLKQNNFPKHWDNKMSQYYKTTIEVLGKNGSLFNIPLKSTKNFYLEVAKNKKTVVPAELFWNGSTKTTMPWTQIWKKNFTSHACGPTQNILFRFLHNSLPSAALLAKSTRQQIVQNNKCKTCGKIEDNLHIFAYCPPSVEIWEYFKHVYNSLTSQTVFSPINSIFSIGTANLSEKNPTSQLLLTLTQTIMSEIWNSRCHHMFSNMKTDPMAVIRVIIRKIRIIINLKYNYHVRRNTTDIFCQLFCIKNIICQVENGRLKLNI
>L1-1_SP_pol#LINE/L1-Tx1 125-3942 via tfasty with Tx1-16_BF_pol, 1 frameshift. [Strongylocentrotus purpuratus]
MQGDVTFISMNCRGLANDKKREDVLLYLKSKQYDVCCIQDTHFAPDIETEIRREWGGKCFFSYHTSSSRGVAILFKDTIPVKVNRSRIDNGGNLVVLDLTLYEYDITLASLYGPNTDNPTFYTDLQRIITEFENPHVVICGDWNLVQDQTLDTHNYVHVNNPRARQQVKNMKDELDLCDPWRIRYPVKKYYTWRQPNPFKQSRLDFFFISSELLSLVHKSDILSGYRTDHSLVRLSLTLNKIKRGPGIWKFNNSLLKDENFVSKIIKTIKETITFYAKDEVEFDENDNIVGNCEFSINDQLFFETLIMLLRGESISYGSFVKKQNVSREKELERNIEVLERRLVTSNDKTALLKELSDKKSQLETYRLKVNDGIIMRSRIKWMELGERSSKYFLNLEKQNKVNKEIRQLSTENGDVISGQDGISNEIFKFYSNLYKAKDTEEVDIDTLLNYPDIPKLTPELSTLLEGPLSESEVCLTLKSMKNNKSPGQDGFTVEFFRFFWQYLKTFMIRSLNFAYFTGELSQSQKLGIITLIPKGNKPRHLLKNWRPISLLNVIYKIASGCIANRLKRVLPRLIHENQKGFLKGRFIGENIRLLYDILLYTELNDIPGMLLMIDFEKAFDCISHEFLINVLDFFRFGPSLIKWINLFYQNXSSCVTVNGFCTERFTIGRGCRQGDPLSPYLFLLVSEILGILIRHSNDLIGLHLQGKNXKLLQYADDTILTLNGTKEDLQSSLKILGDFEEMSNLKINITKTHVIWIGKNRACKKQLMPEHKLNWVSEGYSRYLGIDFSVNLVEMVNHNYTEKIKDIKRQIISWSKRTLTVLGRITVVKSLLVPKLNYLLLSLPEPNSQIMKDINRSFYAFIWGNKPDKINREQMCQLYNKGGVKMIDIYIHAKSLKISWIRRFVTDSQIESFTFHMFNSFLPQTYFFHLYMGSHYFRKLADLTPNPFWKEVLFAWSDLVELLIDDIASQPLWNNPHIKMNDKVVCFGAWNLRGIRFVNDILKIDGSFXSYFEFQRRFDIQTNFLQYYGLCNAIRSGFKMTTHVAPSKALEPIIPEAVHLVVKTNVGCSHIYQSLLKNKVKECKALTKWKSFLDFQDVLWGSYCQIPFQSTIDINMRWFQIKILNRILYMKDSLLRFGVVADKKCTFCSNNDETIIHVFCFCNYSNEVWSKLEFWIFRNTGERIKLTNQNKLFGFCGSNNNALNCVLMVVRQEIFSAKLRNQLPSFDIILSAVKRYYEMEKYIYQTNLRENKLKKKWFHFRKYFESVGNVLT
>L1-2_CQ_gag#LINE/L1-Tx1 185-1606  [Culex quinquefasciatus]
MAQVRSRENTFKVDLSNFPKRPSIEELQKFVLVKLGLAVGQVKRFQVNHAQNCVHVKCSELKVAQDTVAMHNGKHVMEINKTKVTVRLVMEDGGVEVKIHDLSENVTNDDIVAFLRHFGDVLSIREVSWGEGFPLRGMSSGIRVAKMILRRHIKSFATILGESTLISYRGQPMTCRHCTLTQHIGMSCVENKKLLGQKADLSARLKSASGSTSTSYASVLNGVAPDTNTLLPEFSGTILGPVIPQRPIRPESTGTAPNAPQSGAATSATGHSADGSLNISGDGTSSVQTSGSTDVAEHSAGSEASGGGTSSEVSNTLASETEVSAGSVATAIEGGALIDRPNESELASTSDMILIPLPPAAPAAEGDNKETEEMETESPSAADDAAELNTPHPKLPCEEEDAEMPAVSDLASCESVSPFEFPAPIPVPIPHPDLKKTHSLSSISGTESEGSARSGEFTEVKKKRRPGRPKKPKV
>L1-2_CQ_pol#LINE/L1-Tx1 1639-4833  [Culex quinquefasciatus]
MNLPCSYNIATININAISNDNKIQSLKTFIRSTDLDIILLQEVENPNLALPGFNVLTNVDDSRRGTAIALKSHIRFSNVRRSLDTRIIAVTLRSMVTICNVYAPSGTVNAASRERLFNNTLPLFLQNCSDHCILGGDFNCVIASKDATGTSNHSLALKNLTSNLGLKDAWEVLKANQIAYSFIRPNCSSRLDRLYVSGAFVPGLRTAEYLVTSFTDHKAFKVRCCLPDQGRPTGNGFWSMRAHVLTEENLEEFELKWNRWLREKQNFNSWIEWWIRCAKPRIKSFFRWKTNEVFRRFNVANELLYGQLRAAYDNLTNNPAMVPEINRIKGKMLLLQNNFSKAFERLNDKFLGDEKLSTFQLGDRAGRKKNSTISSIKHQGRLLEDSAEVEDHIFDYFRQLYSAEDVQLNRDFPSNRLVDPNSEANNRAMEEITTEEIFTAIQTSASRKSPGCDGIPKEFYVKAFNIIHRQLNLILNEALRGGFPEQFLDGVVVLSKKKTNLETIKAYRPITLLNYDYKLLARILKVRLERIINENRILNSCQKCSNARRDIFEAVHAIKDRVVELNCKRKTGKLISFDLDHAFDRVDHTYLLSVLRSMRINENLVALIGRLMCSARSRIIINGNLSAQFPIQRSVRQGDPLSMLLFVVFLHPLLEKLLAICNHPKELVVAYADDISIILVDETKLAEVRRAFDDFGLCSGARLNIAKTTAVNIGPQRENSTGAGWTTVCDSVKILGVIYFNSLKRTIEENWRETIRKTSYLMWLFKPRDLSIHQKVTLLNLFVTSKLWYMASVLSMPNACIAKVTSQIGQFIWGRYPTRVSIDQLALPVAEGGLNLHVPKMKSKALILNRFIRGSSETPFAASFVSQLDNPPNLSGIPALYPCLKAIARELPYLPQRLIGQPTATELHGYFRRTLTTPKIMNEHPAVAWRSVWRNIRSRVLTSAEKTSFYLLVNRKIPHAELLFRQNRLDSGTCQHCLGAVEDLEHKFAKCTRVRHLWNFIQSKLGAILNRRVSFNLFLIPELNNIEANSKSRALKLFIFYINFVLDPDCSFTLASLDFAVSLVC
>L1-2_DR_gag#LINE/L1-Tx1 410-1725 via tfasty with L1-3_DR_gag, 1 frameshift. Named MutsuDr1 by Kojima and Fujiwara gi|34392565|dbj|BAC82612.1| gag-like protein [Danio rerio]
MDGSTVTDLAMADGVEKANDNGLDRRQQETNQSEKEARKRIYLKEATVTVDIGQATEVRAIDVIKAETERIGDGKILAVRPKHNKEYEVTLEREEDADELMDELTIKGINCAVKRLQNRDYVVSFMHLPVYVADKDILDKLDHWGVCPISKIKRRFYPGTNIEDGTRFVKTRFPKELASLPYSTRIETAEGPQYFRVMHSHQVKTCRLCLSPDHVVKDCPDFRCYKCEERGHFAKFCTAVKCPDCNKVLNKCECWIGEEEEEVEQQVGRQMYEGDNIQSEDKTTTQEKSTESESEKLQENETNGIDRVTEQEGTTWTQMDMTDSLKSVLEAAELSDSNNKDLNQGQQEDTFWTQMDITDSFQKALDTEETKGQSNDEQADLEGHLQKDGNKETQGKSAKRRRSLKIIPNLETVRKKLLKDEEIECANKYELLKGLEDMD
>L1-2_DR_pol#LINE/L1-Tx1 1730-5581 Named MutsuDr1 by Kojima and Fujiwara gi|34392566|dbj|BAC82613.1| pol-like protein [Danio rerio]
MMFFMNVFMSFMNVFIFFMVLGIVSFNARGLLDIRKFEKVKEMCKREDVILLQETNWREECMKEIRKRWSGEMLYNNGDGRLGRGVAILLKENSGVLCKTIYNDKEGKCMICEMEYERKKVIMVNVHAPTEENKKKEYYNVLRDYLKKHERVIIMGDFNTVFSKLEMAEGMVFKTDKGRKELKILMEEMNLIDVWRERNEQTKEYSRRQIVGNFCCQTRIDFILCTRNVEGFINKIKYEETSLSDHKPLFMKLDWSNVKRGPGVWVLNTAVLKNEDYVLSVKEIIQKEKGNEIYNEDKRMWWENVKYLVKKFTIKYCRQLQNCKKYKEKELKEKLENELKNENGKNIQKIKELQGRLNEMEEEKFEGARLRSKAKFTVEGEKCTKFFFDLEKRRGKSEMIREIRSKNGNVVEQHEEILEEIRSYYEKLFCTEGIKEKEKGELLNLIKSRVEEGEKRECDEEIREEEIKRAISGLNKKKSPGIDGLGSEFYIVFKDILSSILKEVYDEIFENGEINKRMGMGLMKVIYKGKGDKVDLKNYRPITMLNTDLKILAKVLANRLKEVMPSIIKTNQAYSIKGRDIADTTMSIKDTIRYINDKQKDGFLISLDFEKAFDRVEHDFLFGVLKSFGFGENFIKWVQILYRGAVTRIKCNGFLTDCFKIRRSIRQGCPLSALLYALVAEPLGLAVKHEDRIKGIEVEGGVNKIFQYADDTTLILQDLASVKQAMETVQHFCKGSGAKINENKTGYLRFGRTEALSGHFTFKEMDEIKILGIVIGRDEKKAEVTMWEEILGGIERRLRFWKLMSLTLKGRVLILSVLMVSKLWNILYVSSMPLWMEKRLKQCFLDFLWEGKPPRIAYATLIGEVGKGGLGLIDVEQRKNSLRVKMVRKYLDEDNKAAWKRTMEYFLSKSGNFNMGDNILYMRMKKFMTEGLPDFYKELIGAWGKFLTCVHFNIQGRENILNQPLFLNSGILNQEKVVFFRKWWEVGITRVRDVLYEFKEGFLPVQYVIDVMDEAKEDFNRQDLIKEYDIIKNAIPAEWLTRIENMEENKQSKDVIVRFGEKWWNLKDSTVKMIYGFFRDGVFKKPRANENWIRMFKDVNEDNIWANIKGKLVQSKVENLEYLIRNKAVFTDIILNKIGMEESVTCKVCQDADEGFLHLFLYCNELKDFNEKCKSIILTLKGERDDELEWEKVLMLGVNKECNNEKLINLLVMLRKSAIWERRVAAKKEKAVLDVWNVFKRKVEKYVECLFYYFKLEDMQEAFYDVFTQEVSKILNDTGMKMPF
>L1-2_HM_gag#LINE/L1-Tx1 100-1272   [Hydra magnipapillata]
MASYAKAASVVSSVGERIVEFKVFMDMIHANNQHYVNDRAKEIIEKINEKVGRNKIESLTYHRDGRWIAVFNSIDDAIAMTRNEVAITNCKSPVFFRRREQYGFLITIKCDPTIQDDELTEKLLPFIESVISIQHTTYSFDHTVKDGRRLFRVKLNCMVKELPHHIEINGAKILLNFAGKEFLCRLCGNTHVPRERCVSSVLNSNDKKLNNMEKNSVAEKNQKIDSEKKKDTFQFSVPASLTSNIFLRGEVNDCIYKKNNIPTFNFLDKQSLELPNEVKNKIKNTQKEYQSAFDEARKLEKQKQEKHHPVETLVIDEDRFTEVKSKTKKKKBKAKKKEDGEISSGSDFDADFDVSMNENINERKRIHPQTPIKEKPTTKERRNEKPKWQT
>L1-2_HM_pol#LINE/L1-Tx1 1514-5353 via tfasty with Tx1-2_NV_pol, 2 frameshifts.   [Hydra magnipapillata]
MQQLKFYTSNVNGLSNGSKRKTVINNLKNRPHDVILIQETHLDNDTINLLKKDWDGDVFFSPGAVYTRGTAILLKQKCEKPIFLGNDSKGNFNYVALKINDIKLLIINVYAPSGGGNSQKLRITFFNELINEFSNKDFNDFQIVMGGDFNVTLSEKDRYPAMFRQECPSIKNLKTLLNLLEIEDVWRVFNPLQTEYTFAATNGVSHSRLDRFYISKKARQNIKTFFEPTILTDHYNAQVVVLNINKNNIKSETWILNNKHLENEEFKTLIEASWNEWAHQKNNYENIKDWWEAGKEKIRLISKKFSKKLKQKQNKKEFKLLKLLKNASQKMHVNNNMKKLYNDVKMKIEQIEKEKAEGAAIRARIQWRLEGEKCSKFFFGLEKQKLAKQYVTEISGSDGEVKTEQKEILAEFEKFYKNLYKNKVNDKTSQEFLFSNAKVQQVTEVENKLLEKEISEFEIKQALGQMKNNKSPGSDGLTIEFYKKFFEIIKKDLTDALNNVLFTGEMTNSQKEAIITCIFKKGNKNDIGNWRPISLTNVDYKILTKCLANRLKNILPNIIHSNQTACVKNRTINYNLSYTRDIISIAKTSDLDACILSIDQVKAFDRVDRNFLLKSLKHFGFGRGFIFFIETIYKKIFAKIKINGCLSEKxINILRGVRQGCPLSMILYIIQAEIFSTFVRQCDKIKGIIVEGKETKIQQYADDTNFYLTGENSILEIGKALKINKKATGXKINIAKCQGIWLGKNIFEDKQKFLNFNWDENSFKSLGVVFSNNGRFSYETHWKERFDKMESSLRKWQKWKLSLKGKKTIINSLIIPQILHIAFVVPLPNKNYLDKMEKKINNFFWGSRVCRLNKTKTQQKILKGGAGVNNLTNKLKAIQLQWISKIHSENISGPWKDAMINILNSYRDANQNIHVFKTNPTQIKQLPPFYAQLITNWHELKEKHKLPVTEIEEILNEPIFYNKMIQKSPKKFLIPDKSHIENDIVLLADIAKTFQPGFLNHKSVNMSEKNLSEIIKALPPEWRRKILTQSQKYDFKKAPQYIAKKKSKYELKNLTVLTLYKLLNKPIKKLEYKYNNWKSMFDSMDNLNDNDWKHFFVNISKRNTNNKASEIRFKAAHFILPTNDKMFEIKVRKDQLCPQCKTKVETTAHMIYECEKVQPLIFYLLDILDQLYPLEYPHINNLKFILFGYEKRAKQRVFGNILLDVLLTEIFYNRMKSHFDNKVFTNKYLLKKLKAKIEKVLKNELLIIFKQNKQEIHKEEIKNIFCNGSLRLVADICNYF
>L1-3_CQ_gag#LINE/L1-Tx1 156-1226  [Culex quinquefasciatus]
MSSTIRRVNTFKIDFASLPKKPRFEEIHHFVKTTLGIPKEKIERLQVNHYFWCVFVKCVDLATAQQTVLQHNNKHAFEIDGKKYTIKIQMEDGAVDVRLHDLPEEITNDQVKKFMSAYGEILSVRELVWEEKYELAGLKTGVREVKMILKHQIKSFISIEGQHTYVTYIGQQTTCRHCGEYSHSGIPCTQNKKLLLQKVSVNERLKDAKKPTGKSSYADALMTKPSPRFVPAVLVEDNTGMDCDGDNTHTDAENSEITTEGNGSSGGGSGFAAEPGIIIQDGGSSGGASGLADMLQKTTPILQETIIRDGDQLCVFKTPLTLPQDGDGAEESDGSSTSSASGKRPRGRPPKKPKTST
>L1-3_CQ_pol#LINE/L1-Tx1 1263-4457  [Culex quinquefasciatus]
MDYQSFNIGTLNINTISNQNKINALHNFTRTHDLDILFLQEVYSDELIIPGYTVICNVDHNRRGTAVALKHHIKYTNVEKSVDSRVIALRLQGSVTLVNVYAPSGSQQRTHRETFFNTTLAHFLRHQTNYTILAGDFNSVINARDATGEGNHSLALKNTVQQTRLKDVWEALHGTRVEHTYITHNSASRIDRVYVSSNLRDQLRTAYVSACSFTNHMSLTTRLCLPNQGRAHGMGFWSLRPYVLTDETIEEFQQKWNYWTRQRRSYNSWMQWWLRLAKPKMKSFFRWKSKEAFDDFTRKQQHLYAQLHQAYRAYLHNPDMLTSINRIKSQLLLLQKQFTQLFVRINDTHVAGEPLSTFQLGERTRKRTIIESMENDAGASLESSDEIQEHVVNYYRNLYAEGETRANPEFDCARVVPPDSISNHACMEEITTAEIYEAIKFSSSKKSPGSDGLPKEFYVRTFDIIHRELNLLLNEALRGDIPEEFVNGVIVLVKKKQAGNSITAYRPISLLNYDYKLLARILKARVDRVLREHDIISPVQKCSNGDRNIYQATLSLKDRIAQLRSQRLSGKLVSFDLSSAFDRVDRGFLYHTMNSLGLNPDLVNLLERIGERSTSRILINGHLSAAFPIQRSVRQGDPLAMHLFAIYLHPLVARMERICDGPHDLVVAYADDISMITTNADKAEQVRGLFRDFEGCSGAMLNLRKTTAIDVGHINDRNRLALPWIQSSESVKVLGVIYLNSLRQMINKNWDTLITKMGQLIWLHRMRSLTLHQKVTLLNVFITSKMWYLSSVLAPYKVHIAKITSIMGSYLWHGHQARVPMHQLALPIEGGGLKLHLPYFKCRALLTNRHLQESNSTPFYKTFMQRIQNPPDLHRIPTDCPCLKVVCQEIAYLPEQLINNATATGVHTNLLQQVATPKVMSSDPTLDWKLIWRNINSKKLKSAERSWYFLLVNKKTTHGELLHRMNIVNTPNCAHCGAQREDLQHKFSTCSRVAGAWRTLQRHLAAAGMNGTTSFNSLAQPELRRLRRDVKHKVMKLFINYINFINQCNNQIDVDSLNFHLENEI
>L1-3_DR_gag#LINE/L1-Tx1 211-1560 named MutsuDr3 by Kojima and Fujiwara gi|34392571|dbj|BAC82616.1| gag-like protein [Danio rerio]
MMDSQSNSTDLFDEAHGENITGRSGERQKENSTGLRGERQLENNTGQEGERNMVNKERQENQQQEMQQQRSGKKYMKEATVILNVDKVKEVRVLEIINAVTEKCGLGKILAIRPRQDKDYELTLENEETCDKLMDGLIIKGETCEVKMLQNRDYVVSFMHLPAYLDDQLILDKLEGWGVFPITKIKRRVYPGTEIEDGTRYLKVRFPREVISLPYSTRLETAEGQQYFRVMHSHQVKTCRLCMSPDHMVKDCPDFKCHKCEERGHFARDCDAIKCPDCQNYLSKCECWMEEEEEEDEIQVSGQMHEGNSEKESNEEEQTTTQTIQTTTEEITLKEENAKKEKEKETETDSQQIEHEEEVAWTPMDITSSFKNVLDVIEKEDLKEQSKGTDRETGKHEEEVEKDKLEKRQTRRSAKVLSKLETARKKGLKKGQLKSHNRYDSLRGLGEEED
>L1-3_DR_pol#LINE/L1-Tx1 1565-5404  named MutsuDr3 by Kojima and Fujiwara gi|34392572|dbj|BAC82617.1| pol-like protein [Danio rerio]
MTVFISFFLLLMVLNCVSFNARGLMDLRKFKNVKEKCKREEIIILQETNWKNEVMDIYKKEWDGDFYYSNGDTKAGRGVAILIKKNALQMSKVIYKDKQGKCMILEIKYEGKDIILVNVHAPNEESEKKSFFNILRRFLKNYKQIIVCGDFNTVFSRQDITEGMVFKSDTGRKELKSLIEEKGMIDIWRERNGKKKEFSRRQIVGNFVNQSRIDYVLCTRNIEIYIEKIRYDETVLSDHKFVFFNFNTEEIQRGPGVWTLNSEILKNEDYVKKVKEIIEKEKGNQIYNEDKRLWWENVKFLIKKSTLTFCRIIQKNKRHKEKTIKENLEIELDKNEKDIQKIKEMEGKLKEIEEKKYEGARLRSKAKYVVEGEKCTKFFFDLERQKAKAETIKIIQGAKGESIEGNEEILKEIKKYYEELFKTQGVDEVQMSKLLKQIKTKIDEEDKKECDQEIGEEEIRKAIESLNKKKSPGIDGLNSEFYVCFKEILIPILTDVFKEILQKEELNERMGMGLMKLIHKKGEKTLLKNYRPITMLNTDLKILTKILANRLKEVMPKIIKTTQAYAIKGRDIADITMSIKDIIEYMKEKKEEGYIISLDFEKAFDRVEHQFLFKVLKKFGFGEVFRKWIKILYKGILTKIKCNGFLTECFKITRSIRQGCPLSALLYSLVAEPLGLAINEEEKIKGIEIEENKVNKKMFQYADDTTLIVKGKESVKEAMKIVQQFCKGSGSKVNEDKTVYMKFGKETDLAECTNFKEVEEIKILGVLMGKDARKARDKMWEGFLTDIERRLNYWKLRTLTLKGKVLILNVLMESKLWHVLYVLEMPMWIEKRLKKCFTDFLWGGKPPRIAFNTVVGEIDKGGLGLIDVEQRKNSLRVKRVKKYLEKENKAEWKKTMKYFLNKCGNFNMGDGILWMKTKAWMTENLPEFYREILGAWGNFLKQVEYSPHGRENILNQPLFLNNNILSQGKVLYYKKWIEVGILKVRDILYEFKEGFLTEQYVIDTMEEAKEEYNRKEIEKNLDIIKQAIPKEWIRSIEKFEKEKETKEVYVKTGEKICNFNECTVKNIYCFFRENVFKEPTANKYWIEKYKNVKANEIWGNMKGRYVETKVECLEFLIRHKAIFSDVILNKIGMEQSGMCKVCQKEEEGFLHMFLYCQKLEGFLKDCKVLIKGLLGDWDENETEWNRVVMLGWNKNNENKKIVNLCIMLMKNAMWERRIVAKKEKMVMDVWGIFKRKMERYVEKLYVYHKNENILSELHKILTDKACQVFKEMNWKLPHF
>L1-3_HM_gag#LINE/L1-Tx1 18-1002 via tfasty with L1-2_HM_gag, 1 frameshift.   [Hydra magnipapillata]
MASYAGTVSNKINRMECVLDLNVFMNQSEIFNRKYQENRAHEIYQKVSSIVGNNKISSLTYNAKGNWVIEMKQKEDAIILNDSTFLLSGSNQNIMFxIRSDIGLLITVKCDPLIDDHEILAEMKPFISELYSITHTTYRFDRNLKDGRRLFRIKPSVKLNEIPHTIEIEGIKIALHFAGKSFLCKTCQYSHPPQQRCIAQKPIEKATEIVLEKLNRKNRDESVDSITIQNASESKHKHVSKPSDSKIPLLLPIEPVFEIVKSKKHKRDERKQNQTQNEQNELTENETETDIEDEEIQSKSDKKINAKNASPTTPQKEGPRRKPRQRAV
>L1-3_HM_pol#LINE/L1-Tx1 1187-5040 via tfasty with L1-2_HM_pol, 1 frameshift.   [Hydra magnipapillata]
MEAIKIFSVNICGLADVKKQSRIIQKFRKMNFDFFLLQETHLNSQAAKKFINLWNNPGYYSNGTSHTGGTLILIKNLNYNLKVIEHFEDPNGHYNYIIVENDYHIFLIINVYATSGSSYTDQIKRKKLFKNISKKIKIKNSNNQFTILGGDFNMVLDDKDRYPQINRRKCLSTCNLKTLLTTLNIEDTWRILNLNALEYTYKSTNNISFSRLDRLYISKHMRQHKFIEHEPMTFSDHQNAICATISINNIDIGKDVWVLNNKNLSKYNYTDNVSKIIKIGCQKIYYSENKTSDWDLLKQEIKLFSQKFSKSEAKKTRVEEYRIKKQLKNSLKKSHYNPRMKYLSEILKVKLQSFEINKIKGAEIRAKVKWRTDGKKSSKFFFQLEKAKTSKQIITLIKDKNGNEKTNTREITKCFEQFYKKLYKNTNNDVTLQKFLLNNTDIKKITKQQQRSLDEPIMLYEVENAIKTMKNNKSPGNDGLTAEFYKSNFNSLGESLVKILNEIIKKNEMSITQKQAIITCLFKKGDKSDISNWRPISLLNTDYKILTKIISNRLTKILPTIINENQTSSIPHRTVYQNLAYTRDIIYIANKKNLDASIISIDQIKAFDRVDRNFLYDCLSKFGFSVYFINLIKTLYYDISSNLKINGFLSDKINIYRGVRQGCPLSMILYIIQAEVFAGYIRKNPDIKGITLDNKETKLQQYADDTQFYLSSDNSIKALGNAINIYKLATGTKLNTAKCQGLWLGKNRSIIKENFLNFSWHDTTLRSLGIIFSNCSQHTNHQWDEGIAKINKKIENWKRFHLSIKGKAIIINQILLSSLWHLAFTLPIPGDQKIKQIEQEIERFLWNNSTIKTPKQISKLPVDKGGLNIIDVKEKLQSIQLSWISKNFNENEKGAWKDSAFYIFNNYRDANQGNLIFFTTHSTESLKTLPLYYHQTIKKWSRLYRKTNNHTNLTIEEILKQPIFYNPYIRHRNKTLKPTQESKNNDVIKLGDIAKVFIPGFLVNQLIGIKQLLLTKIINSLPPQWKQLINTQSQMFDHNKSLTYIHLKNKPPLCIIDLNSKTIYTISKNYKTTNIPEKYFRWQNHFKSMKNTAAKEWSQLFCSIHKNNTNNKADEIRYKLIHFALPTNLKIEDTxKNDLCPQCKKKKEDLPHMMYKCKKVQPLIKYTFALIRKIYPNHPPLKNIFKSFLFALSPSVNSFYIGKIILNELLYKLYCNRMRSFHKKSMFARVTLLEEFQNKIKKILFQEFEISKLTNKKDFFLLELAQIWSNENKINIKMNNNLFLN
>L1-4_CQ_gag#LINE/L1-Tx1 157-1248  [Culex quinquefasciatus]
MNSQNNRENTFRVDFSNLPKKPSVKEVHQFLARDLGLPREKTKRVQINHVQNCVFVKTADLETAEQIVEDHDGKHVREVNKKKYTIRITMEDGCTNVKLHDLTEDVSDQQIKRFMSQYGDVMSVTELLWSDDLDYHGISSGIRSVKMVLKRPIKSYVTIQGQCAYVKYAGQQSTCRHCGEYVHIGIPCVQNKKLLVQRVSVNERLKPGAKESFASVLKSGSTDTRQDDNISSSDDEERDSAAMSEDDDEYTVVRYGKGKHPKLPKPIKSKPRQETIKVNPIATPGGTPLDAVVEQETDKEESVFKTPLLLPGKHKRNDGNDTDTSTASTASNGKRGPGRPRKTKPTDVDTQPQASPSADEPMQP
>L1-4_CQ_pol#LINE/L1-Tx1 1255-4446  [Culex quinquefasciatus]
MDFLTYNIASININTISNHTKLNALNNFVRTLNLDIVFLQEVENDQLAIPGFNLVCNVDQERRGTAIALKQHIRFSHVERSLDGRLICLRVNETTTLCNIYAPSGTQHRAYRENFFNGTLAHYLRQATEYVILGGDFNSVIHTKDATGDNNYSLALKNATQQLQLLDAWDTLKPNRVEFTYVTYNSASRIDRFYVSSNLRPQLRDADVHVCSFTNHKALTTRICLPNLGREPGRGFWSIRPHILSADNIEEFQEKWTYWTRHRRNFTSWIQWWVSYVKPRIRSFFRWKSREKYMEFHQQHQELYAQLRRAYDAYYQDRTVLSTINRIKSEMLLLQRRFSDTFYRSNETRVAGEPISLFQLGERQRKRTTIEALDVEENTLNSSAEIEQHVFGYFRQLYAEEQPEIADEFACDRAVSAACPSNASCMDDITTDEIFQAIKSSAKNKSPGSDGIPLEFYAKTFDIIHRHLNLILNEALRGNIPPEFVDGTIVLVKKKGAGSTIKSYRPISLLNTDYKLLSRILKCRLDRVMRDNQILTTSQKRSNGDKNIFQATLSLKDKVAQLKERRLFGKLVSFDLDHAFDRVDRGFLMRTMRALGINPRLVELLDKIGRLSTSRVLVNGHLSPSFPIGRSVRQGDPLSMHLFVIYLHPLIKRLEQICVGSNDLVVAYADDVSIITTCAERIERVKEQFENFGRSAGAKLNVRKTISIDVGYINNNNRLAVPWLQTADKVKILGIVFVNSVRLMGKLNWVPLVGMLTRQLWLHRMRTLTLQQKVVLLNTFITSKLWYVASVLAITKADVARLTRLMGSFLWAGQCIRVPMQQLALPVELGGLNLHLPAFKCQALLVNRHLREIENLPFYNSFVSTTRNPPNLRIVPTNCPCLKTVCSELPYLPSALQANPSANLLHAHYLNKIDKPKVVLENPTANWNRIWRNIAAKHLTSFERCHYYLLVNRKLSNQRLLHRMQRADSDMCPNCNNEPEDIPHKISTCPRVAAAWTVLQRRLRNIAQNRNISLTHLLQPTLLAIRRSVKVKVLKTFIQFVIFVSKDNNVIDINELEFHLDTEV
>L1-4_DR_gag#LINE/L1-Tx1 171-1547 named DewaDr1 by Kojima and Fujiwara gi|34392574|dbj|BAC82618.1| gag-like protein [Danio rerio]
MDTLVKELELKMDYGSMDKATPENNNSRDSNNGIDDNDTWATVVARRRKTKSDTSREGSGEMQQTKGKANAEHLENSQQSSHRNEMINKLKSQARFQRQYKKETTLTMTVKDPENITVTMIIKAVEDKTGIGKLFGLRKKSNFDYELTMENETDCDHLMDGLMINQQFCEVSKLCATERMVSFLNLPNYIQDSEIIQKLVDWGVSPILPLRRRYHPGTTVADGTRFIRVKFPKEVMSLPYNVKFDTEEGPKYFRVIHDQQIKTCRLCGSAEHEKKDCPQFVCRECLEQGHFTRDCKAPRCQGCKKTILWCRCESDEEETGVMETNKQMEKSSNEEREEEVQELPPDDLNEQEEEQAMSEEDEGDTADTEAQDLMKDDGHDMEEEQGAAGENTESRIEEEVSDDDDNEEINIGTKDRTIDSINRRRRKTVQLNIQQVLKKQKLRKEAKAKLKTERTDLRF
>L1-4_DR_pol#LINE/L1-Tx1 named DewaDr1 by Kojima and Fujiwara gi|34392575|dbj|BAC82619.1| pol-like protein [Danio rerio]
MNNLCLVSINVRGLSSKVKFENVIALTKKCDVICIQETGWNENIVNDLKKCWDGEILYNNDPNKKKGMAILIRRGIGYTFDVLFKDNYGRILTIKIMNKDEEIRICNIHAPNEDLERVTFFKDLSVLMSGWNNVIVLGDFNTVLERIDVDDHMVFRADVGRRELKHMIEKHKYVDVWRERNRAKREYSRRQWVNTVLKQSRLDYVLCTRNVESFISNIFYKIFSCSDHDFLYVMMDFSGVERGPGVWVFNTELLKNDFYKIEMENIIINSVNDELYDEEISVWWDNVKLEAKRFSIECSKKMQKAKRAKERQLNKEWENEMEKITEGNMDIRRIVILEEKLKKLEEEKCMGARIRSKIKNTVEGERSTKFFYDLEKTRQKADLIKNVSTKEKTVKDKESILRTVKDFYETLFKAKGVHEEDKDFLLNQIKVKVSEEDKKLCDSDITEEEINEAITQLSNGKSPGLDGLSSEFYKTFKDVLIPILKDLFIAIFKKGQLSESMKKGMIKIIYKNKGDKDYLQNYRPLSMLNTDYKILAKILANRLKKVVPTLITTNQAYGVIGRDIADTVTSIRDLIWYIKEKKDEGFLFSIDLEKAFDRVEHSYLFDIIQKFGFGENFIKWIKCFYTDIFSCFKINGFLTDYMEISRSIRQGCPLSALLYTLVAEPLGLAINGEKKIKGFKIEINRTEQKIYQYADDTTLFLKDFKSVGKAMEIFDKYCRGSVAKVNKEKTEYMKMGKVDVQQGNWEYKEQKKYINILGITLGYDENKTREIIWDELINKMEKRLCFWKQRVLFLKGKVLVLNSLFLSKMWYVLSVVSLPTWVYKKLKTMILNFLWDDKPSKIAYNTIIGKVDEGGLRLIDPWIRIKSMRIKTLKKFLNEDNILWKSIMSYFINKCGQIRDDFLWMAFKDRMIENIPEFYEELLRTWKCFYNNIQTEIEGRKLYLQQPLFLNQNNKSKKQMFYENWYAVGFRQVKDILYEIKPGFLPTQAIIDTLEEIEDVDDKEKIEDQYKKLRLALPDHWIKTIEENEKETENRKIKVFFKKWMKIRLVSMIVLSRCFIHVCVTLCLKKPKSREFWEKLFENFDTSNIWKNVRSILKSPALENLDFMLRHNCIMTEIIFKKIGVSQDDLCKVCLEKKEGVLHLFLNCKKLSDFMKMLKTMVCNFLYDENIILEEWDTLFYLVLMGKQKISLLLIIC
>L1-4_HM_gag#LINE/L1-Tx1 108-1433   [Hydra magnipapillata]
MASCVNRRETVFFKTNDDALLPLMDNQRTEEISVILLEKMAKASAGESIEQVEISYSSDEPSDDEDEDKPKNKKQPKNYAEAAKPETKKRNLPKTLICEIEKHFTLNELLKAIEDENLDEELEGAQFLRRNTAIEIVMKTNEAKIKLLENGLYINNYHHVFKISNNNRRPKTEGKRLNQTHVSVFGLPIEAKLFDIGKHFEEIGYGRHVYTKPVMRTTPGKGTPYYSGILVAVMEDMPKPMPTSLNILGYKIRTKHNGQEINNLIERRQPCDTINENSSTIIHQQLTYERETSNSKPEEIPSNVTNEENINKITDTNKKTNNIIENEEKTNKEEEKKQPTKPKNETQHEKTKEEERKTLEKRRKEYYFDKPTTKEAEEQKIHTKDVEESKRAEDTNEKSREKMDEDNTWQKKRSAPPPTPYKNDRKKRMGTSKESTTLENG
>L1-4_HM_pol#LINE/L1-Tx1 1624-5487   [Hydra magnipapillata]
MDILTIFSVNVAGLINKQKQDTVLNNLKKLNYDFYLLQDTHLNKLQNDELSKKWKGSVFTSAGKTRTGGTAIITKHVLKPYEKFDDENGIFNYVLTKVSEQKILLLNVYAPSGHEFSQNRKKLFELIEDKIKHINLENVLVILAGDFNMVLNEIDRHPQIYRKKCASTEKFKKLINKLEVEDTWRLFNPNKQEFTYKATNNISYSRLDRIYLSKKARQNVEIQHEPMAHSDHYNACVASITLDKIEIGKSLWIFNNKHLKNKNYLDQIEILIKNKTSQNLDSKKETWENLKSELKEHAKKFCKQQAKNSRIEEYKLKKKFKNAIKKAHLNPRMQVLSADIKNKLKIFETNRAYGASIRAKIKWRTEGEKCSRAFFQLEKLKPAKQVTTKIKDKKNNIKSEKDEILKEFENYYKELYTSEKCDIKSQDILFSKTSPIQKIPKNLSKELELPITITEIKNALKTMQNNKSPGSDGLTIEFYKQNIYLFGELLAEAINETFTTGEMSESQKKAIIICLFKKGDKTDINNWRPISLLNTDYKIITKIIANRLKNVLPLIINENQTACVPRRSIYYNLSYTRDIIRICNKNQLDASIISIDQVKAFDRVDRNYLYDTLSFFGFNTVFINYIKTLYYDISAQIKINGFLSEKIEINRGVRQGCPLSMILYIIQAEIFSGYIRANKNIKGITVNQKETKIQQYADDTNFYLIGDESIKELGKALELNERATGAKLNVTKCQGLWLGKNKTKNKENFLKFNWEENTLKSLGIYFSNRDSLINIKQWNESISIIQKKIKRWQMFNLSFKGKRIIINQILLSNLWHLAFTLPIPNERIIKYIEKIVENFLWSNSSIKTNQKVSKLPINQGGLSIIDIGEKLKSIQLTWVAKIFNHTLTGAWKDAATHIFNSYRKTNQGENIFITTHSSSAIDTLPVFYQQLIKNWSHIFNGESDIKNMSIEEILNQPIFYNNFIRDKNHQTLKPKKETTLNQISKISDLAKVFVPGFLDYQLTGLKQTTFKKIKTSIPRVWKTKIKKECQSYDHNKSNFTLRNFIHPLKPVLITDLTSKSIYDFLMKKKYSLGVTTLFTRWNSVFEKSMTGTSSKEWSLLFQNIFKRNSNNKANEIKYKAIHFALPTNSIFKRRGHAPDDLCPQCMKDRETLSHMIYSCEKVQPLIKYTIFLLNKIYPSSKPFKNTFKFYLFGFVENAPKFYIGNLLLDELLYYVYTIRMRAYHERSMSARISLLKAYISKIKKILQIEHDIAKENNQLNSFLNETKEIRDINGNIKLENKLNQFLN
>L1-5_CQ_gag#LINE/L1-Tx1 138-911  [Culex quinquefasciatus]
MGRQNTIRIDYGDLPNKPGMPKVQKFCADKLGLKRGEVIRIQNSQTLGVTFVTVADLTLALKVCEEHGKAHELTGSDKKQHQVTITIEDGTVLVKLFDLSADVSNADVAKFLERYGEVRDVYEEQLGDDQEFAGAYTGIRVAKMVVRENIASWITINGEATKCEYYAQKATCKHCHDYLHVGVGCVQNKKLLVQKTFADAVKQPAKPQQPAMPQQPXNPQQPLNPQQPADXQQPLNPQQPSTRATAETKRREVEAKRR
>L1-5_CQ_pol#LINE/L1-Tx1 1199-4372  [Culex quinquefasciatus]
DFSSYNLATININNITNATKVDALRSFIRTLELDIVFLQEVENERLAIPGFNVICNVDHARRGTAIALKEHIEYTHVEKSLDGRLIALRVQNTTLCNVYAPSGTALRAERERFFNGTLAYYLRHNTDHIVLAGDFNCVLRPCDSTSSNPSAALQTAVQQIRLHDVWLKLHPNTHAPTYVVHNAESRLDRVYVSAGLCDQLRTAATHVCSFTDHKALTVRICLPHLGGERGRGFWSLRPHLLTQENKEEFAVRWQYWTRQRNRYRTALDWWISFAKPKIKSFFKWKSNEVYRVHHARHQQLYAELREAYDAYYQNPAMLTTIHRVKAQMLTLQREFSQNFARVNETRVAGESLSTFQLGERRRKKTTITRLKNARDEVLQTQPEIEQHVLQYFTELYAADPARAPDIDAGLGCERIIPVDDDANASLVEEITLEEIKLAIITSPKRKSPGGDGLTAEFLNWAFDVIYRELHAVMNELLVAPVPAEFSEGTIVLVKKSGRSAENISSYRPISLCNTDSRVFSRIMRQRLTRVLQAHNVLTDSQKCGERRSIFQATLALKDRIASLLARKVKGKLISFDLDHAFDRVSLPFLYRTMLSLGINPDFVSLLERHFSRAGSRILLNGFLSPRFDIKKSVRQGDPLSMVLFSLYMHPLLLALERICVGDLVVAYADDVSVVVTATETIEAINQLFGRFEIAAGARLNRQKTVAIDVGHVEGRPLVVPWLRTVEKVKVLGIFFANSIRLMIKLNWDAQVTKVAQLIWMHSMRSLTLQQKVILLNTFITSKVWYLASTLPPYQVHVAKLTATMGTYLFRGLPARIPMQQLARRREDGGLKLHLPAIKCKALCINRHLQEIDSLPYYKSFLDRAIPPPTSLPCLKLLCEQTPLLPAHIQNFPSSDRIHQHFLDGTERPRVETKQPNLNWRRLWKNISSRRLTSGERSALYLLVNEKTEHRRLMHVIQRADGPNCQHCAANEETLTHKFSECPRVAAAWAHTQRRLTAIDGGRQQFSFGELFRPVLNGIADGRRARXLKTFISYIVFVDXCATTAIDVAALDFELSLVG
>L1-5_DR_pol#LINE/L1-Tx1 1225-4926 named MutsuDr2 by Kojima and Fujiwara gi|34392569|dbj|BAC82615.1| pol-like protein [Danio rerio]
MRMCRFLISFLFILMVLNCVSFNARGLMGKDKFEKIREKCKNKEVIGLQETNWKEHAMNDFKKLWQGDIIYNNGDGKSGRGVAFLIRKDVLNFKRIVYRDNYGKCLVIEVNYEGHELIIANIHAPTEDKDKKEYFEVLNKVLKGFKEIIMMGDFNTVFRKQDMADGMVFKSDIGRKQLNELIKENSLIDIWRERNREKREFSRRQIVGNFICQTRIDFILCTRNIENFIENIQYEENSFSDHKLLHFKVNIENIQKGPGTWILNTTILKNQDYVQKVKEIIENEKENRMYDEDKRIWWENTKYQIRKYTIKYCAVLQRCKKYTEKEVKRSLEKELNKENKDIEKIKEIEQKLRDLEEDKYKGAMLRSRSKYTVEGEKCTKFFFDLEKQRGKAGILKEIKGRNGKIAKGNIEILEEIKHFYEDLFKAKGIDEEKERKILNYIKVKLEKHDNKECDREIEEEEIEIAINQLNKKKSPGIDGIGNEFYIVFKDILKGILKEVFKDIFKCKEMNERMGMGLMKLIYKRKGAKTELQNYRPITMLNTDLKILAKVLANRLKEVMSKLIKSNQAYAIKGRDIADVTMSIKSTIDYLQEKKMNGFLISVDFEKAFDRVEHTYLFDVLKTFGFGENFINWIKILYKGAFTKVKCNGFLTDCFKITRSIRQGCPLSALLYSLIAEPLGLAIKQETKIKGIKIEEEEDEGKIYQYADDTTIIVKEKKSVKEAMKKVQEFCKGTGSKINENKTQYMRFGKADILTDCFQFREVEELKILGILIGKNERKATEKMWDDLIRGIESRLNFWRMRELCLKGKALILNVLMTSKLWYKLYVTEMPCWIEARLKKCVQDFLWEGKPPRIAYNTIIGATEEGGIGLMDIKQRKNCLRVKIVKKLLQEENSTEWKKVMKYFLNKVGNFNLGEDILWLKTKNWMTEKLPGFYQEILSAWGKFLDGVFYQVKGRENLLNQPLFLNKSILKEGKELFFKKWMDVGILRIRDVLYEFKKGFLTKQYIVDLMEEAKEEYSVKEIENKLETVKGAIPKEWITRIENMEECGNEKVIHVYLKGKLCNFKDCLLKDFYVYFRDSVFQEPIANNFWVQRLNSVKKENIWKNMRGKIIETRLECFEYFIRHKAIFTECILTKIHIEQNATCKVCFQEDEGILHLFLYCKELECFYKKCQKMLKDLLKDWDEEQLEWNTLVMFGWNMQNKNKKFVNLLIMMIKKCVWERRNVAKQEKVVLNV
>L1-5_HM_gag#LINE/L1-Tx1 3-1137 based on L1-4_HM_gag (tfasty & estwise failed), 1 frameshift and 1 stopcodon   [Hydra magnipapillata]
LNIDGNHQRSYAQVTKPTISKQHLKQLNKTLLSEIQHQVNFEDVIIALEESGLDKEIEGVQLIRNDSIIEITLKNEKTKNKLLEMGLDIKGFHHRFNNSTPTRHASQRITVSVLGLPLEYKGFIVGALEKMGYGKHIYSRSVMKETPKNKTLYYSGILTAVMDKIKTPIPKTIEIEGHKVRIIYTGQENSLAMKNKTENNTCNTIIxESLTGAEKIIPKISLNKTIESIKTMEKEKEININITEAKENIXPKNKNLNYKTEKPNNHKKFAQNEDAFEEENVNLKSNEYEDMDEVEASFPETXQNQDMEEGESCVDTQEKGLKRKTTPQDIKIQTYKRSNKDFGIIYDGKCPETNQNNENNLDTQYQVNNNNILNHIEI
>L1-5_HM_pol#LINE/L1-Tx1 1315-4698 via tfasty with L1-1_HM_pol, 2 frameshifts.   [Hydra magnipapillata]
MAIKMLTLNVNGLNDDIKRHNIMMYLKNTCCDIACIQETHCSNEKEAQWKEEWSKKTQGFSIWNNGNNKERGVAILTKDRIQIDQITFNKSGRLLAANITIENCTLRIINVYGPNNPMEKEYFFEKLEKHIRPCDDLIILGDFNMVEDPILDREGGDQLNKNNMLGKKQLKRLCDTLDITDIYRKLNPQKKSFTYEKPDGSYRSRIDRIYAPTSQANFSTCKIIDHKLSDHKALYCKYKTKNLHSNKRGPGYWHLNVSLLSDETFEKNLIDRFEYSKHTKAQFENPNQWWDLTKLEIKNCAIERSTDIKHQRILYIKELEKKISIEKQNILYNKETIKNLKKELKLQKNDFGIFIRTKQTLVETGENPSKFLFNLEKSRSKKKTIETIRDGNITHHETDNIMRTIRKYYQKLYTKTDLNIVKQQDLLSNIKKKLNNEENQNLNKKLSSEELYEAAMSLQKGKTPGIDGIPVEFYQKYWHIYGNELTNLANNNLFNENGQLSWSQRTALISLIPKDGDKTLLQNWRPISLLCSDLKIISKAMALRLAKVLDKILTPTQTCSVPGRNIFSNIFLARDLIHYTNSKNLDAILISIDQEKAFDKIDRDYLLKVLQKYNLGKAFIQAIKTTMENTQSIILNNGFMSAPFKVSRGVRQGDPFSLMLYCIAVETLALEINKNTGIDGVPIPGSMKPLKVMQYADDTTIFVRNPSSIDVLFEILTNFEKATGSNINKEKTKALALGGFNYLAYEKYVQQGYYQNHKISWTNSTGLKILGVTFFTDLGYTASFNWQIALCKLENKLKTLKYRNISLKCKATLINTLALAKVWYVANVFPINKIIxKKIKKRISAYLWQSDYAEPVKREILNLPTDKGGLGILEPTNQCISLRTKHLFNLKEVEKPHEATFLLQYLIAIHLTKIATEKYAPWKFLTKNRFPKTINNLPFYLNDIINVLKKNENLLLLKHKTTKNIYLYLKNNNNNTWINRLQINWETKLQRTLPWNDIWKRSFNSYAQGPSQNTIWRLLQDSLPTTEKVKKWKKNRGRGQISCKSCNKTEDTLHPFIHCRKARSVWLAYKKLYERLIPDQPFNIVHTVFSLNIENLNKNDETAKIITTITHIITSELWRARNKYVKEN
>L1-6_CQ_gag#LINE/L1-Tx1 122-1132  [Culex quinquefasciatus]
MNEMRGYRKNTVVIDFGPVPKKPTITQIRKFAFEQLKLDITQIRNLQLSMTKSFVYIEMSPEINAEELVAEFDMKLTMTSEDGVQTPIPLHTADGATEVKIHDLPPYMPTQIIAQHLAEFGEILSITDELWKEHFPGVPTGTRIVRMRIRKPIPSYVNIGEEVGYVRYRNQRPTCRHCSRYLHVGQKCSDVKKAITGSVNSRLTLADIVSGVNPSTEEKQNTETLPAPPPLMPRPSLPIETLNEEQLLADEEAPAIPEVVPEQESKEDSTFPELDFAGDENYEISSDEDAKMQTEEXESEADSAEDXTAGKKRPARPKPQKKSKRLSGSKSKSGSSK
>L1-6_CQ_pol#LINE/L1-Tx1 2101-5264 via tfasty with L1-3_CQ_pol, 1 frameshift. [Culex quinquefasciatus]
VDLKSYNFVSININNITSQTKLDALASFMRAHEIDVFFLQEVENDTINIPGYTMLYNIDNRRRGVAIGLKSTVEHVTVEKSLDGRLIVVRLRNGTTLCNIYAPTGSQNRQSRENFFNCTCAHYLRNLSGPLILGGDFNSIVNDRDATGATPKSEMTSRLMTSLDLIDVWEGVHRNQTNYTFVRGGSGSRLDRFLVSKSTREHLRTIQHAVTCFSDHKAVIVRMVMPVAGTNIGRGVWRLNAATMDDEDTMAELQRKWDYLVRQRRNFTSWLIWWIEFAKPKLAAFFRWRSSIQNREYRDSMELLHGELARRYELYIDDASQLTRINHIKSLMLRMQRERSNKSRLLYDTYLQGEPTSTFHLAEKSQNRKSTYIHQLEIDGRIIQGPEVVQHAVDYFENLFSNNIVDFHSPDFVPTCSIPPNNERNEAIFEPVSEEEIIKYIKQSCSRKSPGEDGLPKEFYTKAWDIIKQEFTLIMNEALQAPDTTSKFMNGIVVLVKKKGTGKDMKAYRPITLLNFDYKVLTRIIKQRITPLVETVLSRHQKCSNGKHNIFEATTKILDKISALKFRGQPSMLVSFDMDHAFDRVNHSFLFRVMEQMNFNPRLINFLQKITRNSFSRILVNGNLSRPFQILRSVRQGDPLSMLLFVLYMQPLVDKIVSEGLAGDALNVYADDLSIFVPDGRRLTQLVNVIKAYEPVSGAVLNLAKTVALKIGNVDTNGIPPWLNFEDSCKILGLIFTDTVKKSMELTWQNILKQLKWRLWTCKSRVLNLIQKVIHINTFVSSKLWYAASTLPLPKKFETQILKEFRNFLWIGGKQHIRLETLSLPKSRGGLNLHSPGLKSTALITNRMLKNESELDLFRDMRYNTPFFQIPAAYPQIKTTVLEISTLSPRAIQQPSSFVIFQELMEGECDPAILETQREWRRIFKQLGDQKLDSTLRSNWYCAVHGKIQHNELLHRQNRRSSPNCDHCPRTVDTLEHRLFECRIVSPVWSYAKTKLNAISPNLRHKRNEYFLYPSFSRLSREHSIQTKLIVAKYLYFVCNNSIDNISVENFKFEL
>L1-7_CQ_pol#LINE/L1-Tx1 1-3129  [Culex quinquefasciatus]
NFIRTMGLDIVFLQEVYDDQLSIPGFNTITNIDHAKRGTAILLKQHIKYTHIERSLDSRILAVRIHESVTLCNVYAPSGTQHRAEREKLFNSTIAHYLRHNAHYTLLAGDFNAVIRSRDSTGSSNFSRSLANLTQQLRFVDVWATLRRNDDGFTYITHNSAARLDRLYVSVGMKEQLRTAEIHACSFTNHHALTVRLCLPSLGNDHGRGYWSLHPRLLDAETLDELRTKWTYWTRQRRHYTSWLNWWQGYVKHRLKAFFRWKSTESHLASQQQHQHLYSQLSSAYDEYQCNPAALSKINKIKGQMLSLQRKHSEAFFRNNETRVAGESLSTYHLGERTRKRTSIDQLQTDDHRTLENQTDIQNHVVSYFRDLYSAEERLPEQDFVCNRVVPCDSESNNSSMNEITTPEIYQAIKSSASRKAAGPDGIPKEFYLYAFDIIHRELNLIMNEALNGDFSADFVAGVVVLVKKKNTPNTVHGFRPISLLNYDYKLLARILKSRIDRILRSHGVLSSAQKCSNSERTIFQATLAIKDKIAKLNKEKKSAKLISFDLDHAFDRVDRSFLYTTMQDLGFKPSLIALLKRIGDLSSSRLLINGHLSESFAIERSVRQGDPLAMHLFVLFLHSLICKLEAVCSGDDDLIAVYADDISVVVSNNSKVDELRRLFQSFESCSGAKLNTNKTFAMDIGWCNQRNRWDIPWLQTTDQMKILGIIFTNSIRRMITINWDKLVGKFAQLLWLQKLRLLSLHQKIAVLNTFATSKLWYVSSILTINTAHIAKITSLMGSFLWDGAALRVPIHQLALPIETGGLKLQLPFFKCKALLVYRHLAERQSSPFYASYLASTLNPPNLSAIPSSLPCLKTVCQEFAYLPQRLRDSTQLSSSAVHGHLLCSAEKPKIMQQHPDLLWTRIWKNISAKELNTAEKTCLYLTVNQKISHQELLFRTNRAPSPNCEHCGFVGTLQHKLADCSRVSGAWALLQGKLQGITTINLPYEALARPELRRIGRRTRAAILKTFACYVIFIEKVNGLVDINALDFFLQTEVHLNC
>L1-7_HM_pol#LINE/L1-Tx1 672-4538   [Hydra magnipapillata]
MESIKISVNICGLNDKNKQNVVITKFQEMNYDIIMLQETHLSKNNADDFLLKWNQLGFFSIGERHSKGTLTLINQAKNNLKLIEHFADDSGNFNYVIIENQYHKYLIINLYASSGTSFKHERERKFLFKKITEKIKKLNYQNYVTILGGDFNMVLSDIDKYPSIFRKQCSSSEYLKALLNTLNVEDTWRIFNPQSLEYTYKSTNNITYSRLDRIYLSNHMRQYIDIYHEPMTHSDHHNAVHAHIKINNFKVGKDIWILNNNHLKNKSFKKSITNIINSHTTIINTSTYKNDEWDNFKTNIKIFSRKFSKDEAKNRRRKEFTMKKQLKNALKKAHLNPHMKNLSQNLKTNLENYEKKKAKGAAIRAKIDWRFQGEKCSKFFFHLEKEKTRKQLITNINDSNGNEHNNTPEIIKSFHDFYSKLYKESKNSVIHQTILLENTDIIKITEQQRQTLDQTITLTEVKAALQSMKSDKSPGSDGLTAEFYKENFDTLGETLLIVFNNIIKENELPNSLKQAIITCIYKKGNKSDIANWRPISLLNTDYKILTKIISNRLKHILPYIIKETQTACIHHRTIFESLSYTRDIIHIANEMKLDASIISIDQIKAFDRVDRTFLFDCLSAFSFSNSFINIIKTLYYDINSRLKINGFLSEEIKIHRGVRQGCPLSMSLYIIQAEIFAGYIRNNSQIKGITINNKETKLQQYADDTNFFLTTDDSIKALGEALALNKLATGTKINANKCQGIWLGKNRNGNKENYLNFSWKEHSFKCLGVVFSNTNFSHSKQWDECTNKIEKKIKSWKRFKLSFKGKRIVINQSLLSSIYHLAFTIPLPNDKKIKSIERLTEKYLWDNSTIKTKKEISKLSIEKGGLNIIDIQTKLKSIQLSWISKLFDQQYNGAWKDAASYILNNYREANQGNQVFFTSHSNDSLKTLPLFYSQMLKNWNSIYSQCDNVDKLSYEELLNQPLFYNPYIKHLNTSLKPTPNTEKNNITKIADISKVFVPGFLDYQLVDMKPRQISIIINSLPPQWKLRINTETQKYDHNKAIPYLYSKNNRPIPITELKPKVLYKILNTQKYDKTTVNLSKWKHYFKKSMSNITDEEWVKLFLTTXKNNTNNKADEIRYKLIHFKLPTNEIFKKRGYKINELCPQCMKTKENLPHMIYNCKKVQPLIKYSISLINKIYTQIPHLKNTFKTFLFAPSQILFLCNIGRIIINECLYKIYCNRQRSFHENKKFSRIALLVEFQNRIKKILNEEYQFARENDSLEAFLKEIKQIWCKRNKTLKLELDINRFLN
>L1-8_CQ_gag#LINE/L1-Tx1 146-1294  [Culex quinquefasciatus]
MTSVRPRENTFKVDLSVFPKRPSFEEIHSFVHDVMGLRIDQVKRLQMNHVQNAAHVKCDTLKTAQDAVEEHDGRHEIELNKVKYKVRLQMDDSTVEVKVHDLSENVRDEELIGFLRHYGDVHCIKELVWGENFAYKGISSGIRVVRMTLRKHIQSFVTVQQEKTLVTYRGQPQTCRHCSRLSHPGITCTDNKKLVGQKSDLSDRLKAAQSTDSTSYATVVDKGTAIINSLLPNFVATNLNQLNQAASESKQKELDTTAQQPSCSHLSTATDGVEQSSSSTITPAVAEDDSMSDETIVPVANETELMDQDLQQRGYDDSAQFDATSPVDVSGSPFKSPPLPLPIKQVHSSVSESDESSAEGSEFQKVKPRRGRGRPKKPRTDSV
>L1-8_CQ_pol#LINE/L1-Tx1 1383-4577  [Culex quinquefasciatus]
MNHPTMSYNICTINTNAIANNNKIESLRSFIRQTDADVVLLQEVENSNLTIPGFEVLTNVDDSKRGTAIAIKANIPYSNVQRSLDSRIITVKLGTSTTVCNIYAPSGTQNVSSRENLFKNSLPFYLQNSAEHLVLGGDFNSVIRNEDSTGTSNFSISFKTLVGNLDLHDTWSSLNRNQSAFSFVRSNAASRLDRIYVSSSLVSHLRVSEYLVTSFSDHKAFKVRCCLPDLRVLQGRGYWSIRSHILTNENVEEFGLRWNRWLRERRNYNSWVSWWIKCAKPKIRSFFKWKTNEKFRQFNANNEHLYRQLKEAYEGLLGNPSRREDINRIKSQMLQIQRNFSKVYERLNDQTIGGERISGFQLGERTRRKKTSFIKSIQHQNRQLTDPALIENHVFEYFKSLYSKQPVEPNVNFPSNRSIPAGSDSNDRLMDEITTSEIFFAVKSSASRKSPGCDGIPKEFYLKTFEIIHPQLNLILNEMLQGNISEELVEGVIVLCKKKTNESSIKSYRPISLLNFDYKLLSRILKQRLEKVMVENNLVNSEQKCSNSERIIFEAVQAIKDRIVEINCTNRAGRLISFDLDHAFDRVDRGFLLGVMRSMGFNERFLLLLERIMSASYSRLLVNGKLTQKFPIERSVRQGDPLSMHLFVLYLHPLLVKLLSLCNHPSDLVVAYADDISVIVRDDCILDTLKQAFVEFGECSGAVLNLHKTLGMNIGRNRSREIPPWPSMAESLKILGVTFFNSLKETTKHNWNELVRKTSRLMWLYKPRSLTLVQRVVVVNTFVTSRLWYLASVLSITNVMIARITSQIGYFIWAQYPHRIAMEQLALPVCKGGLNLHLPVHKCKALLVSRYIADREYTPFARNFEQQMSNPPNVMGIPALYPCLKVVAKLLPYIPTNLTANPSASTLHEYYRENLRVPKVMEENPNIDWNRVWRNTRSKALNSAERSTYYLLVNGKIPHAALMFRQNRAMNPNCEHCPNSIEDLDHKFATCSRVRHLWRHLRLKLGTILGRRIQIKNFLLPELKHCEVRSKQKALKTFINYVNFILDPKSSLSITALDFHLDCNV
>L1-9_CQ_gag#LINE/L1-Tx1 2-745  [Culex quinquefasciatus]
VIDNDLAQQIVDQHDGKHAIEHEGKSYPIRIVMEDGAVDVKLFDLSDEVSDDEIIEFLSDYGEVLSVRDLYWEDKYFFRAIPTGVRVVKMFVERNIDSYVSIGGLVTQVQYHGQQHTCRHCNEFXHNGISCVNNKKLMVQKTYADAAKQPKQVTKPTPKSTPRLPTGSQLNQVAGPSQPRLNDNIMLPPKDRLVFTKLTPQPQKSKGKGSKTDGNDTDTSSTSTRSLRSKSKKHKRDGAVSVDEGMVL
>L1-9_CQ_pol#LINE/L1-Tx1 751-3921 via tfasty with L1-3_CQ_pol, 1 stopcodon. [Culex quinquefasciatus]
MANYNSYNIATININTITNTTKIDALRTFTRTMNLDIICLQEVENEQLTLPGYNVICNVDHARRGTAIALKEHIRYSHVEKSLDGRLIALQINDTTLCNIYAPSGTAQRADRERFFNNTLAYYLRRRTSHTVLMGDFNCVLRQCDATGYNLSPALQTAVRQLQLFDVWEQLQPQAQGYTYISHNSASRLDRIYVTQGLRNQLRNSDTHVCSFTNHKAVTARICLPHLGHETGRGYWSLRPHLLTPENIAEFRNRWQYWTRQRRNFPSWMRWWLEFAKPQIKKFFRWKAKEAYDEFNGKHQRLYAQLRAAYDQYYQNPVALVAINRIKGEMLTLQRQFSQMCVRVNETYVAGEPLSMFQLGERRKKTTTITQLHAEQGELIDGSPAVEEHLHRYFSELYAEVHEEREAVDEFQCCQIIPNADPTNEACTREITTADILAAIKSSAPRKSPGPDGIPKEFYQWLFDVIHREINLVLNEALRGDFPPEFVEGVVVLVKKKGNSNTARSYRPISLLNVDYKIFSRMLKARLDDVMKLHGILSDGQKCSNAERNIFQATLxIKDRLAQLISRREKAKIISYDLDHAFDRVRTAFLHQTMRSLGFDRRFVDLLACIADRSTSRLLVNGHLSPAFPIQRSVRQGDPISMHLFVLYLHPLVSRLERVCGDDLLVAYADDISVISSSVEKIQRMGELFSNFEIVSGARLNMEKTVSIDVGLSDGAPLLVPGLRTEIKIKILGVIYTNSIRAMVKLNWDAAVSRFAQQVYLHSMRTLTLLQKVALLNTFITSRIWYLSSTLSPCAYHVAKITATMGTYLWKGLPARVAIQQLARSRDQGGLQLPALKSRALLVGRHLQETGSIPFYSSFIAQVNPNPPADCPCLKVILQNISLLPNQVQQNPSSSLIHSFFINQTETPRIVRLNPTADWSRIWTNISTRNISSAVRSDLYLLVNGKTEHRQLMHTIGRADGASCLHCGALAETLEHKFSTCPRVAAAWVHLKRVAAPILQRMRALTINDVLKPELHNIGPSRRRKFLQLINRYIHFIDTVNGRIDVNALDFHLNCEV
>L1-10_CQ#LINE/L1-Tx1 1082-4268 via tfasty with L1-3_CQ_pol, 2 frameshifts and 1 stopcodon. [Culex quinquefasciatus]
MMRCKMAQHSYNIATININTITNTTKINALRSFARTMELDIIFLQEVENEQLVLPGYNLVCNVDHARRGTAIALKDHIVFSHIEKSLDGRLITVRVHNTTLCCIYAPSGTALRAERERFFNNTLAYYLRHQTEHVIVSGDFNCVVRQCDATGNNYSPSLHTTIQQLHLQDVWVKLHPTSPGPTYITHNSQSRLDRIYVSPGLNEGLRTIAAHACSFTNHKAVTARLCLPILGRAPGRGFWSLRPHLLSREHLEELQLSWQFWTRQRRNFPSWMMWWLSFAKPKLKKFFCWKSKIIYDDYQRKHQRLYAELRAAYDGYYQNPRMLSRINRIKAQMLTMQREFTHMFVHINATHVAGEPLSTFQLGERRRKRTTITRVLNDRGEHIDGSREIEEHMVNHFRELYAVAEEAVDAEDRFECNRVIPAGDEASEACMSEITTAEIYSAIKASASKKSPGPDGLPKEFYLRAFDIIHRELNLVLNEALSSNFPPEFVDGIIVLVKKKNTDESARSYRPISLLNFDYKTLSRILKGRLENVMRAHNILSDGQKCSNSNRNIFQATLSLKDRIVQLKQHKKRAKLISFDLASAFDLVSRSFLFTTMRSLGFNTNLVDLLKRIGDLSSSRLLVNGNLSAAFPIQRSVRQGDPLSMHLFVLYLHPLLSRLQQVAGDDLVVAYADDVSVIATSTHKIEMMRETFDRFRTVSGAILNTRKTISIDVGFINGNPLHVPWLQTVDTVKILGVIFANCVRQMVQINWDTLVTKFGQQVWMHSMRSLTLHQKVTLLNTFITSKIWYLSSTIPPNAAHTAKITSTMGSFRWRRLPARIPIQQLARHIQKAGLKLQLPAMKCKALLINRHLNEIDCMPFYKSIVFPENLNATTSRCAxLKTLLQNLPRLPAQLQDRPSSDLIHQHYLELTDRPRVERNTPTADWQRIWRNIASKRLSSSQRSELYRFVNEKTEHRRLLHVMQRVDGGYCTHCNSPVETLQHKFRECNRVRAAWQLLQQKVAAVLNGWRRLTFEELLRPALRNIGPVIRNKILKLFVTYISFINNAEGRIDISGLEFAMITE
>L1-10_CQ_gag#LINE/L1-Tx1 121-1092  [Culex quinquefasciatus]
MARRINTFRIDYSMIPKKPSFEEVHEFIATVIGLKREEVERIQCSRTHGCAFVKTTDLAIAQRVVEENDNKHEIEVEDKIYKLRIVMEDGAVEVKLHDLPEDIQEQAIVDFLSAYGEVYGLRELMWGEKFAYDGFPSGIWVAKMKVKQNIPSYVVIDGELTALSYYGQKQTCKHCQDYAHNGISCVENKKLLVQKTYADAAKQVPSAKTSSTRESKQKKTKKPMQKSVFTKLTDSKKTPPGSSALALTPAVKPTAQLATTSKTDLTNMLPPKTTLVLAKKTVSEGYDTDTSTTSTNSKRSLRSGSGAKKVRPNDEDNDMGDDAL
>L1-15_DR_gag#LINE/L1-Tx1 210-1469 [Danio rerio]
MASSGDAVCESLTRRHGIKIMCKASVEDCILAVGEVVGCSSVVSASRMNNAVVLFLNTIEKTNEIVQKGVVINDELIPVLPLSSPSRKIIVSNIPPFVSDACIAKELSSFGKLVSPIRKIALGCKSPMLKHVMSFRRQVYMILKDNNDELNLSFNVKVDGFNYTIYATSESIMKCFGCGKIGHLIRSCTSGGETGQGDVQGESSAAASVAVDAAAPAADAAVSEERGGGGAVAPTMAEVVAGSSAVQTSINSKDDTSSQKATFSTAGTAKESTGEGIVEMEIEPEQIFKVPNKRKKVSENKMIKQAKKDKSKADYIISDNDADSSDSSSSVYSFSSQNESESQTQRYTAEGIKKFLRETKFLPNVEAEDYFEDVSAFVKDVKILTREGAFIDTEVYRLRKLVGKVKKKNLLNDEKPDLV
>L1-15_DR_pol#LINE/L1-Tx1 1444-5436 [Danio rerio]
MMKNQIWCNLFLVKVAVFLIVSFIFKTSFTMRVFNIGTLNLNGARDSQKRMCLFEFIKMKRLDVTFIQESHSDNLNEINWKKDWDGQIFMSHLAYNSGGVAVLFSKTVSPLSVETEEIVKGRFLKVKVKFEHATMVFLNIYAPNKGAERIIFLKKFCDVINNVDSEDLLFLGGDFNCTENDKMDRNHLEPHNASQKEMKNLVQVCDLCDVWRNVHLNDRQYTWVHSKDNQISMARLDRFYMFKFQINYVKDCRIIPVGFSDHCAVICKIFVNSVKVKSAYWHFNTSLLNDENFKEFFSVFWENFKKQKQMYSSLQQWWDCGKIQIKQLCKEYTFNVTKETMRAMKELEKSITELLNTTASTNNSTDFEESKTKKDLLADLLNVKAKGALIRSRFQNISEMDAPSKFFFNLEKKNGKSRLIHSLKSETGEDITDSSKIRKYAVNFYSSLYKCEVLQRDVENSVFFENLSKVDDESNAMLELPISQDELYTVMMSMENGKSPGIDGIPVDFYKVLWPVIGEDLFLVLNDSLNKGSLPLSCRRAVITLLPKKGDLQKIGNWRPVSLLCSDYKILSKALAVRLSKVLDQIIQPNQNYSIPNRSIFDNIFLIRDALEVAKLFGINCGLISLDQEKAFDRVEHEYLKKVLKVFGFSTHFIKMIEVMYSNIQSVLKINGGLSAPFDVQRGVRQGCAMSGMLYSIAIEPLLHRIRAELKGFSIPHCNAQVQLSAYADDVIVFITNTDDVRRLECIINNFKKISSAKVNWEKSEALLIGDWKRDPPLLPGGLKWKRGFLKYLGVYLGESDFVQQNWNGLLEKIQSRLQKWKWLLPQLSYRGRTLIINNLVSSSMWHKLACVDPPAGLLPKIQGELVNFFWDNLHWTPQSVLFLPRDEGGQGLVNLVSRGATYRLQFVQKLLYGPENLVWRPLAQCILRGINGLNLHASLFLTDNVHLDLTGIPSFYKSIFKVWGLFKHSQADSTTSLFWLLEEPVLLGSRLDVTKDDTPGLKELLISNKMTKLRDIVDKAGFGLRDAENVALYMGIRSVRFVTKFLNVLKSFLNEKEKILIEGYSQGIIFPNDQDCFPDIRLTPKIENSGINSPLLCFKENGNVDFSTVKGKVLYKNIVKLNNKCTLKERSDTVWRDKLCLVEEEKPEWRILYKPPLNKRSGDLQWRILHGAIAVNAFVTKINSSVSDQCPFCLERETIFHCFMYCKRLAPLFDLLNVLVSLLGFLFTKQCFILGFKYKRQNKYKCQLLNFIFGQAKSAIYITRKNEIEKRNGKNIVVVFKNLVKSRIIVDFNYYKMMKAINVFKIEWCCDDGLCSVINEELFFINELI
>L1-53_XT_gag#LINE/L1-Tx1 118-1257  [Xenopus tropicalis]
MASSADVRGVPASTEVRMKDSVKFTVEERFRAEKGLRFIGEKVLFGLCGLKKEEILCIQDFPKAGVYDVTFTSEVVCQNFHHSFVRLKDDPCFEGIHVSLLYAQETKLLFIHLYNPHVPIEDITQFLKRFCDSVKYVGKTTNELGVWNGRRKFVVVLKADENGPAGLLHPPANFMIGPHKGYLFYRDQPRFCRKCRCYGHVQDECKVEICRHCGSKDHVTAGCASEVFCTLCGKSGHVYRACPLSYANKAKAESNKKQDAGREVPASLVEAETSEVRVQRSSVRGSVSATADDSRSEEESGRVILWSETPPVEEVEVGVSRAKRIKSCGKPVNLSQKIDEFSSSEQSGAFSVEMECSPIVPAAQRPRSKPPDGSGSHDNG
>L1-53_XT_pol#LINE/L1-Tx1 1276-4665  [Xenopus tropicalis]
MVFSFKVGSLNVGSIKSPQRRAAFFDYVKLMDFHFICLQECNLNFMPNYDLLKTEWDLGPSVWSGGNDCKSSGIVVLFTSHDFRILSVHEIVPGRAVLVKVIFKGICFKIFNVYAPPDKEQRVDLFTTLNLFLPGSEPTFLVGDFNCVLPGEKRLGGDVNRNMDKSANVLSNMVLDQGFIDAWVKCNRGDPGFTWSNKTVNSRIDFIFVSCTLNPTKVNLVSNVFSDHKLLLFEVTYSGINNCQKSFWKLNASLLNDEQIVTRFKNKYAGWRKQKSPNETFVSWWEKTKPKIKEFFITCGKEKAKAKREVYANLNARLQVLYKLREVGIEVSDELNVVKNDVTKFLEHRGKEIIFNSRVKLLEENEKCTSFFFKKLKSVKENISCLNGETSIDGILKVATNFYTELFCEKSVDPGFLNDSLSNIECVLDDSDHDILSKVFTEKEILEVIKNAARGKTPGLDGIASEFYVVFWDILKEDLLSIYNECFYLDTLPMSWRQSVVVLIFKKGDRADIKNWRPISLLNTDYKIFAKLLTNRFKLVIDKLIHCNQVCGVPGRSAWDNLSLVRDILWYTKDRKQNLAILSLDFEKAYDRVSHTYLLAVLKKMGLPEIMLKQIKALYSQATTTVQINGHRTSEIPLLSGVKQGCPMSPILFICALEPLLCALRKDKVVKGVPVPGGGGAEIKTLSYMDDVTIFCKTPATIQRALLITRFFCQGSGFKLNLEKCDCFGIGNWETVECEVQIQKQSIKILGIIFDVKNDGQQNWEILLQKIQKKLQYWTLRGLSMEGKILIIKAILLPMMLYVAIVFPPSVLNMKRVVRLCFIFLWNSKMEKLSRTKVMKLKEKGGKNFPDIERFLYVKFFCFIYCSLKKCGFLSCFISYCAGAFFRKHDLYYFPLTIPVLLNVSSQYLLLGKIFNMYLLKDAPMDFLTDHRKLSNWIQSKEELISVGNASEAQSKRIWKNVSEVKMDNYQKDLAWSIVHNCVPTRSFQHSRGLVANKSCPRNNCISEETTLHVFWECFYAKCVWGKMSVFLSKAFNVNLFNMHDVFYGSFVCTDKKGKLCCWLIINCVKEALWKVRNILLFKRDCIAPEQCIELSMAKMYLYFLRDAKYRGKDKAERMWGFKLWNCIMS
>L1-54_XT_gag#LINE/L1-Tx1 184-1452  [Xenopus tropicalis]
MEKEENSAASPARFKNTVQIVLPEERRGSDGINIVMEEMIMRVGGFMPKDIFSLPEFPKRGLYEVVFHSTEDYRKFKRKYYANKNDHVFKDVEVKFLHSDTVRIVTVQMYNPYVPLADVVRHLKKDAEEVVFLKNIENRFGVWNGKRLFKVKFHESDLFDDGISHPQSNFRMGAERGFMFYSGMPKYCQRCNEFGHIPQDCESGIRMCGNCLEFGHITKDCKSEKKCSLCKELGHMYRECPERGMDYAGAVKGGKQPSVEAGGEERVAVQKEKKQAAELSTQVREIRSEQPQSLETEVEGEGKEEMAVEREESEVLQEESLSGVPYVGLTLGDEFCLSGLSVFERLSRDAEREDDERADNKRHKPDSDCGSLRVVEEMEDQEDTVSDISVEVVARRKVPVSGERLSQTPEMERYGGKSKDDVT
>L1-54_XT_pol#LINE/L1-Tx1 1455-4592  [Xenopus tropicalis]
MAGKLISLNVRSIKSKIRRAAIFDFLSSLGADFIALQECGLSNEEDCECAKNDWKGGISFWSGSTESKNSGVGFLFCKNIGDFVSFFVIEPGRAILVKVNYCGSIIRFVNVYAPVEKEDRAELLNKIYYFLPGVEPIIICGDFNCILKREDRKGQAGLDVTSGILKNLVSDFVLQDLWVLSKKQTEGFTFESNKCKSRIDFVFGSSEFMTKDFVLVANGFSDHKMLIVDFVLRDKNIKNKKRDWKLNADLLEDSDVVEGFKLKYAQWQKQKKKFSSVKVWWEWLKREAKNFFVNIGIKISKKKRREYNELNVKLQTMIRLRERGFDVAEEINDIKQKIKKWIENRGREIIFNARIRDIEEGEKCTRYFFKKILSKKVFIDKMENEECIEGILKKVYEFYNNLFAEKGCDVKIVEDFISLIEKRISVNDQEWVDREIDLEEVQAVIASCAKGKSPGCDGLTIEFYVKFWDILKNDFLEMIGEVFRTGELTLSQKKGVVTIIYKKGEKDKIKNYRPITLLNVDYKIIAKIFANRMKNVIAEIIGPGQVCAVPGRCIWENLYIVRDVLEDVMQRDQGIALLSLDFEKAYDRVNHDFMFTVLTRFGFSKGFINKLKVLYKNVTSEILVNGFKTEPIEVKSGVRQGCPLSPILFICSIEPLLLALQRDKIIKGVSVPGKTECIKSLGYMDDVVILCSNKESVNRVILWADIFNSAANFKLNIEKCECNVYGKWVDFENCKVKLERGNSRILGIVFSQNVSGELSWAEALEKIKKKLSMWKLRSLSIIGKVLIVKAVILPILLYVGLVFLPNYLWMRRFIREIFVFIWSSNMEKLKREIMYRELGNGGKGVPNVQQFLELKYIQFIIKLARQDKWASYFVKYGAGWILNRHRWFKTDIKKPYSFSGTRFYNVLDKIIKRWDLFKYSEVELVNINKICTDWRKQEAVCPVENFNSKISKEIWNMVVNKNLTNSQRDLAWALVHKCLPVKDFQYRRGLLRSPKCPREGCTENETCMHFIWNCKFAQRMWRDMGVVMKAITGLSYINYEVVMFGR
>L1-55_XT_gag#LINE/L1-Tx1 574-2064  [Xenopus tropicalis]
MAPTTAASRGKNSGKKTEKVSTGSRSAPPGTETPAQASALPPKATQSPNLEPWMRQTVVLKLREVEGKAPDMSTDVFGKKMVMEQGFSKAETVSIQTFIGGLFYITFASMAICRRYWERVKAAGPESPFTRFVGNSPIQREERRVTVAMRNPHTPVKDIITFLTRFCTVIRDPIQITDSNGFWTGKYSVLVKLQREESSADGLKHLPQSFSLGSSPGLIYYPDQPQTCRKCGQLGHQAKTCTANACRICKVLGHEAKDCPRSKACNLCGLASHVYRDCPQRSRTYASVAQAKPTPSAPANNRATPAAPAKTHNKGKTPAPAKVTPPAPAKTKNNEKKGKPPTAAPAPSPTPAPTFTPPSPLAAPLTSPPGAAGFSLEDFPPLTHPSHPLPSSPALCKKRTREAEDSPTAEQQEKKMAVADPGDTSSSEEDEGKVVEQATEDMELLLEELGQIPVKPEDVNRVLQLEEALLLQLESPEESPPPPDNAGGDPPDQSGNV
>L1-55_XT_pol#LINE/L1-Tx1 2109-5483  [Xenopus tropicalis]
MGSFNLFTINVRSIKDRTRRQNIFAFLDTQNCNVYMLQECAFPFSRSYKHLMRQWTHGPSYWSGGNSCKSAGVAILIRGSLFTVDSVLELVCGRLLVVDGSWAGEPVRLINVYASPEKGERLELFQTLRAQLATTRAVVLGGDFNCPIEEDGRSTSNGAKLDVTSKLLKEMVTEASLKDAVGSIGNGTVNYSWCRPDGSVRSRIDFVFTSRTIKQTRYAMVPCFFSDHRAIHFQGSLGCGFPPGQGSWKLNCELLGREEVMQELRDAYIWWRNEKCCYDNVSDWWEFVKVQLRSFFQVKGRRQACERRRNFKRLQRNLQSLQDLQRCGWDVRKDLEETKEGLKGHFAEESRRIIFRSKVEHLEKGEKCNSFFFRKLHSGHTPLTELRDETGTLKSGKEGVMEVVTDYYSSLYKEKETDETSAERFLAGITNLIDPAGLSATNAPLALEELHSAAKSFRRDRTPGSDGLPAELYVALWDLIGPDLLELYEEMAVEGKMPQSLREGMITILYKQKGERCDLKNWRPISLLNVDYKILAKVLANRLKTVIGQIVHPDQTCGIPGRRIADSLALIRDTVHYIKDRRVHAALVSLDQEKAFDRVSHVFMNKVLRRFGLGEMFCSYVSLMYRDIFSLVLVNGWKTDPFPVLSGVRQGCPLSPLLFVCCIELFAECIRRNPEIRGITAPGPARSQIKCSLYMDDVTVFCADQPSVRALVQTCEDFSKASGAKVNCGKSETLLFGDWNLASDNVPFSIKADFIKILGVWFGGEGAALKCWEERMAKVRQKIGLWSLRDLTIEGKTLVLRNEILPVLQYMAQAWPPLATVCRAITRAVFHFIWGSKMDRVKRSVMYKAPCKGGKGVPDIPTLLRSFFVCNCIRQTITGKEKDSVGSSMSRFFLLPLWRSLGWDKWDSSYPYNWNTPWFYLDVTKFVREHQLEGVKPDLWKPKTIHKLIRAKDKMESIPGLPEDTAKVVWGNVSSDSLTNKHKDMSWMAIQGGLPLRTFMHARNLCRYRHCPRCILYEETSLHTFWDCQFAQVLLDALEHELKDCVPRNLLTHHAVLYGLFQGTHTEGAIQEAWRLMNSFKDVLWYSRNCLILRRERMTIQDCRRLIHSLLRDYNIRDSLEEEED
>L1-56_XT_gag#LINE/L1-Tx1 181-1464  [Xenopus tropicalis]
MEDLFGTPSDLQTRYKNTAVVEIPEEHRGAAGLFFVVETLLKECEITPNDLFCLPEYYNRGIYELVFHETVKYHDFRKVFMEKQQHEKLSGCKVSFKHQDNVRMVTVSMYNTYVPTKEVLEYMKMIFEEAEYVKDVLNEYRIWTGKKLFRVKLRYDNSSEDGLDHPIQTISLRGNRGFLKYSGMPTFCWKCNDFGHMSNSCTVGLVCRVCAGMGHDDEECKIIPRCSICDVEGHHIMNCTKSSYASKVKKIPAGKENKNQVPQRSVRVEQNPVENEARPVVNQKLTILEGKKAKKMMTRGDKRKKRRTEGVFSDEESEIRNEEEGEEENAEEERIVEKEIVEEEKTVEKENVEEGSEGVVMEREEGEREEDQVEVVEEEEGVWTIDSMDLSVFSPVSESEFSARVDRGLSRLSATPDCFPEGSKNDPG
>L1-56_XT_pol#LINE/L1-Tx1 1577-4954  [Xenopus tropicalis]
MLIKCGSLNVRSIKNIGRRNGIFDFVATLNTDFFCMQECGIEFCKNYKLLSDSWKWGPSFFSGENNIKNSGIGLLIKGDSFVFESYFEIEPGRAFCVKGCFGGFKVKIMCVYGNTGKNDRIKLFEKISYFLVGSEPIIVLGDFNCIIEGKDRIGSNKLDKSSIVLKKLIKDFDLKDAWRLKHGDKSGFTWANKNSQSRIDFCFCSNEFQIHDFELIISGFSDHKILCVSMSAENITSTARRPWKLNYLLLEDARICELFENKYKFLKSMKETFVSKSVWWDWVKNECKLFFIRNGIKKKKKEWSHFKLLNSRLQGMLAFRELGYDFNKGIDDVKKDIKKWIERRGKEIIFNSRVKDFEENEKCSSFFFRCVKNKNNNQIVRLNGINDINYILDVVFNFYNNLLGKKEIIDKSFAEMFLNNLNRCLNLNEQKVLKGEITMFELEEAVKSFSKNKSPGLDGLTVEFYLKFWDFIKYDLCDLVNECFKKGELTQSQKEGLVTLIYKKEDKENIKNYRPITLLNVDYKIMAKVIANRFRKIINIVIEEGQNCAVPGRMIWENVILIRDMLYDVLDRDQGVSLFSLDFEKAFDSISHDFMFLVLEKMNLPIDFIKMIKILYNKVESKVLVNGFLTKKINIQSGVRQGCPLSPILFICIMEPLVQFFRRDKLIKGIKIPGGGGKEVKCLAYMDDVVVICRNSTSINRVCFITGCFKCISGLSLNLSKSTCCAYGNWNFDMFCKFKVIKSSVKILGITFNQSLSGEDDWAVVLSKIRKKLGFWKLRNLSIVGKVLIIKAVILSLLLYVSIVFLPSDLYMRKFIREIFVFIWGSKMEKIKREIMYKDTDNGGRGVPDLRFFLSLKHAAFIFRLLKKESIVSNFIKYSGGWFFNKYKWLGIDLNKPRAFKISRFYVILEKIVRKYNLNTFDFTELVNAKQIVKSFKKNELIYPVEKFNAKISKNIWNMVLNKNLTNSQKDLAWAVVHDCLPVRNFQYLRGLLNSPKCPRNGCVYDETVMHVFWNCSFSRMVWEKMRGFLKYVGELEFLGYEQVFFGLNLKCKNGDAIKAWQIINVTKEAIWKCRNILVLRRDELTVTDCIKFALSNLYILYLVDKKKFGMSAMNEWKVKDWYKFS
>L1-N1_CQ_gag#LINE/L1-Tx1 110-1012  [Culex quinquefasciatus]
MSAVRKNTLVVDFSVLPERPKLDMVQRFVEKSLGLNPTDLRSIQLHNIRHCVLIQMADPAAAVEVAVQHHLKHAFRISPTKKIAIPVYVDDDIVDVRIHDLPPDMSNMQIAEAMLQYGEVLTIRDEVWRDIFAGVPNGVRVLKMKISKPVPSYVTICGLSSLATHTGQISTCRRCGFQRHVSKSCSEAAKKQQPKPKPQKNPSPSGPVLPIADLAAVQSQVVVPHTHEDNGNDGFITVVKKGKTKRQLEEKQAPEEKRSCLDDDDDDKSPTLDNDQRNDNGHLIGLPTTTTPKRRVWKQTV
>L1-N2_CQ_gag#LINE/L1-Tx1 146-1204  [Culex quinquefasciatus]
MTTLRPRENTFKVDLSVFPKRPSFEEIHSFVHDTLGLRIDQVKRLQMNHVQNAAHVKCDTLKTAQDAVDQHNERHEIEVNKVKYKVRLQMDDSSVEVKIHDLSENVRNEDIVAFLRQYGDVHCIKDLVWGDSFAFKGVSSGIRVAKMTLKKDIKSFVTIQLEQTLITYRGQPRTCRHCGRTSHPGMTCTDNKKLEGQKNALDERLKSAQSTSSSYAIVVDKGTDKPNDVPTPSAPQTPLCPISSRVTDEVEQFFTLAQTESSSPTLVEDVQMEAEDDPIVKDQCTQQTPEDGQPEDNVTDSVSMFKVPALPLSTTTVQSGISETDESSSDGSGFQGVKPKKPRGRPKKLKSKT
>L1-N3_CQ_gag#LINE/L1-Tx1 157-1224  [Culex quinquefasciatus]
MSQVQTRENTFKVLLSNFPKRPTFEELHKFVHVNLALRPEQVKRLQINHAQNCAHVKCSELKIAQDIVAMHNEKHELVINKTKVKVRLMMEDGGVEVKIHDLSENVTDDEIVAFLRHYGDVLSIQETVWGEKFAFRGVSSGIRIAKMVLRRHIKSFVTIRNELTLVTYTGQPATCRHCTLTQHIGMSCVENKKLLGQKAXLSERLKSAQTTAPQSYAGVVNEGTSTTVLQTQTAPPQTNPIDCISISGTDTATILPNHSTXVTNELSGIGTGDDNEHQIENSRNEESNDEEMPVSLTPANMILENNFKVPFPIRDPKTSPSLDTISESESDISPGGSAPNSGRRGPGRPKKKKTRH
>L1-N4_CQ_gag#LINE/L1-Tx1 161-1279  [Culex quinquefasciatus]
MSHVRTRENTFKVILSNFPKRPKFEEIHKFIHVNLALTPDQVKRLQFSHAENCAYVKCSELKIAQETVAKHNGQHVIESNNAKVKVRLVMVDGGVEVKLHDLSENVTNEEIVAFLQHYGDVLSIKETSWGSNYTFHGVSSGIRVAKMILRRHIKSFVTIQNESTLISYKNQPETCRHCTLIQHIGMSCVDNKKLVGQKTALNQRMSNTQPTPSTSYASVVNSGSSTNTLQIKVVPDNPKIESLSNSESVAKAIVIGNSAQTTVVPSELGTSSSILNISPPAGTEGATVQALRKDADAAGSSALIGRTDDDEMPIAVFTATSSVDGTFKVPHPFLEPKPHQPMDASSGSDSDHSGSSESKKRKPGRSKKPKLDK
>L1-N5_CQ_gag#LINE/L1-Tx1 81-977  [Culex quinquefasciatus]
MSSTRKNTIFVDFGVLPARPPLDSIKTFVEKSMGLNPAGFKCLQLHNTRNGILIEMADLATATKVAADNHMKHALRSGEKNFLIPVYVDDNAVDVRVHDLPPGMPNDDIADGMAQYGEVLTITDDVWKNFFPGIPNGVRVLRMKLXKXVPSYVSIKGQLSLATHAGQIPTCRRCGQKSHPEKTCSSAKAKKKTVNANQKNDKPTTTNTIVPAATTTTVSDPISKVTDDDGFRTVEKKRKSVKRQLSIESKTTPQEKRTQINFDSETEMDEQTLKQISKEDSAKLRTDNFMKWCELMYMQ
>L1-N6_CQ_gag#LINE/L1-Tx1 98-1006  [Culex quinquefasciatus]
MSKYRRNAVVIDYNVLPVRPDIESVSKFISNDLQLDLKRVKNLQLNNSRNHVIIELGSPEEASDLAERHNLKHKVGCRGKLFRIPIFLEDNSIQVRVHDLPPHMPNEIIATHLEAYGEVNSIRREVWREYFPGIPNGVRVVRMVLEKPIPSFIKVEEEVGYILYNQQVKTCRHCAKPLHHGKKCDENLALTPTTTTTTTTPAAQLLAPTLPALSPPVSTPSATAIEKEIAPEKTLPEIAPPTTTTFLPSTSVKNHQTTPSDQTMDISPEDDDDNETAKTVKPKRRSRRKKPWDPHWNHLYDDW
>L1-Tx1-1_DR_gag#LINE/L1-Tx1 8-1177 via tfasty with 34850481_Dre_gag, 2 stopcodons. [Danio rerio]
MASLVDERTPSLSLRHGVKCMTEQGVKVEDVLIAVGEQIGCENIVSASRMNKAVVVFPKEELFVSQLIESGVIISGSFCPVLPLVALTSKVIISNVPPFIPDEAIERELVRFGKIASPIKVISLGCKSPELKHVMSFXRQVFMFLNEPTLDISFRVMNEGKSFMIYASTAGLKCYECGDFGHRQYFCPHKVQGNTNDDNGDVNELEGEKNQVKXTETETTIENDVVGKQQNEGNAIQRNVMNDENQATVVQEVVDENDLSSETVTASASGLVKLNEKMEGPVEGLLEDEHKQDMMDDDDTFSQTSDFSEMGSQMEDSNFYSLQEINEFLDDTFGRTVEVEDFFPDTDKFVKTVLRLRRTVGLDELSDKKRFRLGKFLTRIRKHKGSFSRK
>L1-Tx1-1_DR_pol#LINE/L1-Tx1 1185-5094 via tfasty with 34392563_Dre, 3 frameshifts and 3 stopcodons. [Danio rerio]
MSLKHWVFFLSYFFLILVYFSSIIMGLMKIGSFNINGARDQNKRAILSEFLRMNXIDIIMLQEIHSDKANEIDWGLWWEGKYVLSHGSNLSAGVGVLFSKFLNVDIFKTEEVVAGRVLFVHAQVEGMEFLFINVYSPNVGSERIELFLNIKSQISKYDNNVCIIMAGDWNCTENVKVDRNGEEPHFQSGYVLSKVIKEHNLIDVWRIRNKGIKQYTWVKVNNTEIKGARLDRFYICKSFNSRVVNAAIVPSGFSDHHMVTIDINKKITARTQYYWHFNKKLLYNKLFCETLWRLEKNNYETKCQWWEVEKAHIKVLCQSYESQISFKVRDAVKKLQCEIGEIEKIMLDNEEGTDKSEKIHKKKLELKQILQEQVKNALIRSRFCTVKDMDAPSSYFFKLERKVVQHNPMLHLSYPNGKITDNPNEMKKIAVDFYSELFSAEQCDEECMMDLFEDLAKLQTKQRENLDSDISLQELTDALQQLSLGCSPRIDGITTEFYHHFWNILGQDFYEVAKECFENGLLPSSCRRAVLSLLPKKGDLAFLKNWRPVSLLCDYKILAKCLANRLKCYLEIIIHGDQTYCVPERSIMDNLFLLRDVIHLSIKKNINMGILALDQEKAFERADHSYLFSVLSCFGEKFISWIKLLYHDVSTLVKVGGGLSASIPVRRGIRQGCPLSGQLYSIVIEPLLRRIRKKLNGFSIPNYINCDKIVLSAYADDITVFIHGEDDVNNLKNIIEXYEKASTAKVNWNKSEAYAVGRWINKRLPDLPGGLKWGREGLKILGVFLGSSNFMEKNWEGLLEKVVARLSRWKWLLPQMSYKGRVLVINNLVASTLWHRMMVLEPPQELVVSIQKKLVDFFWTGQHWIRAAQLYLPNCEGGQGLIDIKSKIQAFRLISAXKLLCKSKLSWTHTACAILRTVKGLNYDLHIFWIQTDEMDLTGITSFYKSVLQAWNKTFKIQRIFDIPKYWVLEKPLFHNPVVHGTLISSRSVQNNMIKRNCTKLKHLVKVDGWKSIEDIMVFTGLRSHRLATRFLEEIHSFLPGQYRAILQEEDSSEEVKILPLVVSSSCEFGGFEEETGISKTWTVDGMSKEVLYILCVKNVHKDILKGQLLKWTKKFGPNFPLRDQWRSLYKSPLEKRIGDLQWRLVHGAIATNSHVSHLNPIVRRECAFCGKEENVEHLFLSCTRLKDLFNVLKYWFRGFGETFSECIFIGGVKYRMSKKILFTLLNYVIGTAKLSIWKTRKNKISGVGGIDPVNMLKGLISNRLKIEFTFYELVRDLITFEEKWCLGSILCSVYEEQLVLNL
>TX1_FR1_gag#LINE/L1-Tx1 230-1637 via tfasty with 34392549_Tru_gag, 2 frameshifts and 4 stopcodons.  [Takifugu]
MVVGGGSGDLSRLTRRHGVKVGARSLYTVEEVALAVGEVIGHGSVKSAARMNGAVVVLFVEKVEQVNRLVEAGISVGGRFEAVLPLSQPATKVTLSNVPPFITDEFLCRELSRHGKIVSPMRKVMSGCKSXLLKHVVSHRRQVYMILNNRDEDLNVCFKVRVDDFDYVLFASSAHMKCFGCGEAGHLIKMCPHAAKSAASGSGERPGAAAAEPRTAEPGAAAERXVAGAEGPGVDGATAPVGSDGSTGEGEQVGEKGEVSVQDGETGVCVQEGETGGVCVEVGDTGGACVQGGEAGEVSVSGGVSEQGEAGLQVGEVGEEGGAGLxWSSxSCGADGAGSRLVSSSIEAPQQQQAWSCQSxKKQTDRxTDRRKKEEPDSSDSEGCVSDDGDLXQKNLGSQEXKSYPPKMFKXFLQETKNMKGVNIEHYFPDKQQFYLSARRHXKNKAEAGFTDQEVFRLKKLILKVRREXL
>TX1_FR1_pol#LINE/L1-Tx1 1723-5621 via tfasty with 34392553_Tni, 2 frameshifts.  [Takifugu]
MSSFKIGSLNINGGREEKKRVLVXETMILKKINVMFLQETHSDVXNEADWCRRWEGRVFLSHGTALSAGVGILFSKSFNPTSFTVDHVVQGRCLLITAQFDQFSAAFINVYAPNSGAERKLFLETLGNKLQXCGSVDYLFLGGDFNCTEDEVLDRNHAEPHPSSQQVLRQLVYSHGLVDVWRRTHTGCRQYTWSHIRXDRVSLARLDRFYCFKHNFNVFKSCNIVPVGFTDHALVLCAVFISNILPRSAYWHFNSVLASDVSFKDALSYFWAGFRQRKGEFSCLKQWWDYGKTQIRMLCQQHTLNVTRHVTGSIRDLETEXVELERLNESTGNGGSVGILKTKKMALANLLGARAQGALVRSRIQDISEMDAPSSFFFGLERKSGQRKXIHSLLSDTGQELTDPGQIRRRAVEFYTSXYKTDFKDGEDCFSGFSVFSQGLPRVSKETNHRMERPLTAQELHAALQTMQGRKAPGIDGLSVEFYKAFWDILAQDVLEVFNESLATGSLPLSCRRAVITLLPKKGNLQDIKNWRPVSXLCTDYKILSKALAIRLREAMEQVIHQDQTYCVPGRSMVDNVCLIRDVLEVSSSSGVSVGLLSLDQEKAFDRVEHNFLWRTMERFGFSAGLIAKIQVLYSNIESVLKVNGSLCAPFRVCRGVRQGCALSGMLYALSLEPLLHKLRXCVQGLFLPGFNSNVVLSAYADDVVVFIKDQADIDAVLNVXNKFCDVSSARVNWGKSEALVVSEWRQGLPVLPXGLTWRRDGLRYLGVYLGNERMVRKNWENVVEKVEEKLKKWRWXHXEMXFRGRVLVXNNXVASLLWHRLACLEPPPGLLSQIQAKLVNFFWGGYHWVPQSVLFLSRDQGGQGLIHLASRTATFRLRFVQRYLTGPPDLVWRDVASCLLRRVSNLGLDAALFLTDFKSLNLRGLPXFYRSVFKSCALFKWKKIQESSSLHWLLKEPLVHGGRLDVCSSAMPGLMGALCGSRTVXLKQLVEAAGPALADARTLSXVLGLRSLRLVERSLELWRRRLSVRERSLLLRYGGGRAEXDPTDAFPDLQLSPGCEEFSGPLLNAXCKSKLGLHGTDKXTFYLNIVKTINGLGLLDRAASVWTDRLGGQSPQWRTLYKPPIKKRTGDXQWRILHGAIATNAFISVLNPAVSXXCPFCGLSETVFHVFTECSRLAGVFSVLXEVFNRFNXXFSVRAFICXXXYKKAAQQKWQLXNFIRGEAKMAIYISRKNKIXKNGDCEAASVWRXNVRCRLRLEFGFYKMMNDLSRFREIWCYNDVLCTVKEDNLQFAQPLVG
>TX1_FR2_pol#LINE/L1-Tx1 2-988  [Takifugu]
AAPRLKAALRRTRTXXLQHVVAAAGPDLTGAEAVGSLLGIRSAQAAEGVLRLWRNRLSARERRLLXDYGQGTEPDGDDPFPEIRLAAHLGDLDGPLLRPXKTFSLHAVXKKTLYXNCVRVLNRRGLSNRSTSVWADRLGGDGARPCWRVLYKPPLKKRTGDLQWRILHGAVALNALLSRMNTAVSDQCPFCSGRETVFHAYSECERLTVLFNVMKGVFNGFNETFSIRTFIFGAGYNKAARNKWQLLNFICGEAKMAIYISRKNKXAKTGDXEAASVWRCNVRCRLRLEFGFYKMINDLGQFRDIWCHKNVLCTVTEDHLHFAHPLVG
>TX1_gag#LINE/L1-Tx1 758-3085  [Xenopus subgenus]
MGGNKKESYKKTSLGSKAKGPEKPSCSSARKHQSEPMSKSPIASTSAAAANVTPAKTFAHAVATGSNPGQVTAGVEKLTRKHGVRCLMSSTHGIEAYIKAAAEVVGHSAVVAASKMYGKAIIFARTLTAVHTLVQRGITVGGSYVPVEPLEGLGTRVVLSNVPPFLQDHLLYPHLQALGELKSNMSRIPLGCKESRLRHVLSFKRQVQLLLPRGQDTIEGSFGVPFEGVLYKIFYSTEEVRCFLCKNLGHTRQSCPKGQIKTTAPVPAPSASNKTSYPAGTISAGSSKGISPSLKNLKVAVTQPTSTTSKPPPSSLKTSKAAACLTIAAKEKGGKHVKASPRVTVVPITKKCTPVMGTPEGVGVPMIATSVGVGADSGLSSSDAKKKRKFKSNWLVPEEWASVVNDGAPPSKGKKGSKTSAPHVVTLSGPTVGHDQPVSDHALLPPDQVGNNEVNGLHGLEHGSVGFPTESGVQYLPQNHLEDLPLECKETPNETPAEWAVSVPEVLRFGNCNQPQFLVPQGISLQEGENIGLTPIQDPADKTAGKDGEGGVVDTEEGSQTTSTVHAKISLPLSSTDPNVIAIQKAQEVVERAEANHRASKALPVAGELISSVAPVSNTSKCVSSEVEGTPEPLQGLQKSDSDTFPATTCGEILKALVERGDYQSLSQEELMDEGNIEEEVDIGVANPSTPIIPAEELKKFLESTLGVKLEKKMHMALEKWHDLPLVINSVRQYIKVIKEAKNYGTAEYLRIMKFHKKCLSHQTLMKVKALPKTQ
>TX1_pol#LINE/L1-Tx1 3085-7011  gi|104220|pir||B32494 transposable element Txlc protein 2 - African clawed frog [Xenopus subgenus]
MALSISTLNTNGCRNPFRMFQVLSFLRQGGYSVSFLQETHTTPELEASWNLEWKGRVFFNHLTWTSCGVVTLFSDSFQPEVLSATSVIPGRLLHLRVRESGRTYNLMNVYAPTTGPERARFFESLSAYMETIDSDEALIIGGDFNYTLDARDRNVPKKRDSSESVLRELIAHFSLVDVWREQNPETVAFTYVRVRDGHVSQSRIDRIYISSHLMSRAQSSTIRLAPFSDHNCVSLRMSIAPSLPKAAYWHFNNSLLEDEGFAKSVRDTWRGWRAFQDEFATLNQWWDVGKVHLKLLCQEYTKSVSGQRNAEIEALNGEVLDLEQRLSGSEDQALQCEYLERKEALRNMEQRQARGAFVRSRMQLLCDMDRGSRFFYALEKKKGNRKQITCLFAEDGTPLEDPEAIRDRARSFYQNLFSPDPISPDACEELWDGLPVVSERRKERLETPITLDELSQALRLMPHNKSPGLDGLTIEFFQFFWDTLGPDFHRVLTEAFKKGELPLSCRRAVLSLLPKKGDLRLIKNWRPVSLLSTDYKIVAKAISLRLKSVLAEVIHPDQSYTVPGRTIFDNVFLIRDLLHFARRTGLSLAFLSLDQEKAFDRVDHQYLIGTLQAYSFGPQFVGYLKTMYASAECLVKINWSLTAPLAFGRGVRQGCPLSGQLYSLAIEPFLCLLRKRLTGLVLKEPDMRVVLSAYADDVILVAQDLVDLERAQECQEVYAAASSARINWSKSSGLLEGSLKVDFLPPAFRDISWESKIIKYLGVYLSAEEYPVSQNFIELEECVLTRLGKWKGFAKVLSMRGRALVINQLVASQIWYRLICLSPTQEFIAKIQRRLLDFLWIGKHWVSAGVSSLPLKEGGQGVVCIRSQVHTFRLQQIQRYLYADPSPQWCTLASSFYRQVRNMGYDRQLFIIEPEGFLRNLSTLPAYYQDTLKTWSMVSVLRQGATEGEDILNEPLLYNPSFKTRMLESISIRRRLCQAQLTRVGDLLDFEKSDWVDSQAVMQRMGFLTTRVPHRLLKEIKDTISPDSHTFIDGVLHAGEPRPPWNSSPPDIIIAPKTRQSPQAPPSPNLSQLENFPLTRFHDITRKLLYSLMLHTVHFLALISRYDTIWRRVLNEGERPQWRAFYSSLVPRPTGDLSWKVLHGALSTGEYLARFTDSPAACPFCGKGESVFHAYFTCARLQPLLALLRKLYLQFWLHFSPHVYIFGRPVSRDNKEKDLLSNLLLALAKLVIHKSRKQCLEGGNPLPAEVLFRVLVRSRIRAEYTQAVFTGRLKEFADQWAIDGVLCSVSPDLVSVQTILTLPYLSAL
>Tx1-1_BF_gag#LINE/L1-Tx1 241-1452  [Branchiostoma floridae]
MAARDDISRLQDTNLWIKIDAVGMPKLSEFDIVEALYNTVQNELDDSIKPEEILGAQYLSQKRTWVINFTCLDAKAKAISVGRVVVGSKSYGILDFQKTGLRKTEIRISIHGIPHSVSDDEVAQWVDSRAERTTEVLRHQKKNRNADSPFQHLYSGHRFCYASKITNPFQRYGTYSIPDPTDTGSLIDIEVTVFHDGQHINCKSCKSEDHAFHECPHRITCHNCGKKGHTKKWCRAERSNPSRERRDVEQKVQQGLRAAREASNSRSTSASRAVVNNKNSGEDQDWTDWASGDPDETAESLVTGDSDGAENTRCETESIANPPHQEQAGLSGGTNQRRLTRSTRPAPTSTEDTRDQGQRRQPGTSRSTRKRKNVLTPPDKSKPDKLYKDDGRHNDQRRNKDNG
>Tx1-1_BF_pol#LINE/L1-Tx1 1805-5539  [Branchiostoma floridae]
MVRFLSINVRGLRKRSVRRTVFQYLKTKQIDIVCLQETYITNDVKDAWTKEWGGKLYAHPCTSHSKGQIILIAENFDCNNVEFINLSDRSIGVKFIHHGEKFVCFNVYAPNNVVSKKLFYKQVLTQLQEHCCDGEYFMLAGDFNTVLNRDLDNVAGKEHDKAEVKCFNNLTDNLELLDIWRVFHSEDKDYTWSKRNPFTARRLDYLLINDFLFDKTTACEIISFPCSDHRAVVLDMSVTQFDKGPSYWKFNNSFLKDKVFVDRVNEIIGNIQEGLSDSVIEDKQLIWDICKSKIKTFSISYGKQKALEKRSKHNIIDEKLERLEKQLASDPKNLTLQQQVHNTKAEFEALALHEAHGAQIRSKVKWIEEGEKNTAYFLRLEKSRAIHNVITSLRTPDGHIITDQNKLLEQQVDYYRKLYSKNDDFDIESFDDFITDVNFPTLSDMQSKSCEGLFTMTECTSALRNMTNCSPGLDGLTTDFYKVFWSRIGSMVLNSLNEGYTKNQLSSTQRKGVISLLFKGGEHQDLSRDQLSNWRPISITNTDYKIGAKILANRLQNIISHIVGPDQVGYIKGRSILNNIRAIDDIICFTRDSNVPGAILFLDYSKAFDTISKDLIIKVLEKFNFGSDFVQWVKVYTNNARSCINHCGHISEWFDLGRGVRQGCPLSSLLFILATELFALKVRQSSEIKGITLSGLGDSDVESRIFQYADDTELILGDKISIDRSLDIIRHFSVFSGLVLNKEKTVAMWLGPWRHCSEQASGLKWCTTAKCLGIVFSSACCASEVEVNWSKKYCKMKNILLSWASRNLSLIGKITVLKNLVASQLSYSFGALIPPDSFLKDVNLMFYRFIWKRDRVKRNVMVQDYSKGGLKMIDIRIMHKCCLLRSIKKLLSGSETPTPTWKKIQLYYFKKLGPDLCILRHNCSAVHVSSKDSLLPLPLYYRKLILTWYEMKPVQNVNDIEVNQVNWQLLWNNACISYKGNMLYFKKWIRRHILYVNDIVDDQGNFISFDDVKAIVGNDAHVLLQYHALINSIPKQWKGVSRLDNEESPSIKLCGKDIRLLDSIFFKNFCIMQYQAVPVSQNFWEKRFPMYDFRSISWHVLWKSPFLTTKEPKLISLQWKILHNIYPTKILLHKMRIVENNKCIFCDIIEYIEHFFFDCKIVKPLWDYVESLFSYSISLTVHDIIFGYNPHMLNKFRYINELLLVAKLSIVKYKSTVSSPNSLCQDAEIILKIFKSECILRNMI
>Tx1-1_CQ_gag#LINE/L1-Tx1 143-1387 [Culex quinquefasciatus]
METRKNTLKILFATGAKVPSYLEVLKFMSTGVKIPATDVHSVYKDENDQKFYIKFMDENSYNRFCNSVEDQYWFRFDDGSRSPVQLELASRQFKYIRLFNLPPETEEKEIAMALSKFGKIRQHVREKYPQDLGYHVFSGIRGVYMEVEKEIPANMYIAHFRARVYYDGLKNRCFFCKAEGHMKVECPKLASLRVNAETGGQRSYSSVTANLAIANSSTIEPDNTLTMTTLPLTSPPARPKMPMQPQEGDGASSAKISTPANNPFVTLTPAEVPMETPVPRPEETTNNQASAATTTERPEETTNNQASAATTTETPNKPVDATATVATPKETSAAEAERSGHDGMIIDGEQLMVDEAIKGTAEGEGKLELKKRPIETSLSLGSNDSDLGQGKGSNSKKKRGAQGQGKGKGKGRGK
>Tx1-1_CQ_pol#LINE/L1-Tx1 1556-4801 [Culex quinquefasciatus]
MPFIRKFATVNLNAISSKLKLSLFKDFVWNNDLDFVFVQEVAVENFNFLSSHTALVNISVDGKGTGILVRKNIDYSNVIMNSNGRITSAEIDGINFINIYAHSGSKFKKERDKLFTEDILIHLSETKENVLLGDFNCIIDKNDSNSSIKNVSNGLKNMTSSLTLIDIELNHNKNRIFTFVRGNSKSRLDRIYASKEFAENVRSVETIAVAFSDHHSVVLKLEIGHQFMNFYGRGYWKINSFLLNDPDIIDKFKKKYTELKLRNSYSNLNFWWNTVFKSNAKSFFKKENFLSNQQSAREKSFYYNCLNEIVQKQEQNIDCSNELSVVKSKLMELEQRRLSKIKFKLKAETLHADEKLSLFQVTSFINRSSTSNLIKLRINDEITSDIKKLKNEIYHHYSQKFQNQHVNNTDAETVLGYLNKKLEINDKIHLNRPIEIYEIENALKNASSRSSPGPDGLSYEFYSIFFDVVKDDLLNLFNDYLVNEEYPPALFTAGVITLIPKVGDKYDLQNKRPISMLNTDYKLFTKILWNRIQPMMKNVLGAEQAACVEDNSCITNLRLLRNILVKANKSKKFKGAILSLDLEKAFDRVDHDFLWKVLKKIDFPDEFINCLKKLYKNATSTVLFNGFLTEPFQILSSVRQGCPLSMALFAFYIEPLIRMIDQNINGVLIDNRFLKVVAYADDINIFVKNDSEFDIILQLVHYYSLYSKIKLNLFKSQFLRFNSCMIGPQQIKEVDDLKILGVHFSQSFDKTIDQNYNGIIKFINISLLQQYSRRLNLFQKVYVLNTYILSKLWYVAQVFPPDNKHLASLRSICGKFLWKGHFYKVERNELYLPVLKGGIALLDVECKTKSLFIKNILFGKSDELDTFMINQLVNKNLTRNTREWLQEAEVLKNENHLNTSKKLYDYFIESKKIEIKKQKENPHLQWNTLFENTNKNFLSTTAKSYLFMASRDIIPCNSKLFRHGVKGTESPFCELCGAQDTVEHRFKDCVHSKIIWTWLNNIVINKLKLKVKDAEEVLWCDFNDQNVKLKAALWLTVESLAYCLQTFGEGTLDELKSRLCESRWNSREIFKKHFKHFLNVF
>Tx1-1_HM_pol#LINE/L1-Tx1 805-4332 Previously named L1-6_HM  [Hydra magnipapillata]
MAVKILSLNVNGFNNDQKRNFLMNYFLNFDIIFLQETHCCNTTQLKWVNEWSKKSNGHSIWNNGNNREKGVAILSKKEFKFSQITNDKKGRILAANITLGKKIFRIINIYGPNDPQEKEKFFKSLNKHAPLSDYYILKGDFNMVEDPSLDREGGDRFNPNNIIGKKNLKLFTEKYQLTDIFRKQNPNKKVFSYEHQKYKSRIDRIYISNKLSNLNPKCEYKKVGWTDHSSVSCEIPLEKENPRGPGYWHLNTSLINDKKFLEMLKCEFEFNQKQNSFENSNQAWEYTKSMVRVIAEQRGREIRKEKREKINILEKALNTENSKSDIDDVKIKRIKKELSELNNKNGVFIRTKQVIIEEGEIPSRSLFLLEKHNQNKKTIKTISYENKTVTDTDSIQKVLRKFYKKLYNKEKLDENMQNRFIDKIQNILKDDENTFLNEKFTVNELYQAALSLEKNKSPGIDGIPVEFWQSTWGIYGEEFTRLANENFFENTENQIPWTQRTAVISLLPKDGDLSLLQNWRPISLLCADYKIVTKALALRMAKVLQKILEPSQTCSVPGRNIFSNLFLVRDLIHYTNEKKVGAFLMSLDQEKAFDKMDRNFLIKVLEKFNLGNKFINAIKQTLKNTQSIITNNGYLSKPIQIKRGVRQGDPISLMLYCVAVETLALDFKHSQRIEGIQLPGTTPLKILQFADDTTLACKNPQCVDEILSVLIAFEKATGSNINMTKTKALALGGLQNTQSHLQFENINIKWSNQDGLKVLGITFFTNLQKTADINYDKAVEKFTKILKNFKYRNVSLKCRGMFVNTLALSKVWYVANIFPINKLHEKKIKKEISIYLWQSNFAEPIKRNILNLKVDKGGLGILDVLRQCIALRLKHLMLFRQDPNSHESFYLKKYLLAYSLSKYAKKGYPQWNFLTEINFPKSLKELPFYYSDVVELLKTKQNLFKEKTITTKKVYLLLGDQEDYENLTKTQIFWENTFQTKMPWDKIWWRSFRSYAQGPSQNTKWKILQNILPTKEKCKLWIKNRGRANTNCLACNQNENTLHPFIYCKVARAIWNSLRFVYKKILPETNFNTIHVIFYINIENLPKLDPKAKLVTTLTNIITTEMWRARNMRVMEN
>Tx1-1_NV_gag#LINE/L1-Tx1 215-1483 [Nematostella vectensis]
MVPPTENDMDTPTDTPTDTPKATPTGKTMSYREAALQQRKPTVFRSFAALRTVRLRYDSTPVSAAEVLRAFLGTESADIVGTAQVVSGLEVTFKTEQSAVLAASRGLDVGGRHYQLAPVSVRRTAVSVFVPVEFPDDTFRDLMTRYGDLHSISRLHHKEPDLAAFENGCRLVLYDKLLRDLPARLTTNGASLSFKYTGQPQSCLRCSEIGHGVKECTKPRRRPHRRRREELTTEQERMQCAQEEETLPPLSPDLPLPTETASDSEKDQDEAAAPATAQEHTISADSLIPTESSPKTGTEEPSPKTGEKRPPGLHLTDSPPRKESRAGSRAENERAFVKDLKSDARRIAGVDSSSRLDALALFLQHKHGDYTHQKLRLAGHAAQSELRTRWENLKGEQRAKQLFDKLYRQHFQHLYEGKDVHH
>Tx1-1_NV_pol#LINE/L1-Tx1 1470-4996 [Nematostella vectensis]
MCIINLNLMVMLTYICFTMAFSVCTINVNGIHEAPKREKVFSALRSMNCDVAFVQETHISTATEEQHWEKEWGGPAYWSCGSPHARGVGVLFKPSFNFKFVSLKRDTEGRFLSVLIEVNKTHFSLNNLYAPNLPAERVAFYGNLWRLSHPGVPAIIGGDFNCVSNLALDKWGGSALSGTLGYPALHTFLERFRVLDLYRSYSPSGTAVTYITPDRRVGTRIDRIYAPEPFMQGGSCTVRPFPFSDHAAVHARLTIPDIEPAGRGVWKFNVSVLQNEDFRKSVRAFWPSWQQKRPQFPDRRVWWDLGKFHLKRLAIAASVRLSKEKRHHIAALEREYQRLNTRGADVSRLRAIKQELEDAQTRVLEGVKVRSRAQWLEEGEKPTRYFFGLESNNRTKHSITELHTSSGRTASNTSDILAAVREFYTTLYTAETTDPEAQDSLLSRLDARLSEEERSSLESPLSEADCREALTQMKRNKTPGDDGLPAEFYLRFWDLVGCDLVDTLNSGYDHTHLSESQTRSILSLLFKKGDRLLLKNWRPISLLNVDYKIGAKALANRLKPVLASVLSPDQTCGVPGRSIFENNFLIRDILDYAETKRLPGALIALDQEKAFDRVDRYFLDRVLEKMNFGPVFRRWIKTLYNGSKASVCNNGWLTSFFPLQRGVRQGCPLSPMLYCLCAEVLGNAIRKDPQVTGLHLPQSKATVKTTQYADDTTLLLRDSYSIRRAFALIGTYERASGAKLNATKSEGLWIGSSRGSDQTPVDIKWQRDKLHILGIWHGFGDLTEFNWAPRVEKLEKTLTLWRSRTLSLKGKVLITNVLGMSKLWYTASVLRMPPPVATKVNKLVWDFVWSGKTPQVSREKCVQPREKGGLAAIHIQSKVKSLQLKWIAQVANPDNNAPWANLARYWTSRKLGIRKEWNWLKGNSAPVAAPGKRPRVYDDLLQAMAEIKPWLASAPLRALKVKNIYSEFVALLPNPSKAQQTWEDRLRLPGIPWFSVWRNTYGGLSTNWESDLLWKIRHRVVRTASFLTSHMHCTFSPKCHRCGRTETLKHVFLSCDFATRVWDWAFPIAERINATPLTRNVNNVILTLGLSTAKGDKSKTNLVVYIFKLILWCLWTARNTSLFEKRQAEIVSVAKYKIRERIERDAAVLGPLAAYSRWGINDVLCCWRGEALSVL
>Tx1-1_PM_gag#LINE/L1-Tx1 890-2476 [Petromyzon marinus]
MATYAKVAAANLPGVTRPPTRASAPRPTPPSAQRPLPLRENGIRRYASSSVTIEAYVEALAAIVPPATITHASKISGKAVFFLTTKKVADAAVEKGMTVGGLHVQLEPVASVAARIVVSNVPPYIPDKAVLEHVLEHVSKLGTIVVPVRALXLGCRNPALNHILSFKRQVHVLLTPGQQEEGSFVIVNAGIAHRLFYAKDCIRCNLCKEEGHFRRDCPKPTTARVGEKSGEEGGRARGAKQQEPPLQQAPQQPTPDPPATQPPTPEVVAPTSPPQATNRKRKNTEGPGSQGSNSEEEPLPDLEQEEAVKPPTPGEEAEQLPDAEDAVFAFPDATPSDARAARKKPAKRKKQRASGEGFPQQETVDDEGDIATEIDPSTVVIETHSPPAIHEARQILFAPPLTKRKKSAERHRAHSPRARTKWMGMRRKVPVPLLTQNQRKRHRAIHPKSLSRSHPRPSLTLGERTPLGHAPAQPLQLFQRSRTPRKSTQIGTTASAWGARAARGLHSLTLRLPWSPRKISGNSSTRPT
>Tx1-1_PM_pol#LINE/L1-Tx1 2415-5146 [Petromyzon marinus] 
PSDSPGLPGRSLEIPRRDQREEGQSGHCLGSMEGQQGNKGLCDSSRETPCQAGTRVPGQGEGKAEIFPQTNYKVGGHGGKEQAMPMYIGSLNVNGCREAVRRFSAMSLARKHAASVFFIQETHLTVEDEDDWRKEWGGDSFYSHLDNTSCGVATLFAKGFHPELITHTEVVKGRLLAVTVRVGDVTTHLLNVYAPVTNKEKIPFLHLLRRHLAGIPDDECVIVGGDHNCTLGALDRSGGQPGGVGPKREMQGLLEDAALVDVWRIHHPGQRQFTYTRTRRDGSVTQSRLDRFYISKSFVTCAITSGIRAAPFTDHNLIVLRVRLERAREGASHWHFNNSLLEDGAFLEMFEDFWEEWRKTKTQFDSLAQWWDMGKVHTRLLCQQYTWGSTRLKNADITDMEARVLDLEGRLAEDSDPALLREYEENRERLKGLQEEQTRGAFVRSRVKLITDLDTGSPLFYSLGRQNGRRKSMECLFDGDGVLVHELQQKSTIIRDFYGSLFSPEETSEPAQAEAWSGLPTLGEDGKELLEQKLTRTDLDAAVRGLAPNKSPGLDGLTGEFYAAFWPSLREDYREVLEEASVTGVMPQSWRRAVLTLLPKNGDLRHLQNWRPVSLLNTDYKILTKALSLRLKGVIAQVVNGDQSYTIPGRTIHDGIFLVRDLIAVSQRLGIPIAFLALDQEKAFDRVDHKYLLGTLKTLGFGDAFVRTIRLLYTKAECMIKINGALTAPVKFERGVRQGCPLSGQLYALALEPFLSLIRRRLSGLVLREPSVKLVLTAYADDVLLILRSLDDVALLHECQEVFSKASSSKMNWQKCSGLLVGAWDMTECPEKAKAINWSTTSLHHLGVFLGPEEEPPQRNWVELEEKVKERLGTWSRLCKFLTFRTKTLVVNQLVTSMLWHRLFSLHPPM
>Tx1-1_SP_gag#LINE/L1-Tx1 2-529 Fragment [Strongylocentrotus purpuratus]
VKCQVCRQSGHMRNECPENRQALRSNLATPDASSHTALEDSTTQDENTQQTNTNKIRQTRLADFVSKLVHRPAQNSNADSASAEVLDLRSPRRTRSASRIESSSTYASDGAIHYAKPQSKTRDEIKHAQETVSDDQQSESGEEDSSLSPESPPKTSTTKGRMPLKRKKKSPKKKK
>Tx1-1_SP_pol#LINE/L1-Tx1 585-4431 via tfasty with Tx1-12_BF_pol, 1 frameshift. [Strongylocentrotus purpuratus]
MNEGQSNCETVKNKXDNNVHFVTLNVRGIREVMKRKKIFLWLHRQKCDIAFLQETFLSRNIENIVSKEWKGLCLFDHGTNHSKGVAILVKESLPITVIDKHFKGDGRAIALRFSYQDRMYLCINVYAPAKNTLKEHFYSSLCIWVKKIRKLNDVMIAGGDWNCVQNKKTRHKWSLICILTKKNFVKFRKNNNLVDVWRKMFPERKQFTWRQLSLNIYSRLDYWLMSKEHFSYIYSIDIKPVLKCDHNGVSMKLKILAQSRGKGCWKLNNSILKDEVFKENVKRIIRKVNIEFSQFDKQLRWEMCKIKIKEFSTKYTVDVNTRKKKYIANMESEYDNLCKKIDEGSCAYDIDRMKCLRQKIDKWYEYQCKGAFVRSRARWLEFGEKSTRYFLQLEKAKGKKKEIDCLESNGKIIKDEQKILTGIREFYCKLYKGNNTEAGFKEYVSDINLNVLNEEDANLCEGKITENECWEALKSMKMNKSPGSDGLSVEFYKCFWGDIKHMVIDSLNEGYDKQQLSCTQSQAILTLLYKKGNKNVLDNWRPISLLNIDYKLAARILSIRLQKVIYKLVSQDQAGFLKNRSASECTRLIQDTIDYCLFANKPVVMMFLDFKKAFDTIGHVFLLSLLRELKFKDSFLRWIETLYNGAHGRVLNFGWISDKFAIERGVRQGCPLSPLLFIIIAEVLGKRIKQNAKIEGIQVPDFNEDQADFKDIRIVQYADDTTIITRSVKFVKEIMKEVELFGAHAGPKINWTKSNLMKLNINDDEVEDLHFTEDPIKCLGIYVGKNSFDVQNLNWESKVEKIKNTLDLWKMRKLTLYGKVVVIKHLVMSQIVHTATAVPIPSKIIKRINKLAYTFLWNSKTEKVKRNICHNPEVEGGLGMIDLESKCRSLRLSWIHKYLRDEQSAWKILFKYWIKKIGDLPLCLHFNCKKSDMYRICRKKQLPNFYVDMFCSWAELKYIDMFKVTDIENEMIWYNSNIKDMNELLYFPNWMRNNILKVKQVLVNGIWKEVDSICINFQENELLSAFKLAKLKSAFPNFWLQKLRNRLQYVNSPPSAVESSTIEIVTGDSIDVAVMKAKHYYNLMLEKNRQDLPCIYFWNAYFDLPNEFNWKTVLHYKFYFINDNRIKQFNFKYLHRILPSKDNLCKWKIKNNNLCDICKIPDTTNHLLLACKKVSLFWKIVSKLIDTLFNFKIFLNEEILLIGHEIERREMNLVNLILNFAQFIIYRNYIRECFGSEKHRIHAVYLIKELKVEIRTYLNMKCNQKKFDTNEVTKVTKMFSLF
>Tx1-2_BF_gag#LINE/L1-Tx1 450-1217  [Branchiostoma floridae]
MPPKRNTNTNAVMDEEVPVSVAFMKEMLEQQKIYYKDLLDQQEKNFRSFVQIITDSTNQRMDNLVREMQDLKNSLNFSQGELGDMKTVSGKNVDKIKQLEQDILTYNNEVTEIVNKVDYIENQSRRNNLIFDGIKDDKKETWEQSEVKVKEVLKTKLRLNTDAIEIERAHRNGRPGDRPRPIVVKFSRFKDKQSILRHAKLLKGTSIYINEDYSERIRQKRKDLLPALRAARERGQVAHIRYDKLVISDRGTANN
>Tx1-2_BF_pol#LINE/L1-Tx1 1305-4982  [Branchiostoma floridae]
MSSSNSLTSKLTFISLNVRGLNNKLKRQKIFRWIHNQKTDIAFLQESFSAKENEKLWANEWGGKIVFSHGTAHGKGVMMLFNPEADIDLEQTLLDQDGRYIMVNGRVNDNDVSLINLYSPNKRTEQVKFFKEIHKLAQENASGTVIIGGDCNISLTELDKTGGRPIDDKNYAIKEMQCLLKSFNLADVWREKNPNTRQYTWQNENIKCRLDYWFAPYNLVNLSECSIKVAPVPDHRAVIMTVKSPRYQKRGPGFWRLNNSLLEDQTFDKEMTDLLTNIKDKLKDIQQPGIQWEMIKMEIRSLSIQYSKNKARSRKNEEKELEEQLNSLMRETDEFDDPEKQKLICETKERLESIQTHKTKGAIIRSRCNWNEQGEKSTKYFFNLEKRNYKEKTISSLTLEDGSITTDPKTILLEEAEYYKKLYTSSYPDMKESTYFLDNDDVKKLNTEQKTSCDGEMKEVELRKALQAMSKNKNKSPGCDGITIEFYIKYWNLLKDYLLNTINDAYHNNLLPISLRRGVIRLIPKKGLDTSNLDNWRPISLLNVDYKIVSKALTLRIERLLPFLIHEDQTGFVKQRYIGTNIRRIYDTIDYYDKKKKPGLLMFLDFKKAYDSIEHSFILKVLETVNFGHNMIKWVKLLYTDITSCVLNNGYISPWFSVHRGVRQGDPLSSSLFIICIEMLASAVRADINIKGLQVYGRMQKLSMYADDMTSLLLDIPSALKLLETLNLFKDCSGLDLNYGKTEAMWIGSNKDRQDKPLPIRWPDGPIKALGAHFGHDRHRCYKEDLDKNYTKMVQACSIWKQRNLTLIGRILIVKTIGISKLIYICSVMHVPPQFVKQVNEYIFKYIWREKPPKVKMKTLIGKKCQGGLKMIDFNVMNKALKAIWIKRFVMDPSKEKEHLFARWGGFLIFRCNYATSQLDLNDMPLFYKDVLVAWEEVIGYEPKTHRQICSQVLWNNRFILVKNAPIFYKIWIDAGIIILNDLLYGDGSFLTNKDLHNLYGLTMDSRQILNYNSIKAAIPKNWKDNIKNNGKKCASKTIIEYTERIHPLTTTCKQIYDTLIEKQVVPPTRENEIIRKIGKDNIEKVYTTAFNVTKETNLQYFQYKIIHHFLPTNSWLKKTNLVKTDRCNNCKEKHTIVHLFVYCKEVKIFWKQFCLWWRSYENQDIVLDENLIVYGVCCHRTASTTLIYYILLAKYCIYLCYVKNMKPNFAHFKNRVNNSIEIAL
>Tx1-2_CQ_gag#LINE/L1-Tx1 153-1349  [Culex quinquefasciatus]
MANSVRKNTAKLVFGPGIKVPSYLDVLKFSMDTLKLSAADIHSIYKDENGGQFYVKLIDEETFSAFIAESDEHYQFKFEDGTTARVAVEQASRVFRYVRIFNLPPEIDDATIQYVLGQYGTIRQHVRERFPNELKVNIFTGVRGVHMEVAKEIPAHLYIGHFRARIFYDGLKNKCFFCKAEGHVKQNCPKMAAISTGSGSGSGSSGGSGSSAPSLGRPAKPIIDFGQPIAPAMTLLNQKKNDDTQNPITTTSTQAVPSASTTTTVAVPSASTTTSPSVSTPAPISSTTVAPSASTTTTKQTVDTNTNDGVLDALRPGGVSEEHIDKADTDAMDAEISELDRQTLLKRTKSSSPVSSEGDAGKLGGKGKGGKGKGGPTGEGDGFIPVPNGKRNKKKKTT
>Tx1-2_CQ_pol#LINE/L1-Tx1 1411-4659  [Culex quinquefasciatus]
MATTTFSRKLATININAISTNIKLGLLKDFVWNNDLDIVFLQEVSFENFKFLASHFAFVNISVDNKGTAVLIRKNIEFDNMLMNPNGRILSVTIDKVHFINVYGHSGSQYRHQRDVLFSNDIIPHLSAAHPNVILGDFNCILLNSDSNGTVKNLCQGLKDLTSNLDLIDIGNSIHRNTIYTFFRGDSASRIDRIYGPKDFLEKVLSFDTLTTAFSDHRAIVLKFNVDSNSNVTSTGRGFWKINPSFLHDEDIKREFVLEIQNTRQRFAYNNNFCRWWIEHFKPKAKSFFKTRSFELNKFITSSKSFLYGCLREISCKQSNNENVEKELSFVKSKLMNIEQNRLSNLKLKIQPENIIEDEKLSTFQMSKYAAKNSIMKLLINGNLTSEKTKLQLALENHFSLLFEGDKTFYPGVNNIFNHVKNRLTLEQSNNLIKPIDLNELQEALQQASKKKSPGPDGLTYEFYCTFFDEIKNDLLKLFNLFLMGEIPNTAFVEGIVTLIPKKEQSFEISDKRPISMLNCDYKLFAKIIMNRLQPLMDSLIGPGQAAGISEKSCITNLKLLRNLIIKAKKSKSLKVLVASFDLEKAFDRVDHHFLWLTLEKFGFPIQFVNLIRNLYKNASSKILFNGFLTNNIFIKSSVRQGCPLSMALFIIYIEPLIRMLYDDVRGCLIDNSFLKVIAYADDINVVIRNNHEFDKTLELINYFSIFAKIRLNVGKSQYMRLNNCLSGPHVLKEVSSLRILGIDLSENFNTIIENNYSRIILNIKFLISIHHKRKLNIYQKSWILNQIILSKLWYIAQVFPPNNSNIAEIRTICRNFIFKGVGLYKVKFDQLYLDVDQGGLSLVDVESKCKALFVKNILFPSQDGIKDSFMLSQQTNNTLSRNSREWLSLAEEISNDTDLNTSKKIYRLLISKQNIKIKIATEFPELPWQNYWQNIQSNFISSEEKHSLFIMLNDLIPTKAKLFRHKVRDTNTNLCEYCNKLDTSKHRIKLCSSSRLVWNSVKTTIIRKLGLDIVDPEELLGKTFKNEKEKLGLWLVVEAIAYNLKNFGNGTVADFECKVREKRWNNKKFYDRVFGKWICYI
>Tx1-2_NV_gag#LINE/L1-Tx1 177-1142 [Nematostella vectensis]
MAADRRARSLVFKTQGSPALGDIKQALIKEIGEGKINVIQELKVGEFLVELKEEPLVERLIEEGFDIESQHVACHPPRGYYTSVSIMGLRAYVDDGKVIETLRKHGEIKSDVIRLKYKVGHELEGLENGNRLVKMVLNNASIPYSLKIDDEWCRIIHSNQQLYCMECSDFGHTRRKCPNIECRKCKERGHISFDCPKHDETTNTNEQKAPKGNTSTDEANTSAGENTEYAQNMNTEEDSELGTQNTPTLFTPTDEDETQDDEMGEESNATGQKRTHDTTTTDSDQEYTVVSHRRKKTSQGGIKPTQAAKNGKTNQKITNVS
>Tx1-2_NV_pol#LINE/L1-Tx1 1132-5061 [Nematostella vectensis]
MYPKRTVTFFILILAITMPSLVSINSHGLRSQDRRATTFSSLRRNRYDIILLQETHWTDEIQDDILREWNGDIYFSNGTNSARGVAILLNPRLDYNLTQTKHDTTGRVINITIELEDQTLCITNIYAPRTDTERKQFYLNLDPYLATKNYNIIGGDFNCITNTRLDKLGGNPDARQTANTELYTIAAKHDLTDIWRDRNPDTRGFTWTGRHPTDNTIIRTRIDKFMVNKAMTHVITNTEIKPYAHSDHDSITMTLDFGQQKRGPGYWHFNNSLLTDALLDAEIQHFWTYWLTRKNDYDNPLIWWDKAKQHFKRISIKHSTARRKTQRNERSQLERNLITLQQKAATGTEQDIENYLLARQKLKRFDLDDLEALKIRTKLQATEEGEKSTRYFYSLEKRRQADQTIKILTKDNLDTATEPLDIITETYNFYKELYTADERDERAQDEIFNTEIPTLPNDARESCEGLITENELKTTLLTMENNKSPGIDGLTTNFYKHYWYLIGPEITKIYNYAFEHGTLTVTQRRGIITLLFKKGDRTKLKNWRPITLLTTDYKILTKALANRLKTVLPMIIRPDQTASIPGRTINDNTRLIIDAITYANETNKPLALITIDQLKAFDRVSHSFLFETLEKFGFGPQFLKWIRLIYKSVTSSVKSNSWLSAFINLERGLRQGCALSMPLYVLTAEIMAIHIRSNTNIHGLRPPGASNEVKLSQYADDTTILLTDDNSITETFKTLELYERASGAKINITKCKGLWSGAFAHRTDQLHDFDWYNDYIPEKVLGLYIGNADWTQRNIEHKIQKLNNTIDAWQHRDLSYKGKALVINALLTSTLWYHATNITLPDWAIHDIERAIYRFFWSDKHPLVNRDVLALPLSEGGFNIPRLKTKIQALRINTVKRLLAPGTAHWKHFTAHFLRISDMKLGVRTLALDYTLQQINRDIPSFHKELLTAWHGYQPNTIRTCTPQTLTDILNEPILRNPLIQANSKPIFHAKWASAGLIQLKDICYEVIPGFLPPTAIHEILTEGDEYGPRTLLQTTREITQILDALPPRWKQIIIRPPRIATTQRTMQPCFNVQPTIPGNPPIELNNMKTRHFYKTLRRSKETEIPALTYWKQLLRPEPTFNASYWKTLYSPLTNNKQGDTNWKLTHRVLPTAQSLHRMTVYNTDRCHRCGMTEHIEHLLIHCPEVTDLWTRIQLYTDKMTDNRLKLTNKIILLGFTPDQQDDYSKTTTDLINWTLTTARCAIHKSAVDYRVRGITTPPWAIFASVVREHLTHAQKTMKIRHETENFQLTYCIGEALASYSNGKITFHI
>Tx1-2_XT_gag#LINE/L1-Tx1 1-1176  Fragment [Xenopus tropicalis]
ITFLKEQDCLNFFEKGKTLLTAPEMEGILIVPSFQMEERPVVVHLFNPFTDVDEIVAFLRRYCSSVRGGVKQYNRFDYFNGKLKFWVRLQPDPDGIGGVKHPPANFSLGGNRGFLSYPGQPFYCRSCLQFGHTKDDCPNAPRCRNCGEGGHEVGRCPKPRKCDICAMEGHLCKDCPQKNRRYFSEVVAQRPYVRSPPASVVKEVVPEPTVSQEPAAIVDAAAVPLVVVEPDVVEESIGSVEPSSPVLSPDAVVMEGESGGDGVMAEESPALRWDLSSDSELSDMETVSSKTKLSAEADGYPSSKKVKFTEGIEHSENQFRVLMQDSEEDVNPSADIQSFPTTAESLNVSLIPGTVRLSGFLDNEVVKDFVTTVGFTEKSKGKGKEKSGKEK
>Tx1-2_XT_pol#LINE/L1-Tx1 1221-4613  [Xenopus tropicalis]
MAVTISSLNVRCVGSKAKRAAVLDYLKSQKGDIFCLQECGLKFSPLASEWGEGESIWSPSAENRNVGVGVLVKGNKTKVLSYSVLEPGRLLLVNLKYFDISFRLFNVYAPVDKNARVELFEKMMFNFPGRGPVVIAGDFNCVLSKEDREGNLDFSLDVSSKMLSGIMQDFHLKDAFVSGGDVNDRFSWFSDAGVSKSRIDMFLISSDIQVNKYVSFNNIFSDHRLLQCELLFGKNHVFGKGCWKLNTSLLGDEQIKMEFKKMYSVWQNRKENFGDILKWWDWVKNQIRVFFIRKGVMRAKREKEKYESLNFRLQYLYKLRNLGMDVTKELVETKQDIKKCIAERGKKIIFQAKVEHLENGEKCSRFFFKKVFSGRECFTAVLGPDGQEIKDKEGIMREIEDFYTNLYSEKEREESAQNDIIDLLDNSLDECDREVLNKDISEGELEIVLQSMKNNKSPGVDGLPYEFYKIMWDVIKKDFFELCNFVFRFGVVAESTKEGLIVLLFKKGEKKDIRNWRPITLLNSDYKIIAKMVANRLKGLIDKVIGEEQVCGVPERQIHQNLVFIRDIIWDSKERNVPLVLANIDFEKAYDRLAHDFLFRVLEKMGIAGKLLDLIKALYRDIYSRVRVNNFIGGKIAVKSGVRQGCPLSPIAFICAIEPLIQAIRKDKVVKGYMVPGGMGRDVKVLGYMDDIVLICPSLSSFNRAKLHIKLFCLASAFKVNWSKSTFKNFGRKLGIVEKELKEEKVGMTILGIFFTDDLKGKECWEEVGKRIVRKLNFWRLRDLSLGGKVLVIKSVILPLILYVSHVFPPSVRIITKIERLLFLFFWNASMERLKRETIKKEVAKGGFDFPRIEEFVFIHYFTLCIKILSRETFVANMMTFLAGYMFKRCGVVLWDNKKPFCFCVPQFYLVIQVKLEKFSLKDVPLGEWKKKKKIMQILKDRDQQCELSLLNNMQTKEVWSKLKHVTVLGKQKDVVWMGLHNALPTRVFLRERNLIQFDKCMREGCAGVEDTTHVLWNCNFARETWKKCGRLIKEITGLQSLSFMVIAFGLTSLGKVQSKLLWIILSCVKQVLWESRNLLVFKKEDLSVRQAVNLVLSRLYVYYWMEVRKKGEIDAEGLWKTKKWVELVS
>Tx1-3_BF_gag#LINE/L1-Tx1 448-1302  [Branchiostoma floridae]
MSRKKAITQDDSELVSMSTLKDLLDNQKEVFNNMIELQQKNFRSFMESTMECHNKRIDNLIREVQEIKVSLQYSQKDIEDIQTNSKQQEQRIKETEAKILQLKTDITSNHNKTDYLENQTRRNNILIDGITDVKEESWEECEQKVRSLLKDKLQIDPKKIEIERAHRNGRFQPDARPRSIVAKMLRFKDKETILQRARYLKGSHIFINEDFSEAVRQKRKELIPEMKAARERGNVAYLRYDRLIVHPPRPTTRSTTQRHSNNEGTDTGRRRQDLRSTRATFGAV
>Tx1-3_BF_pol#LINE/L1-Tx1 1315-4977  [Branchiostoma floridae]
MDSDTTTQCYLTSELTCLSLNVRGLNDQVKRRTVFRWLHQQRVDVVFLQETFSNAKIERVWRAEWGGTILYSHGTNHSKGVAILVNPRKSCEIINCKNDTNGRLLIVNAVIAGEQVCFVNLYAPNEITEQYMFFQDIRTKLRENSTCHTIMAGDFNCSLTDMDKRGGRPVKEKLRTIQAINLLTKGQDLIDIWREKNPKERRYTWRDANQGIMCRLDYIFVSDSLKARCGSANIIHAPSPDHSAVTVHFEPQNACKRGPGFWRFNNTLLNDKTYTDTMKLKIDDARAKYSEIEDKRLLWDLIKMEIRSFTMYYSKMKAKERKKDELSAEKQTNSYIQQYESNPSQENWCKYNRAKEKLDEIRHLKVKGSIIRSRCRWHEEGEKSTKYFLNLEKRNYEQKCINELLTENNSVITDPGKILEQGKQFFESLYTSKETNPHDPKFEEFFTNNEINKLTGEQRDNCEGNITVKEALTALKQMAKKKNRSPGTDGLSFEFLLYFWDKIKNEIVDSFNTALEEGELAISQKRGIIRLLPKQGDCRKLENWRPIALLNTDYKILTKCLALRLEPVLPSIIHENQTGYVKGRYIGTNIRRMWDIIQETERTQTPGIALFVDFRKAFDTLEWNYLEKALMTFEFGPIFRRWVSVLYKNSCSCVINNGFTSDWFTLKRGVRQGDPLSGLLFILGLELLACKLRSDTSIVGITINNQITNNLMYADDTTIFANSVTSARRALATIETFGQFSGLQASKKKTEAMWIGGYKERKDKPLDVHWPDKPIKCLGVHFSYDKAKCEELDFNDKLTKMDNILKVWSGRNLTLIGRILIYKCLAVSKLIYNCSVLTTPPNFERKVNAIGLNFVWNHKPHKVKFSTLIAEKDKGGLKMMDFASMVKALRASWVGRICTTQALESHFLQYGGAFLFKCNFSIKTLKLGNMPTFYIKILEAWEELNSHRPQTSMEIKQEFLWNNQYILQERKSVFWKEMYLCGIRTIQNIIDDGGNILTPKAITREFGFEFNASDILRYYGLCSSIPPGWKKVLTDPINSKPDVRSTLSYKCKQLYQLFVNKIVQPPSKQDEITRCLQDEEDIKKVYMLPYICSQETKMQYFQYRIIHSFLTTNAYLKKIRIKDSDQCPYCEEKQTIVHLFAECHTVKTFWKDFTDWWKKENQHPVGLTNIEIIYGHLSHIENNKTLNRCILQAKYYLFCTAISKAYPTFHAVKHRILEYA
>Tx1-3_CQ_gag#LINE/L1-Tx1 130-1146  [Culex quinquefasciatus]
MDKTRKNTLKMVFGNAAKVPAHVDVLRFTANVLKIPATDVHSIYRDENDRCFYVKFLDEPTFVEFTGRIEEQYRFVHSDGQVAVVKLEVASRLFRYVRIFNLPPEIEEKDISAVLSQFGTIRQHVRERYPTEYGYTVYSGVRGVHMEIAKEIPPNLYIGHFKARLYYEGLKNRCFYCKLEGHIKVNCPKIASLKSSTPAGSFSAIVAGAIAANATDLTLPTDMTTLTPQNKPPIQPRDPDRGISPTPEEAGDDSEMDDDDEDEREEESGADESPDLGGDKHRKPRSSSRNVLEQLENRSRSRSLIRPEGTGGNGGKNGKEGKGGKGGKGGKGRGRPRK
>Tx1-3_CQ_pol#LINE/L1-Tx1 1377-4646  [Culex quinquefasciatus]
MPLVRNIATANLNAINSDVKKSLLKDFIWNNDLDIIFIQELSFENFAFLNSHTAIVNISANNKGTGILLRNNLQYSDIILNENGRISSVCVDSINXINIYAHSGSNQKKERDTLFNEDILIHLAHGKENVIVGDFNCILLAEDMNGAVKNYCKGLQNLISGLELKDVEQTILKSRVNFTFXRGTSKSRLDRFYASNEFINQISCIKTLPLSFSDHHGVLVKLNLKDNAPNIFIGRGFWKLNSFFLNDNDILTQFTAMYNGLRNRNSFINLCYWWNEVMKTKSKSFFKKISFESNQQTIREKSFYYRCLNELFEKQKEGENVCSEMKIVKSKLMEIEQNKLRFYRYTFRTSNLIENEKLSIYQITSRIKNSTPSKLISLRINNKVTSKTSELKSMIFDHFKNIFCKRAESGSDNDDILEHITKTLNDAERDALSKPIELQELKDAIFNASNNSSPGPDGLNYDFYKTFFDVLNTDLLNLFNGYLVNNEYPPGHFSAGIISLIPKKGDPHDLNNRRPISMLNTDYKIFTKILWNRLQPMMKKLIGPGQSACISETSCVNVLRTLRNVLIKSKQTKHFKNLLLSIDLEKAFDSVDHEVLWKILKKFGLPDSFIRCISRLYQNATSKVLFNGFFTDSFKIECSVRQGCPLSMALFCLYIEPLIRMLFESVKGCLIGDCFVRVIAYADDISLLIRNDHEFDKALELINYFSIYAKIKINTVKSQFLRFNNCSSGPHQIKEVDNLKILGIIFHRNFDTTISENYKDLINKLKYTISLHHRRKLNLFQKAFILNTYVLSKLWYIAQIFPPNNKHIAEIRRICFKFLWQGYFYSVAKNELYLPIYKGGLALEDVEAKCKSLFIKNILFFKTNSGSSVDEFMIAQSNNRAVTRNAREWINLAIELKPRTVLNTSKLFYNYFIDQMSIKPRMQTEMQNLQWDLIFENLDKKFISSDTKTYLFSLLNELIPTRSKMFRHGIAGIDSPNCILCGNLDTITHRIKSCDKSTVIWNWIKNLVIVRIRINTRDPEELIALQFNSKSYKKNAGLWLVCEAIRFNLMNYGLDGMGCLEKFKKEIRDARWNNKAVFAKYFKNVLNIF
>Tx1-3_XT_gag#LINE/L1-Tx1 3-713 Fragment. [Xenopus tropicalis]
VQLSKxSTVVITILLYSESVDLSDVLFWLKRHCQALEEPQRLSDDEDYWIGGWKIKVRVLQDGGRMQYFFIGSDKGVCFYPGQPRTCYKCGSNRHLAYSCEKIRCSQCNSMGHTKKECPKDVVCAVCSAVGHYFSNCPKASHRVGQERELDNLMNEALNEFLQTEPDGGRDLAPNETVSQAISEADKADDSVMEGAIKPGIASYTSRGELPGGEEEKEQTKEKDDQCPGEKEELRR
>Tx1-3_XT_pol#LINE/L1-Tx1 939-4316 via tfasty with L1-53_XT_pol, 1 stopcodon. [Xenopus tropicalis]
MTLRISSLNVNSVRSTARRGLIYNILMSVVFDICFIQETRLKNNNDVFCAKREWTLGPSYWSFGLDEYDGIGVLFKTSDFSIDKIIEIHPGRCLLLDLTKNGTSYxIINVYGPQKIADRKDLFSKIKPYCFTSKVLVVGGDFNCVVSNTDRTRNHVLQYDENFLKKLLCQAGLVDSFSFFHPRKRGFTYRKAKCASRIDRLYINKQSVLSGYNLIPMEVSDHDMIVMSISLDDPKPYGRGIWKLNSHSLDDEKVKQEFYSFYNDRRTTQFLYDNTSDWWENIKSDIKLFFKSRAKRISNAKYMRYMALRLKLSRLYSRINNGEIVDSSYITCIKNEMKTLQYDRMDSLKAENKFDSWGFLGPDPFEACKQRVSKKVISGLYDSDGILRTKHEEIKNIVTLYYKDMFNGKEIDPVKIEQYLGDVSNPVLDQESASEMSLPITEDEVKLSIKSLIDNKSPGTDGLTSEFYKVFSELLVPDLVALYNEVLREGKLTDSQYVSVLVLLAKKGDLNELRNWRPISLLNTDYKILAKILFTRLSKVTDALLSPYQSCAVKHRSIHDVLLLVREVIEDARNNKDNLYVVGLDQTKAFDRVHHAFLYHSMKKYGIPDVFIQWLKVLYKEAVSLPLINGSLGTSFPLRAGVRQGCPISPLLYDYSIDPLLRRINGNRGIQGKEVCLRGRSEWVKACAYADDITVFLHSAADNSALREEIVYFSDVSNSEINKDKSEALWVGEEGKVFAIPYERKESIKILGITFGSADMVHKNWEEKLEICSDKVRSWRNWKWSYRKKIQAIKRFLLPLFIYTSFVFPLPDTLVPKITSLFFQFLWGNRLNIIKRNVAYLPRKAGGLGMLCPQLFFNLLFLFKNLSFLQNDKECLWGVLFKKQINEFFRVWVIGDKIKRMVGKYKQCAGYAQQCIHVLIKWQILYGEFLQSDRKKLYNSLLGKYYSVELALRDCPSSMVPNALRNINCPRVPGKMRDVIWLCFHGKLYVRANVKCKGINERNCPRDECPGELETMSHFLYECPFSRKVWGELAKDLKLPHLKAQSYAQLVYGDFKQPRDLNKNTLFVLNAIVIYHLWNARSLKSAKQIFLSIESVKRLIFNDLRDVYVKETDTDYWKNMDLSFLF
>Tx1-4_BF_gag#LINE/L1-Tx1 28-1674  [Branchiostoma floridae]
MPQVTPSAYSKRRTASITFLTKQESDFDDVLELLRTHNINIRTEVDTIQSSGKNKSEVVFKTNNALNKWAPFLAADNDIDVELYGNGVTVVTVMGASIELDDNYVRHQLKEYGEIKDGRYLTYASRGYPEIKTGTRQYKIALKKHIPNSIRVGGDNVAVRYNGQPRMCHRCGGQDHFVAACTVDKCSRCHELGHKAGDCTEQIRCNNCKGEGHTFRSCPLSFANKLSMTTAWGGTTSWTKPTETVSQEKSGGKEAKQNQAKNGSEAKQGGSGGTQSHKKDPPLIESVSGESEGEESDKEVMGEEETIPHKVVGGSSAANSGDKNKGVEVKPDGETSPLKEDDVSKAEAVVKTPARAVTPPSESPPKGSHEEGFWDLGSLPEDGANKMPEDEEEVEEMEVDKPTTTFKLALSESLAEKLSGDLGPGFTIGDGEEGPELTINLAEPLVIDDSDREENAPKRPHQSDPSESDDSDTSAKNPKEKLERKKVKKDPDNTAKFGSQIDMFASSGESQSEEPKNGSKTKKPGALKGAGNKGGGNKGGKTSRGKPR
>Tx1-4_BF_pol#LINE/L1-Tx1 1675-5181  [Branchiostoma floridae]
DSLTDLKSMSMDLRILTLNVNGMKEKLKRSQVFDFCRNLKVDVACLQECHISSLADKSSWSRQWGNKTVWSLGTNSARGTGILMSDKWSIVSSKVDMDGRIVSVLISDGSSRYNVVNVYAPNTARDRAVLFASLHEYMFPNATLIIAGDFNCVLDPALDRHTTSSASPGLNTQDVIELRSLCTDLGLKDTWRDEHPTLLEYTWRSPSNQTRTRLDRIYVSDDPSTKARIVSCPFSDHDAVVTDIEPTHPVQQGRGVWKCNVKTLSDPLFVQDLEEQYRGWQNQKSDHSSMREWWDEVKVKIRDLVVTHSKRRAKGARLVQKGLEKEVDMLRSRLNCGDCSTTTLREYEEAKDKANKWVRDQLEGQRLRSRIKHFEEGEKPTRFFFRSERDEGKKKLIREIRKNDGDITSETDEITEVFRDFYAKLFTKDQLDSQDRDYFLSKLEETLPEEVSDQLERPISAEELLTALKSMANSKTPGSDGLPKEFYLQFWDLLGPDMLEVFKEGLQDGLLAPSQRQGIITLLEKKGDQLNPANKRPISLLNVDYKILSKVLANRLKAVIGLVVHTDQSCGIPGRSISDSVCLLRDIAAYVNDKDLPCVFLALDQEKAFDRVDHDFMVSILERLGFGPTFRQYIATLYSEVSSKVLVNGSLSSSIPVERGVRQGCPLSPLLYVLCIEPLAAAIRADTQIKGVHLPGGSGRDTKIVQYADDNTVVLTDSRSIDRTFELISKYESGTGAKLNLGKTVALWLGCWRGRQDQPYPIGGWSSSHLKILGSPVGNQNLAEEAWLQRFAKFKATLEKWKDRKLTLFGKVLVINSLAAATLWYVAPVYPLSRSVQRKIEKLMFEFLWDGKTELVNRKTLYLSKEEGGLGLVCIPLKAKALLLKSVKKALTDPEAPTSRYAHYWLGLSLRQLDPESWNNNIPHSMERPPHFESIFGHLKDLETKDVQIDWKSCTTKSLYDDLLKAENIVPRCVQNNPTVRWKDVWKAIHNPLIQKWDRMLAWHAAHNSLKTRQKLKSWRGFVDSDVCPRRGCNMVESVTHLFWECPVVAEVWEWVEGLIYRRILPQFNMPGAFAVYSLVFQSMPTKTRLVLETLAAMTRSLLWKSRCEVIFEKKHFTGQELITRLQKMISERLDFEFARLSPAAFYDTWVEGHTWIDFDISHIVVHL
>Tx1-4_CQ_gag#LINE/L1-Tx1 143-1342  [Culex quinquefasciatus]
METRKNTLKLQFVTSAKVPSHLDVLKFMAKGVKIPAADVHSVYKDENDQKFYVKFIDETSYNRFCNTVEDQYWFHYEDGSRTPVQLELASRQFKYVRLFNLPPETEEKEIAAALAKFGKIRQHVREKYPADLGYHVFSGIRGVYMEVEKEIPANLYIAHFRARVYYEGLKNKCFFCKAEGHMKVDCPKLASLRSSAETGGQPSYSSVTANLKIATGSAKETASPLLNMTLIPVPAQRTKTKEQAQQEEAGVVPSTSTVQPPVQANPDLALPQAKPAEGQGEEQKEASPIDAIVANDPSDXSAEQTDAETDDETEKCNDGQGEAGGSASDAMIVDGDQQNANDTKQEEAIDREEWRLQQKQQLKRPIAESLSTDSNAGQGKGLLKKKPRGGKGKRGSKGK
>Tx1-4_CQ_pol#LINE/L1-Tx1 1572-4826  [Culex quinquefasciatus]
MAYIRKCSTVNLNAISSTLKLSLLKDYVWNNDLDFVFLQEVATENFRFLPSHNALINISSDGKGTGVLIRNSIEFSNVCMNPNGRIISVVIDDINFINIYAHSGSKYKKERDLLFSEDLLIHLSEHKENVILGDFNCIIDKNDSNGLNKNISNGLKTLVTSLGLIDIELKKNNTRTFTFMRCNSKSRLDRVYSSIDFLEKVRSLETVPVPFSDHHSIIIKFEINRQFMFFHGRGYWKMNSSLLYDLDILNKFKNLYSNLKQRNSFQNLSYWWNNDVKTSIKKFFKTENFITNQQSHREKSFYYNCLKEIIEKQRANIDCSQELALVKSKLIELEQQRLNKIKYKIKPESLQNDEKLSLYQITSFINRNTSSKQLKLRIDGRETSDYNLLRNEIFNNFSQKFKKQPVNNDNTDEILNTLTAHLDDHEKHNLAKPIEMSELETALRFSSKRSSPGPDGISYEFYTHCFDIIKNDLLKLFNTYYINEEYPPGLFTSGIITLIPKKGDKLDLQNKRPISMLNTDYKLFTKILWNRIQPILEKLIGPGQAACVKDSSCIHNLKLLRNVLIKANKSKKFKGAILSLDLEKAFDRVDHEFLWKILKKFNFPDNFISCLRKLYKNATSSVLFNGFLTSPFAILSSVRQGCPLSMVLFILYLEPLIRLIDRNLKGVLIDNNFVKVVAFADDINIFIRDDSEFDMTLQLIHYYSVYSKIKLNSKKSQFLRFNSCRLGPQQVKEVEEMKILGITFKKDYVETIEKNYKDLIQSIIVSLILQQSRRLNLFQKVTILNTFILSKLWYVAQIFPPENKHICTLRSICGKFIWKGLFYKVERKELYLPVLEGGLSLIDVEAKCKALFVKNILFSRSNDVVNIDKFMLEQIHTKTITRNTREWLKDADLFMNETHLNTCKKXYDTILSRMKITVKKRIELPNKNWQNLFENTNKNFLTSDSKSVLFMILRDIIPCNAKMFRHGVRGVESPNCDCCGVPDSVEHRIKNCCSSXKVWSWLNEILKTRFKLTLCDADELLSCNISETNSKEKAALWLTIESMCYCLQNSKSGSIEELKSHIRESRWNKRELFKKHFKHFLNLW
>Tx1-5_BF_gag#LINE/L1-Tx1 19-1647  [Branchiostoma floridae]
MSKLARYQSVKITFLELHHHQLKDVIDLLTKHGVKSMEIQSVQSKPNNDTTEVTFTTKAVLQRVVPSLSSDRSIDVETFGTGITVVTARGIPFEFEDNYIRLRLKEYGMVLDTKYLTYANLGFPHIYTGTRQYRMKIQKHLPNTVRLGSDIVSFNYAGQPRSCHRCGSTAHFVADCPETKCGKCWELGHVAKDCNNQMKCSVCLEAGHSARTCHKSFASVVKPSSSWATQAKPAPGTSNAGPGVPKTKLVSSVDSESEESGQEDMLEEETTPHKLVGGPTAANPGSETKSPLKVVAADKARKSKGDEGKSDDKVEEEVAKSDDKTSPPQVVKTPVRAVTPPSESPPKGEEGFWDLGSLPEDGANKMPEDEEEVEEMEIDKPTTTFKLALSASLAEELSKNLTSPGFTIGEGEHGPELTMNLDEPLIIDESDREENAPKRPHQSDPSDSDDSDTSAKNPKGKLTGKKVKKDSENTTKFGSQIDLFASSGETQSKEPPNSSKAKKSGLMAGAIKGAGNKGGGNKGAGNKGAGNKGGKTSNVKPR
>Tx1-5_BF_pol#LINE/L1-Tx1 1648-5142  [Branchiostoma floridae]
DPLTDLKMTDLNIVSLNVNGMKDRDKRQAVFDFCRTRKVDVACLQECHVSSLADKMYWSRQWGNKAIWSLGTNSAKGVGILFGPGISVVAHRSDTEGRVVSALVKLDDTNYNIVNIYAPSVPTQRVEFFAELHQYMFPNASLIVCGDFNCVLDPILDRCSGSSSSPRDNVRDVVELRGFCEDLGLVDVWREQHANQREFTWSSKSCETRSRLDRFYVSDPVHCSSEIRTFPMSDHDAVFLSVTHTPRVERGAGVWRCNTEVLKDGIFIEEFSERYEEWRARKGSHKCLRDWWEEVKNNTKDLLISHSKRRAKAATLIQRDLEKKIDMLRSCLNNGGTCPATVHDYQTAKEQLKKLLSDKLAGQRVRSRIQNFEKDEKPTRFFFSKERKRGEKKMVRELRTADGEIVTSREEILETFHDFYANLYSADSINSEDKNYFLDKLVPTLPDTDRIRLDQPLSLEEMEQAVKEMQNGKTPGSDGLPKEFYTQFWAIVGQDLLQVLNEGLEENQLSPSQREGVITLLDKKGDPLNPANKRPISLLNVDYKILAKTLANRLKVAVGEVIHTDQSCGIPGRSLEDSLSLLRDIVAYTNSTNSTCVLLALDQEKAFDRVDHSYMAEVLEKLGFGPKFQSWIGTLYNSVSSRVLVNGDLSSPIHIERGVRQGCPLSPLLYVLCIEPLAAAIRADPQIRGVKVPGGQEVKLVQYADDNTCVLSDQPSIDRAFHTIRRFESGTGSKLNFGKTEAVWLGRWRGRQDKPYPIGRWTSDSIIILGSPMGGERMAEEAWLQRFAKFKAKLDQWRNRKLTLIGKVVVCNSLAAATLWYTAPIFPLPKSIEKKLEKEMFAFIWDNKTELVARRTLYLPKEKGGLNLVCIPVKAQALLLKSVRKALTTPDAPAAKFTLYWLGFSLRRIDPASWSNNAPHSVDPPPHYAQIAKILQNVQQSNIQVEWAAVAVSSLYSSLLEAEDFVPRCVRENPSLDWPEIWQAILNPLLTNWERMVCWNIAHDGLVTNKKLYSWRKFSKTSKCPRRGCDEVESISHVFLECAHVSEMWTWLEWLIARKICPNFVLSNKFVLWGLAPDGSSMKTRRVLGALSAISKNLIWRSRGDAKHNKKHHSSAELALLLKETLAERLVFEFTRLGPAGFYTNWAEGYSWADVDVAHLSLKF
>Tx1-5_CQ_gag#LINE/L1-Tx1 130-1278  [Culex quinquefasciatus]
MEARVVRENTVKLKFGAQNRGPTNSEMFAFFRKQNWNEEMLSAMYKEDYSLLVKFRTKQLMLDVLAKFGNHVEFGYEDGSNVQLAVSAACGVFKYVRVFGLPPEVDDKAIADVFGKFGNIHQMVRERFPAETGFPIWNGVRGIHMEVTAELPAQVYVQHIRARVYYDGFQNKCFSCGSTEHLKAVCPKKQTVQSRLESYAHPPLDRGAKGSGQKAGLGAGQRAGQGAGQGAGQGSGSKNPSWNDMIKNFPDLPTNVQTCLTPEQATLNKPGQEQRKEGEQGEGWVTIPIKEKLRGRGLRQRKATDADSDPEDLFKVPDAPKLARLQGTRSRSLNSRKQKENSNAQVPVVLIEGSPSPSNQKTDTETSDGKASEEDAAMVDLK
>Tx1-5_CQ_pol#LINE/L1-Tx1 1375-4632  [Culex quinquefasciatus]
MQYSYKIATVNLNSTSTDVNKGLLRDFVYNHDIDIVMLQEVAYDNFLFIPTHFPLVNISEDNKGTAVLIRKSFNFKDVLLDPNGRIVSFVLNNINYVNIYAHSGSDKRRERNDLFTNRLAVHLNKPGTRFSVLCGDFNCILDGDDTRSNVKNFCAGLKNIIDLFSFKDIAKQLKKAAFTFIRGDSASRLDRFYGPIEFVNEVIDLQNIPVAFSDHHAVIIKVNSLKDHICAKGRGYWKINPSLLDSEEISKRFQDEYIKLKSRSTYNTDLNSWWHFILKPKIKQFYKTESWKINSATQLQKSNYLSELLKMAERQHKGENLTAEIAACKTKLMEIEYNRLNNYSKKLSNLNISEGEKISVFQVSKQINQGHDSQYLRLQGSDGIITEKNELDELIFQHFSKQFDIDNTSTNLRNEENPLDSISKSLDDDDREMMIDPITEEEILNILNACNKKKSPGIDGLTYEFYITHYDLIKKDLTKLLNGYLTATYSPPKEFTDGIVILIPKKGDNKQLENYRPITLLNTDHKLLTKIIAARIQEKMDKLIGPGQSACVKNLSCSDNLKDIRKMMTKAAETKRFKGFLLSLDLEKAFDRVNHSFLWDVLMKFGFPEQIINCVKKLYVHASSRVLYNGFLSKEFKIKASVRQGCPLSMLLFVLYIEPLIRRIYANTCGILAYDKILKVTAYADDLNVYVRNCEEFDLIIQIISSFSKFAKIRLNQRKSAFLRINNCISGPFLIPEADDLKILGVVFKNSWNSSIDQNYNKLVNDIKYRLTLNSFRKLSLVEKCWFVNSFVLSKLWYIAKIFPPKNIHLAKIKASVGNFIWNNQIFKVDRRQLYLSAENGGLGLQDPESKCKAIFIRNVLQSDCPSNDEYLLRYKYTSKLSRNSREWLETANMIKSNYNLHSCKLIYLYFIDEFKFKPKVEIEYPQMSWETAWLNLSSXFLQPEDRSSVYNFLNDLIPNRFKLFQYGIRKVTDNKCEICFEIDNNLHRLKSCPNVMEIRNWTEQILRTRMNVRCNDLEDILFSHIDKNSIQQKAALWITVHFVGFVFRKFPKCSLYVFKKSIRELRWNKRKQFVLHFGTLLNIC
>Tx1-6_BF_gag#LINE/L1-Tx1 220-1842  [Branchiostoma floridae]
MPQVTPSAYTKRRTVAITFLENRDAEFDDIVELLRKHKVDIMRDCAGIQSKERGWAEVVFETTSALNRVAPALAADRTIDVELYGNGVTLVTVIGASLELDDNYVRYQLREYGTIKDGRFLTYASRGFPNLKTGTRQYKMLLSKHIPNSIRVGGDNVSIRYNGQPKMCHRCGGQDHFVAACQAVKCTRCHELGHRAADCSAQIKCNNCKKEGHTLRSCPLSFANRLTMGTKWGSTAEWTQSDDQNRPGGSGAQQGNVGLKPRVELTSDDNESVKEDDDKEDNESVKEVDDKEEEDRDDSSDEGSDFEDARKSAPSKEEDMEVEDDEEEKGKEEERENGKEEETVPLKVAGDPSTGVIVGAKPTTPKVAGDAPPEVVTATKPVTPLSEPPQSGGFWDLEALGLPEDGANKIPDSLSEQADPQASLALALPESGDLIIDMETEGDVDTPKRPHSSESEDSSDGSNIPPKAATKGKKAKVLPEPQEKGFGSQIDLFPSSAEPSQKGKKPEAKNVTRKKSTTNSGKGKSGKPTKPGSKANPKPT
>Tx1-6_BF_pol#LINE/L1-Tx1 1885-5424  [Branchiostoma floridae]
TLMDWKLLTLNVNGMKDRDKRDLVFDLCKTEQVDVACLQECHVSSIEDKKRWTRQWGYKAFWSLGTNSSRGVGILLSSRMEFVSSQTDLDGRVVSILVKADDTQYNVVNVYAPSTAAERKTFFEDLHQYMHPNATLIVTGDFNCVLDCSLDRYSDSTTTPGNDTQDVVELRNFCADLGLVDVWRDQHPDQKDFTWRSKATSTRSRLDRFYTSTSNLGPCVIQACSFSDHDMVSLSVPPTQDTERGPGVWKCNVKLKVLEDPLFANDFEEKYKSWQESKQNCENLREWWEEIKSNTKDLIRQHSKRIVHSTNLVERDLLREIDILRSRLNVLRGCSDTMERYSEAKEKLTKLRLDRLSGQKIRSRIRAFEQDEKPTRFFFQKEREKGKKRLIHSIRNATGEVVSSKNGILETFRTFYSRLYEPDQINTQDQQYFLDKLDTALSQVSRDALDKPVSLSELEDALKGMANGKTPGSDGLPKEFYRRFWNLVGQDLLDVLNEGLEEGLLSPSQRESIISLIEKSGDPLDPANNRPISLLNVDYKILTKTLANRLKVVIEEVVHSNQTCGIPGRSIVDSSCLLRDIISYVNDKNLDCAFLALDQEKAFDRVDHAYMANVLEKLGFGQNFCKWMKVLYEDVSSQVLVNGNLTSRLSIGRGVRQGCPLSPLLYVLCIEPLAAAIRADPQIKGVQIPGGQGQEVKLVQYADDNTCVLTDQQSIDRTFYLIGRFESGTGSKLNMGKTKALWLGGWRGRQDKPYPMHSWVSTHLKILGNPTGNGSRLAEEAWLQRFAKFKEKLDKWRHRKLTLIGKVEVVNSLAAARLWYVAPVYPLPRSVKVKIEQEIRRFIWDGKTPLVKLDTLALSKDKGGLGLVSVAHKADALLLKCVRKALTDPQDPGSRFAHYWLGLCLRRIDPESWSNTTPHSFNPPKQYEEIANLLGDIARKGIVVDWTSSTTASLYTALLEAEGTVPRCVQKDPLRDWERVWKALQNRLHSNWDRMISWHVAHNSLLTNLKLSGWRNFHPDSACPRQGCSLDESVPHTFWECPVVNGLWDWLGGLIRRHILPGFQVTKSFALFGTVPPTTPKKTRLVLEAASAIVRSLIWRTRGDSKFQRSHVTGPDLVDKLKRMLKDRLLFEFQRLGPAGFYSTWAEGFSWVSIDLTQCYVHFWWSSRTDLPILGRSET
>Tx1-6_CQ_gag#LINE/L1-Tx1 2-673  [Culex quinquefasciatus]
YYDGLKNRCFHCKQEGHVKSSCPKLVTVSPGSGXPRSYSSVAARGTPVAPPVLEVPAFKPQMQLLNSKRNQSVPTPAPPQVTVPVTEAAISQREKVPADGAALPAVTPATSGSSVAGSSKTPAEILKVLQSIAKETEEPMDTSLDKVAPKRPADPPSDGEGGVSEEGGSEEGGTAEGGDEGLGGSGVDADGFKKQGGKRSNKAKKSKKVIKTIETRADAKASK
>Tx1-6_CQ_pol#LINE/L1-Tx1 761-4009  [Culex quinquefasciatus]
MVFTRSICTININSISCIAKKLLLRDFIFNTDIDILLLQEVAFESFGFLHSHTAIVNFNNDSIGTAILVRKGIEFSNVLMGSCGRILSVSIDNFNIINIYAASGTNRKKERDILFSSTIIPHLSSVKNNIIAGDFNCILLSSDSNSTVPNFCKGLESLVKSVCLFDVEKEKNKSVQFTFIRGISMSRLDRFYAPKDFLSKVLSVSTAAVPFSDHHAVLIKYQVPDGIPLKLFGRGFWKINPSLIDNSDIHNKLITVLNDLETREMFSRDLNKWWNQTVKVKIKQTYKSESFHLNQQIHREKNFYYTCLKEIIIEQSNGRHVYDEMIFIKSKLLQIEHDRLKNFSLKIPPTSLASEETLSLFQISSSIKKNYSDNLLHLRTTKGITSDYKELKPCIENYFTKIFANESSNNSNNNFPVLNNINKSLNLQDSNMLIRPISKDELNTIIKQSAKKKSPGPDGLTYEFYEHFFDVLSDHLLKLFNSYLRDGVCPEPSFSEGIIALVPKNGDQTDISNKRPISMLNCDYKIFSKILANRLHAVLPNLIGPGQAACNPEKSCIYNLRLIRNICLRAEQTKRLKGLILSIDLEKAFDNVSHDFLWAVLKKYGFPNEFITCIQNLYKHASSKILFNGFLTNTILILNSVRQGCPLSMALFALYIEPLIRLIYDNVQGCFIANTFIKVIAYADDLNIFVLNDHEFDTVLELINYFSIFSKIKLNARKSHFMRLNNCRSGPHMLEEKMSLKILGIAFYQDFSRTVDSNYNSIIPKFKNVLAQHSKRKLNLVQKCIVLNSYALSKIWYIAQIFPPSNKHLADIRKSCGWFIWXNFFKVDRNQLYLPLEKGGLGLADPEVKAQSLFVKNIIFAFNDDKDSFMLAQTRNKSLTRNARAWLDLASELSHFSYLDSCKSFYNFLLQKRNTIPKVERENPEFSWEIIWENISKXXLSSYAKEALYMVYNNLVPNRSKMFRLKVRGVVDNLCEICNNVDSTEHRIKNCKNTRPVWEWVEEIISKRLKLVVEDPEEIMQMSIVTSMKRKACLWLVAEVICFNLKNTNNATVKDFQHHIRKIRWNFREVFKKHFGNLLNIC
>Tx1-7_BF_gag#LINE/L1-Tx1 85-1389  [Branchiostoma floridae]
MRRDNSICVTYTAQKDKLSEQETWALLDSVGIPTSSLQTVQALNATSFDLTFRTLHDRKLYGGKLSALQYLDVRVYGSAETVVTATRIPDEFDDNHVRYWLSRYGQVLASRMTTYRDRPTVRNGNRQYKVILKPGANIPSSWRLADGRLAFFRYVGQQRTCLKCYQEGHEAAQCTVIFCNKCQLIGHTSAECSNQVVCNQCGKEGHTARRCPTSYANKLLPDNKWTSGPAAEATVASAKTPGQSEQSQVNETVSSGKSQSEQTNETDSSDSGSEESGEDDSAEEFASSDELTEKERELERELLLEATQPSPSSAERIEPNGEQETTHPRNKKRKKRKGKAKNGRKQNNEVEEPQTPVKNVVAKKKAPHTGDPSSDAMEVDQQTSKRPAPSDEEVSPKRKSEPSTVTKGPHSPGYDLPLSGELAIDEFTSSGESL
>Tx1-7_BF_pol#LINE/L1-Tx1 1389-4895  [Branchiostoma floridae]
MMPQNMHRLNAFFMLTMVVIATLNVCGMRNPNKRKQVYDFCRQHKFDIVCLQESHITHVDETTKWEKEWGGQALWSLGTPNSRGVGILLSPSLDLKITKKFCDDEGRVVSAVLADGTRSLRVCNVYAPNDAAERSTFFRGLGNFLSNSESTVLCGDFNCIESPSLDKRGGNPSRSSGGSKILKNLCASHNLHDSWRQLNPDGRVYTWRQPDNAVACRLDRLYSSNNLPVSGHFFRPAYFTDHDCVGIDVLPTAKKKSSMWKCNVSILKNKEVQSDFTASYKDWQTLKLGYPSLRSWWDDVKDRTRSLFIKHSCKIAKDKREARYQLNNTLGDLTNQLNAGAVSPDVLRQYKATKDALSELATSEAQGAIVRSRIKQFEEGEKCTSFFLKQAASNGKKKRICAIRDSMGQVVHEDDEIANVFYEFYAELFAEEPVDPVASDQLCDNLENTLTPEEAQALEAPLSTDEMLNSVRSMQNNKCPGSDGLPKEFYTTFWHLIADDLLKVFQEALDAGELSSSQKFGVLTLLPKKGDELDPKNRRPISLLNTDYKILTKVLNNRLQSVIASVLHPDQTCGVPGRSIQCNLRLTRDIVVYANNNNIECAIVSLDQAKAFDRVNISFLQQTLARMGFGPSFRKWVSILYNDISSSVLVNGSLSSPFALTRGVRQGCPLSPLLYAISLEPFAATVRKDSEVHGVKLPGGYEAKMSLYADDNSAFLTSDDSIVRLFDLVGLYNRGSGSMLNLDKCEGLWLGKWRNRPDTPVQIKWTSGSIRLLGGVFGNIDMPLTNWKEGKRKFVETLQGWGARSLSFTGKVTVANSLATAKLWYLASVFTPPDSVMKEINTALFAFFWDKKREMISRNTIYLPPEKGGWGLIDIAKKAKCLYSRPFSDIMSQEDLPWVQLARYWLGIFIRRFDPSTWSNNMPHSPNAPPHYKALQSLVSELVEASPSKKWDPGCTTRSLYDSLLKKDAHIPSVCLNKRSVPWPLTFQSVQHPLLENRLKDTAWLVAHHALKTNALLCSNWGYIRSGTCPRQNCKGHETVEHAMWYCSEVLLTWTWVEGFLRRWVMSDFRINKQMVIYGILPPSWKKCKIDAITYTLAVARKRIWSSRCEALFDKTFSTHVEMVPYIKECLRSRIKLDFVRLNETTFMSLWCSVQWARVDGGKLRLRF
>Tx1-7_CQ_gag#LINE/L1-Tx1 155-1504  [Culex quinquefasciatus]
MATFEEARANSLRIYFGPGKKEPLDHGIFNFMKQKMRLNPNSLLSMYKESKENCVYIKFKTEEMLTNTLLDLPESMDFEYNKYESTKVTFSSASTVFKYVRIFNLPPEISDQEISTVMSKFGVIQRMVRERYAPETGFPIWSSVRGVHMEIKQDIPATIHVRNFQARVYYDGLQNKCFICGSKDHVKVNCPKKSKVNXRMEQNGSLSYSAVTAQPPLWLGRGSTHKAGESGGEGQMVVLNNFFGPAKPSLLVPXKLPEVPSAVKPIDQAGLGSSSVEQIVLPMSEPDAEMKETTTAEGVLTGGGVSSLAVPIVTDGAVKEAQGEEEFQLVQGRKKKRKEEMRSLSADAPAKPGSGMIFIPPSNLSAAQSMETRGRSKKKEDNKERSRSRSLRDRDTEGKGDTRGKGDVKGKGDVKGKGDTRGKGDVKGKNKLGGNGEGEGVDANLEENL
>Tx1-7_CQ_pol#LINE/L1-Tx1 1638-4898  [Culex quinquefasciatus]
MNFTLKIASVNLNSTTTTINQNLLRDFIWNQDIDLVFVQELCYQNFSFIPSHFAIINLNQNGMGTGILLRKSFEFNNVVLDPNGRISSLVINGINYINIYAFSGTNKKKERDELFLNNLTVHLSKSGIEYSVLAGDFNCILNSSDATGATKNVSAGLKRLVESLQWKDIFAEMKQNEFTFFRSGVASRLDRIYGPSRFVDLIIEAKTISVPFSDHCAIVLKIKTDSNSFCLKGRGYWKINNSLLFDENISHKLSVEYQSICNRSSYFNDKNQWWNSIAKVKFKQFFKGESWAINKYILDRKSYFHGVLNDLHRRRCLGEEVSKDMFLVKSRLMEIELDRLKHYSNKLNNFSLLQGEVMNIFQVSAQIKKFSTSNNLKLKDGNVITGDCSIMKQIIFDHFSEQFKKSLDNALDGITDPLEGVTSRLSDEQQRELTRPITVDEMFTVLKLCAHKKSPGPDGLNYEFYLKHFDLIKDDLVVLFNEYLSGTKKPPRDFTAGIITLIHKGNDKNDLNNYRPISLLNCDYKLFTKIIAMRIKLHLDDLLGCEQSACKSDRSCSDNLKDIRRIMLRANDSKRFKGALVSIDLQKAFDKVDHTYLWKVLEKFNFPDSLISCIRNLYDSATSKVLFNGFLTNSIKIESSVRQGCPLSMILFVLYIEPLLRKISDGIAGVLIYDKFIKTIAYADDINIFIRNDEEFDLLIQILNSFESFGKIKMNFNKSVYLRINRANFGPQMIREVNSFKILGIHFSNSISESINLNYDKVILNVKHTLHLHGVRKLNLVERGWLLNAFILSKFWYLAQIFPPYKKHIDIINSLVGQFLWNGFIFKTARDQLYLDYDAGGIRLVNAEFKMKALFIRNILYPGGNVSENYILVYSKQHQLPLCFRQWIEVARLCKNDSLLDSSKAFYKHFLNQENFIPKVKVDFPQFQWTTIWKNLNFNFIGSDEKSRLFAFLNNLIPNKEKLMAYNIGRLSNNLCDICNGIDNNGHRIMECPQSRIISNWTKNKVEKISGIKLVNLEDILSFEIDENKKSEIAALWLCILAISFNLKCYPGPSLFVFKKEIREMRWNNRLIFNKVFGTHLLRLGM
>Tx1-8_BF_gag#LINE/L1-Tx1 1-498 (fragment)  [Branchiostoma floridae]
TPLPSKAVSNSINALEQYSRRNSLRIRGIPEVDKETGEMCVHKVVTFCRVKLGLDLQPQCIDRAHRVGTRKENASRLMLVKFVSWQDRNRVFRARSKLKGKRDEHDRPLLVLADLTRENLTIFSAAFTAKKNGRIKDAWVDANCRIMVTLADKTTKSIDSVEELT
>Tx1-8_BF_pol#LINE/L1-Tx1 1372-5139  [Branchiostoma floridae]
MSKVECRISSYNCNGLGDFHKRMGLFTWLKDKPYHLYCLQETHTTVRDEKRWQNEWGGQIYFSHGTSNQRGVAILIKSSASVQVHQVKTDESGRWIVLDIEVDNLHFCLANLYAPNDDCPSFFKELEEAIDTLEISNEHLVVVGDFNTVQNSAMDRSGARLRNYHPNALEAISELKGKFDLYDVWRFRNPNVVRYTWRRGLYASRLDYFLISFSLLNRVTKCSIADKLRSDHNLITLSFVTADFPRGPGYWQFNQSLLDDKLFLVQTKQIMSEFFENNVNTANPQVVWDAAKCFFRGHCIKFSSWRKKQYLMKEKELIDEINMLQSQIDSAASPPPAQLEELNHKQKLLESLYNERLNGILLRSKSRWMELGERCTKYFINLIHRNYTRKNIQRLKRPSGEVTCNPKDILSDQVNFYSALYSFEDIPMPLSDVNCDGFFPEDYDKRLSDEQQQLCEGLVSEEELKNAIYSFQAGKSPGLDGIPVEVYKNFFDVFKKPMLTCFNYSFVNGYLSETQRKGLISLLLKKDSKGIDKDPTAMGNWRPLTLLGCDTRILSKCISLRIKHVITDIIGEDQTGFIKDRYIGDNIRRLLDTIEHYDQENKPGLIFVADFKKAFDSLRWDFMFKCLEFFNFGPQLIKWVKVLYKKTASCVINNGYISDPFNLYRGVRQGCPLSPYLFLVAVEVLAIKIRSNHSIRGLRIYEKTTKISQYADDSNFPFEPKLESFYALLSDLERFSNISGLSLNVDKCKILRLGPLKLSNFRLPTHLPIQWVDGDVDLLGINIPVDLNLITNVNFEPRMERLDRLLRPMKNKYLSLYGKIVIINTLVVPQFTNLFQVLPSPNDSFFKEYEKKIFSFIWDDGPERVARKVLYNEFENGGLNLKNLRAFNTSIKASWVPKLYSHPEWFSSWVTVFHPQLSHSLFPFYQLSSGKNLCLKGFFSEVFMAWFKFQPTTPANIRQQVICLNSNIIIDGKTVCMTSFLNRNIYFINDLLSPNGNFMSYDEFSINYPNACDQHRYLQLISAIPGKWKKILSTEKRKDLVCLPFQKNYKWLRNIKINKSMYIYFLTSMNEVSVAHNTRLSWFYYFDKDIPWREVFTNLYRCTIDPGTRYFQYRLINKFLPCNRILHIWKLVDSNSCSFCHDDVESYIHVFWECPHVVPFWNEVESWLQVQTSIDCNLNPFIIIFGDTCQDTPPLKNLIILLGKVFIFRCRRLKTINFQAFKKLISTFEKTERLIASRRGKLEKHRGKWGTLCLI
>Tx1-8_CQ_gag#LINE/L1-Tx1 149-1336  [Culex quinquefasciatus]
METGVRKNTLKLCFQQGSKIPSNLEVLKFVTGTLELGAADLHSVYKDENDGSFYIKLMDEPTFTEYCGRLEELYMFRYDDDSRSPVTLVVASRIFRYVRIFNLPPEIDDKTIAQVLGQFGTIRQHVRERYSPECNLNIFNGVRGVHMEIAKEIPAGLFIGHFRARIYYDGLKNRCFFCKQEGHVKSNCPKLANSSSGSGGSRSYSTVTAQGRPVNAPYLSVPPMTPVMERLVKAVQEPVPSAEGDKSATSPPAGGQGLSGPATPPTEATGTPAVIEEPQVSAETNQQQELENMDTGDEGGHQGVGSGTGDEGGIGDHNRGAGTGKGGGLLGVKRPAEPSSDPEANSSEGPEDSTGQLPFKEVSGGKKNKRSKKGKKDQSKPLSTISTRSLLKPAK
>Tx1-8_CQ_pol#LINE/L1-Tx1 1396-4653  [Culex quinquefasciatus]
MFLRSICTININAINSLLKKSLLKDFIWNSDIDIVFLQEVAFEDFGFLPSHTAIVNISTDNKSTAILVRKNINFDNVLINPNGRLSSILIDDINFINVYAPSGSNYRNERNSFFTFDIIPHLSFTKKNIIVGDFNCILLPSDSNSSNKNICSGLQKLVTSLNLHDIEHKINQKTNFTFIRGDSKSRLDRFYAPLELINNVRSINTSAVAFSDHHAVILKYKVPDNIPLQTRGRGYWKINPSLIMNEEITADFKTLFENWKKQNMYINNFNFWWNDSTKSRIMKYFKSQSFLFNQQIHREKNFFYTCLNEIIEKQSVGENVYNELCLVRSKLLEIEQNRLNNLSLKTSSGSILTDERLSLFQISSRIKNQTENYSFKLRINGEITNEHCRLKQFITSHFNSIFAADNSDQNNDNVLSHVHKKLSVQDQMSLSKPIDKDELIFVLKEVAKKKTPGPDGLTYEFYSHFSDILLDDLVILFNSYLVDGVNPSRDFKKGIISLIPKKGCDQYEISNKRPISLLNSDYKLFTKILANRLKPLMKKIIGPGQTACNIDKSCVDNLKTLRNIIIRAGQTKRFKGLLLSLDLEKAFDKVNHSFLWDVLKKFDFPEPFINCLKNLYKEATSKILFNGFLTDSIEIKSSVRQGCPLSMALFVLYIEPLIRLISDNVRGCFIADTFIKVIAYADDLNIFVLNDHEFDTVLEMINYFSIYSKIKLNVNKSHFMRLNNCVSGPRLIPEKDALKILGVYFENSFSRTVKLNYDSVIQKLKHCLKLHSSRHLNLIQKIWILNTFILSKIWYLAQVFPPNKVHIAQIYSSCSMFLWNNHFFTVTRNQMFLDVSDGGLGLVDVDLKSKALFIKNILFSYPDADDPMDRFMMAQCQNTSLTKATREWLSEVSRIALYQDLITTKSIYRFLQSEKIFVPKVVQENPDLDWKLIWENISSNFLTSNSREALFLVMNDVICTKSKQFRNNVRGVENNICDFCNSIDTTEHRIKYCTGSVIVWIWLKNVLNVKLKIMIDDPEEILATDIDSKDSRLKAALFLIGEVISFNLKHYGTPSLGKFEQSLRDTRWNNKKLVKTQFCNFLNIL
>Tx1-9_BF_pol#LINE/L1-Tx1 655-4449  [Branchiostoma floridae]
MNTTIGSYNVNGIANPRKRREVFNWLKEKNYDIICLQETHSSPEHEMAWKQDWHGEVFFNHGTTNQRGVLILCKENLKFTVNNCTKDDDGRLLIIDISINDLNFCICNLYAPNRDNPDFFDNIEKLISNYNHGNFIIVGDFNTVQNAKLDRAGRNPAVYHPNAQQKINDLMFALELVDVWRYKHPNTVRFTWRRGKQASRLDYFLVSFSLLADISNVRILDRLKSDHKIISLNIQTVKHPRGRNYWKFNQTLLTDVNFQQKTEEFIDEFFRFNIGTSDPLTVWDTFKCCFRGHTISFASKKRKEFISKENDIKKHIEQLNEKLDETDEPSQTVLDELSSLQSELEILYEQKSDQMFYKQRADWMEFSDRCTKQFLDLGRRNSSKKNVINLKTTDGENIQDPKRAIEEIKSFYHSLYSFSDPPKDLDDDNCEPFFPGDLHVHLDTEQKNSCEGLITEKELWEAIDSFKEGKTPGIDGIPVEVYKTFFRNLKNPMLHLFNHAYESGNLSDSQKEGLITLLLKQDSNGEYKDPTALNNWRPLSLLCCDVRILSKVISLRIRKVISNLIHKDQCGFLQNRFIGENICQITEIIQLYEKEKLPGMIFIADFEKAFDKLRWDFMFRALRFFGFGESFIRWVSVLYKDITSKVINNGYISTPFKLSRGVRQGCPLSPYLFILCVELLAVKIRSNNNIKGITLHETEIKVSQFADDSNFPLQPTLTSLLALTKDLNNFSEISGLDPNYSKCKILRIGTLRNTHFTLPCNLPVQWTDGPVKMLGVGITGDTNKLTKNYEDRLIKIDRTLLPWKMIPMSLYGKVTLINTLVVSQFTHLFMSLPSPEKSFFQRYEQKVFRFIWNGKPEKIKRKVIYNTYDKGGLGLIHLPTFDRTRKASWVPRMFCQHNSNRKPLLDTSSVVFSRHLYPFLQLSLDDITSMRPLCTISPFFKDVLKAWLSLQYKPPETYKDIQNQIIWCNSNILVESKPIALETPMSCGMIHINDILDLDGKLLSYDDVIKKFGKVIGRMGYNSIVSAIPNDWKKELLKHSPTVGPIIPSAAHYIWLKTCRIHKKTYSFFLQKNNIAMSPTNIQSYWEDEFNVPLPWHHIFKLIYKTTISPRLRILQYKIVHKTLATRKMLHRWKIADSPLCVHCKLEEETIRHIFWECPRVHELWTKTQKWLESIFLQKYNFDAMNVIMGEFRLDHPPILNMIILLAKNFIMHNNQQHLSMKQFMNIIKTHEHIEYIIAVRKQKLNYHLKKWETLRLALFPTVP
>Tx1-9_CQ_gag#LINE/L1-Tx1 174-1310  [Culex quinquefasciatus]
MEPKREFTIKLRFGAEARNPNNAEIFKFFNKQGWTSEDLSAMYRDDHSVFVRFKTEPMMRGALTKLGPXVKFDYDNGTSLEVXVQAAAGTFKYVRIFGLPPEVDDRHIVTTMSKYGAIQQLVRERYSVETGFPIWNGVRGLHIELVSEIPAQLTIQHCKARIYYDGLQNKCFGCGALDHLKATCPKRNSVNKRLAAAATPAGGSFASIVANGTPAEPVGASPASGMVVLNPKPPAPISKPNLEDHVEPVAPEFTAPAEQLALPQGGGDEVAEESGDQSMDEDDDNQQNEGEVSPNGAASMETDDAWTEAKGKGKKGKGKRGRPRKPIESDASESDAIGGKQFIVPAQGADLLAALALPKPTGPRTRSASEQRSPHDNK
>Tx1-9_CQ_pol#LINE/L1-Tx1 1480-4747 via tfasty with IseAg1_pol, 1 frameshift. [Culex quinquefasciatus]
MNYPYSIATINLNSTNTTVNKGLLKDFVYNHDIDIIFLQEVSYEDFSFIFTHNALVNISLDRKGTAILIRKTFDYSDCIYDPSGRVISVIVNNVNFVNIYAHSGSNMKKERDNLFTEALTVHLNKPNSASTLIGGDFNCILDAADTKGPYKNFSCGLKSLIDLFAYKDIAKLRKENQFTFYRGDSASRLDRFYAPSSLVENVVACSTLPLAFSDHHSVVIKIKYLNGNLLTKGRGYWKVNPSLLSMNNITEKFKQEYENLKQRNVYNYNFNRWWNQHLKNKVKQFYKNESYNLNLTVRNSKSALLSSLNNLSKRLVEGEDVADEMSIVKSKLMNLEQNRLKNLGEKMPSSTIAEGEKMTVYQLSNSIHRGSSFGLRLKDISNGNIVTESTKIGPMVHSYFSEQYNNVSDLVDQDEADVILQNVTKNLTIEEKQSLEEYISVEEIAATLKLCNRKKSPGPDGLTYEFYLTHFEILKFDICKLFNAYLSGELIPPKEFSEGIITLIPKKGDTTLLQNQRPISLLNTDYKLFTKIIANRIQSKIGNLIDIGQSACIAGRSCTDNLNDVRRILTKSIESKSFKGFLLSLDLEKAFDKVSHNFLWIVLKRFGFSDKLISCLKCLYGKASSKILFNGFLTEEIRIRCSVRQGCPLSMILFVLYIEPLIRNIDQAILGVLTFNKFLRVIAFADDLNVFLRNNEEFDIVLNIIDSFSQCSKIKLNKDKSCFWRINKCTGGPFMVKETENLNLLGVTFKSNWSNTIDYNYEKLINGIKYRINLNNFRTMDLIQKVWYLNTFILSKLWYLSQVLPPKNKHIASIRKISGMFLWKGCIFRVDKRQLYLDMDRGGLGFIDPEAKCKALFIKNILKETDDNSQDEKYLLNFNHLQRLTRNGREWVEESNRLINDNIQIKCTKQLYRTFIDQYKFTPRIETEFPLINWNILWNLMNKPYLLSHDKSKLYLLFNDLVPNKRKLLHYNIGRVENEICEVCGEIDTNLHRVRSCLAGKEIRDWVFGIFRKRFAVSAKQIDDLFFWRIDTESFPQRAAMWLAVHFVAYCVDKFPRFNLFIFQRSIREFRWNSKGLVKKYFEDYLNIC
>Tx1-10_BF_pol#LINE/L1-Tx1 1-3609 Fragment  [Branchiostoma floridae]
SFNCNGLGNFYKRRGVFTWLKEKPYHIYCLQETHTTALDEAKWQNEWGGKIYFSHGSTRQRGVAILMKNNTSFQVHQFKSDDSGRWIILDIEVNNFHFCLVNLYAPNDDSPSFFKELEEHIATFDISNESLIVVGDFNTVQNALVDRSGVQQRNYNPHALDAISELKGKFDLHDIWRFRNPKSVRYTWRRGIQASRLDYFLISFSLLNRITKCCIADKFKSDHNLISLSFVTTDFPRGPGYWQFNLSLLNDKTFCLKTKTVMTEFFQNNIGTASPQIVWDAAKCFFRGHCIKFSSYKKKQYLIKEKQLTDEINALQCQIDNTPSPSQAQLDEMTCKQNSLETLYNERLNGLLLRSRSRWMELGERCTKYFFNFIHRNYARKNMQRLTRVSGEEILDPQEILSEQVKFYSNLYSFEEPPVPLTDTYCSTFFPPQYSKCLSHAQQQDCEGLITEEEVKHAISTFQNGKAPGHDGIPIEVYRVFFDTFKVPMLQCFNFAFDNGHLSGTQKQGIISLLLKKDSKGVDKDPSIMGNWRPLTLSGCDTKIISKCIALRIKNVISDIVHQDQTGFIKDRYIGENIRKLIDIIEHYDDEEKPGLIFIADFRKAFDTLRWDFMFKCLEFFRFGPELIKWVKVLYRDTSSSVINSGYISKPFQLSRGVRQGCPLSPYIFILAAEVLAIKIRSNQSIKGLRVYGKCSKVSQFADDANFPFEPKLDSFYSLLSDIDGFSNISGLELNAEKCKILRLGSLKHSKFRLPTHLPVQWVDGDVDILGVHIPADMNLIVETNIEPRLDKLDRILRPWKGKSLSLYGKITVVNSLVVPQFTHLLQTLPSPNDSFFKRYEQKIFSFIWEDGPEKVARKVLYNSTENGGLNLINLRVFDQTLKASWIPKLYFHPEWFSSMMIHYNPRLSLQLLPFFQLSSITFLKLKGFILEALAAWCKFQYTESETPVSVRQQILWNNSSITIEGRPILFNALLNRKIIFINDLLSEDGHLMSYHDFCSIYPDTCNQLRYQQLIASIPSKWKTLLSIEASKNVICVPHQKNYKWLSQVKINKSIYNFFLLSMNQTTVAHKIRLSWFDYFDTPIPWKSVFINLVKSTIDPSLRYFQFRLLYKYLPTNRMLRIWNLIETNLCSFCNSDEKSYVHVFYECIYDVSFWRKVQEWLLQECGLDIHLTSFLIIFGDLSTNASSVTKMIILLGKLFIF
>Tx1-10_CQ_gag#LINE/L1-Tx1 156-1481  [Culex quinquefasciatus]
MAESDLKTNSLKIRFAGNCREPTEPEIFDFMRGKMKLKADHLLSMYKDKLDASVIVKFKNEEEFKATLARLPGTMEFAYNKYESTQVRLSPANAVVKYVRLFNLPPEVDDREIGTALSKYGRIQRLIREKYGEETGFPIWTSVRGAYIELKEGTEIPASLHVRNIRARVFYEGLVNKCFLCGATDHIKAECPERKTVNTRLDASRGSYSAAVAGGAARWFKQKMAEPTLSKEPEAXMTNLNALFPQTALMKPQQSMVEVKEKAPPAGPSSGKQIAAAKETDDLWSQALAAVADQLQQPQQENKQDGDGWRVVPPKKEKNKKNPKKVRSSSAGSSGASGSVDPKFLRPRTPRPTAISDAQRNRDRSRSAPKNGDSKKPKIIVTAETNEEAKQPSSGEMDVDGVDEMKVAGSGGGQGAGGEQGTGGEQGCGGGSFGRRFTVXW
>Tx1-10_CQ_pol#LINE/L1-Tx1 1570-4839  [Culex quinquefasciatus]
MMNFTYKLGSVNLNSSNSLVNKQLLKDFIYINDLDVIFLQEVSYDNFSFVPSHAPIVNLSDSGSGTAILIRKTFDFSSPLLDPNGRISSVIINHINFINVYAFSGTNRKKERDDLFLDNMTIHLNKAGSKFCVVGGDFNCILNAFDTAGSNKNYSTGLKRLIEIFNFKDIAVELRKHQFTFYRGDTESRLDRFYAPSAFLENVLDFTTLPVAFSDHHAIIMKIKSCSDEFSLKGRGYWKINSTIANDSSVSDQFSECFETWKLRHQYTDDKNLWWNVIAKKKFKQFYQNKSWELNQQISNEKSYFYRKMLEWMDKKNRNEETLLDIKMIKSRLYEIESNRMKHLGNNLNNGNILQNEMVNLYQVSAQVKRFQSSSNLRLKDGNILVVDINVLKNKVYQYYANLFTEDNNSSQQLSAEDPIHCLNSSLDQDDRDDIMRPITVVEIEEILKNCTRKKSPGPDGLTYEFYINNFDSLKADLVLLFNGYLSGNMRPSKTFTDGIITLIPKKGANSVHLDDYRPISLLNCDYKLFMKIIAERLKFYMGKLLGFGQTACLPNSSCIDNLKDIRRILTRACESKRFKGCLVSVDLNKAFDRVNHSYLWKVLEKFGFPTQLIDCLKNLYANAASRVLVNGFLTPEINISSSVRQGCPLSMILFVLYIEPLLRKISVTIPPVLVYGKFINVLAFADDIVVFVKNDYEFDNFIKVIDTFSKYASIKLNFAKSVFLRLNNAKVGPQKFKETEALKVLGVIFEKSWSSTVNNNYKRLVTNINLSMLQHNVRKINIIERCIVLNTYILSKLWYVAQLFPPANSHLAQIKSACGKFIWKGYIFKLDRKQLYLDFFKGGLRLVDPEAKSKALFLKNIFYNLNAHGTQPDESYLIDLDSPQKLTRNAREWLNEGKAVVANHDLNTVKLMYNYFVSLNSESPAIEGKLSLKWTLIWKNCSESFLEMKDRAKMFGFVNDLLPNKEKLLSYNIGNLTSAVCDKCGGIDSNSHRIKECPRAKEVWEWSSRIVQNRYKMNVVDLEDILQLDLDEKSESEKAALWLAVKTISYNLRVSEPSLFVLKKEIREHRWNERKNIRIIFGNSLNIC
>Tx1-11_BF_gag#LINE/L1-Tx1 285-1097  [Branchiostoma floridae]
MEALLIKLDELKAENATNFTKLNGNFDEMKNDMKKMGDILCCHEEKIKSQDELIKNLQGKIESLEARQFHSEQYSRKNCLRVWGFPDTYDQKDLPNKFVEFVKEYLQVNILPGEIDNIHYLGGKGKNRHLIVKFATFLAKRKVYEERKALKGKKNGEGSFISIRPDLSPASRALFHQAKQLITNGGDNNPLSAVWVTIEGRIWATRGDRRVLLTCQEDLEQGVAGDTTGEFVVQRRKTFAKRQASRSPEQQPDVKKTNVFGPLAQEMDCP
>Tx1-11_BF_pol#LINE/L1-Tx1 2087-5890  [Branchiostoma floridae]
MTQPKVEICSYNCNGLGDRRKRNEVFTWLKDKSYKMYCLQETHSTQAVETEWRSEWGGDIFFNHGLSNSRGVMILFKANISYTVHQTLSDNSGRWILLDVSLESTRFCIINIYGPNSDDPSIFTNLETTLQSCIDPGSSFIAVGDFNTVLNSDMDRTGHRFSSYHPKCLQAINSFCANLDLIDIYRHKNANERRYTWRRRFQASRIDYFLISFSLVSSVQYVKIEDSFRSDHSLIGISLITSPIPRGQGFWRLNQDLLSDPVFVRETSDFIKYFFLCNKGSANPHIVWDSFKCCVRGHIIKYSSWKYKQRKKAENSLVNEICRLQVELDSVPNSTTFDKLQEKKHDLEILYQIKSNNMIASRRAKWMEQGEKFFMNLVTRDKARKNMFRFVTTDGQVKTNPLHVLEEQANFYQNLYSFEEPPMSVDDDVFEPFFPTSNRVSLSPEQRGGCEGLITEGELKDAINSFPWGKGPGLDGLSVEFYKVFFNCLKQPMLECFNFSFSEKQLTGTQKEGLISLLLKQDPSGQDKDPSYIKNWRPITLLNCDTRVLSKCLALRIKNVISNLISYDQTGFLQGRCISDNIRRILEIMEYYEKNKLPGLIFLADFEKAFDTIRVEFIVKALRYFGFGDSFITWIKILYSDISSKIINYGYISKPFNLSRGVRQGCPLSPYLFILGVELLASKIRNNIEIKGLDTFGITSQLSLYADDSSFPLAPELGSLYALVKDLEIFNLLSGLRSNFDKCRILRIGSLSGTNFYLPCSFPILWTDGPVDILGIHIPRHMSDIVHSNFDRKFEKIDKILMLWKSKSLTLMGKIILVNTLIVPQFIFLLTSLPTPPSDFFDRYEKKIFKFLWGDGPERVKRKTLYAVLDQGGLKLRNLRAVDFTLKASWLPKLYLNKEWFCSKLILLSNSIFRTDLFPFAQLNKKDFESLLGKISPLSTFFTHVIQAWLKYQLRPPEEAVEVKQQLLHLNSNITISGKPFFSQVFLSRGVIFVNDMLDAENSFLSYVDFVTKFGVVCPEFKYNQLMSAIPPFWKAKLKLNSPSLGVCLPVCRNIGWLRNCNINKCLYQFFMNEASLWGSSERIKLSWEEYFDTPLPWQNIYSLPYKLSIDSYTRIFQYKLLFKFLPCNKILYLWGLIDSPLCNLCNEEEETVVHLFWDCCVTSNFWRQVDEWFFNINGTHLHINALSIMFGISSDRCPVLSNLILLLGKIFVFKNRKHSLNLSAFISFVSYFYKLEKNIAIRQGKLLKHRGKWGNLNNLFSVSTIS
>Tx1-11_CQ_pol#LINE/L1-Tx1 3-1280 Fragment [Culex quinquefasciatus]
LYENIFGCLIANNFVKVVAYADDLNILVRNNHEFDTVLQLVSYFSIYSKIKLNFAKSQYLRFNGCLSGPHQIKEVESLNVLGVLICQNFNKLVEINYDSYLNKLKYTLSLHQKRILNLFQKAWLLNTYVLSKIWYICQIFPPNNKHLAAIKSICGQFIWQGFIFKVPRNELYLPVIKGGLALTDVESKAKSLFIKNILYSNADGNAPLDNFMLGQINNSTLTRNMREWIVKADELKLESHLNSSKKIYDFFIHSLNIKCKTMEDMPNLMWSNLLNNLDSNFLNSKCKTVLFCIFKDIVLNKKKLHLYGIRGTDSKFCENCGLVESVSHLVKYCQTSEEIWRWLKNILNKRLKILVKDPDELLSLSIGDRDFKYKAALWLTVQTIVYNLEKRGFGDLNEFKQGIRIVRFNNKAIFERHFKHFLNIF
>Tx1-12_BF_gag#LINE/L1-Tx1 219-1394  [Branchiostoma floridae]
MATAMTHPSSYAQAAATTGPVTTSREETAGSNVRSGCKPLFFLERDVHEVSQNEPYFSNVEVYKAISRVIDGSKILGIQQVRSMWRIYLSEIADRAKLLVSGFNVRNKHVDLRDVHPFRQNEGVRITVKDVPLSVDDSVVAEGLRRYGAKLLGPLRREKLRVDGRLTNCETGDRFGYMQEPATPADNIPRNVELAGRWRARIFYRDQTNDRNCSKCLGKGHLKRDCTSEWRCSQCNKLGHKRADCSGVVASTGENSLETGAEVRGAVPASEGYSCEDADTEPERSAAARQSQITDFTVAASKKKNKKDQQRPGGQKSTGSRVTRSNSRQQPNSRQIQQSRKEAAGVQPSRQVQAPDPRVMELIEAGRHSWSSPPGSDATGSTLTSSSEDDA
>Tx1-12_BF_pol#LINE/L1-Tx1 1441-5127  [Branchiostoma floridae]
MTSNLSFISLNVRGLRNHSKRTTLYHWLERQKADIFLLQETYYTEDKMDVFERDWNGPQFHCFGDSHSRGVSILCKKKIDMNVTDVIKGNDGRKLLIKLKDLTILNVYVPTEKKEQQTFLTSLRDWINDNNVDNLIAGGDFNMVNNTAMDRNSKQSLAPSAGEKELIRFKRQLKLVDIWRERHPQVRQFTWRRKNPDLISSRIDFWLIQKSIIDSVVKCDIRCSIKTDHQAIFLKLLLTDFARGPGVWRFNTSHLSDDCYVNGVKSTLIDVVKEFKDNNVSKQMLWEICKNKIKDFTDKFSRQKAFQLNNDLVRLETQLTELDKKIDETLDKDVLDVYAQVKSKVETIYEYKAKGAQVRSREQWIEKGERSNKYFLSLESSRSKQNTITRLKHENKEETNPFKILDLESAFYENLYCCDNPATDKQIDTFLESVDVPSLSDEDRLLLDDPITKNECFSALKYMKQNKAPGTDGLPAEFYLKFWKEIGDMVFESLKEGIENKRLSVTQKRALLKLIYKKGDKTDLSNWRPISLLNTDFKILAVVLAKRLQDFLPKLISEDQTAYIKSRFIGQNVRLIQDVIYYSNFYNIPAAVVWLDFEKAFDSVNWNFMLRTLDKFGFGPTFTSIVKTMYTDIESCIINAGWQSAYFKLQRGIRQGCPLSALLFNLVVEILATKIRQTRTVKGINVEINDNMFELKISQVADDTTLTLCGDDSIRNALQIVDDFSNVAGPTLNRRKCEAMWIGANRGRRDTPFGIDWPNRPIKSLGIYYGLSEEECETLNWEKRIDNFENMLLKWLSRKLTLYGKVLIIKTLAISQLIYNMSMISTPDWALKRIEKACFSFLWNRKPDKIKRKVLYSNYQEGGLKMVDIYSKRSSLQAVWVKRLMQSALDDTKERHWHLIPLHFINHFGKDFLLFRFNFCKGGDAPSLRVLPPFYRQVVLTWHELGGGKTDFVRQRQEIIWCNKNYKLNNSTLFFEHWIRSGLIYVNDLCENSEYVASDILLRKLSDKRNWMSEFMQVKRAIGYSWTDENDCTGRETLYGTCVWFNSSMISLDTLNSRYLYSVSLMENVVRPTAQAYWDSVTPNLDWKAIWESQTCYIRYNKLREFNFKLLHKILPCRYLLNKWKIRDTSGNVYSPFCDICNKLENYEHMFLECTRLRKFWGRLNNTEDNQSVKNVLLEHNKCNITLLTIAKFSIYISWIRWKDNPRQLLLDDVHNTFMSLCSLYSAE
>Tx1-12_CQ_gag#LINE/L1-Tx1 13-1191  [Culex quinquefasciatus]
MEPKRESTIKLRFGAGSRGPNNAEVFKFFGKQEWTXEELSAMYRDDYSIFVKFKTEQQMREALSKLGPQTRFEYDDGTSMMVPVTAAAGSFKYVRIFGLPPEVDDRFIATAMSKYGTVQQMIRERFPVETGFPIHNGVRGIHMELVSEIPAQLTIQHVKARIYYDGLQNKCFGCGALDHLKAACPNRKDVNKRLTPAQKPGTGSFASVVANGTSGKAEELPPXSGMVLLGKXGAAPPTAPAESVQPSEPTPSGPPXSGPSDQPQLPADPVMPPVPIAPQEPTPPKPADIAEEKQDQPMEEDGEREQSESDGEPMEKDGEWIEKXGKGGKGKGKRGRPKGRPGSDSSEVDTNGRKKFIVPGQXHDLLDAQGDRTRSRSRSAAKPAGGDLQXXK
>Tx1-12_CQ_pol#LINE/L1-Tx1 1351-4626  [Culex quinquefasciatus]
MNFVYTIATLNLNSSNANVNKNLLKDFIMDYNVDIAFLQEVSFEDFSFIYSHNSLVNISIDKKGTAVLIRKSFSXSDFILDPSGRIVSVRVNDVNLINIYAHSGNNLRKERDNLFTEALTVHLNKPGTKSMLIGGDFNCILHAEDSGSSQKNFSCGLKHLVDLXKLKDIAKTRKECKFTFHRGESASRLDRFYGSDNIIGNVTSCSTIPLAFSDHHAVLIKLKLDDNNLSTRGRGYWKINPSFLSMEDVTEKFKQEYLKLKQRDIFNRDLSKWWFFHFKGKAKNFYKSESWHFNQSSRNCKAVLLNRLNELSDKLANGDNVGDEMSVIKSKLMSLEQNRLKNLGEKLPACTLAEGEKITIYQLSNKIHRGNIFGLQLRDGPSHEILTDNAKLGPVIHQYFSNQFQQSEDNISSAEIDNSIESISKNLSNDQKINLVKPITVEELYETLKKCNRKKSPGPDGLTYEFYLCHFDILKNDLCRLFNLYLRGESSPPKEFSEGIITLVPKKGDKTLLENHRPISLLNTDYKLFTKLLANRIQIYMEDLLGSGQSACIAGRSCTDNLNDVRRLITKSVESKTFKGMLLSIDLEKAFDKVNHKFLWKILEKFGFPEKIIKILQCLYTKATSRVLYNGFLTNEIKIFSSVRQGCPLSMILFVLYIEPLIRKIDQCILGVLTYNKFLRVVAFADDLNVFVRNAEEFDNVLSIVDSFSRYSKVKLNYKKSCFLRINSCIGGPFIVQETEQLKLLGITFKNTWKDIVDINYSKLISDMKYRINLNNFRMMSLLEKVWFINTFVLSKLWYLSQIFPPKNQHIATIRKIIGMFLWKNNIFRVDKRQLYLDVDQGGLGLIDPESKCKALFIKNILKEQNISATDVSEKYLLGLNFTSKLTRNGKEWIMLAADLNCSSPTINTAKQIYRNFIHEYLFKPRVQVELPQVNWGALWKIMGQTFILAKDKANLYLLINDLVPNKRKLKQYNIGRIDSEICDECGQIDTNSHRLRTCTAGSELREWMIKVLRKRFGIQLGQIDDILFWQIDENSHLQKAAMWLVVHYVAFCVDKFPGLSLFVFQKSIREFRWNSRTFVKRYFDTNLNIC
>Tx1-13_BF_gag#LINE/L1-Tx1 195-2060 Big one. [Branchiostoma floridae]
MATPKSDGNDMFQKSFSIKFEEETDVRRILESFHEMAGIDVKSDLHNVWLKGRNTFEVTTNTMGKKNELMLSLKNWYPHVEVQGYGMGTVVSLFRVPSYITEGTVQAVLRQYGKVMSVKYPTYPPPYDNIQKGIRQYRMVIEKPIPNALRINNNHIWVKYEGQKQVCLKCNQEGHFASDCDQIRCFKCNEIGHTIKDCTNEIKCNVCGKSGHTNRECAASYARALAKPSNRWTRESVVNFEEMSGGVSVSDSDSEGEELTDEEDESDDLVNTGCNACKEKSGFPLHVKKVCHRCDKESPSEDVHLITCKKCSEQDTFYCGECFHKRRTVTSESEISIYLSTSQDELDPEETTPSPETQTSSEETQLPSQEVVSEADSQRKQASSQKAQPPTRKGKVPSTSTPSQVKSSKTSSGQEKTVQSKTPLSQDKPTPSQDIVPPSQDPTTEPTKIARKTSLSQDKSGQDLASPSQDPVQGPSNTPETIWTTVVSKRNRTSDSLPQPAAKKATPKSSVSSSQKSSLERIIAQKRAYEGSRLMRNNGFPMACAHFGYKCPKEELLWSSLSLHLSNTHGLKSPTFACPVTGCAIRSPSPAKWLTHLICEHVEYVEGTTPKALERWFSKKM
>Tx1-13_BF_pol#LINE/L1-Tx1 2104-5616  [Branchiostoma floridae]
MASLLLLLISQMALNIATFNVNGLRNEQKRTQAFNLFKEKRLDIICLQECHVGDKSEQLKWTKQWGGRALWNPGTQTSCGVAILFSPCSDWSVSDINKDIDGRIISCKISCRETAFKLCNIYAPVLNSARRKFLSDLLEYISTRNNGNNVILCGDFNFVEDLTWDKKGGNPTQGNIGNKEIKDICSRFDLEDKWRVLNPNTFRFTWRDKKCTIQCRLDRFYLPQRLAVSLFTYLPVPFSDHDGVSFSVKITKNIVRGEGLWRCNNSVIATQTFQLDFDKHFDFWVLLIPYFPDLGQWWDNVKGKIRQLIVSHAKRMALEKRQNRDRLMERIDFLTITIAQQPNPDLAKELARVKQELFDLKRQENEGAKVRSRVQWEEQGEKPTKFFLSREISRGKAKVIEEIRDEKGTIIKDQKGISKVFESFYENLYANEDLDEEAQKELLNQLSNTIPEELQVQLEQPLTSEDYLLALKSFSNGKCPGEDGLTKEFYIMFWDKLKNYLPKILNEGLNRGVLSESQKGSVITLLNKAGDPLEVKNKRPISLLNVDYKILSKAITNRLKKVLKYVIHEDQTCAVPGRSITDNLLDFRNIIDFVNHKNLEGAIISLDQQKAFDRVNHQFLDKVLTKMGFGHVFRGHIQSLYKNAYCKIMVNGHLSNKIAFSRGVRQGCSLSPLLYVISLEPLACLIRNNKDIRGVQLPNGTEKKLSMFADDSSALITTDDSIGRLFEDIKTYELGAGAKLNKGKSEALWLGKWRGRGDGPIQLKQWTNSKLKMVGGFFGNGNLAKTNWKHRISGFKDKLVKWEDSTLSFEGRKVVINTVLIPTLWYIAPVFPLPKVCEQEIQSLIFKFLWGGKTEQVKRSVLYLPKMKGGLEIVNVAEKAKAMFALTFKHLVQKESAAWAVIGRYWLGLFLNRLGLYQWSNLVPHCVEWPKTQQHLKEVVEGYNSLDSTLDWSQTTLKCLYSLSEGTWAGDAAVVLRQPKKNWSKIWAVCHNEILPNVLKDLNWKIVHNIIKTKSTLRFWKLIKDNKCIWPKCNQSETLQHVFFECEKAEQCWSWLEGFIRRWIAHDFRIEQSFATLDNVDVLDKISKSKNDIVIYLSSSLRQRLWKERCELLYDKRLSSPQVTAVNVKTLLKNKITVEFHKLPESEFHRNWVKGFKWLKISNGKLTFRF
>Tx1-13_CQ_pol#LINE/L1-Tx1 179-3436  [Culex quinquefasciatus]
MNYTCIIASINLNAIQTRLKLSLFHDFVKNSNADIIFXQEVAFNNFSFIFTHHAIVNVCRNQGTAILIRKGXDYDDIICDPNSRIVSVLVNGINYINVYGHAGFXLKKERETLFAENIAIHLNKAAARAHVLGGDFNCXLDPTDTKGNTKKNCNSLKVLTSKMALKDVXKALKNQAVQYTFXRGDSASRIDRFYASQDXLKSVLNFETWPVIFSDHRAILMKISIQKSDLGTSFGRGYWKINTAFINDDECENEFCFTYEALQQRHSYENNFMNWWTTHFKSKVKNFFKMKSIEFNRNIAMRKSELYKTLIELSSRQNDNEDVSREMGLTKSLIFKIESEKLKYYESKLSSNSILTNERTNIYQIIARHKFNQSSRIEKLVDGCNKIVGTENIKKFLFNHFSENFKKHDFLEPSCRSLNYIKKRLNQDDSNSIIGPITEEELKKVVWSCTKKKTPGPDGICYEFYVKHFDLIKNDMIKLFNDLLRGNVVIPSSFCEGVITLIPKSGCAENISGFRPISLLNCDYKIFTKILANRIQNVLGNILEEGQTACVNSKSCVDSLDMLRKIIVKASGSKRFKTAIVSFDMERAFDNVSHDLLWSILEKFNFPDQFIACLRNLYRNATASVLFNGHLTNCFKIGRSIRQGCPLSMLLFVIYLEPLIRELYSSVTGILLDHSFIKVVAYADDVTMVVKTDYEFDNVLKIIEEXGKCSGIRLNSKKSSYVRINNCKLGPQILREETQIKVLGMLIVNNWKDMIDKNYSKIISACRGKLNSICIRNLNFVQKSWILNTFILSKCWYLGQILPPDKRHIDELKKMVLRYFWGSQIFKVEAGQLYLPFERGGLALVEAEVKFKALFIRNILYKNNVVNRKHYLIDNISTKNLTRNTYDWVNIAIEYEAYDFLNTSALIYSSLLSKQSCEPKIQSKAPSPDWLSTWENFSENYMDSDAKSIIYEILNDIYPNKEKLCSYNVRGLNNAECEICXELDTNLHRITNCTNSKEIWEWVVEKVNVNMKANLPDPMEILSAYIGTKNRIFQAVYWIVSEAIVYNMRHYKNPSLFVFKSILRNKRWDQRQFFVRRFGKYAFVF
>Tx1-14_BF_gag#LINE/L1-Tx1 38-907  [Branchiostoma floridae]
MRKQAKRARQSSSDQTSPDKQLGAQMKGPPPTPTKMASGEDPNFDSISPELRPLVHLLSTQSKSLHDEVMAEFKSVREELSVQIQSVNTKLGKMASEVDDLRDSVSYQNKEIEDLQQALKVEKRERIRATLLAERYSMKSDIIIRGLVHHQDESPDQVVLSFLSGHLGMSLVPPFVAVHRLSRPTQNQPNPAMLVRLVSLQHRELILSAWRKLPGDKKKGHAVHEHLPRPLQQARAKLMPERDSVIAKAKTDRREARVFIRVPPKETCAILIADGKTLKTVDAVDLVFS
>Tx1-14_B_pol#LINE/L1-Tx1 1726-5501 via tfasty with L1Ci-B_pol, 2 frameshifts. [Branchiostoma floridae]
MTQVELQISSYNCNGLSDSVKRRELFTWLRDKPYHIICLQETHSSIPVEERWQSEWGGTMIFCHGTSNQRGTAMLFKNNINPHIHQTKLDVNGRWIIVDLSIDDFRFCIVNIYAPNDDKPEFFLNLSMELDNFADSTENLIITGDFNTVQNPLLDRFSTNCTYHPKAYEAISEFKSKFDLHDIWRFRNPTTVRYTWRRRRQASRIDYFLTSFSFINRVNKCVIADKFRSNSLIFCIAQFPRGKGYWKFNLSLLDDSSFQHNTVKIMNEFFSINQGTADPHIVWDTAKCFFRGHCIKFSSWKNKQYLAREKKLTDDINRLQSQIDNMPSPSESILDDLDGKQKQLELLYNQRAKGLIVMSRARWMEWGDRCTQYFLKLAHRNYTRKNMQKLKISDNVFTSNPQEILEKQSEFYSSLYSFEEPPMPLSPENIEPFFPAQYNKKLSNEQQLLCEGHITDEELQKAINTFSNSKSPGLDGIPVEVYKHFYSVFKTPMLNCFNFSLSKGYLSNSQKQGLISLLLKEGKEGQHKDPTILDNWRPLTLLCCDVRILSKCLALRVKTVITDIIHKDQTGFVKGRFIGDNIRRILDLIDYYEKEEKPGLIFISDYKKAFDTIRWDFIIKSLEFFNFGPQFIAWVRVLYSNITSSVINNGYISSPFTLHRGVRQGCPLSPYLFIIAIEMLAIKIRRNHNISGLSVKGRTSKISQYADDSNFPFTPDISSFYGLLEDFDSFSHISGLLLNFDKCKVLRIGTLKNTNFVLPSGHPIKWVDGGIEILGIYIPVDLTNIVTQNFDPRLAKIDKLLFPWKGKKLSLYGKITIINSLLVPQFTYLFQTLPLPDKHFFKHYEKNFFSFIWNGGPERVGRKTLYNSVENGGLNLVNLYAHALTLKASWVPKLFFNPDWFTACILHTHPCIESVLFPFYQLKSAQDLTLSPFLSEIFQAWYSYQYKPPITPDEIRQQVLWMNSNIQVGGKPIIFNSFVNRHIIFVNDLLNIDGTIMSYNELCYTYGPVCNNFVYLQLLTAIPKKWKSTLIGVTPTLVCRPQQHSSEWLLRIKINKDLYKHFLVSEKLIDIPQNVQMAWLYLFDTPIPWKTVYTSVIFCTIDPVTRFFQYKILHKFLPTNRLLYIWKCVNSPLCSLCHMEEETYLHLFWDCPQVIEFWEKVKTWFSEKIGQTLIVNSFNIIFGNLNQGASIIGNLIILLAKMYIYKCRESKRVNFKSFINYVNFFEKVEAQIANRRGKMAKHHGKWGTLVTNTASVSV
>Tx1-14_CQ_gag#LINE/L1-Tx1 156-1316  [Culex quinquefasciatus]
MEKRVRVNTLKVTFKRGSKEPTDAEMFQFCREQHFKPEEIYSVHKDKELGAIMIKLKNENLMRAAIQALQPVLNFSYSDGTTTEVTVSDADNSFKYVRVFNLPPEIDDKEIYQALSQYGTVRQQVRERYHQDTGFPVFSTVRGLYMEISKEIPPQIRIRHFQARIYYDGLVNKCFICRSPDHVKQNCPRRAAPVTKTPAQGRLYSDVAAVKSLLPGFLNRPLSETDSCQMTPLGKPVGGKQSPPDKPEVPVEPMEAAMEQSEGLTSPPSALQVQLVESPVFRPNLEPEGTPDQGKQPDQEGKWQLQGRKGXSKKRPESFSPGADTSKKLLRSQSLRSRSRSQRRHPKGVPETSEPQGALSTSDGQSDDQIFKKPLPPPSPSPEQQK
>Tx1-14_CQ_pol#LINE/L1-Tx1 1243-4602  [Culex quinquefasciatus]
MDNRTTRSSKNHCHHHPHPLNNRSKFNFYPKMTFSKKIATINLNSIKTEVNKSLLRDFVQNEDLDFIFLQEVLFEDFSFLGAYRAFVNISEHDKGTAILVRKNQEFRNIIYDPSGRILSIVCDDINLVNVYAHSGTNKKRERDDLFRDEITPHVIKGNCSHTVIGGDFNCVLNKRDSRSTSANLCQGLKDLTTSMHLKDVANVRNGSNVEFTFHRAGSASRLDRFYVSAQFLDKVVEIRTVPVAFSDHSAVVMKFLVDQSALCQRGRGYWKLNSSLLNKDDISCRYVVDFYQLKDREIYTRNRSTWWNTVVKPKTQFFFKNESRIFNCRINSAKSELYAKMYDLAAERRNGADNRXQLQEVKSELMRMELDRLKFYGSRFPQTSMLEGEKXSVFHVSNQMHKGCDGSQFQLRDGDDLITDSKRLKKKIEDFFTGTFQAEDSASLESSVEALRDVSNSLDLQQQQELVRPIDEAELKAVVAGAAKKKSPGPDGISYEFYSVYFEMLKNDMLELFNRYLDGSLKPPKEFTAGIITLIPKVNQADNLNEFRPISMLNTDYKIFTKILANRLHAVVGDLLGAGQVACTVNQSCSTNLIDVRTIIAKAAESKRFKGFLLSVDLEKAFDKVNHVFLWKVLEKFGVPERFINCIKNLYESATSRIIFNGILTSDVKIGSSVRQGCPLSMVLFVLYIEGLVRKLSANIRGVLLSGKFIRVLAYADDLVILIRDDAEFDLVLQIINSFAEASCIRLNRAKSAFIRINNAKGGPQQFREADEIKILGVIFTERWSAIVKRNFDKLLGDIQFRLSKHRTRNLNLIERTWLLNVFVLSKLWYICQVFPPDNVHIAKLRKIAGQFIWGPRQIFKTERKQLYLDYEQGGIKLVDPEAKAKALFIKTILYGTGNNQVEDTTLLNFSKKQALSRNTREWLELAVSLKPNPMSTSVQTLYRHFINENRTTPKVEERFPALNWNQLWENLGQSFLSSECRSQMFLLYNDLVISKEKLVKYNIGRLQDDLCEWCGVPESNEHKIKHCVKTEEIWQWLRRTLTDRLGICGDPEDVLTRQINGRNQKEKAGLWLTMFLMSYIVKKYPKISLYCVQKGIRDSRWNNRTYFKHCFGSELNVC
>Tx1-15_BF_gag#LINE/L1-Tx1 227-1093  [Branchiostoma floridae]
MGKRHRGSRGSSSEENSPTSRPCPPPKTAKMASPEAALTSLPPDLQKLAQLFFDHTKKQQEDTVAQVQTMGDKLSRKIDALDAKMHTLSAELTTVRERVGAVEASAEFHETELQNLRKQLDEERRARAKAVILAERYSRKPDVIIRGIRFHKDEDCKQILGDFLTTELHLELKPIVAIHRLSKPTTTRPNPPLLVRFVNFHDRDRVLFEGRKLRGNNKGFAVYEHLPPPLQSARAKLVPERDESIKNKGKASIVVPPRSTFAVLFVDGKEKKRIDAVDLLLNSEITLT
>Tx1-15_BF_pol#LINE/L1-Tx1 1826-5593  [Branchiostoma floridae]
MTQVEVHISSFNCNGIGNSIKRREVFTWLRDKQHHIICLQETHSTLSVEKRWQNEWGGSMIFSHGTSNQRGTAILFQNSIKPCIHQTKTDKDGRWLIVDLSLDEYRFCLVNIYAPNEDSPEFFFNISEELDDFSESNEHLIITGDFNTVQNPLVDRLATNTTYHPKAFESISELKCKFDLQDIWRFRHPDTVRYTWRRRRQASRIDYFLVSFSLINRINNCKIADSFRSDHRLISLSFVTADFPRGRGYWKFNTSLLEDKSFHTKTVEIMKEFFSINSGTANPHVVWEAAKCFFRGHCIKFSSFKNKQYLSREKTLIDDINALQTELDSTPSSPDSVLDALDQKQKELELLYSQRVQGVMTRSRAKWMELGDRCSKYFLNLVHRNYTRKNIQKLQISENSFTCNPTEILERQTEFYSSLYSFKDPPVPLTPENCKDFFPEDYCRVLSENQRQSCEGLITEDELLDAINSFSSGKSPGLDGIPVEVYKQFYSVFKALMLECFNFSLTQGFLTNTQRHGAISLLLKQGGNGQDKDPTLLDNWRPLTLLCCDTRILSKCLALRVKSVISHIIDKDQSGFIQGRFIGENIRRILDIIDHYEKEQKPGLIFISDYKKAFDSIRWDFIIKSLNFFNFGPQFSAWVKVLYNDITSSVLNNGYISQPFCLHRGVRQGCPLSPYLFIIAVEMLAIKVRSNEDLTGLSILGKSTKISQFADDTDFPFTPTLASFYALLKDLESFSCISALTLNFEKCRILRIGTLKNTNFKLPTHLPFQWVDGNVEVLGVHIPQDLDTIVDLNFEPRLAKLDRLLYPWRIKGISLFGKVTIINSLITSQFTHLFQVLQTPDKSFFQQYERKFFSFIWNGGPERISRKTIYNSIENGGLNLTHLYAFACTIKASWVPRLYFNQDWSTTWVIRLHPSLGSSLFPFFQIRSTKHLKLSPFLLDVLDAWFKYQYKPPTCAAEVKQQLLFMNDSILIDSVPIFMNTFINRNIIFVNDILNDMGTISTYEEFSRKYDAICDYFKYKQLISAIPQKWKSMLCGNVFESVCKPVQRNSCWLKQVKINKDMYQFFLSYYNLIDISHNVQLKWLYLFDTPIPWKQVYSSIIFCTIDSSTRFFQYKIVHKFLPTNKLLYIWKCIDTPLCSFCHEEEETYLHVFWECPHLTPFWDKIKNWYHSKTTINLKLNGFNIIFGNLHFGTPPIENLITLLAKIYIYRCRKPSTLNFDSFLRYVNFFNKVEYYVALKKGKLDKHLGKWGSLCS
>Tx1-15_CQ_gag#LINE/L1-Tx1 152-1405  [Culex quinquefasciatus]
MEPKRENTIKLRFGAGARNPNNGEVFKFFTKQQWTSDVLSAMYRDDFCVFIRFKSDELMQGALVQLGNRVNFEYDDGTTVWVNVTAANGTFKYVRIFGLPPEVDDRQISAAMCKFGTIQLMVRERFPVETGFPIWNGVRGLHMEVTAAIPAQVNIQHVKARIYYDGLQNKCFACGALDHLKANCPNRKPVNGRLTVLTKPSEGSFASIVTNGTAALPLPTPTMVVLNKPGGSQEAGTKGNGSDLADQQPAGQESAVQQPAAQVVPDQESLEDRPANGSSTDGASGRSDADVGELGGTESTGKQSNEQSALLLNPLFSDEIREVADSEMVIINPGDNERSDETMENAEAWSEQKGKGKKKGKRGRPKKSVPDTSGSDTRGGKQFIVPATLKDLLLSQERRSRSRSRAVSEGGRRRGKK
>Tx1-15_CQ_pol#LINE/L1-Tx1 1569-2098 N-terminal fragment [Culex quinquefasciatus]
MNFVYTIATINLNSSNCKANKGLLKDFIMNHDIDVAFLQEVSYEDFSFVYTHNALVNISSDKKGTAILIRKTLEFSDYILDLSGRITSVIVNNVNMINIYAHSGNNMRKERDHLFTEALTIHLNKPKCAFTLIGGDFNCVLDAKDTKGTQNNFSSGLKNLVDLLSLQDIAKTRKAN
>Tx1-16_BF_gag#LINE/L1-Tx1 165-941  [Branchiostoma floridae]
MSTRATRGSTRKRDEPAGHMEGKHGDDLDDVTGASEFEAFVREQFKKLLEGQKELQEEIRALEDNVEKNVQLLEARMEQMEKKMEASETTQRESAKQIKSITQRLKATEQAVEEFQTKCNKLERFSRRNNVRIIGRKVQKGENCVSTVEKILEDKFGLDHIKIERAHPDGPRNSDSDGVPQHILFKLNSYADKVSIMKAARRKLQDEPYYFTDDLTVTDLQEKRKWMEKVRHAYKEGKKYRFYNGYWRDGQGKVVSFD
>Tx1-16_BF_pol#LINE/L1-Tx1 1352-5241 via tfasty with L1Ci-C_pol, 1 frameshift. [Branchiostoma floridae]
MMVPGQEFSLASFNCRGLGNNAKRMETFTFLKDKPHSVICLQETHSTFEKENQWTTDWGSQILFNHGTNNSCGVLIMFQKNFSYQIHEIRKDYGRYILIDLECGNFRCCLCNIYAQNKDDEGFFEEIQKNISEMEACNENIILSGDFNTVLDTKKDRAGQHFVNYHPKATQAIRELSATFDLVDVWRLNNPETRRYTWRRQKQASRLDYFLVSFSLLPKVTKVAIAESFKSDHRLIFLNVVPGDLKHGPGYWKFDSTLLNDNMFLKETRKFIEEFFLFNKGSAEPRVVWDTFKCAFRGHCIKYTSFKKKQIFEKENRLLDEIRRLQNDIDSLGSPPLCLLEELEQKERVLETLYEEKRQKIMLHSRATWMKLGEKPTKYFFSLLNRNKTKKNVTKIVLQDDKFVTNPSDILCEEVKFYSSLYSFEDVKKPLKEEKEYNMFFVEGNIPTLTKQQSEICEGRIKVKELWDSISTFKKGKSPRVDGITVEVYKEFFYLLKQPMLDCFNKVYDLGQLSETQKVGIISLLLKQDATGTDKNPVYLKNWRPLTLLPCDTRILSKCIALRIKKVISSIIHMDQTGFLSGRSISDNIRKVLEIIEFCEKDNIEGLIFITDFEKAFDKIRIDFVLEALKKFGFGKSLLQWVTIMYTMITSRISNQGYLSEPFRLLRGLRQGCPLSPYLFVLSVELLSIRVRANENIEGLVCRKEPCKLSQFADDTNFFLKPVLTTLETLCLELKNFSNISGLVPNFDKCIILRMGPLKDTGFQLPCTFPVKWSDGPADLLGIHIPQDMNTLISDNFSRKLQKVDRILQPWKGKTLTLYGKVTLINTLVVSQFTYLFMSLPSPDAEFFQTYEKKVFKFLWSGGPERVKRNIVYNMYEYGGLKLINLEAFNAALKAAWVPRMYLNKSWFCRKMLNHCIHFNYDIFPFLQLTEAHFHNVVSKHSYLSTFFEEVMLAWLKAQKKPLDNMSEYLRQFLWFNSNILIDRLPFFWEAFSQRGILFVNDLLNTDGYFMTYRSFIGKYGRICDELKFIQLLSSIPFKWKQSIQGIPLCETAIMPVTKYSKWIKGLKINKELYRFYLVERKCVDFHCKAQEYWTELFNDQIQWDVVYSLTYKTTIDSYLRSFQFKLLHNFLALKNKLYKWKLSENTLCSYCKTEEETPVHIFCQCSFLVKFWGDVENWIRKHMNMVFRFTSRIILFGSLGYPIILNTLLLIAKVYIFKCRHLKIPTIDGFLAYVHYYYKVEYIIAQNLQKIEKHLLKWDILVMKMQIVLPGLGCFLYIHFVLLCLFSKMNKDYVKK
>Tx1-17_BF_gag#LINE/L1-Tx1 2-508  [Branchiostoma floridae]
KFEKEKVTAQQKQVQLEAYSRRENLLFYNILEENNEKPKETERLLTQVLIHSLKLPEDMVKGIKFQRVHRLGPVKIGENVRPRPIIAKFVWYKERERVRLAAKNLKDSMIGLSEDFPRQIREVRRKLLPVLRAARKAQPPKYAIMNVDQLYIDGVLYKGPEAKRPYVT
>Tx1-17_BF_pol#LINE/L1-Tx1 1090-4695  [Branchiostoma floridae]
MRGVMILFRKNTKFVVHNCIKDNDGRLLILDVSLHDTRVCLVNLYAPNSDDPAFFEDIVNKIATLEECSENIIIAGDFNTVQNTMLDRAGRNPTEYHPRAQQKILDMVLELDLVDVWRFKHKNTVKFTWRRRHQASRIDYFLISFSLLTNVVSATIAGRLKSDHNVICISVQTTTFSKGKNYWKFNQTLLEDATFVKETEVFIREFFENNNGTSDPLTVWDTFKCCLRGHTIKFASNRYKMYSNKEADLTKQISELSKELDETDTPSDSLLEEIKTLQSELESLHERKTEQTHYVRKADWMEFSERCNKFFLLSHRNYSRKNVTNITTSDGDNTQDPLQILANLRSFYSTLYSFKEPPKPLDEKNCSAFFQSTDNVNKHLNSEQQNSCEGPITEKELWIAINSFKNGKAPGLDGLPIEIYKVFFSSLKQHMLQSFNYAYEKGQLSNTQRVGLITLLLKQNSEGQDKDPSKLTNWRPLSLLCCDVRIISKVISLRLKNCISDLISEDQTGYLKNRFIGENIRRILELIEYYDTNEKPGLIFIADFEKAFDSLRWDYMFKVLNYFGFGESLIKWISVLYNNISSKVINNGHISDAFPLLRGVRQGCPLSPYLFILCVELLATKIRTNEHIKGLKIHTLETKVSQFADDSNFPLQPEAQSLVALVEDLKNFSIISGLKPNFDKCTILRIGSLKNTTFSLPCDLPIKWTNGPVQLLGIMLGLGTTGYTEKLDQNYWTKLAKIDKILLPWRGHSLTLFGKIALVNSLIVSQFTYLFMALPSPSAKFFKEYEKKIFNFIWNGRPEKIKRKVIYNTYDCGGLKLIHLPTFDLTRKASWIPRLWQAKTPLSKYLTDFPDPVCKLYPFLQLSKYHIDCIFTKFSRSVSPFFINALKAWLSFQFKPPETHQDIQSQLLWLNSNITIDSKPIHFRKQATGQILFISDLLDTNGKFLSYKELSLKFGKTLQMMEYNQIISAIPSTWKRHLKDKPLTIGPNAPFISNYSWLGARKINKDIYMTTLLTNNVVQTPVKIQTYWEEILDIIIPWKQVFRLVYKTTICPRLRFFQFKMLHKFLPTRKMLYIWKLSDSPICIHCGNEQEDTLHLFWECPRVSQFWRDVKKWHERVSSEPLHIDLASVILGDLTVNSPRLNNTLILMAKFFIYKQQEPERTNWQFTTVNGEKYFTSFLKPLYFLFVFCYSCGFALFNYFH
>Tx1-N1_CQ_gag#LINE/L1-Tx1 134-1099  [Culex quinquefasciatus]
MERTQKKNTIGFEFERDGVMPTLKEAISFLVNDLKIKDTEVHSVYLELTGKTFFVKFIDETTLKEVTLRLKETEPFKYANGKVVQVRVAAADGFFRYVRLFNLPPEVTDSDITKVMAKYGTVRQMVREKLPLELGFDAFSGTRGVHMEVKTEIPPSLFIGHYKCRIFYDGLRNRCFVCRQEGHVKAACPSKASASRATGESGSSSEVQGVTEHVENLIVPLNVAVENPIVPNGTVPSIEDSNFLKEIAFGEDFEDELGKDGENESEKEWTTAKKRGRQQKDKQEESGSDSSEPGKSKVSRTPSLLKLQSEYNRKLRSGMSK
>Tx1_XT_gag#LINE/L1-Tx1 555-2867  [Xenopus tropicalis]
MIKKMPQGTKGKRPERPGYSSAAKQQSEPVSKNPSASTSAASANVTPAKTFAQAVAAGSSPSQVTTGAEQLTRKHGVRCLMSGAHGIEAYIKAAAELVGPSAIVAASKMYGKAIIFARTLAAVHTLVQRGITVGGSYVPVEPLEGLGTRVVLSNVPPFLQDPILRPHLQALGELKSNISKIPLGCKESRLKHVLSFKRQVQLLLPRGQDSIEGSFGVLFEGVLYKIFYNTEEVRCFLCKEMGHTRQSCPKRQIKTTANTCTPGTSCVTACPARTISAGPLKGTSPSLENSKEVVTQPTSTTSKPPPSSLKLSKSPACLATAAKEKRGNKFTTSPSGTAIPTTHQPSPVGVGAHKIVTSAGVGAVSDPSSLGGKEKKRKFKSNHLVPEEWALVVNDGAPPSKGKKSSETSGPHVVTLSNPSFRLSQPVSDHTLSTPDSVRNNEVNGLESLEQGNMGFSTESGVQHLPPTHLEVLHMECKGTPNETPAGWVVNVPEVLSFGDCKHTQFSVPQDIPLLEGENIGITPILESADKTVWGDDGAGVVDMKEDSMADSEKNNPVKSAVHVEVSPPLPSTDPNVIAIRSDQEAVERAEADYRASKAPPVVEELIPSAAPDTSEGVAGEIEKAPEPXQVLQMMGASDPIPATSRADILKAQVEERHYQSLSQEEPRDEDNIVEEGETGVANPSAPLIPAEELKRFLESNLGVKLDNKLRMALENWHDLPLIIRSVRHYIGVIREAKNYGTAEYLRIIKFHKKCLSHLASVRAKALPNTQ
>Tx1_XT_pol#LINE/L1-Tx1 2870-6781 (92% similar to Tx1_pol) [Xenopus tropicalis]
MALSISTLNTNGCREPFRMFQVLSFLNQGRYSVSFLQETHTTPELEATWHLEWKGRVFFNHLTWTSCGVVTLFSESFQPQVLSAKSVIPGRVLHLRVQDSNSTYNLINIYAPTTGPERTRFFESLSTYVETIDSDEALIMGGDFNYTLDAQDRNVPQKRDSSESALRELIARFSLVDIWREQHPDTNTFTYVRVRNGHVSQSRIDRIYISGHLMSRARCSTIRLAPFTDHNCASVIVADAPSLAKAAYWHFNNSLLEDEGFAKSVREIWMDWRGFQDEFATLSQWWDVGKVHLKLLCQEYTKSVSRQRNAEIEALNEEVLDLEQKLLGCEDQNLQREYLEKKETLRNIEQRQARGAYVRSRMQLLCDLDRGSRFFYALEKKKGNRKQITCLLDEDGTPLEDPEAIRDRARSFYQNLFSPDPISPDACKELWEGLPVVSERRRERLEKPITLDELSQALSLMPHNKSPGLDGLTVEFFQFFWDTLGPDFQRVLTEALETGEMPLSCCRAVLSLLPKKGDLRFIKNWRPVSLLSTDYKIVAKAISLRLKSVLAEVIHPDQSYTVPGRTIFDNVFLVRDLLHFARRAGLSLAFLSLDQEKAFDRVDHQYLLGTLQAYGFGPHFVGYLKTLYTSAECLVKINWSLTAPLTFGRGVRQGCPLSGQLYALAIEPFLCLLRKRLTGLVLKEPDMKVVLSAYADDVILVAQDLSDLKRAQECQEIYAAASSARINWSKSSGLLEGPLEVDNLPPIFQDIPWETKVIKYLGVYLSAEECPVSLNFSELEERVIIRLGKWKGLAKVLSLRGRALVINQLVASQLWYRLVCLSPTQEFIAKIQRRLLDFLWLGKHWVSAGVSSLPLREGGQGVVCIRSQVHTFRLQQIQRYLYADPAPQWCTLASSFYHKVRNMGYDRKLFVIEPEGFLKNLSPLPAYYQETLKTWSMVSVLREGVIQGEDILTEPLLYNPSLKTRMLESTSIRRRLCRAQLTRVGDLLDFERIDWVQTQEVMQRMELRTTRVPNRLIKEIKDTISSGSHTFINEVLHAGEPDSPWNAPPPAIKIAPKIRQSPQAAPSPNLSQLENFTLTRFCDMPRKLLYSLMLHTVHFLALVSRYDTIWRRVLKEGERPQWRALYSSLVPRPTGDLSWRVLHGALSTGEYLAHFTDSPAACTFCGKGESLFHIYFSCARLQPLLALLRKLHLQFWLHFSPHVFIFGHPVSRDNRGKDLLSNLLLALAKLAIYKSRKQHLEGGNPLSAEVMFRVLVRSRIRVEYTQAVSAGRLTEFVDQWAINEVLCSVSPDLVSVPTTLTLHI
>REP_Tth_gag#LINE/L1? (solitary outlier)  gi|34761705|gb|AAQ82022.1| ORF1 [Tetrahymena thermophila]
SAYKNNVEKPQEEQQPVSTPLPSEENGLKLLQEPQTVINKQPRPEAKEVPISSNTSISQRSNSNDSSSINQNHNHQHRHSSISRQESKPTLQEPKPELPTSIDIGNKIWKLCRFDAGMNGCRNSSQDCKFIHLDLIEQVALSDKKKLANVAIWNWDQAKLDSKYQPSDKDLLNSWVNSNSNEGNPLFTKYKTMIEEKDPEFVQLTKDLTAEQMELEELQNAFQVKKQRYMSELSSRLRQKILSKSRQKAFDKLLSESAQKRAAASEAALSQESSSIEYLPPSQQKYSNRYPMIPHHKDQYLPFENSQYSSLQQQPKSPLRTSQQQHYYQQNNTQSYQPQHYAHNWNPTYQHQQSNNQRFEPSYKPSYY
>REP_Tth_pol#LINE/L1? (solitary outlier)  gi|34761706|gb|AAQ82023.1| ORF2 [Tetrahymena thermophila]
MIRSNPIYRSSKKSQTQTSQTIKLDSRLISQINSHLNKHDSNLKSNSCSNQSKSSKRCINKDSIKKVNQHLGSNKISPPQKSPQQHLKSKIIGSLLTITGFNTQGVAKANKRNKQYSTLYLQKLFAESDATILLETNCKENMRVDIHNPDYIQMNNHCKIRQMGAGTASIHHKEIKLAPYVASLNNEKALAQVLILENQQRVLIMGLHLQLQANPIEEQALLEEIISQVLQDNRLNHILIYGDFNLDVSTPNSSHADARKTGQIRRLKDFLKSKNLYIHGTNRHTREAFKQNKIIKTQVDFFISSFAPNSILKIETITHDESNRGSDHYPIRIQIDLQVAKAREIKKVINLKQLDLLSQKLQKYIRSSPKNETEIRDKINSIKGKLDLKQQNSQQLRRNINERINAVIRAIHKHEKVLMIDQNPAKTRAEHMKTRRKIIQSKDTIIQHKVSEILKEYYAESTKKVQSLFKTNIKRYYQNIKRVCNLGSKSNVLNTSSGPVENSNKELLFDSKDIQNEISKYFKEHYKCEAHINYYHTIGQLSSSEIDTLIQSSETLYSSRNKAFSNDYIKDQCFFPPKYSEISNAMQSIPCSKTTKKQMILEKMLSQQQHRDTNLRTLLKDILTNPDSFRQTFNARQIYLLKSESRQIINCRPITIQSSAIKILENAMLQHVQKLKDEGKVKDFHISQCGFQKNRSTIINICRTIALIQSTVAKKENRVAIFVDVKSAFDSVNHEQLFQALRNQGFDDIFIKSVAFLYQHCRINGYQIGRGVIQGGKLSPILFNYLYEEVRVKILAIWKSKKLDHQDLHFELFADDMLIILKKYKLTATLLEVLKQAYSEINLQINESKTKIMLIGKQETYIKDSLRLRQAKDIDLVMEFKYLGLVITNVGKIHKDVAKKVEKAKILTQMLKRWRYNKLGIIPCLLLWQLFIKSQLQYASAIMITSAQSEKCMRSLRNMYNSSLRDTLGLSRNASIQTICAVLGIENIESMILNSYDNLMAQINADKRIQMQFRVFTKSVKSDIANRYQQLLQAATLRNGRVKQKFWWQLNNQYDDLIKLNIYLQNPSGQFCWKCQRFYKGDSWLYCQHKKEAWMVLQKILNTTSKTEIVSVLNQRNTNWQQLPLDVRTSIQEQARLLVYQDISKVR
>CR1-1_AG_gag#LINE/L2 425-1771 [Anopheles genus]
MECLKCSAVVGTSDDPIICSGSCGFIFHRRCITPTLNKPAVKLINENRNVVYMCDICLDQSAGLVHMDTDATKSNDLLAQTLRDLEANVSVWISSALERGIETLKTELCAQVERKLETTLRETLSAIEASKMSKAALRATSDTPQTSKTVQDVNLETWATVTKKRKRTNSGDSNVQTIINRFDEGNNKVTPKIKKINDVKEPMGKNKENNKTLVIVPKVVQSCDRPRADLSARLDPRKQQLSEFRNGRDGQVYAQCPALANLDSIRKEVEDILGDDYSTSLPMARVKIIGMSEKYSSSDLVDLLKSQNEGIPWKQENVIGMFESKIYKYQIHNVVLEIDHETDKCLAKLDKINIGFDRCKISRSIHVMRCFKCGQFSHKSTDCQNKEACSKCSGEHRTSDCTSSILKCVNCVLANTSRNLKLQVQHAANSYECPLFKKQVERRMQLSQ
>CR1-1_AG_pol#LINE/L2 1848-4571 [Anopheles genus]
MFRETVEKVQPLLVLISETHVTEKEAFEQFYLKGYRVVSCLSHSRHTGGVAAYARSDVVLKVILNESLEGNWFLGVAVSRGMTVGNYSILYHSPSASDSRFVDILEEWLDRFLDLSKLNIIVGDFNIDWLNVEKSAKLKSLMDSVNMNQKVNEFTRIARQSRTLIDQVYSSIDSIKVTTDPLLKISDHETLVLNINDERCKTIQRKVKCWNRYSKHALCNNVSQGLQCGASDFDEAADLLWNTLKHAMSTLVEEKTIVSRETSRWYTLDLARAKRKRDKVYKKFIRTNRDNDWSEYTKLRNSYSRDLKNRRSDFFSNEINKHKKNSKELWKVLKSMLQPDESCVSVVKFNGVIEADDSIICNKFNSFFVNSVLDINQNIASVSEPSYYVDSATPRCHFRFQKITLEQLKTICFNLTKTAGIGNVSSTTIQDCYHVIGEDLLMVINQSLERGCFPKSWKESLIIPIPKVNGAANAEDFRPINMLHVLEKVLETVVKEQLVQFLNRNELLIREQSGYRQGHSCETALNLVLARWRVLMDRRESIVAVFLDLKRAFETISRPLLLSTLRRFGIVGRELSWFESYLKERTQRTLFGSSVSEPIENTLGVPQGSVLGPILFIMYINDMKQVLKACEINLFADDTVLFISHKEIKQAESLMNIDLNALDGWLKYKKLALNINKTCYMVMSAGVLEEPPSIVINSELIERVRQAKYLGVILDDRLKFHAHIDWVIAKVAKKCGVISRLAKDLDFFGKVHLYKSLISPHFDFCSSILFLGNKGQIKRLQRLQNRIMRLILGCGRRTPSAVMLNILQWMSVEQRIVYQTMTFIYKMLKGLLPGYLGESIVRGSDIHRHHTRRANEPRVPNLHSQSARNSLFFKGIQRYNSLPDEIKNARNLPDFKRKCVIYVEQTV
>CR1-1_DR_gag#LINE/L2 233-1219 [Danio rerio]
RRWSAKATDLFYHTLLTYWLCSLPRKMSLPSLSLCAGEASMEALELELEEVESQIRALVVRRSRLREQLLVVPNAKAVSSPKVRGNYNHIIPSTSTPRPSLSRPSAPGARLSQASFTPTPGYHGAWVQPRKVLPRSRGRTSPPVFEISTENRFSPLRESGPDVAIIGDSIVRHVRAASSKGNKVRTFCFPGARVRNISTQIPTILGAAESPGAVVLHVGTNDTGLRQSEILKKDFRSLIETVRRTSPATQIIVSGPLPTYRRGNERFSRLLALNEWLITWCKEQKLLFANNWNLFWERPRLFRPDGLHPSRAGAELLSDNISRLLRTI
>CR1-1_DR_pol#LINE/L2 1220-4303 [Danio rerio]
LAGKNSQNSHYSHLDSCSPHLNISNAYLANPIETVSVPRIIRLRNKRTVCSRKNLVRIKPEKPVESENTNFVKLGLLNIRSLAPKALIINEIITENNLNALCLTETWLKQNDYISLNEATPPGFLYKHEARQTGRGGGVASIFSDFLNIKQRNGLMFSSFEVLSLNVQLPDTIQKPMLSLALITIYRPPGPYVKFLKEFSDFISDLLVKTDKMLIVGDFNIHIDDANDTLGLAFMDLIHSLGIKQNVVGPTHRLKHTLDLILSYGIEVIDVDIIPQSDDITDHYLLLYKLCLPEISKPAPILRPSRTIVPSTKDEFINNLPDLSLFRNAPANSNDLDVVTSSMDAIFTSTLNTVAPIKLKKAREIKTIPWYNSHTRALKTATRALERKWKKTNLEVFRIAYKDSMSSYRRALKSARTEHLRKLIENNHNNPRFLFNTISKLANNRSSLEQTTPPQISSDDFMNFFSNKIEGFRQKIGDAKLSAPAYTPNPVNISLNHNNNLHCFKIIEHEELVKIINSSKPATCMLDSIPTKLLKELLPAIGEPLLNIINSSLSIGHVPNSYKLAVIKPIIKKPQLDTNNLANYRPISNLPFMSKILEKVVSTQLCSFLQTNNIFEVFQSGFRAHHSTETALVKITNDLLLAADRGCVSLLVLLDLSAAFDTIDHNILINRLKSTGVQGQALQWFKSYLTDRYQFVNLNGQPSQICPVKYGVPQGSVLGPLLFTIYMLPLGDIIRRHGISFHCYADDTQLYISTKPDETSELSKLTECIKDIKDWMTNNFLLLNSDKTELLLIGPKSCTQQISQLNLQLEGYKVSFSSTIKDLGVILDSNLTFKNHISHVTKTAFFHLRNIAKLRNMLSISDAEKLVHAFMTSRLDYCNALFAGCPASSINKLQLVQNAAARVLTRSRKYDHITPILSSLHWLPVKFRIEFKILLLTYKALNNLAPVYLTNLLSRYKPTRSLRSQNSGLLVVPRIAKSSKGGRAFSFMAPTLWNSLPDNVRGSDTLSQFKTRLKTYLFSKAYTQCIT
>CR1-1_FR_pol#LINE/L2 243-3047 via tfasty with CR1-35_DR_pol, 8 frameshifts. [Takifugu rubripes]
MAVLNVRSLLNKSFIINDLILDRNLDGILLTETWLGTDAPAVLTEACPPDFNFLFSTRGGRKGGGTASITRTEMSSSEVSFNKFPSFEHHAFVFSSPPILSITVYRPPQYSTSFISQFSEFLSIIYAKYNRILITGDFNLHINNASDPVSREFLNLLHSLDFKHVTQPTHNRGRTLDLVITYGLSVGGSSVVDLAVSDHFCVFFNITSFNQRRAPVRTVRRRYLTPEVAANFIQILQSTPAEILPAPCDFIVDTFNNKLKSTLDSVAPLVTKTVRTKRAPPWRNEEIRKLKRTCRSAERRWRKSKLTIHKEIFYQHLKTYNNTIKQARTSHFKKLISDNKNNPKFLFHTIELLTNGNFNRCPTTTTDTLCEAFADHFRSKIDDIRSSLLSQQILINNTPGSLLSPEETLESFVLVDARTLGRVFSQVRPTTCLLDPIPTPFFKTFYGFFEEHLLYMVNCSLQTGCFPTSFKTAVVKPLLKKSNLDPGVLNNYRPVSNLPFLSKILEKLVFNQVNDFFKSNDILERHQSGFRMNHSTETALLKILNDIRRNLDNEKLTVLVPLDLTAAFDTVDHHILLNRLKNLVGLSGTVLNWFTSYLTDRYRFFVSMDTCSSRIHETKRGVPQGSILGPTLFNLYMLPLGDVIRSHGISFHSYADDTQLYIAVAPDDTGPLMPLFNCILDIQSWMAENFLQLNQDKTEVLVVGPExSERETFTKITLEGILIPSSQSVRNLGVIFDSELSFIPHIKNITKVGFYHLKNIARVRPFLSQAGAEVLMHAFVSCSLDYCNALLSGLPKKSITNLQLLQNSAARVLTSITRGREHITPVLESLHWLPVRFRIDFKVLLLVFKCLNGLGPTYLSDLLLFYQPSRTLRSSGTGLLTIPHVSSKTHGEAAFSYYGPRLWNSLPENLRAAETVEIFKKRLKTHLFNQAFN
>CR1-1_LG_gag#LINE/L2 264-1001 Fragment? [Lottia gigantea]
MAGLLEHREALTRMIEEAVKVAVSTAIELFDKNLRLYVDGRLKCLDDRMCQIEESHHSVSITHDQFYDQLTDLQNKLDAKTIEFEKLSSKINSLEQYTRKAHIRIFGIVESDGEDCIAIAKKLFREKLGITSEISIDAAHRVGVPKGRGSGTNTEIPRPRGIIVRFIRRDERFRVLSNRKNLKGTGVVIVEDMTVENVKLLDSARNSRRVKSAWFTNGKVFVVGQNDYKFRLERIGDLNSKLPPFP
>CR1-1_LG_pol#LINE/L2 1944-5219 [Lottia gigantea]
FSLLNHVSSKVTLCLLFTLLNDTFSSILYYCFILIIRSGDIELNPGPTSTKLYDKISFFHLNSRSIRNKLDKIFDESHDNHVCAFTESHLDGSISDQSLIRDGFSIPYRKDRNCHGGGVLLYIKDYIFSKRRQDLESPLVESIWVEIHVLHKILLVGAIYRPPNSPAQVWQSIDASIELAFSSSKNIILLGDFNSDLLTPNSRLSNIILSNNLKNVCEKPTRVTSRSSTLIDVIIVHDEIDICFTDTVDFPNYISDHKGVHATLDLSIPSYHSFQRVIMIYSRADYVRLNDLIRNFDWGNCFENFDINYSCSKFYITLNKFIDICIPKKSVVIRPSDKPWFNSDIRKAIRLRDRLRKISIKSKNINDFNKYKTQRNRVNNFIKSLKSKFYVKLTDVINDPNSSNHEYKWNCMKFFLGTSCTPPLPPLVSNGAMVYSDADKAQLFNTYFASISNVTPTDNLPDFNERTSSKISLPIISEEEIIDLIKCLKNKKANGFDKISNIILKNIASSISYPLHLLFNKSLESGTFPSLWKEARVMPLYKKGESWDVSNYRPISLLSCISKLFERVIFKHLYNYFHENKLLYPYQSGFRPGHSTVHQLIEIYNDILVAIEKKQFACFAFFDISKAFDRVYHPGLILKLSKYGIGGKFLDWLSSYLTNRFQRVFLNDALSPAELLNSGVPQGSVLGPLLFLIYINDIQDVLQNLSRLFADDTAVGCTKSLISEIEISMNNDLSKLYQWSSDWLVSFNPSKTKVVLFSTKPISQLPNLILGQEPLEFVPFHKHLGITLSNDLKWSIHIDTICKSAYKLIGVLRKLKFTLNRKTLLSIYTTYVRPRLEYACEVWDCCNISDLDRLEHVQLEAARVITGLTKYCKIESLYFETGLHTLSERRKTRRLSLLYNIVHNNAPNYLIDILTPIDATPRFYNLRNSNEIPIPFARTTAYQRSFFPSTTHDWNLLDAQLKDSPSIKAFKINLKRSFLSNSAPVYFDAGDRRENILLTRIRHNCSGLNADLFKINVITNSSCKCGYHTENSFHYFFDCQIYRAQRLVLLSNLSDYVVNLELILCGNRNFSVDTNIIIFKHVHDFIKHSKRF
>CR1-1_NV_gagpol#LINE/L2 17-3724 Appears like a gag-pol fusion, with 3end of gag and 5endof pol missing [Nematostella vectensis]
MAATMFFALCLILCMIGTVPHENLSINEMDSSSPKRPSQHQFGFFCTVFKPLPVLLRLAPSGFHRSTRSVTKISKHGYTSLAIPGHDPPIDVTIFMDISINPGPEIHLDYSSRPAMDLHTASYTKTTPTFSRESLYSIRRQMRTRNLFLKPVNISLFCTLKHLGIFRFRGKRAGKRKRSEANLQLELQLHVNTVISSDPGRNHSIINGTKLCENNSQHLPVLITTRHDYSTSANTHNARNSSNLLKINSVKITPDSAPRLHLATWNIRAMNRKAASICDLVISKRIDVLALVETWLTAENNSKSTVVEDTSTRLPVPNCSDPTVADVINTLRDFDFIHLPRAGRGGGIGFFLRKALNVKPNTSTVFKALEYVDLSITASSSSMRLVTVYRPPPSKVNKLTTRMFFDDFSVLLEHLAMDPGKLIITGDFNFHIEDPGDADAVRLLDMLDAAGFEQKVVGPTHRKDHTLDLVVVRDGNLSVRGRPEIVAFPNSVSDHSAIICDVDMPKPCASKKILHRRPLRKINFDSWCNDIRDSAIYSSAPSDDSDCNVLCDQYNTVLNHFIEKHAPVRTFSVTLRPYSPWYDDSLRLLKRQKRKAERRYVSSRLEIHRQVYEEKCRAYSTALNVAKRNFYKDQISGSNQTQLFRLIDGLFRVKPVPLLPSYESPQALAEDFILFFTTKIQHLKDNLRSSPLLTMEMSVTPAQPQCVASFPEFSAVSVSYIRDILQQSKPKSCILDPVPTSVLKQSIDVIAPAITSIVNASLSSGVFPTSLKGGVINPSIKKQSLDREVYPNYRPITNVAFLSKTLERVAANQTMNYLIPNGLLAKLQSAYRPFHSTETALLRVFNDILTAIDCQQEVVLVLLDLSAAFDTIEHSALLSRMQHRYGINEIALQWFKSYLTGRTQQVLIDGVLSSSQPLRYGVPQGSVLGPLLFSLFFAPIEDVVRAHGLGAMMYADDTQLYVSICPSEDRSSVLSRLEVCVKDILIWCTSNGLACNPDKTEIVHISSRFTSTNIIPEIDVDGHFIKPAQAARDLGVIIDSSLSMTKHVNSICKSAYHSIRNIGRIRKYLDRNNCEQLIHAFITSKLDACNSLLSGLQEKEIAKLQRVQNSAARLIVGAKKRDAITPILKELHWLPVASRIDFKILTITHKALHNQAPEYITELLTPYTPSRSLRSANKNLLVIPKSRTKTYGDRSFSNFAAKLWNSLPLHIRNTDCLSKFKSSLKTYLFCKHYNN
>CR1-1_NVi_gag#LINE/L2 406-1518 Fragment. [Nasonia vitripennis] 
SVNCRKKNILLREKLLNKQNESAAASFSYAEVTSFPKLLQKKVPKITVKNVSNKAVDVKKKVIECLVTEKKIQTKNLYVNRKEELVINCLNSESAMLTESVLKHNLEGICEVRKDTLKNPKIKIVGIDNYSNMEMEDIEDDINMRNFGSFTNKGQVLHMYKSNFSSLTTVLMEVPADIYKFIKENKSRIFVGYQNCKVYDSININPCYNCGRFGHNGNKCNNSSVCLKCAEKHKTSTCTNNAIKCLNCVFSNSKYNTKLDVNHAANDTNQCNILKKKISIYIDSTDYPIRPTLPAVHQVYRERDNTTDTHNPTTDNTMKQPLQELPKSTKQKHERSEAAKQQQLQQLKMARTPQQQAAPAKNTRLRSSKT
>CR1-1_NVi_pol#LINE/L2 1556-4133 Fragment via tfasty with CR1-78_HM_pol, 3 frameshifts and 3 stopcodons. [Nasonia vitripennis]
YKRIQCRKKKTYSGIGDLNKTISNKNDIIMHLNVRSMNANFDKVKIFFESLIVKPSVVVLSETFEQVNHTFFxLIGSNYEYESYYNDSRINRNDGVIVFVNRNLVQSTEIVQQGRIRIVNTKINLSNNSNIEISSMYRSHGIPKTEFILDLNKYLIKKRNIKNHLVIGDFNIDILDCDHVSQEFLCNFFDKGYIPGFVGITRPPVGIAKGSCIDNIFIKTDNLNTITYKLKLSITDHYPIFIALNKMKIVHNKPTIVLNYKKLINSAETRNWNEIITMQDPNLATDKLLYEIKQCIELSKMNQKRIKQVGRKNWITDAIIKSCETKEFLYNLWKLDINNEQLKTEYKTYSKILEKVIKDAKFRYDKKLVEKNANNPKKLWEIIKINLAKKESNETISCIKINDIKVTEKVEIARNMNKFFCEIGQKLSNDIVQPNNAEFRLPDINANSIFLKPTNMNEVKNIINTLKIKNGGVDKIKAKSLKVICNYIAVPLTHIFNLCIEKAIWPDALKKAEIIPIYKAGEKHNITNYRPISLISNVAKIFERIIYNRLYDFIQKNNIISKHQFGFMKNIGSKNALNYITQILYNNVDKTIPTIVTFLDLAKAFDTVDHKLLLNKLYCIGIRGQALDLLRSYLNNRYQTVKIDGVESDSLLISMGVPQGTILGPLLFIIYINDVLKEIPLESILSYADDTAIIATGNTWIEAQKSMNEFLTVIYKWLAVNKLSLNVDKTVCMTFGSYCDSVPKHIDVRIQNKKIARVENYKYLGIVIDYNLKWVxHTSNIYIIKKTKYLVYIFHKLSHTMSTETLRMIYYAFFHSIISYGIVAWGMVHIEITVIYYKVYREKFSRLSTKILLVYKIVH
>CR1-1_SP_pol#LINE/L2 3-959 [Strongylocentrotus purpuratus]
LFLLYINDLPNCSSELKFILFADDTNILYSTDNYSSINDDLNNKLTNVSYWFNSNRLSLNTEKSNLIYFYNRKSHIHSNISKHLKISMNDKIIQRVHTVKFLGVFINESMSWTDHILYITNKVSKSVGIVGKLRTVLPQSILILLYNTFILPYLTYCNTVWANTYKSKLNSLFXLQKKVVRICSLTSYRAHTRPXLFMNLKFLDVYQLNKYCILILLFKHNQGFLPSSLNNMLSLNNAIHTYNTRNXNKYHLWVVEKSYLLFSFRHKAPTIWNTLPNNITSIMNYNGFKRSVKQHLITCDLGRILFHFIYNVCVSVFL
>CR1-1_TCa_pol#LINE/L2 17-2293 Fragment, via tfasty with CR1-17_SP_pol, 2 frameshifts. [Tribolium castaneum] [Tribolium castaneum]
KYFLSYNMYEMVQENTRITARSKTRIDNVFTNMTFNNFKIEVLEPHISDHMGIQLTTSIKNNTNNTDAVKNVRILNVYACNRNDINAQWSNFINIFNDKFNECFPLKQIKEKKTRKXYKNDPKVKYYKYYLDLLSVISKCDDKYVILYKYLKXKYDMALRAARKNYYGQRIQNADNKSKCAWNIVNKICGRSKKCCEIQIEGDPKQIVNDINQYFINSAPFVRSKSNNNTISSNAKTMYXYPVTSQEIITIIQNLKNKKSAGFDEISNNIIKYCNEEISAPLSFVIQNSLDYGIFPEQLKRAQVLPIYKKGDPTLISNYRPISLLSSFSKIFETVISSRITNFLMKFQLLNSSQHGYIKGKSVDSAIFSFTNALLDKLEEKKVVLGIFLDFSKAFDCLDHNILISKLKKYGIRGIMLKLITSYLNNRYQQVTITKNSTVYTSNKLLIKQGVPQGSILGPLFFVIYINDLLNILTVSDNNSAVNFADDTNILIWGENMTDTMKEAKICMNKVINWTKENKLVLNFEKTYGIHFAICNHKNTEKPNKIVISSKEIELIEKTNFLGICIDHKLSWTNHIDNLLKKLNSVHFTIRVLKKYINIEQLRIIYFANFQSLLSYGIIFWGQSGKISKVFVAQKQVMRTMFNLKYNETCRNIFKSNNFLTVTGLYIYRLLLFFFKQNLLFNVTNDHKYDTRKVDLEYPRHKLTLTEKNSYYAGIKLYNSLPVHLRTPCNLNLFKKKIFDYILDLEPYTLNEFYNRQVF
>CR1-1a_AG_gag#LINE/L2 441-1775 [Anopheles genus]
MECLACSAVVLINDDPILCAGKCGGNFHRRCVTPSLSKTAAKIINENKNVLYMCDRCLEHKSGLAGMDVDVSGSYDLLTQSIKNLESNVSVWISSALEKGIETLKTELCAQVERKLEQTLRESLSAVECSNKAKEALRATFDDTKARETVEDESWATVTKKRKRTNSGNSNVQTIINRFDTGNVNSTPKISDKVTGPILANKNKNSKTLVIVPKVGQSCDKTRADLRAKLDPRKQQVSEFRNGKDGQVFVQCSAQVKLDELRKEVENILGDEYATDLPLSRVKIIGMSEKYTDSHLVDLLKSQNEGIPWKQVKVIGMFENKIYKYQKYNAVLEIDYESDLCLAKLGKINVGFDRCKISKSVHVMRCYGCGQFNHKSTECKNKQACSKCGDEHKTSECTSSSLKCVNCVLANSVRNLKLDVRHAANDYNCPMFKKQIERRMQLSQ
>CR1-1a_AG_pol#LINE/L2 1776-4574 [Anopheles genus]
QVGEELGRFREILYFNVAGLSSNYAMFRETVEKVQPLLVLISETHVIEEEAFQQFHINGYRVVSCLSHSRHTGGVAVYARSEIVLKVIFNESLEGNWFLGVAVSKGMTAGNYGILYHSPSASDSRFVDILEEWLDRFLNFSKLNIIVGDFNIDWLNVEKSAKLKSLMDSVNMKQKVNEFTRIARQSRTLIDQVYSSTDSIKVTTDPLLKISDHETLVLNINVKRCETIQRKFKCWNRYSKFALCNHVSQGLRQEAPSFNEAADLLWNTLKKAMGTLVEEKTILSRETSRWYTLELSRAKRKRDEAYQHFIRSNSGYDWTEYTRLRNTYSRNLKTTRRNYFSGEISKHKGNSKELWKVLKSLLRPEESRVSVVKFDGLVESEDSIICQKFNLFFVNSVLDINQNIADARAPDSLFCNDAPGNQFKFQKITKEKLKTICFSLSKTAGIGNVNCNTIQDCFHVVGESLLIVINQSLEEGIFPETWKESLVIPIPKVSGAASAEEFRPINMLHVLEKVLELVVKEQLVQFLTRNDLLISEQSGYRQGHSCETALNLVLARWKVLMDRKESIVAVFLDLKRAFETISRPLLLQTLRRFGIVGKELNWFENYLKDRTQRTVFGNSISEPIENTLGVPQGSVLGPILFIMYINDMKQVLKSCEINLFADDTVLFISHKDIKQAESLINFDLNALDGWLRYKKLALNVKKTSYMVMTAGVLDSPPSIVINKEPIERVRQVKYLGVILDDRLKFNTHIDWVIAKVASKCGVISRLAKDLDFFGIVNLYKSLISPHFDFCSSILFLGNKGQIKRLQRLQNRIMRLALGCGRRTSSFVMLDILQWMSVEQRIVYQTMTFIFKLLGGLLPGYLGERIVRGSDVHRHCTRRANEPRVPNLISHGARNSLFFKGIQLYNRLPGEIKNASNLPDFKRRCAAYVKQTV
>CR1-2_DR_pol#LINE/L2 979-4008 [Danio rerio]
RPTRVKTIDSTCATPPSKDTDKALEYFTVLFYFTLIFCCQCTFIMCFLIPVVTNTRKTREVRCRRNPHNLRSIHVSTISQLSLSVGLWNCQSAVNKADFITSIATYSDYNLMALTETWLRPEDTATHATLSANFSFSHTPRQTGRGGGTGLLISKEWKFTLIPSLPTISSFEFHAVTIIHPFYINVVVIYRPPGKLGHFLDELDVLLSSFSNFATPLLVLGDFNIYVDKPQAADFQTLLASFDLKRAPTSATHKSGNQLDLIYTRHCFTDQTIVTPLQISDHFLLSLNIHITPEPPHTPTLVTFRRNLRSLSPNRLSTIVSDSLPPSRKLTALDSNSATNTLCSTLASCLDRLCPLASRPARASPPAPWLSDALREHRSKLRAAERIWRKTKNPAHLLTYQTLLSSFSAEVTSAKQTYYRLKINNATNPRLLFKTFSSLLYPPPPPASSTLTTDDFATFFCTKTAKISAQFAAPTTNTQDTTPTPHTLTSFSQLSESEVSKLVLSSHATTCPLDPIPSHLLQAISPAVIPTLTHIINTSLDSGLFPTTFKQARVTPLLKKPNLDHTLLENYRPVSLLPFMAKILEKVVFNQVLDFLTQNNLMDNKQSGFKKGHSTETALLSVVEDLRLAKADSKSSVLILLDLSAAFDTVNHQILLSTLESLGVAGTVIQWFRSYLSDRSFRVSWRGEVSNLQHLNTGVPQGSVLGPLLFSIYTSSLGPVIQRHGFSYHCYADDTQLYLSFHPDDPSVPARISACLLDISHWMKDHHLQLNLAKTEMLVVSANPTLHHNFSIQMDGATITASKMVKSLGVTIDDQLNFSDHISRTARSCRFALYNIRKIRPFLSEHAAQLLVQALVLSKLDYCNSLLAGLPANSIKPLQLLQNAAARVVFNEPKRAHVTPLLVRLHWLPVAARIKFKALMFAYKVTSGLAPSYLLSLLQIYVPSRNLRSVNERRLVVPSQRGKKSLSRTLTLNLPSWWNELPNCIRTAESLAIFKKRLKTQLFSLHFTS
>CR1-2_Lme#LINE/L2 2-2845 [Latimeria menadoensis]
EEGEMVTRAVFLNARSICNKTAMIYDLLDDGIDLAFITETWLDDCAAPILAAAIPQGFLVIHCPRLHQRGGGVAICFRSTLKCTRNLWKETSSFEYVIAICEAGVNFKILLIYRPPRWNAEFLNEFSELISWLVLESPNLIVLGDFNARMDDSSDNLASELSHLMQALGFTQSVNSATHEGGHVLDLVFSMGISISNFRVNPVAWSDHFLVHFDVGVAPPPQKILRSYSFRPKHLLDSNKFREMFFSSESLFSKGEGVDFLVDSYNSVLSTNIDLLAPLCTRLECSSHRAPWFNGDLRLMKASGRRLERRWRVSGLVEDRLKFRQWLNYYQKSIREAKSSFFASVIDSEKNKPAALFRVVNQLLNPSCLRPXDTSLSQSCNSFLSFFSNKVDLIRSDIISNHSXCGDDVICRDDSNPLVLWNSFPPISDAQIVQVLRGLKATTCEFDPCPSWLLKEGLKDWVPLFIRIVNASLEEGILPFALKRAQVCPLLKQASLDPDDLGNYRPISNLPFLGKVIEKVVAGFLREHLDKFDFYDRFQSGFRPGHSTESALVKVVSDLLTSMDKGLVSFLVQLDLSSAFDTIDHGILLDRLEHLLGISGSVLSWFHSFLRGRSQVVRIGYSVSAPAEISCGVPQGSILSPMLFAIYLLPLGDIARRYGVGFHCYADDVQLYLAFPANNTGAVSVLEQCLDEIWSWMARSWLRLNQKKTEVLPVGREQVCENLFDTLSPPSINGEALRLVKVTKSLGVFLDSSLSLERQISSVVSSGFFHLRNIRRLRPFLPHDSLATLMHAFVSSRLDYCNALYAGLPLKLIHRLQLVQNSAAHVVKNVSRFDHITPILRELHWSLIRWRITFKVLVLVFKALNGLGPXYLRDLLTPYVPARPLRSLYGNLLVVPRVRXKVGERSFSFYAATSWNALPTDIRSSPSLSTFKSSLKTFLFXSAFNVV
>CR1-2_NVi_gag#LINE/L2 666-2003 [Nasonia vitripennis]
MAPGRNKPPDRCRSNFACCKHKPATTAVCVICDEAYHHSCLKQKNENYKFVGNNLIVCPEHSYQNVTSKIDEEVLSESASLLIAQIKLKKSEDVRNDLLAETSDKTQDLQEAESIEESDIELLRTENMLLKRLVSELTEKNDLLKEKLQNIKSGTDVKLRTYSDTIKYSRATQKKVPKISVKKSNNSNIDVMKSVIECLTAEKNIQTKNIYVNKNDEVIISCLNDNSAELTETVLKEKLEDECNITKNELNNPKIKIVGIDNYMNMQTKEIEKDINERNFSNFEKNGEVLHMYKNKHNNLSTVLMEVPAEIYKHIRENSNKIFVGYQHCKVYDLVNICPCFKCGRFGHNAKKCRNDTLCLKCSETHKTSDCDKDSAKCINCHYSNTRYKSKLDTKHFTYDSSQCSILKKKLIDISTPSIIPSNPPYRQLNQSIATWNQQTGSKYL
>CR1-2_NVi_pol#LINE/L2 2206-5092 via tfasty with CR1-65_HM_pol, 1 frameshift and 1 stopcodon. [Nasonia vitripennis]
MDTFDYLDKFQNKSMQKERTCSNIENFNKVINNKKDIILHVNIRSINANFDKLKILIESLAIKPAIVICSEVFEQVNYNLYQLNGSDYDYIIYYNDSRINRNDGVIVFVNNNLVQHTEVVEAGRIKIINTRITLNDKSSLEISAMYRSHGIPKTEFILDLNKYLTKKRNVKNHLVIGDFNIDLLDCDHYSQDFLCNFLDKGYIPGFVGITKPPIGRAKGSCIDNIFIKSHNINTATYKIRHDITDHYPIIIAVNKLKEVTKKPYVFLNYKKLTNYAIARNWNEIMSMDDPNLAVEKLLNEIKLCVELAKTKKKAKKHTGRKNWITDAIVRSCETKEFLYNLWQLDVQNDQLKTQYKTYAKILDKVITDAKIKYESNLIQNNSNNPKKLWEIINMKIGKVKKCNDAINYIKINNQKITDKFQIAQNMNTFFCDIGRNLSANIVKPVNTELKLPAMNPISIFLKPTSTAEIISIINALKLKNGGVDKINAKTLKLLCKHIAGPLTHIFNKCIEKSIWPDSLKRAEVVPVYKSGEKHKITNYRPISLISNVAKIFERIIYNRIHDFVEQSNIISKQQFGFMRKIGTKDALKYITNALYNNVDKSKPTIITFLDLAKAFDTVDHSILLAKLYCIGIRGQALDLLSSYLSDRYQVVKIDGIQSDSSVVNTGVPQGTILGPLLFILYINDVLREIPPPPPRGYNLYADDTAIIATGKNWIEAQDTMNNFLSVISEWLALNKLSLNVGKTVCMTFGSSIGSVPAQVNIKILDKNITRVEHFKYLGIVFDSNLRWENHMKHIIGKTKYLVYIFYKISKTMPTETLRMIYYAFFHSIISYGIIAWGGAYRNSRDQVQKLQNKILKIINKNKFPSHDNPLNIVQLFALESLKLHYYDLKEKYLASDSITRNRSIIIPKTNKRISNKNSYMKAINIYNELPNQLKVLNIEKFSQKRKIIEWIKSNCxKNIFIY
>CR1-2_SP_pol#LINE/L2 1-811 1 frameshift [Strongylocentrotus purpuratus]
VSFVSDNNIENLILDFXNELLKINSWLISNKLIVNTXKTHYMIFSNMFIDRDTLVVSLNDNVINRCSSLKFLGVTIDSKLSWKEHIDVICTNISKGIGILNKIKHFPSNILIMIYNAIISPYFNYCNLAWGSSTDHAMRRLLCLQKRAIRLVLHADYFAHTKPLFLKLKLLNVLDLCNYSFAIFMYLCFNNFIPISLSSKFCLNSALHSYNTRSSSNFHLNKIRLNITKKSIFFKGPQLWNNIPQDIKSSPSINVFKRRYKSFLIQQNK
>CR1-2_TCa_pol#LINE/L2 183-2099 Fragment [Tribolium castaneum] [Tribolium castaneum]
CLSTTRKQYPTEQNKELYTEYKNKHLLLLNSTKKSFYENKISVSDNRIKTIWSIIKSETKSVTNQLKLPTNVSADNFNDFFLHNPENIIKNLTNGHNDSHTYLNKKYIKTNASMFFQPVIEDDIRIIINKLKNKTAEDIYGISIHLLKVSATPILSIITNIINCCLSEGVFPSKLKISRVLPIYKKGDENDLKNYRQISILPAFSKILESVMCQQLVNFLEKNKYLSQQQFGFRKGFTTTDAILSLVKDIQKAFENKQTYVGVFTDLSSAFDCVDHEILLDKLRFYGVRGTCLKLFRSYLEDRQQYVKINASLSKAGHIKYGVPQGSILGPVLFLVYINDLENSMDKNILTIMYADDTSLGIPINKKKNVVPIKERMIRDADEWFAANKLALNKTKTVTKVFELQSQLKQTEHIKFLGLFLDNKLSWAPHVYEVCNRLSTAVFAIRKIRVSVNEYAALSTYYALFHSQINYSILLWGDAAYVHLHKILVLQKAAVRAIAEICSDVSCRAYFKKYKIMTLFSLIIFHKVYDVRKNISSYPSLADVHSHDTRNKTNLVNPRFRLAKSDNLSIRLYNSLSQNLKDQHLPLKTFKTKLINMLTECSLYSINEYLCVCVCVCYHYIFILLTSLILILLLLLLL
>CR1-3_DR_gag#LINE/L2 92-1804 [Danio rerio]
AYQHSAQTKQLEDQHRIYKLSGVQLYFYLEELSSKQSSRYQLLSFLRRENTAVKMALDHIDLESHCCTNCHKLLQKIAVLETKLLAIQPELPNYTGPVHRGASQHSAGKPYKSTPATVLRTEKQIETVENQRELWHKQGARPKGTRGVRSQRSYAAALAFSTPNTARTQIQLQNRYEVLSNMGEESPNAVRQRSHDSAINSAWNRGSRPTRQRHSAPIATEIRTLIVGDSIIKNFRSRSTMTYCFPHATVSDVNKELENILRKHETAKRIIIHVGKNDIRKEQSELLKRDFCKLLETVERLKIQPFISGPLPARGTNMFSRLLGLNAWLQKTCNKKGLNFIDNFNLFWNQRQLFTSDGLHPNKLGAKVLKDNILFSLHHPSAVYATELNCTHTPSKCPDDHRTSNQLLSGLVADESPKDRDNTTQPQQPPITDKLPSAPCTLSSTQADCDASEQHQVSALIDDPQENSQVNISQQPETPDPQPLSPDTFSLSSCSPLLDFSKKMEELVCAGTKLSHSIAASPQLATKSQQATRPSLSPPRPTPRKGLRSLRQRQVPKNTSSLAGELKNCH
>CR1-3_DR_pol#LINE/L2 1805-4720 [Danio rerio]
CVSGACLDNSVFIRCLQNKQEPSVSVAFSTQICVLLRDRKPKTLSDRIANHSNLVSIKCISETSVVKTTKTVKLALLNIRSLNNKSLLVNDFINTNCLDFMLLNETWLDDSCSAAVLNEAAPLNFDFLSVCRANRRGGGIAALFKDVYECKQVSFGDYLSFEYLSIALKGSPRILLIIIYRPPKYSPAFIEDFTELLSIVTSEYDYFSIAGDFNIHIDNPEINAVKELMTVFNTFDLTQHVQGPTHNRGHTLDLLITKGLHISSTVVKDVALSDHFCIFFDILITPAIKDRSVSVRKRCINENTSEQFMKAISLAPSISADSVDSLLDLFNSKIENVINDIAPVKVRKRTGKERVPWRNSRAVQMKKRQCRKAERMWRKTKLVVHYNIYKDSLQAFNVELKTARQTFFSNLINNNVNNARTLFATVERLTNPPSRIPSELLSVSKCNEFANFFTDKINNIRKAISSSNQPSCVDIKQTQPQLEKSDIMSDFMAINGKILEEMVQIIKTSTCSLDTLPTSFFKTVFTCSEMDLLKVVNDSLLSGIFPNSLKTAVVKPLLKKSNLDNTLLSNYRPISNLPFIGKIIEKVVFNQVNKFLNFKGCLDNFQSGFRAHHSTESALIKIINDIRLNTDSGKITVLVLLDLSAAFDTVDHSILLDRLENWVGLSGTVLKWFRSYLEGRGYYVSIGDHRSRWTPMTCGVPQGSILAPLLFNLYMLPLSQIMRKNQISYHSYADDTQIYLALLPNDYSPIDTLCQCIDEIKNWMCQNFLQLNKEKTEVIAFGNRDEVLKVNAYLGSKGQTTKNKVKNLGVTLESDLSFNSHVKAVSKSAYYHLKNIARIRFFVSSEDLEKLVHAFISSRVDYCNGLLTGLPKKTVRHLQLIQNAAARILTRTRKSEHITAVLRSLHWLPVTFRIDFKVLLLVYKSLNGQGPQYITDMLTEYKPNRSLRSLGSYKLEVPRVQSKQGESAFSH
>CR1-3_HM_pol#LINE/L2 931-4194 No obvious gag in first (low complexity) 930 bases.  [Hydra magnipapillata]
MKICHHCKFCNKKIKDNHRAIQCDCCSFWIHAKCIPVDKHAYNMLSNDSSEWFCPNCISNNMPFGVLSDLELKSTLSCKNPSNKIKFHEPPDYLKNLFKTMNNVFNPTTKCKYLDVNELNKSINPGTEIYLHLNISSLPFHINDLSSFVGTINTPPMVIGITESNLYANDSNITDITIQGYNIEHCPTESKKGGALLYLNSNLNYIVRSDLQIYATKFLESIFVEVIYPLKSNTIFGCIYRHPSLNITEFLSIHFNPLLEKLSHEAKNIVLMGDFNIDLLNYRESQVISNYFESLCSHSLFPTIILPTRVTAKTKTLIDNIFMNSFPTDIVSGNLTISISDHMAQFVCIPNNPPIKKKVKMFKRSFKKFDSDSFIQEISDINWELLIKDDDNINESINFFLKTFEKILDRYAPYKELTKKQIKLQSKPWITSGILKSISNKNILYKKFTRSKNVNTKNILFTKFKLYRNKISNLLRYSKKLYYASFFNNNINNVKNTWKGIKEIINIKPSTSTKSFNLKINENVISDHTSVANIFNNYFTTIQDELLKNTVPSKCAFGNFLKIPSINSFFIEPVTENEVANLIKDTLKNNKSLGPNSLPTFLLKLVSHIISKPLCTMMNNSFKNGIFPEAFKVAKVIPIHKMGSYLDYSNYRPISLLSNLSKLFEKAMFQRLEHFLEKHKFIYKHQYGFRNKHSTTHSLIEITEKIRQAIDNKHFACGVFIDIRKAFDTVEHTILLEKLKHYGIRGIPFLWFSSYLCNRTQFVSINGINSGLAKSFNGVPQGSVLGPLLFLIFINDLNVSLKFSTAYHFADDTNLLLINKSLKKLNKNMNHDLANVVQWLRSNKLSLNSKKTEIIIFKSAKTKINKQLNFRLSGQKINPVNSIKYLGIKIDSNLSFASHLQDLALKLSRSNGILAKIRHFVNHETLLNLYHAIFHSHLRYACQVWGQSKQLAFLRLTYLQNKALKLIYFQHTNSNCSILYFLSKVLKLCDLIQLSNCLFVWNQNHNNLPLTFINFFSYRENCKYILRSALNFKLSVPKYRTVHYGYESIQHKSIQTWNNLPSQLKSLKSFSKFKTALFNHFLEKYSL
>CR1-3_IS#LINE/L2 1-2844 [Ixodes scapularis]
SIDCLVISETNIKDCDEALFQNKSFETITNNRKNKRGGGIMVMVNKKWNIKNSKKITFSRAEAVQIDIENEKEQIQILAVYRAPQGNIAEFIDDIGNWIKVENSKNLIITGDINIDITKQNNLVDKYPNCLAEHGLQSMIKDITREEILGLQLARSCIDHICIRSKKYCKAHVIAEKLADHYFVGIAIPELGIPESERNQVTTYINNAKVDKYVREINWESIANEEDPEIIYNKIKNAFTDIYKKSSEQVTVKKRKTGNQWVTKEIDQLIRKKNKAWRLLKSSPGSSQRKEEYRSIRNKVTSIIKKEKRNYFRKKFEDTKDLSQCWSVINQVLGRNTRLSIDQTIKNNFGTYCNDEKIANDFNNEFIQSIELLCNHGYQNETETRARIGNSMYLPEMTEEDLVEIVSNMKTNKAVGTDSIRPRDVKENVNIIKTVLLALYNKSLAIGKVPSGLKTAVVRPIYKKGDKKTLLNYRPVCILPVLNYIMEKYVYEALNGFINKYNLLTKTQYGFKTNSSTITLLEDFSDFVNKKLDEGNYVLALFIDFSRAFETERHETLIDRLFSLGVRGKLLDWFKDYLSGRTQVVKIASSFSEKRLVKQGVPQGTVLGPILFNIYINDIVNVHLNSVLFQFADDTVILYADNDYTTAENKIQEDVSKLVKWYKENQIIINTKKTELMCFRSPQRRTQMEGNIKIHSDSCKNCNCEPLKLTTSVKYLGLYIDEHLKWNQHVEHICKRLRSVAAQLYHLRSCLPQPILKMIYHSLGKSVLVYGITIYGHCAKYLQYKINSILNRVVKNLYVDEHRPLHYMYQHLDIQKLSDLLELNIIIQHQFSDKYKTKYIPIRNLRPKNLFQEPKVKTKYGKAVRASYVPRVFNKLPPRIIEITKISELKRELKQWFINRKEQQLAEEKSTRGWNLNSVVLCVLFCRELWSKGVYMSCFHFFCLFARN
>CR1-3_Lme#LINE/L2 205-3147 [Latimeria menadoensis]
RGLYWRVRPFNRGQFLIPIKLRALGMSPSLTRLDNGDKVTRAVLFNARSICNKTSMIYDLLDDGVDLACITETWLDECAAPILAAAIPQGFSVIHCPRLHQRGGGVAICLRSSFKCTRTLWKDTSSFEHVIATCEAGVNLRILLIYRPPWWNAEFLNEFSELISWLVLESSNLIVLGDFNTRFDDSSDTLASELFHLMQAFGFTQSVCSATHESGHMLDLVFSKGISISDCTVNPIAWSDHYLVHFDFGAAPPPQKILRSYSFRPKHLLDPDIFQEMFFSSESLFSECKGVDFLVDSYNSVLSTNIDLLAPLRTRLECPSHRPPWFNGDLRWMKASGCRLERRWRVSGLVEDRFRFRQWLSSYQKSIRNAKSVFFASVIDSEKNRPTALFRVVNQLLNPSCLHPSDTSVSQSCDSFLSYFSNKVDLIRSDIISDHSIFGDENFGRDTSNHAILWDRFSSVSDALIEQVLRGLKATTCVFDPCPSWLIKECSRDWVPLFTRIVNASLEEGYLPSALKRAAVCPLLKQASLDPGDLGNYRPISNLPFLGKVIEKVVAGFLREHLDQFDFYDRFQSGFRPGHSTESALVKVVSDLLTSLDRGLVAFLVQLDLSSAFDTIDHGILLHHLEHLLGISGSVLSWFRSFLEGRSQVVQFGSSFSAPAEISCGVPQGSILSPMLFAIYLLPLGAIAERYGVGFHCYADDVQLYLAFPANSPGAASVLEKCLNEIRSWMAGNWLRLNPKKTEVLLVGRDRVCESLLGTLSPPSINGGALRLVKVTKSLGVFLDASLTLERQISSVVSSGFFHLRNIRRLRPVLPHDSLSTLMHAFVSSRLDYCNALYAGLPLKDIHRLQLVQNSAAHVVNNVSRFDHITPMLRELHWLPIRWRITFKVLVLVYKALNGLGPAYLRDFLTPYVPARPLRSESGNSLVVPRFRSKLGERSFAFQAAISWNAIPAGLKSSPSLSIFKSHLKTYLFESAFNTV
>CR1-3_SP_pol#LINE/L2  2-598 via tfasty with CR1-1_DR_1220-4303, 2 frameshifts and 1 stopcodon.  [Strongylocentrotus purpuratus]
LGVVLDSSLTMSQQVTSLCKSLHFHLYNIYRVRRMLTDEACHHAIRSLVLSRLDNANSLDxSCNVSDIDRLQRIQNRAARIVSNARKYDHVSPFFKQLHWLIPVHKRIMYKVALFVYKSMYNLIPSYISSLFCPIQQSRYSLRSRSDPLLLQIPRINSKKGQQNITFSGPTIWNSLPLSIRSCSSVGSFKRNLKTYLFSL
>CR1-4_DR_pol#LINE/L2 2-1699 [Danio rerio]
LCNSFLTFFETKIKNIHHQLHSNSSAPDFSQHVSEIITHFSFDTFTLPSTAEIVGHIRKSKTTNCLLDPLPTCLVKTCLPSLSTLITNIIHKSLDSGSVPSLFKTAVITPVLKNLELIHPIWPTTDQFPNLPFVSKILEKCVASQIHNYLSINNLFELFQSGFRPNHSTETALVRITNDLLLAADSGLLSILILLDLSAAFDMVLHEVLLNRLASLGISGTLLLWFKSYLEDRTQYVQIKDFKSRSQIVTTGVPQGSVLGPLLFIIYLLPLGHIFRKYNIQFHCYADNTQLYLSTKPSCSFPPSALSRCLAEIKIWLSANFLKLNSDKTEALLIGTKSVLDKADNFTIDIDNSTIFPSVQVKSLGVILDSTLSFEGHINNITRTAYFHVRNITRLRPSLTTNNTAIFIHALVTSRLDYCNALLSGLPSKLLRQKLQLVQNHAARVISRTPSHEHVTPLLYQLHWLPVKYRIDFKILLLTFKALHNLAPQYLTELLHIYTPSRTLRSANNFTLVPPRTRLSTMGDRSFSSMAPRLWNSLPLDLRSSDSLHTFKSRLKTHLFKQAFL
>CR1-4_HM_pol#LINE/L2 572-3694 CR1-4_HM_gag (1-569) incomplete, broken, and very similar to CR1-18_HM_gag  [Hydra magnipapillata]
IILYSIYFVSITFRVVMEDIKFHDLSFKAFQTNKNILLENNSDPDVNFFNTDEIIKNICPSYYNSDISNVTANLDINAFSILHLNIRSFRKNFDKFKDFLFGLEINFKIICLTETWCRDKQIEKDSNYQLKNYTVIHQLRNSETIGGGVCIFIHNSLNFKPLTEFSVISNDCESLTIEILNKVTKNVIIHVVYRPPSGNNKFFEKHFKKLIKSKVLCDKRVFFVGDFNYNVLDYDTNKNVKNFMNIIFQNGFIPTINKPTRITRNSATSIDQIIINEYTKNKIKTGIIISDISDHFPIFIIAHKSVEHTPHKKILITNRVYNDISMELFNNSLFSENWDDILQIQTAETAYNSFLRIFKDHYDKAFPVVTKIIKTKTFINPWITPGIIKSSKKKQRLYEVFLKKRTYVNELRYKKYKSHFESIIKLSKKLYYSNKIIKFKGDTQKTWQVIKEVIGKKTIMLNGLPKKLNYNHQDITKESLIAKTFNDVFVNAGLNLASKLKHSDFNKEKYLTPSKSIMENAELTEKELLDAVLSLKLNKSQGVDNISSNVIIKCIFYIKKILLHIFNLSFKQGIFPKKLKIARVIPVFKSGDNTNISNYRPISILPCFSKILERIMYNKLYSYLEKNNILYNKQFGFKTGHSTDHAILHLVQIIFQAFDKNKFTLGVFIDLSKAFDTVDHSILIKKLENYGIKNINIAWFKSYLSNRKQYISFGNKKTNNMTITCGVPQGSILGPLLFLIYINDLSKASNILDSILFADDTNLFYSHSDITALFKTVNIELLKLTEWLNMNKLSINLTKTKYTIFHRLHKKEKIPLELPKLIIGDYIVKRECSMKFLGVILDENINWKDHINMIENKISKNIGLLYKAKPFLDQSCLKYIYYSFIHSYLNYANIAWCSTNKTKIKKLFSKQKHAIRLLSNAHRLSHSRPLFNNLKILNVYQINIYHLLIFMYKINNNSIPNIFKPLFNKIQHKYVTKYSNNNFVQPKTIYDSTKFSITVRGPNAWNKIISNDIKTLKTLDQFKQKLKLLLLNNEQTDNYF
>CR1-4_NVi_gag#LINE/L2 420-1415 [Nasonia vitripennis]
MLRDLLEKQKSDTNTVKNKTFAEVMSYSKTSTRSKRVPSIIIKNKSAHTIDQINLFVAHYLNKDKAIQTKKVHKKKDEVIVNCLNEESTSKAFSILKKKLADECEVNKEKVENPKVKVVGINNFENLDDKKLEEDINERNFSKFSKKCIVLHTYKNNKTNLQTALIEMPAELYQSVRESNNKLFVGYQNCRVYDYCNIKPCFNCGRFGHNGLKCNNRPICFKCTGNHKTRECERQGNIMKCPNCIYSNSKYKTEYKTEHMATDSHECKILQAKIRKFIDFTDYTMQPILPRYVGMAGATTVKAAGWRNIGMSTASINTLNDNIPNKGRNKN
>CR1-4_NVi_pol#LINE/L2 1418-4309 via tfasty with CR1-11_SP_pol, 2 frameshifts and 3 stopcodons. [Nasonia vitripennis]
MDQDINIEEVGKAECEVENIRELNRKIMKIVKKKNLILCVNIRSLNANFEKLETFVESMSKKPWCIICTIICTETWIVQHPHFYQLHGYKLCYNESKINRADGVLVYIKNNIYEKTKVEVIDKLSVVSSDLKLQSGESLRVSAMYRCHDVPKTEFLNSVKKFLSKHIRTKNHCIIGDFNIDIIESNVQNNNIGAISISQEFLNNFFEQEFIPYYRGVTRPSLDNESGSCIDNCFAKTRDVNIESYKLCTPFNDHYPLVISIDQLKVQNEQEKIENCINYRKLKEYAKKIEWNSCLHLQDPNLALDELIKMIHSCVGKATCNKKTKNKQLPRKKWITKAILVSCKNKENLYNIWKKILQIxLxSMNIKIMKKFxNKTIKDAKYKFENNEIRRSGDNPRQLWSIINSKMGKSNKQMKSPDCIVVNNQKIVNKTNIANEMNDYFSQVGIDLSNQINNKCDDQIRLPARNSESIFIQPTNVCEIHRVISEMKKKAGGVDNINASTIKCIAMFLAKPLEHIFNISIQQSIWPNALKRADIVPIHKSGDSTCIANYRPISLISNIAKIFEKIIYNRLFNFIMKHNIISERQFGFVRGRGATDALDCLADIIYKSLDKSKPIITTFLDLAKAFDTVDHRILLDKLERYGIRGCALKLLTSYLSGRKQCVKINNFKSEYKDISIGVPQGTILGPLFFILYVNDLLIDMLKDSIMSYADDTVIISSDDSWSAAQDKMNFYLSKVAKWLMLNKLSLNVNKTVYITYGNYCDSVPEDINIKIGGNFINRVESHKYLGLHFDYNMKWNIHIDSIVKRTRYLIFVFAKIKSIMDRKTLMMIYHAFFQGLVNYGIIAWGGHITIVCNSIQGVQKKLLKIINRNHFETQNSPLTVRQLFQIEAITYHYGKLRDIYSKNTKTTRKKSISLPKINKSISKKSSYYMAVKIFNLLSNDLKELTVRKVTIKNKLKDFIRNLIV
>CR1-4_SP_pol#LINE/L2 1-891 via tfasty with CR1-1_DR_1220-4303, 2 frameshifts.  [Strongylocentrotus purpuratus]
YTQPIQQIVQKHSINYHMYADDLQLYFICKPDPENVKKIENCIADVRNWMIESRLKLNDAKTEFILLGNSSSSGKIKVSHVQVSSAPVSPVHQARNLGVIFDSAMSLETHVSNCVKLANCNLRNIRAIRQYLSPQSTQQLVHAFVTSHLDNCNSLLFRLPANQINRLQKVQNAAARLVTNTRRSSHITPILKSLHWLPVQQRVIYKILLLTYRALNDLAPEYISSLLSPHSAGRSGLRSSHNIRLKEIRTKRNWGDRAFASAAPSLWNKLPFSIQTANTLSTFKTGLKTHLMLNAYC
>CR1-5_HM_pol#LINE/L2 140-3205   [Hydra magnipapillata]
MENNLSYNINAKNIVFSDNNSDNHTETLLQSEYYSIPESTQYLCENKNKFSILHINIRSMNKNFENFKCLLGELNHDFKIICFTETWLKSNETNSNFELRNYTSVHQMRDICVGGGISIYVHNSIDFIQRKDLNVNNTDCEALCVEIINKLAKNFIINAIYRTPAGSLKTFKTYLRTFLTTKNILQKHVYVVGDINIDLLNHALNSEAKTFIDILLEYNLIPTINKATRVTKKSSTLLDNVITNNFHNSRFKTGIIKTDLTDHFPIFFITESVTLNNATHKSTVFMRQINESSICQFKNLLNNYVDWNLVLQSHDVNNAYDLFLNQFSKMYDKAFPLKVKLINSKSVXSPWMTKGLLKSSRKKQKLYDKYLKNKTYKNETNYKNYKNLFEKTKKQSKVNYYAKLLEKNKGNPQKTWSVIRDLIGKNKIEKNNLPQKLIIEGKMIYHKEVIIEKLNNFFLDVGPNLAAKIPIGQKKFDSYLATTDLIMEEPILTKSELHTAFNSLKKNKSAGIDQINVNVIKSVFDIIEPSLFHIFNLSLKSGHIPDKLKIAKITPIFKSGDETNISNYRPISVLPCFSKLIERIMYNRLYKYLSENKILYNNQYGFKKNHSTDHAIXELVKHISNGFNSDCYTIGVFIDLSKAFDTVNHEILLKKLENYGVKNQSLLWFKSYLTNRKQFILKESKDSKNNLITCGVPQGSILGPLLFLLYINDLYLSSKVLNTILFADDTNLFYSHKDITVLFKIFNEELDKINEWFISNRLSLNVEKTKFILFHKPSKAENIPLKLPNLLINNKIIKRESTTNFLGVLLDEKLSWKFHIKYIEGKISKNIAMLYRTKPFLNNESLKNLYFSFIHSYLSYCNISWGSTNHAKLKKIYSKQKHACRIVFGANRKTQCEPLLRQLGALNIYKLNIHQVMIFMFKAKLGFSPVTFQSYFNEISHKYPTKFSVNNFVVPINFLKLSSYQIQYRGPLVWKEFLPIFSKKQNFVLNCTLQSFKDDSKRHLLNMEFDILDFKYLF
>CR1-5_NVi_gag#LINE/L2 277-1509 [Nasonia vitripennis]
MLSDVAKKTIALIKMKTSEEIREQLLKELHNKTAEKHNTTIMDEENEMENLVAENTLLKQLVAELQDKNQLQKEIIEMQKQKSTESQTNIKSYAEVIRDIKPKPKRVPSIMIKANDPNQTNTMELLTKCLVTEKNVQTKYIRKKNESEIEVSCMNSKSLETLENVLTSKLKNCQVKVEQQGNPKIKIVGIDNATNMDELDIESDINTRNFKNFNSSCKVLHMYTNKRNKTSTVLMECSPDIYKSIRENNNKVFVGHQCCKAYDLINITPCYNCGRYGHSASKCRNDPACIKCSDKHNVSVCNNNKIECVNCIFNNNKFKTSLPTDRLKCSILKKKIKKYINSIDYPIAPVLPAWDETSAIKQIHTIQTNRLLYQRSVAPGKNVGKFQRATQLQGTSQQNYPANTAAEDIQ
>CR1-5_NVi_p3#LINE/L2 4380-5300 May not be anything. [Nasonia vitripennis]
MSEKTNTTTIDCQQLKIWLSEIGNQDQCERRCVISSKIQDLIQQRKEMNNNRQGTAENSVYLDIRTYICAKGKCNSYNIRKHRRISTYNYNKINNTYPNIIDSLDDITNDIINTWMLKTKNNKANIKFIKFIKGTCNDLENIKNPNIEKYKPIETVFSMIDGMAAENSNKARNREATAAPGQKITESASHRMTYGDINYLGSNKAFFYFDRGIRGKQVFTNSVSSLKLQSPYKDIVIIDEIIFTSDCKCDSSNQHKEMFPHYRVTCAVGLTCPARLNSTEKMSYIREKNATTDRFMTARQMLVRNW
>CR1-5_NVi_pol#LINE/L2 1509-4384 via tfasty with CR1-73_HM_pol, 1 frameshift. [Nasonia vitripennis]
MEAQINLIEEIQNSLNEQERIYRDVETFNKDRSSNNDLILYLNIRSLNANFEKLQILLKSLKIKPYVIVCTEVWKLTHYQYYRIKDYKLYYNHGDINKNDGVVVYVNENVKHTNDTIVIGKLKILNTIISLNNKKQLEISSLYRSHGLSCIEFNQNLKIYLDQKKNVKNHIIIGDFNINIQDYNHISVEFLNNLLENGFLPGFTNTTRPTNITTNEGTCIDNIFIKTDFLNTKSLTLMTPITDHYPLFLELKNRTLKQDNKQLEGDFYRYNYKKLNNTAKQINWTKFKNTKDPNENINEIIKEIQYCMEKSKYKKPNLHNSKKTPRKDWITKAIVKSCITKETLYNKLKQHPDNEELKENYKQFVKTLDKVIKAAKIDHEKKTIEKNSDDPRKLWACINSKIGKNKNKTETTISQLKTEDNTIITNRIEIANKMNEYYCKLGETLSNKIITPSNKKLELPKSNPKTIYIKPTNESEIIKIIDNMKLKSGGIDKISARILKTIAAIIADPLAHVINQCIEMAIWPDMLKAAEVIPIYKAGKKMIMGNYRPISLISNIAKIFEKVIHRRIIDFVSQSKILSKNQYGFMKNIGTKDALNMISKTIYENLDQSTPIAITFLDLAKAFDTVNHKILLDKLYAYGMRGKGHQLITSYLNNRKQKVKIGSHTSDFENVNTGVPQGTILGPLLFILYVNDLLMNMPENSIISYADDTAVIANGKTWSEVEVKMNKHLEDISTWLRLNKLTLNIQKTVYITFGNYCDSVPKKIEFKINHEILKRVNETKYLGLIFDSNMRWDKHIQYLINKTRYLIFIFSKISKFMDTSTLRIIYYAFFHSLINYGIVAWGGAYQNNLQLLQTVQKRILKIINKNTFQRANPLNLQQLFAYESLRYHYTNFKDQFINSTSRTRNKLIILPRYNKTVSTKNSYIKAINIYNKLPNDLKIIDMRRKTNIRKIQDWLRINE
>CR1-6_DR_pol#LINE/L2 1-2161 via tfasty with CR1-1_DR_pol, 1 frameshift and 1 stopcodon. [Danio rerio]
LTQPVSFSRVFHENSALEFSNSYTNFLSNANASLPSCSDTEQLAETFNSACDFALNEVAPLKSKRSRVSSIPQPWLNSSTRTLRQECRRAERRWKKDGLQVSYQILKDCLNSYQDSVSEAKSKYFSNLIAKSASKPKVLFKTINSVLNPTMCSVPVVNLETCIKFSDFFAQKIQDIKSHLFPTDIDHSDSVPPSNSFTNFQPVSSSQLLNTISQMKLTFCPSDVLPCRLFKEVLDTICPSLLALINSSLINGVFPDVFKHAVVQPLLKRPNLDPAVPDHYRPISKLSFISKVLEKIVLSQLTSYLDIFNILDPFQSGFRAKHSTESALLKVTNDILLSMDSGSSAILILLDLSAAFDTVDHNILLRRLECVVGVQGLALQWFSSYLKGRSFSVNIGSFTSPPKPIHCGVPQGSILGPLLFSLYMLPLSSILLKHNISYHCYADDLQLYFPIKLGKDLSLENLFLCLTDIKTWMTNNSLQLNENKTEVLILGPAATNNSIKTQLGALNDNLHNHAKNLGVIFDPLLQFDKHVNAVVKSSFFQLRLVAKVKRFLSKKDLEIVTHALISSRLDYCNSLYIGLPQSTLSRLQLVQNAAARLITGTKKRDHISPVLASLHWLPIKYRVDFKILLFTYKALHNSAPAYVSELIRPYTACRFLRSHDQFLLSVPRSRCKSKGDRAFSVAAPRLWNSLPLNIRISPSLDAFKSNLKTHFYSLAFDxCM
>CR1-6_HM_pol#LINE/L2 487-3544 via tfasty with CR1-18_HM_pol, 1 frameshift. CR1-6_HM_gag fragmentary and 85% similar to CR1-24_HM_gag  [Hydra magnipapillata]
MEENVIFKSSNENDIIGDNDTDSNYFNHKMLESQYYSVSESSQYLGQTKNTFSILNINIRSLNKNFENLKILLDEIKHDFKIICLTETWCKCGETNYEFELVNYTSIHQPREVNAGGGVSIFIHNSVNYILRNDLCVNETDYESLCVELVNNKEKNIIINTTYRPPSGNLKKFKTHLKTFLNKITNSRKHIYLVGDFNINLINYASNNNAKNFINTLLQYNFIPTINKSTRITNRSSTLLDNIITNNFHNNPLYTGIIQTDLSDHFPTFLATNNILINNISTKSTIFRRQINENSLKQFKNCLKNCVDWNLILQSNEANNAYDLFLDQFCEQYEIAFPEIKKVINTKSLQNPWMSKGLLKSSKKKEKLYEKYLKKKTYKNEITYKNYKNIFEKTKKRSKKLFYDQLLKKTNGNTKKTWNLIKDIIGKNKRKKNNLPKNLLIDGELVYDKSIIAEELNNYFLNIGPNLAAKIPTNSTPFDSYLKTYDKLMDETNLKPSELRTAFSSLKSKKSEGFDKISVDVVKSVFDIIEPSLFHVFDLSLKSGIVPDKLKIARITPIFKSGDKSNILNYRPISVLPCFSKLLERIMYNRLYNYLTENNMLYCKQFGFKKKHSTEHAVVELFNQISNAFNNDCFTLGVFVDLSKAFDTVNHDILIKKLENYGVKNKNLLWFEDYPTNRKQFLYYNQNNTIKHSITCGVPQGSILGPLLFILYINDLYLASNLLNLILFADDSNLFYSHRDIKALFKIVNEELCKVNEWFISNKLSLNVEKTKFMLFHKPNKSENIPLKLPDLIINKTYIKRESNINFLGVILDENLSWNSHINSIEKKISKNIAMMYKAKPFLNIASLKKLYFSFIHSYLSYCNIAWASTNYTKLKKLYSKQKHACRIVFGANRNVPCEPLLSELGALNVYKLNIHQVLLFMFKTKNELSPKIFQSYFNEINHKYPTKFSDNNFVVPKYNLKLTSYSIQYRGPYLWKKFPEIVNKKKTLRDISLEQFKNESKRLLLFMDLNKFDFKCFF
>CR1-6_SP_pol#LINE/L2 1778-4861 [Strongylocentrotus purpuratus]
MSLLYMMNDVINMNNTQDATINVNLMNREEGDNSDIAAFLNSTTPELQLEIDSNEIFPQHLFTGYLLEKELTSSPYSNSNQLFASHFNIRSLSKNFDQFQLLINDLKCNHGVIGVCETWLNEMSPSSLFDIHGYRLITSNRTNKRGGGVGFYVTKNLNCEVLVEFSHMSEAIENIFIEIKVPNKGNLIVGEVYRPPNSNPIEFIESLHALLSEKYFENKTCIIMGDFNLNILKCRDNHNCRDFLNLMLSKSYIPLIRKPTRISDVTSTLIDNIFVNNLSSLVTSGIIVSDVTDHFPIYALISSFMTKNSDRSHTSNIRVMSETNLNRLRERLRSVDWSPVYNHSDVNISYENFIHLLTSNLNSTIPLQKSNFSNHKKIPKSPWITKCLLKSINRKNKLFYKHRKNPNARNKAQYVRYRNVLTSSLRLAKQLYFSRQFEKYKYDIKSTWRVINEALKTKNDTDPPKYILKNNCKIDDPSAMAEVFNDFFVNIGPNLANTIPKSDLEFQNFLKAPNPQSLFFTPVLEIEIKTIITNLNTKKGSGYDGITNFLLKNIIDEIISPLIFILNLSLTTGTVPQNMKIARVVPIFKKGQKESLDNYRPISLLTSISKILERLVHTRTLNFITHSKVLCDSQFGFRKNHSTSHALLSFIDKIAHAIDNVSHTIGVFLDFSKAFDTINHDILIYKLRHYGFRGVPLDWFIDYLTNRKQFVSVSGHDSHLKLVTCGVPQGSLLGPLLFILYINDLRNSSQLLSFICFADDTNLFFTHRDPRTLVDTVNKELVSVQSWIYANKLSLNIGKTHYMLFSNTLKILPNHVNFNNTELEQVDCTKFLGLYIDSDLSWKSHITNLSKVLSRNTGILNRLKHFFPSKILLSVYSALMTLAWGNASGNLINMLFRIQKRAIRNINHVGYLFHTNNLFHENRILKLSDLFYCNVGIFMYNLSTNNLPEIFLQMFRKNRSLHDYPTRQSNAYHLPRTRTVFAQKTIMFTGPSYWNALPLELIESPSLYTFKRKLKELLFKAYLDVNV
>CR1-7_HM_gag#LINE/L2 2-409 Fragment.  [Hydra magnipapillata]
NVIIYGLEATQCSSQTEKLENDKSQVNNLLSAIECDRAKVRSIRRLKSKGTIDPLLIELEDVNNKNMVLKASIKLRKIKKYENVYINRDLTASQRFILKNKLIERNEKNALRSEQEKIKFHYGMTILLEFFTNSH
>CR1-7_HM_pol#LINE/L2 409-3466 via tfasty with CR1-41_HM_pol, 1 frameshift.  [Hydra magnipapillata]
ATTNLATSSKVSPPKKTNIDYTRIKSQFIQDPLLNINKLNTSYFDSDKAAIFLKRCELYFSNQFSVFHLNIRSITKNFDELKVLLDNLNFNFSLICLTESWILDTTFNQNSKFILPNYKAISFERKSSKTGGGICVYVLDEFTYQIRYDLSFSEPDFESFTLEIYNKSSKNIIVTTTYRPPNGCLNNFQNHLSDYFETACKKNKDHSFLFLGDYNVDYLKYGENNKVQQFYDSFNEFGMMPIINKSTRITQHSCSAIDNIFTNTLFHSTFKSGIIRSDITDHFPVFAIFKKPKDLQKKDWYFKKRIFTTRAKNMFKLELSTVNWNFVFLETCANNSYDLFLDKFFNLYDKHFPNKIIRIKTKGLLNPWFTKSLLKSSKRKQKLYIRFINSKKERDKHNYLEHKRLYERTKKIARTTYFKNKLLELKGNCKKTWDAIKEILGKQKIHNKALPSVITVDGTQISDVKSVATKFNEFFVNIGPNLASKIKHTPAHFLSYLSKSDKSLAFKKLTSKELDDSIKKLNKNKATGYDAISASVIKDCYELIKDVLLDIFNKSLKTGVFPDKMKVAIITPIFKSGDESLVTNYRPISVLPVFSKILERIMYNRIFAFLYDNNLLYYNQYGFRSNYSTEHALMQLVEVISEASSHNKFTLGIFLDLSKAFDTVNHQILLEKLKYYGISHEYHKWFTSYLTDRKQFISLNDGFQTNKLKISCGVPQGSILGPLLFLIYVNDLYKASNTMSTIMFADDTTLFYSHSNIISLFQVANNELEQISNWLIANSLSLNADKTKFSLFHSKRKFQSIPKSLPMLYINNINIERSFTNKLLGILIDENLSWRDHINHISNKISRSIGILYKTRQILDKSTLTQLYFAFINSYLSYGNIVWGSTNKSKLDCLLKQQNHAARIIHFQNRFTNAKPLLKSMRALDIYELNIFQNYxFMFQHQSKKTPKVFENIFHKTLNRYNTRSTGRFKKPFRSSKLTSFAISYRGPMLWNHFTSLSGKLKEANTSQKFKKNIIELIANHDSLHDFF
>CR1-7_NVi_gag#LINE/L2 305-1297 [Nasonia vitripennis]
MSSCKKQSKTYADIMANRQPIKSQRVPRIIVKSLKSENKDPKEFSKKVCNLLIEKKDIQTKQVKSINDSEIEIKSMNEKSAKATIELLSRKLSNNYKTTIEKIESPKMKIVGVDNYNKMNLEDLEKDLNNRNFNEYDEKCKVLHINKNNSTKTSSIIIEVPRIIYKHIKDNQNRIFIGYQSCKVWDLINIKPCYNCGRFGHNPQKCRNEPCCLKCAGEHLTMQCDNSSNSTCINCFFSNSKYKTKFEVNHMANDTEKCAILKSKINRYIDMTDYPMRPTIPKYLGKVEIHKEIHKETTTVIKSPSKLLKNSQLSTSAPILPLRTKTQRDK
>CR1-7_NVi_pol#LINE/L2 1297-4189 via tfasty with CR1-5_NVi_pol, 3 frameshifts. [Nasonia vitripennis]
MEQHIDLIEELQKEVLQEEISYPDLKTLNKNLYKNDSYILHLNIRSFLNANFNKLEIFIKSLKIKPSIIVCTETWKMFNCQIFALKGYKLYYNNGKINQNDGVVVYIQDGISETTEVIEIGKLKILNTRITLSNNSNVQLSSLYRCHDLSSLEFIANLKTYVNIKKNLKNHLIIGDFNIDIMKEDNYSQELLNNMLEKGFAPGFRHTTRPKNGSGNGTCIDNIYIKTKSIDTKSFKLMIPFTDHYPIFLKLNKPPKPKKEIVRHYYNYTKLQRIASSKNWHIIETMHDPNSATAYLINEIQDCLEKSKSLINMKISKKTPRKEWITKAIMVSCEKKEQLYxKMRKEPNNNNIKVEYKNIIFIYSXTKRLDKLIYEAKLRHDRNFFTNNSNNTKQLWKHIKNKLGTNSQKDTTINKIAIDKNCTIEEPIQIANYMNSFFCKIGKDLSDKIINPQGKKLELPPINNNTIFIKPTNNSEILQIIQNMKMKNGGIDNIPSKALKVLSPLIVNALTHIFNLCIDKSIWPDALKSAEVVPIFKSGSKMEITNYRPISLISNLAKILEKIIYNRFQSFFDKFNLLAKNQYGFRKNIGTKDALSYITNIIYSKLDKSKPIAITFLDLAKAFDTVNHAILLDKLYNYGIRGKAHKIITSYLCNRKQKVKIGTADSRYETVITGVPQGTILGPLLFIIYVNDLLVDRTESTISYADDTAIYTTDDTWTKVENKMNMYLEDISTWLLLNKLSLNISKTVYMTFGNYCDSVPKKNDIKIFIQGNELNRVEQYKYLGINFDFNLKWDKHIEYIIKKTKYLIYILYKLSKYMQTDILKIIYYAFFHSIITYGNIAWGGAYKNNLELLQRSQNRILKIINKNKFDQNNPLNLKQIFAYECVIYHYNELKNQHMTSNSITRNKLIKPPKCSKAVSDKNNHIRAIQVFNCLPKSNPNLKHLDISKNYNKKKVKKWISTHIL
>CR1-7_SP_pol#LINE/L2 1-2433 [Strongylocentrotus purpuratus]
DFNLNLLQCDENTSCQDFLDLMLSKSFAPTITKPTRITEYSATLIDNIFVSGTPIVKSGVIVTDISDHFPIYTVISNVISHSNPNTNKCSGIRYLSEPDLRRLKEALTITDWYAVYNCDDVDTSFDNFMEILMLTLNSFPTRQQNCSNYKKHPRLAWISKSLLKSINRKNTLYYKYKKNHTVKSKLKYSRYRNILTTSLRLAKKNYFTKQFNVNKGDIKNTWRVINNALKSRRVSTHISNIMINENRIQDPLVIAEEFNNYFANIGPNLAQNIPVSDLHFQYFLETKNTNSMFCTPILEHEVIDIVKNMKTKKSAGNDGITNFILKEIIGEIVSPLTHILNLSIMNGIVPKKMKIAKVIPIFKKGNAQDIGNYRPISLLTSFSKILEKLMYSRTMQFLIDFDILSDTQFGFRQKHSTTHALLMFLDKVAHAIDDMAHTVGIFLDFSKAFDTINHDILLYKLSHYGIRGKALEWFRNYLTDRKQYVSINGHDSYQRSVSCGVPQGSLLGPLLFVIYINDFRNSSEIMSFILFADDTNIFYSHRDPQYLLRTVNSELKRIQAWINANKLSLNVSKTHFMLFSNCIKSLPGNILIDNTNLNQAESTKFLGIYIDSDLSWKIHVNYLCKLISRNTGILNKLKHEFPTHILLSLYNTLILPYLNYGILAWGNGTKAQLEKLLIIQKRAIRNINHAGFLSHTSQLFFNNKVLRIGDVYVYSVGVFMYQLTINELPAVICALFVRNNTIHSYSTRQRNLFHLPLTRTLFAQKNITFTGPKLWNDLPIEFTESTSLYSFKRKLKCHLLSNYALMVEEA
>CR1-8_DR_pol#LINE/L2 295-3459 [Danio rerio]
MWLFRLLLWIILCSAVISAAPLMYSAGDLYKLRPATSQPPLLLHNHPDLTRRPRPKYIHRGSRRNVSSTTNHDRNGIIRSFWSNTRLPRFARRGVNHDVLSSLPRSDYMSNVTVRFMLLNVRSLSNKTSYIHELIEDKSIDFMCLSETWQKPNDFFILNQTVPSGYKYLCKPRCTGKGGGLALIYRDCFKICPIQIAEPTSFEVLAVLLKGPTPTVLVIVYRPPKVSALNIFFNELSAILTHVCTLSPNIMLMGDFNIHFDNTANTQYNDFKLVLDSADLVQYVHFPTHSKGHILDLVCCSGVVPNNISSTDHLISDHKSVFFNVSLSLGRVKPPRSVSFRNIKNIDHHVLEGMIDYSVNQCLSTSTSDLVNFYNNSLSQILDTVAPLRTRIVSYTNPSPWFTPELRHQKALGRRLERLWNKTGLEVHKQMYSEHLASYKAEIERAKSTFYSNLITSGHSNTRTLFSTVAKLLKPHDSVSLDPIQCVPYSNFLHAKTDXIHHELLNSVLIAPNYQYDYSHXSGSVSILSNFELPSVDFITREIMKSKTSTCSLDPLPTVLVKSCINSLSSFITSIVCSSLSTATVPSSLKMASITPILKKTGADTNDLNNFRPIANLPFVSKILERTVAAQLHSHLLTNNIYEHFQSGFRPKHSTETALTKVVNDLLLAADSGYLSILILLDITAAFDTISHSLLLERLASIGIADNALCWFSSYLSDRKQFVQIKNRRSDPVSVLHGVPQGSVLGPLLFIIYILPLGHIFRSFGIHFHFYADDTQVYISTKPTTSHPPSDLTKCLNEINTWMTNNFLKLNASKTEALLVGSKSVLSKAQSFTLFVDNSPVNFSTHVKSLGVILDGMLSFSSQISNISRSAFFHLRNIARLRPSLSQQSTEVLVHALVTSRIDYCNSLLSGIPDKQLHRLQLIQNSAARIVTCSRTSDHITPILFHLHWLPVHYRIQYKILLLTYKALHNLAPHYLSDLLQLYTPSRSLRSSSAELLSVPHFKMKSFGGRAFSCTAPKLWNSLPLHIRQMDSISNFKSQIKTFLFRIAFNDLLV
>CR1-8_HM_pol#LINE/L2 402-3494 (gag really messed up)  [Hydra magnipapillata]
VILFFIYVSKFYIKPCIKMEQNSIFQFSNENINDNDTETDCFDKLNFESKYYSVYQSAQYLKNNKNAFSILNINIRSLNKNFENLKILLDEIKHDFSIICLTETWCKCNKQSTQFDLINYTSIHQPRDSYGGGGVSIFVHNSIDFFPRNDLCVNETDCESLCIELYNKTTKNIIVNAIYRKPSGNLKKFKTHLNTFLTKVNKERKHIYVVGDINLNLLKQASNKIKHFIDKLLQHNVIPTINKPTRITKKSSTLLDNIITNNFYNNYISTGIIKTDLSDHFPTFLITNNITINNISSKFIIYRRQINKYSLQKFQHLLKYNVDWDLIMQSVEVNNAYELFLKFFCEQYEKAFPEKKIVINTKSYQAPWMSKGLLKSSKKKKKLYEKFLKKKTYKNETNYKLYKNIFEKTKQQSKKIYYSKLLKKTNGNAKSTWSVIKEIIGRKNNGISIQPKKLLVDGKIIYDKSIVAENLNSFFLNIGPNLAEKIPSSSSSFDSYLKTYDKVMDESKLDINELRYALDNLKNNTSVGFDNISINVVKSVFHIIETSLYHIFNLSLQSGTVPEKLKIARVLPIFKSGDDTDSSNYRPISVLPCFSKLLERIMYNRLNSYLTVNNMLYNKQFGFKKNHSTDHALTELVTHVTNAFNDDRFTLGVFIDLSKAFDTVNHVILLKKLEHYGIKNNNLLWFKDYLSNRQQYIQYENVKTTKSIIKCGVPQGSILGPLLFSLYINDLSLTSNILNFILFADDSNLFYSHRDIKTLFKVVNEEVNKVNEWFICNKLSLNVNKTKFILFHKPTKTGNLPLKLPDLKINNINITRQTTVNFLGVILDENLTWRKHINTLERKLSINIAMMYKAKPFLDIRSLKSLYFSFIHSYLTYGNIVWASNSYAKLKKIYTKQKHACRIVFGVKRTVPCEPLLRKLNALNVFKINIFLVIQFMYQIKHGLSPAIFYPYFREVSHKYPTKFSENNFVTQKYNLKLCSYSIQYRGPILWKNFQHIVNIKEKTLPQFKSKLRRYLVLTDFNIADLLCHF
>CR1-8_SP_pol#LINE/L2 1-2839 via tfasty with CR1-6_SP_pol, 1 frameshift. [Strongylocentrotus purpuratus]
NVRSLGKNFDQFQLLLDKIKYDCSFIGICETWIKSNSSLFFIDGYTLVTNNRKNKTGGGVGLYISNDYESKILNDLTIMSDILESIFIEIEVPGKKHIVIGEIYRPPQSNFIEFLEIVQTILSSPHIANKMCFIMGDFINANLLSCDSNSQYLDFLNLLLSHSFLPQITKPTRISNSSHTLIDNIFTNVSSNIESGIVLSDLSDHFPVFAFIPNFHSQCNSSKQVSGFRNLSHVNIERFRQSLISTDWSEIYNCQNVNDCYNRFLEIFDDLYNLYIPICIPLRSNYKKVPRLPWVTKSLLKCINRKNKLFYKYKVKETEGSKLKYNRYRNILTSLLRQAKKDYYSSQFNLYKNDAKNTWKIINNVLKSKTKTIHIESVIDDGVKIQDSRDLAESFNSFFFVQIGPKLAEKIPTSGRPFHSFLTNSNQSSLFLTPTDCSELISIVNNFKNKKSAGADGITNFLLKKVIGVIAHPLAHILNLSLLNGIVPQKMKIAKVVPIFKSGSKDDLGNYRPISLLSSFSKILEKLIYTRTFKFITKFNILSSSQYGFRRKHSTTHALLMFINKIACAIDNMSHTIGIFLDFSKAFDTVNHDILLYKLSHYGIRGKALEWFRNYLTDRMQYVNLNDHDSCLRHITCGVPQGSLLGPLLFLLYINDFQTSSPILSFILFADDSNIFFTHPNPNIIADVVNNELLSVLEWINANKLSLNVTKTNYMLFSNSITSLPGNISINDTNILFVEHTKFLGLVIDCKLNWKMHVGNLCKLLSRNTGVINRLKHFFPLDVLLNLYSTLISPYLNYGILAWGNCSKTQLHSLLVIQKRALRIIHNVGFRSHSNILFFNNNLLHVSDIFLYNLGIFMYQLTTNELPDSIASLFTKNLDIHSYPTRKRNDFHIPRLRTSFSQKTIVYTGPSFWNNLHPDLLHSSSIHQFKYKLKLHLLNAYNNNDD
>CR1-9_DR_pol#LINE/L2 335-3196 via tfasty with Maui_pol, 2 frameshifts and 1 stopcodon. [Danio rerio]
IHRSLIYPTLNQHHTVKLNSLLVTCALLNCRSISDKASYLNEIITDNKLTFFSTETWQAPAISPVKSSCSQWLQISRPSQTTWQGGGLAVIYRHDIRLKQLDFHNTNSFEYMVLKADCLTIILLYRPPKALSSFFSELSELLTLACSLSSSILLLGDFNIHVDTACSNTTQLLSVFECFNLTQHVCFPTHTRGHTLDLICTSKGDITSISASETGISDHKLIDFSLNLPLRSNCPKTTITYRNLKAIDTVSFSTSIVSSNLSDVINISSPSMILSNYHSIISEVLQQQAPIKTRYVPATHSSPWLTPELRTLKATGRQLERLYRRTGLTVHYLAFQDHLKSYKSALTLARSKFISTTINKSSNRPKSLFNTINKLTSPHLKGPxLQLMLFCCSYLDYLLDKTNAVHQCVPTDTELSHPSCLSSQSLSCFSLTTPDSVSKLILKSSSSSCHLDPAPTSLLKLCHSVISPVISHFINSSLTHASFPLPLKTAAVTPVLKKPNLDPSILSNYHPISNLPFISKLLESTVATQLQSFLVDNNLLDPFQSGFRPLHSTETALVKVVNDLLLSGDSGSLSILLLLDLSSAFDTVSHDLLISRLSDLGVSGTALSWFSSYLSDRQFFISVMDFQSPTVPLKRGVPQGSVLGPLLFSVYLIPLGLILQHHGLNYHLYADDIQLYSVCTPTASAQIENISACVNDINDWLTSNSLKLNMDKTEIIFIGTPALTSNIPTSYSCEIAGLHIKTSTSVKNLGVIFDSTLSFQSHIKSVTKSAFFHLRRISQLRPFISSKDAETVIHAFVSSRIDYCNALFIGLPASLISRLQYIQNSAARILTHTKRSAHITPILYDLHWLPVAYRIKFKILLLAFRSLNNLAPSYLCNMLVPYTPTRSLRSADSGLLAVPRYRLSSMGGRSFSVIAPKLWNSLPHSLRSANNISDFKSLLKTHLFSECFASDLPN
>CR1-9_HM_pol#LINE/L2 1-2965 Fragment, via tfasty with CR1-42_HM_pol, 1 frameshift.  [Hydra magnipapillata]
SINCEYVDVPMYNKLSQNSLNYFHINISSLPYHIDDFKILLASFDNLPDIIGITESNLYDNDLSITNVELEGYVSVHTPTKAKKGGVLMYIKSNLNFKIRSELVRLKSKELESIFIEVINLRKNLIVGCLYRHPSMCPTEFVDYYLNPLLEKISLDKKKFMLMGDFNFDLLKYDTSNEVSYFLESMFSNSLFPFIIQPTRITTHSKTIIDNIFLNFYSSEIISGNLTASISDHLVQFMLIPHTKTQTSSEPIVRRCFKNFKEAEFIQEISNVEWDDHIKDDSDVNDSIKKLIEIFDHILNKHAPYKKLTKNQVVKRNQPWVTKGILKSITIKNKLHKKYLKSKNCKIKNIYFKKFKHYRNSISNLLKFSKKKYYTNFFNHNINSIKNTWKGIKELINVKRNNSNSLTSILINNKCETNPKTMSNHFNNFFTTIASKLSYEIPNSKFNYHEYLTNPTSNSFYMQPITKEETLDYINSTIIEGRSVGPNSLPTKLFKLVSGTLCKPISIILNNSFRKGTFPDAFKLAQIIPIHKKGSTIDCTNYRPISLLSNVSKIFEKVMHNKLYNFLNQNQCLYKHQFGFRKKYSTTHALIEITESIRVALDNGNFACGVFIDLQKAFDTVDHEILLSKLNYYGVRGISLQWFKSYLSDRQQFVTINGTSSDIKNVSIGIPQGSILGPLLFIIYINDLNLSIKHSKTYHFADDTNLQLITNSLKKLNKYINQDMASLVQWLRANKISLNTKKSEIIIFKTQNTNFSKKTKKNIPKYLNFRLSGQKMYLSSNITYLGVVLDEKLSFKTHISDLTLKLSRSNGMLAKVRHYVNFETLLSIYHSIFGSHLRYACQVWGQSKTVCLSRVVSLQNRAVRIIHFCPRNFPTDILYLTSKILRFYDLIQFLNCSFVWDQQHGVLPTIFHNYFNNRTTCGHNLRSVTYNNLTLPLKQTSKHGINSITYQCILSWNSLPNTLKSGLILRFKNLFLKSLHHFYLKGYA
>CR1-9_NVi_gag#LINE/L2 6-1198 via tfasty with CR1-4_NVi_gag, 1 frameshift and 1 stopcodon. [Nasonia vitripennis]
MESSSAGSVTSQTAIFYKCHPKVEVKTVICIICEEAFHTSDFAKIDGAVKISGVLGLCPEHNQVDLTSKVNTNVLSNEAKIIIAQIKLAHNLRKSDQLSVSEADSDDDDENSVKIDSNLKCENALLKELNKELKEKNKLLRELLDKQKSEINSSKNKTYAQVISSAMPNNKPKRIPKIIVKNKDTKEFSIDKINDVVAHYLIKDKSIQAKKLIKKKSEIIVDCxMLTEESASKAYNVLKKKLDESCDVIKEKIENPKVKVVGINNFETLDNKKIEDDINERNFSKFNKKCTVLHSYNNSKTHLQSVILEIPAELYQHVRENKNRIFVGYQNCKVHDYCNIKPCFNCGRYGHNGFKCTNNHTCLKCAGNHKTTDCTGNKLNCPNCIFSNNKYKGTLRIN
>CR1-9_NVi_pol#LINE/L2 1201-3798 via tfasty with CR1-1_NVi_pol, 2 frameshifts and 3 stopcodons. [Nasonia vitripennis]
MAQEFNFEDIYNIERDAENIRSLNKSISKKKNLILCVNIRSLNANYEKLESFIESLVVKPIIIICTETWILQYPQYYQLQGYKSYYNDSKINRADGVMLYIKKNIQEITKIEVIDRLSVVSSDTFLESGEAIRISAMYRCHDISKSEFTNSVRKFLSKQVNIKNQCIFGDFNIDIRDINYDKIGLAEKTIAQEFLNNFFENEYIPFFRGITRPSQNSENGTCIDNCFAKVRNIELESFKLNIPFNDHYPLFISINKFKIQKDYNQSACINYGKLINIAKRVEWDSLLQINDPNQAINELISMIQSCVEKATDRKYSNKNKKDSVPKKKWITKAILISCKTKEMLYNIWKKNPTNMKLKMDYKNYEKILSKVIKDAKYKYENNAIRKCSGNSRQLWSIINDKLGKKRNKEDHLICIIVNDQKIEDKTTIANTMNEYYCNVGIHLSNQIKKMDLEQLKLPVRNNYSIFINPTNMYEIQNIIIAMKKKAGGVDNISAITIKTLSKHILKPLEYIFNLSIQQSIWPNALKQADIVPIYKSGDNSCISNYRPISLTSNIAKIFEKIIYNRLYNFIMKHKIISDKQFGFIRKRGTKDALNCLTNIIYRNLDKSKPIITAFLDLAKAFDTVDHSILLDKLERYGVRGEALKLLISYLSDRKQCVKISNCKSEYKEITIGVPQGTILGPLFFILYVNDLLIDMQNETILSYADDTVIISCDNSWTAAQERLNEYLRKVAIWLNLNKLSLNVNKTVYIAYGNYCDSVPSTLNIKIGDNVINRVDSYRYLGLIIDYNMKWDKHINYIIKSTRYLIFIFAKLKKFMDSKTLMLLYYAFFQSITNYGIIAWGGVITIIxIxFKVYRRKYFELxIKTVI
>CR1-9_SP_pol#LINE/L2 2-2032 [Strongylocentrotus purpuratus]
FNESFNTNLPLQRPAQPNYKKMPRPPWISKTLLRSIHRKNRLFYRYKTEPDEKNKRKYTHYRNKLTVILRVAKKQYYSRQFNIFKSDIKSTWKVINTVLNNKNKNQSDFKDIYVDGEHLQNNTSVANAFNSFFVNIGPNLARNIPDSNLPFHSFLRGNIPNSLFFLPTHETEVIDIVNNFKLKNSSGYDGITNVLLKKIIHVIVSPLTHIFNLSLTTGTVPNKMKIAKVIPIFKKGDQQDVGNYRPISLLTIFSKILEKIVYSRLIAFLNCNHVLSGSQFGFRKKHSTAHALLLFINKIANAIDNVLHTAGIFLDFSKAFDTINHDILLHKLSHYGVRGRALEWFRSYLSGRKQFVYIDGSESTLQPITCGVPQGSLLGPLLFILYINDLKNSSEILSFILFADDSNLFCSHKNPETLLNTVNTELNCVFKWIQANKLSLNINKTYFMLFSNSVSSLPGHIKINNVTINQVESTKFLGVYIDSKLTWKVHINCLCKLLSRNSGVMNKLKPFVPPHVMLLLYSTLILPYLNYCILAWGNSSITLMDKVNVVQKRAVRIINNVGFLAHTNMLFYNCNILKISDLHLYNIGIFMYELSKDNLPDAFVPFFFQRNNTIHSYPTRQTNHFHLPRTRTVFANKTIIFTGPKFWNSLNNELVESPSINSFKRKLRCFLLSKYV
>CR1-10_HM_gag#LINE/L2 142-744  [Hydra magnipapillata]
KKKTKTEXPIKIKTNKQLIKYEKIQKDIEESLTFYQDSXDKKVSDLEKKKSSNANIGENEKNKFRQLEDRQRRNNLRIEGVKENDNESWDDTEIKIINIFENNLNVNGVIIERAHRTGIIEKKKPRTIVIKLLNYKDKVKILKNANKLKGSGIYIDEDFSLETTIIRKKLLEESKMHRKNGKYSVVIYDKLIVKEFIKKK
>CR1-10_HM_pol#LINE/L2 751-3904 via tfasty with CR1-20_SP_pol, 1 frameshift and 2 stopcodons  [Hydra magnipapillata]
MIFLRFYIIFLNFNIALSYFLFKMADETVLTNLNFNSFESKKSILLNNYSDPDINFYNNDEVIKNINPLYYNPNSKNIANGMDDNSFSMLHINIRSIQKNFESLKQFLYKIKINFQIICLSETWCHDKNIENNSNFQLPNYKVIHQVRASNKEGGGLCIFIKNSLLYKVKPNLSSTTNDYESLCIEIINETSKNIIIHALYRPPSGSIKVFENHIKKIIKNKSSINKTVYFVGDINLNILDYDKNKNIKNFFNVIFQNSYIPLINKPTRITKESATSIDQIITNEFINKKIKTGIFKTDISDHFPIFIISQKCIYNAQNKRKKIITTRLINDNSIKHFHNLLSCVNWDTLKLNLNANKAYDIFLTEFLKLYNKAFPEITKFIKTKTLLNPWITKGILKSSKKKQRLYNKFLKKKTLKNETDYKNYKRLFESILKRSKKHYYSEQLIKHKNDSQKTWQIIKEVIGKKNLYRNLLPKNLKFNNKYIVNKSLVAETLNQFFVNIGPTLASKIATTQLNFKSYLTSNNINVMANYKLTEKELLDAVSLLKPNESLGFDDISSNVIIKSIKYITIPLLHIFNLSLKQGVFPEKLKIAKVIPIFKSGDPSNVANYRPISILPCFSKILERIMYNRLYSFLNINNILYNKQFGFKSGHSTDHAIIHLVHDIFKAFDEKKFTLGVFIDLSKAFDTVDHKILLxKLKNYGIKNTNLAWFKSYLTNRKQYISYDGGKTEYMTITCGVPQGSILGPLLFLIYINDLNKFSNILNSILFADDTNLFYSNKDINILFKTVNKDLxKLTEWFKSNKLSLNINKTKYTLFHRLHKKENIPLKLPNLFIDNSLIKREQSIKFLGVILDENITWREHISIIENKISKNIGILYKAKQFLNQTCLKNLYFSFIHCYLNYANIAWCSTNATKIKKLFSKQKHAIRIITNVDRFSHTKTLFNKLNILNVYQLNLYHILIFMFKLDNKISPILFNSFFKKINHIYPTRFSKNNYIQSKTHYSATKFSIANRGPKLWNTILNNELKTNSSLNQFKTKLKQKLLINENELNFF
>CR1-10_SP_pol#LINE/L2 1-2640 [Strongylocentrotus purpuratus]
NFDIIPQFNYMTDALESVFIEIKLPQKKNIIAGVVYRPPNSNYEEFVTSLNTILSSKKLQNKNCFILGDFNINLLNADHNPQCQNFLDTMLTQSFLPLINKPTRVTDSSASLIDNIYSNISMNSCSGIIIADISDHFPVFSFLPILDTTNSSHNQSTHFRKHSEDNMNRLKHSLSLMDWLDVLNKSDVNEAFELFLRIFTHCYDRDIPLQSRSARASYKKIPHAPWITMLLLRCINRKNRLFYKYKATPTDHNKQKYINYRNTLTTTLRLAKKEYFFNQFEVHKKDMTNTWKLINTALNKNNIKSPVQEINTGVSVTQDPLEIAENLNNYFTNIGPNLASKIPNSRRPFHSFLKDPNPQSIFLVPVQETEVLDIINNLKNKKSAGYDGISNSLLRHVSEHIAKPLTYIFNLSLVCGTFPSKMKIAKVVPVFKKGDKREQGNYRPISLLTPFSKIMEKIVYTRVLKFFDDCDLFSNSQFGFRKKHTTTHAMLLFIDKVAKAIDNFSHTVGIFLDLSKAFDTVNHEILLYKLSHYGVRGRALEWFRNYLSNRTQFVSIDNSVSTSKALQCGVPQGSLLGPLLFLIYINDFKNSSDILSFILFADDSNIFYSHRDPHTLLDTINKELHHVNDWIQANKLSLNVGKTNFMLFSNTVTQLPGDILFNNTKLVCVDCTKFLGLSIDNKLTWKKHIDNMCKILSRNIGVINKLKFCLPSRILLTLYSTLILPYLNYGILAWGNARKIHTNRIFLLQKRVVRIINNETFFSHTEHLFVENKILNVHDLFSFHLGTFMFQLTSKQVPSALTKLFTTNAHIHTYPTRRRNQYHLPLTRTVFSQKTIVYTGPMYWNTLDASLQQHSSIFCFKKYLKLTLLKSHSAPAMQP
>CR1-11_HM_gag#LINE/L2 141-704 Via tfasty with CR1-14_NV_gag and L1-1_ME_gag1 frameshift and 2 stopcodons  [Hydra magnipapillata]
KELLEIHENTILKIFXDKFDKMENKMxVLKXENKILKNEIADIKSAMTFINEKYEKETKELYDFKEHLKHNMKVNEKALNNDEFKDELAELEDRSRRNNLRFNGIEEKENETWEESEKKIKEXLKXKLGITNEIxIERAHRTGKKNEVEMKKRRTIIVKFLNYKDKETVLXKYRLLKLWNEKLYINEDFSERTMEIRKNXFKEAKDLRAKGKYAKVVYNKLVTRD
>CR1-11_SP_pol#LINE/L2 428-3388 [Strongylocentrotus purpuratus]
MNSHAHTPDILVDDINESKYYTPQEFKNSFSYKPDNISLLHINSRSLNKNFEYVENLLHSLNNFAFSVIGISETWLHQNSPDMFNLPNYKLIRADRKGRRGGGVAFYITQNLNFKIRSDIKLTQAESLFIEINNSNVKNVIIGLIYRPPDSNCELFCDELDFYLHKIGDENKHNFILGDFNINFSPSSDNSNSTNCMQLMHSYGFFSIINKPTRINPHSSTQIDNIFSNVHNNKTIGGILCSEVSDHLPIFLTCECKLSCSKSFDELYRKESKRNIELLKQDLFFEGWAEVYNVNDVNTAYKHFSNKLQYYYEKNIPLGKMSNKRNKPRNPWITKGLLKSIQTRNRLYKLHLRNPTDTNLNTYKIYRNKLTKLIRTSRRLHFSNKIKKASSNTTATWKIIKEVMGKKTNPPPTDNITLNGTKIHDPSLHANSFNSFFTNIGPELASKINRTHAHFKDYLSNQNQESLFLNPTNPSEIINITQSLNNSKSHGFDRISMSLLKEIMYPLAKPLTHIFNHSLSQGVFPDLLKIAKVNPILKKDDPHEISNYRPISLLPSISKVLEKIVHNRLHKFITKHKILNSNQYGFRKNYSTDLALIQIYDKITSAIANKEHVIGIFCDLSKAFDTLNHAILLSKLSHYGIRGQPLLWFKDYLTNRRQYVTFNSYDSDPLLIQCGVPQGSILGPLLFLLYVNDIINTSPLLSFILFADDTNIFYSHKDLNSLNNTLNYEINKVSDWFKSNKLSLNTKKTHFMYFKHHSHNTETPIYIKIDGMLLEKKTNSKFLGVLIDETLTWNDHLHQVTMCISKSIGIISKLKFLLPHATLFLLYNSLVLPYITYCNSVWANCGSTKINSIFKLQKKAIRICTGSHFLAHTDPLFYKLKTLKIFDLNTTQVAVIMFKYINNLLPPSFDNMFRFNNSVHSYSTRISGNFHLTNPKLSITHKSVRHSGPDIWNDFPDNIKSCSTIYSLKATLKRQIIQSYAPHSLN
>CR1-12_SP_gag#LINE/L2 279-1184 [Strongylocentrotus purpuratus]
MPQTRNSKNKMPGHFLPSSKPQGHIPTAKRPFTAHVGVDQAVKEKRGMAAVEETSSNLGGSNEASAGIQLKFDGLLEELRGVGSEPGDDIAQLVVTAVSTAVKAALPTIIQAVREACLSRFKEAVNPHLLRLQFKQDEIMQEQRRDNLRLTGLKENEEESEDALAERVCEVAREVGVDIQPTDISSCHRLGKKREGGRSRQAIVRFISRRKRDRLYDGRFRLKGKDGMRGVFINEDLTPLRFSLLMRSKETPAVKSVSTKYGSIVCKLQDDAYKIIRSPDDLFELGVDNVQYGDFKLHFLA
>CR1-12_SP_pol#LINE/L2 1234-4200 [Strongylocentrotus purpuratus]
MFDINEDINLFDIDSFELTPFEFDNRLCSKFPKAFTISHINIRSLNKNIDALRLLYEECIKSKFHLIGLSEVWNVSCADILGIDGYTLEVNCRDPGLRGGGVGVYVHSSLKYKMLKYDIDFAESLWLEVQIGDRSVVVGVIYRKPNTDIFQFQGSLLSMLERIKVDKKLCILMGDFNIDLYNPCSVNAEMLVTSLVCLGIHQLIKTLTRVTPMSGSLIDHIYTNMGADRICAGTIVTDVSDHFPIFAIFEDSSVKLQPQGEVRYRSYKNYEKERFCDSLLLESWENVYECTDVNKAYDIFVQSFIGICDQYAPIVHRHSSRRKNDKPWLTRAIKKSIKKKHKLYGKVLKSNYSEDNLKKYRTYRNVLTTVLRNAKRKYYSDIFEMYKGDTAQTWKSINKLLKSGNSKVKTSHVDKLCVDDNGSKKVVTSGKEISEGFNDFFVNVGPYLAKSINGNVDDVITFKDYLSDGIINSMFWEPVTHYEVQDYLLTLNVKKACGFDDIPARLLKDAAEVIAKPLSYIYNQSLLNGVFPEAMKVAKVTPIFKKGDRNVPGNYRPISVLPLLAKIFEKLVNKRLLDYFERNDVLYKHQYGFRKHYSTKLSLINLVNDVLKSLDKGSVTLGVFLDFQKAFDTIDHAILAGKLEHYGIRGLPLQWFKDYLCSRFQFVNYDGHSSLKQIITCGVPQGSVLGPTLFLLYINDLPNSTNYFNFRLFADDSNLFHTFPPRQNLIDMDIVNMHLDKVTIWCKVNKLTVNLLKTNYLLIRGSRQSVVTQGVLKIAETEIAQVDVASFVGIYIDQHLTWKPHIQRVNKCIRKRVGVLYRLRQFVPRRVLLLLYKTLIQPHMTYGIEVWGSNYEMNMKCLLLSQKMALRVITFSPIRTHSQPIFQELKLLNVYQLHKLSICVFMYQLLNDKLPQSLIQYCCFIEHNYETRQRESKKLSVPKVRTTQGKFSMSFRGTRYWNDLPLSVREKASVSCFRRTLISQMLIE
>CR1-13_HM_gag#LINE/L2 25-780 CR1-51_HM_gag 92% similar.  [Hydra magnipapillata]
MEISIKNIEKLITNKLEEQKKSILKETEKLLKEQEKSFASIMSANLKILSERIEKLEVYVNNNKCNVTNIQKDVSDIKTTLNFQETNLMEKVVQIKQCHDKDLNILHKKTIDLENRSRRNNLRIDGVEEKPNETWSDCENTVKNIFKKQLKIDGEVIVERAHRVGKSRDSKLPRTIVLKLLNYKDKNKILNAVKNLRGTGVYINEDFAKETIEIRKKLWEEVKRLRSEGKYAIIKYDRIFYREFRSPNIKF
>CR1-13_HM_pol#LINE/L2 803-3898 CR1-51_HM_pol 90% similar.  [Hydra magnipapillata]
MPLKKKKKKKSMAGTSDFESIKFNFSEINNMKIKPDINNLHDTLMDCSYHYPSELEGFLFKNVCDKSFRILHVNIRSLNNNFEKLLSLLEETKXCFNIICLTETWISNDLNNSSNFYIPHFKLISLHRQVNKRGGGVLIYINENIVYYVRNDLSVSDGDKEILTIEIINNKSKNILLSCCYRPPDGVSENLSIFFEQSIFKKGIKEKKKNFIIGDLNMNCFLYSKDNKVKNFYDSFFETGAIPLINRPTRVTKNSASLIDNIITTDISDNDIQTGILKSDISDHFPLFLSLKSNSEKITKSNKIKIRTFNETNIKQFKSQLSLLHWKHINFNDNADKIYDIFETFYSVYDANFPIIVKTLNPKNINNPWVTRGFKKSSKIKQKLYIKYLKTKSSANEKIYKEYKYLFEKVRKNLKKNYYSRLIDKFKNNSKRTWQIMNEISGRQKKCSGSLPQTIVVDNKHICESRAIAHEFNKFFVDIGPKLAKKIPYTNATFKDFLVQMDNCTSSNELSSELXFHEFEKAFKTLKKNKSTGADDINGNIVIECFEYLKDILFKVYGASIRQGVFPEQLKIAKVTPILKEGDQTIISNYRPISVLSTFSKILERIMYNRLYNYLHSNNFLYNYQFGFKKNNSTEHAXIQFVREISNSFENCKYTLGVFVDLSKAFDTVDHEILLQKLKYYRINRKVIKWFKSYLSNRKQFVFGNNDHPNKFLNISCGVPQGSILGPLLFLIYINDLNKASNLMSIMFADDANLFFSNNDICKLFYTMNNELKSISKWFKCNKLTLNIKKTNWVLFHPVSKKAYLPQXLPKIFIDDVEIKRHXVTKFLGVFLDENITWKXHIDYIGAKISKNIGILYKTRTYLCKKSLTQLYYSLIHSYLNYANIAWGSTEKSKLKCLYRRQKHAIRLINFADRYTHSKPFFIEMKVLNIYELNVFNVSCFMYMWKNDISLPIFKDLFCSKPINKYTLRNNNFIHEPFCRTNFNQFCIAYRAPYLWNKIVLPNFNMHFTFPIFKYKLKNLILFMDDVVRFF
>CR1-13_SP_pol#LINE/L2 600-3736 via tfasty with CR1-18_SP_pol, 3 frameshifts and 1 stopcodon. [Strongylocentrotus purpuratus]
MPIEPQDIHQLLSPTTEEDEEYGPNSFCYTSEEFNSCLNTFNSHSKVYFTSSYLHINCRSLNKNYSCNMFALMKNMDQIVFVIRLNTFNSHSKVYFTSSYLHINCRFSNKNYSAICSLLDAIDVQFSAIGFTEIWIKEADPFYNFNNYIFLLNVRQGKKGGGVGLLLNDKLKYKQRKDLDVNNECFESMFIEIEKVKKNVLIGVIYRPPNQPVQSFLDILEDALNVVHKENKDIYLMGDFNINLFDVNSCQSVNDFLDLLMTHFLYPMIHCPTRITDRSCTLIDNIFTNNLEEVWCGTILSDVHVSDHLPVFLINKKQCIQNEDNNFVLRDLNEENIGKFMHEIYNSDWTLCSNDPNYSYECFLRQYVCIFNKCFPLKQCVKSKKYNNRWFTKELRKMCNKKCELYKKYLKDPIEYKKDKYNKYRNMVNGKIKKAKIAYFKAKFRNASGNIRKTWKLINESLGKSTSKHNMPDSVMCNDQAICDKKEICSVFNNFFINIGPSLTDNLDNNLDNDFSNDDIYSNIDFNSCTAFFNPITPTEIINIVSKLKNNKSCGHDDVSVKLLKKVVHIISCPLSAIFNISLSTGIVPDQLKLAKVIPVFKNGTKENVSNYRPISILPVFSKILERAVYNRLFMFLNKCNIITECQYGFRPGHSTSNAIMHFIYNVLKTFENNHILMGLFLDLSKAFDTLDHTILLKKLYYYGIRGVTLKWFESYLENRTQFVQINKDKSNIEKLRCGVPQGSILGPLLFIIYVNDMCNISDKLKFILFADDTSVFMSHSDVQVLQNVFKQEILKLSNWFLYNKLVLNYDKTKYMVFTNKNIDFNNIHLRVNDHKFERVDNLKFLGIVINHKLKWHEHINVVCNKIAKNIGILYKVHFYPLNILKMLYHTLITPYFNYCIVAWANFNKIDMLRLLKLQKKAIRIITHSQYYAHCNPLFCKLGILNVIDMHNFYIAVFMFSCFNGNLPTFLSTCFNLNCDVHNFNTRNALNYHLPKIRTTCMKNSLFFKGPLIWNSIPQEIKKCKTLNLFKIKYKQFLLNKYNNQY
>CR1-14_DR_pol#LINE/L2 1-998 Fragment via tfasty with CR1-32_DR_pol, 1 frameshift. [Danio rerio]
CLSNRSFKVTIGEHSSEAAFLSCGVPQGSILAPILFSLYMLPLGSIFRKHGLSFHCYADDTQIYLLxNRDSSGLETLMSCLSDVKAWLSLNFLDFNESKTEIIVFGLSNSSRTPPVDLGEFGFSVKPCVKNLGVIFDDGLRFDKQINAVVKSCFFQLRLLKTVKPILSRNFFKKIINAFITSRLDYCNALYFGISQTTLSRLQLVQNAAARLLTGTKKHDHITPVLRSLHWLPVHYRVTFKILLLVFKSLNGLAPSYLSDLLTEHQPGRSLQSSNQRLLYIPKSRLKCRGDRAFAVAGPTLWNALPLCIRSISSLSVFKSRLKTYLFDLAFYQ
>CR1-14_HM_pol#LINE/L2 50-3142   [Hydra magnipapillata]
MDSTYRNDFEKISNLFQTNTFNLDNESDPDINYFNEINGSKFECSYFYPDKIKSIFKNNDNRDYFNIIHINIRSLKKNFDNFLNMICQTENFFNVICLTETWCTEEDFKSNSNLHLTGFNTVFLERNVNKRGGGVLFYIKENLAYNIRSDMSVSDDNIEILTVEIINKKSKNILLSCCYRPPTGRTEYLSNYLVHNIIEKTSQEKKKNYILGDFNLDCFQYNEKKYITKFYNHLFETGTIPIINKPTRITKSSSSLIDNVLTNDYFNITLKKGIIKTDVSDHFPIFFCLGADHKTNTNGKITLKKRIYSNNNLNLFKEQLLHQDWSYINFNEDINIIYKSFFNIFYKIYEANFPIREIVLNAKDISCPWITKGIKKSSKIKQKLYIKYLKNKSDKHKNNYTVYKNLFEKLRKKAKQIYYSDLLIKHKHNSRRVWQIMKEITSKHKTNTNTMPNAIKFENKLITDSNEIAAEFNNFFSSIGHNLSNKIPYVDNNSVDEFISSPNSTINFSNLTYNEFEIAFKSLKRNKAIGPDDINGNIVIDSFNEIKDILFKVFKASITQGSFPNSLKIAKVTPIFKTGDHTNITNYRPISVLPVFSKILERIMYNRIYTYLIDNKLLYKNQFGFQRNSSTEHAILQVTRSIADSFKNSQFTLGIFIDLSKAFDTVNHHILIKKLESYGIKDKTLNWFKSYLSNRKQFVYNKESSSQIIKNITCGVPQGSILGPLLFLLYINDLYKASTLTTVNFADDTNLFQSHENIEILFNNMNNELKRISYWFRKNKLSLNTDKTKFILFHPTSKKKRIQNILPDLFIDNTIIKREKFTKFLGVIIDENLSWSQQIDSISMKVAKNIGVLYKARYILNKKQLTQLYYSFIHCHINYANIIWGSAHKTKLKSLYRHQKHAARIINFGNRFSSSTPLLIEMKALNIYELNIFNILCFMFKCKENLSPSVFINLYNLKPKNKYELRDSKNIQEPFCKTKIDQFCISYRGPFLWNKIVLPNFDFSFKWSYSSFKKKTKEIIFSTQNIFIYF
>CR1-14_NV_gag#LINE/L2 120-887 [Nematostella vectensis]
MGRHSDKKKSASKSCEAEPTESTSTVGDEDVVTMAAVRGLLKVQESMLRSLFESTVSSINARVDELVGTIAGIKASLEFSQKDINELKPLSSKLETAEDGIGQVKNSLEYFENQSRRNNIRVSGIEESEGETWYDAEVKVKEAIKTKLGFENVEIERAHRVESRKKARGGEQTKPRTIVCKLRDWKQREAVIREARKVKPEGLYIAEDLARATLMKREGQIPKMKEARKAGKLAYFVLDRLVIKERKNAESPAGE
>CR1-14_NV_pol#LINE/L2 1179-4019 [Nematostella vectensis]
ELFSSALNTRSLSGNFDEVTNLISAIKLNFSIIGISETWLKDSNHFCDIPGYNYVHEHRMDRIGGGVGLYLKQDFDFKLRPDLCFSSQSAESLFVEIMRKDEKNLIVGVIYRPPDLNAREFCDELDQLLQNISRNNKICALLGDYNFDVMKHHCHRTTAEFLDIMYSKMFFPLITRPTRITSHTATLLDNIFINDLNSYCDSGLLFSDISDHLPVFSILSDKLDCSAKNTWITYREKSASNMERFRTELQQCIWVNISLTNDPCYAYGIFLDKFTSLYNKCFPVKKTRTKKGVRKKPWLTKGLFKSIRKKNVLYKRYLCMPTPSRERHYKSFRNKLNHLLRIAKRDYYERKLNDYKSNVKYTWRILNEVIKNRKSKTNSLPSTFKVADSEISDPVKIANDFCDYFTSLGPTLSAKIPSSTKPFASFLQNEVVNSVFFESTDDQEVIKICESLRPGTAAGYDNIHMDVVKNIIDLISKPIANIINLSISSGVVPKELKIARVIPLFKSGDQALYVNYRPVSVLPIFSKFLEKIMYDRLYKFLIKYNLLFDNQYGFRKHHSTALALIHLYDKLSSAIDNKEFTMGVFIDLSKAFDTVNHEILLTKLQYYGVRGTSLKWFESYLSERMQFVNFNGHCSSRKVVKCGVPQSSVLGPLLFLIYINDLCTVSSALDLLLFADDTSIFFSHSYLAALSEIVNNELEKMADWFSANKLSINIKKSNYMIFRPRQKRQTLEVDVCIGHHYLSQVEETVFLGVVLDEHLTWIPHISNVTRKVSKAVGIMYKASFCLPKRSLMTLYYSLIYPYLQYCICVWGSTYPSNLNRLFLLQKRAVRIISNKPYDAHTEPIFKDLNILKFHCIYLFHIGKLMFQFKTKILPRYFDNIFFLNSQIHNYNTRRAKLFHIPKCRTNIRKFALRYQGPAFYNSLDTDTQSATTLASFLTSLKTVLLN
>CR1-14_SP_gag#LINE/L2 163-852 [Strongylocentrotus purpuratus]
MEKEMVRLVTNMEKRESRLSDLIEEKLARLHDLEVSVEERLHEFKAVKDSLERVTEDTTRVSRELDQLQQYSRRNNIRILGIKESPNENTDQLVCQIARSIGVDLAPTDLDRSHRVSRRPQEGPIQDPQGNRSFANTTRSSDSRPRAIIAKMMSYKSKEALIRNRRKLKGSGQVIVEDLTRKNAELLAATSKMKDKVSATWSIDGRIMAVLTSTGKKKQIRSHSDLKLI
>CR1-14_SP_pol#LINE/L2 1056-3932 [Strongylocentrotus purpuratus]
MSLRMLYQSAINSLDLNAISNVLSPMNDEENGLGISQSFFLPDELNEKLSFNKINSINFSMMHINCRSILKNMDGISSLLNNLDFQFSVLGITETWLNETSSTGLCNVKGYNFININRQNRRGGGIGIYLRDSLVYKQRDDLNINNDSFESLFVEIENVSDKNVILGVVYRPPDQSIESFFDQLSSVLAIVNNENKLIYLMGDFNINLLSTVSSQNANSFLNLFTSFFMYPLIHNPTRITDHSATLLDNIFTNDMKNKFSGVILVDISDHFPVFSISYSNRINEKKKHILKRIMNERNIIKFNERLKDVYWNLKLSDPNASYSFFLAKFLRLYDECFPMQEILIKSKCMNKPWMNRDLLKNIRKKWRLYKKYLKSPTEYRKNVYKQFRNKITNEIKKSKYQYYKNKFNNDKGNMKATWKTINEALGSKSCSKQCIDEINVDGRKITDKDEVSEIFNEYFVNIGYNLTNNVQYSKSFDHKKLKRNDKTAFFSPVTCKEIIDIVCSLKNGTSPGYDEINVGVIKKVIHIIAPQLCSIFNSCISYGVFPTQLKLAKVIPVFKAGDVSYAKNYRPISVLPLFSKIFEKCLYKRLNDFLFSCNILSDNQYGFRSGHSASMALLEFIHKACKAIDSKEYMVGLFLDLSKAFDTLDHYILLSKLEDYGIRGNVLLLFKSYLLDRSQFVVINNHKSSNKQIRCGVPQGSILGPLLFLVYINDIITSSKLLQFILFADDTSVFMSGSNLNMLLDTFTVELHKLNDWLLNNKLVINIDKTQFMLFTKRKVEDDNLIIHFNGQAINRVSFTKFLGVYIDDKLTWHEHIGVICNRVAKGVGIIYRLRHFPRYILIMLYYALIIPHINYCNITWSNGSDYFMTKLFKLQKKAVRLLYDAPFNAHTLPLFQQLKLLNVYDINNVNIAIFMFMCSKGLLPRSMSCKFTFNYEIHSYETRNAGNFHFPKIRTNV
>CR1-15_HM_pol#LINE/L2 804-4070   [Hydra magnipapillata]
MAIKYHCKFCNKAVANHQRGILCDCCSSWVHAKCNSINKFSYNLLVKDSSDWYCSDCIIKNMPFSTLSDLEFSLTISCQTLPTSTLNSLESPLQFKNFFKDINKISNTYFNCKYYDILDLNKTLKSNSELYLHLNIGSLHFHIDELRSLISSLTILPTVXGISESKLYINDPNITDITINGYNIEQCSTEAKKGGALLYLQSNLNYNVGRDLIVYAPKYLESIFIEIVNPFKKNIIVGCIYRHPSMNPKEFISDYFNPLLEKLSYENKQVMLMGDFNMDLLNYNESLIISDYLDSLCSYSFYPTIIQPTRVTXKSKTIIDNIFLNFQIPNLISGNVTISISDHMAQFVCIPSTPFKRKKSITTKRSFKNFDDNKFIQDISNIDWKFYIKNDDDVNESMNFFLKTFNKILDRHAPYKKLTKNQIKLKSKPWITNGILKSISIKNKLYKKYIKSKNSNTKSQLFNKFKLYRNKISNLLRISKKSYYISFFNKNLNNIKNTWKGIKEIINIKPSTPIKSFNLKFNGNTISDSMAVANIFNKYFETIQHPLKSKMISSKCNFSDYLKNPNSNSFFXDPVTENEVSNFIKNSLQNGKSFGPNSIPTFLLKLTSHVISKPLCTIINNSFKNGLFPDVFKIAEVIPIHKKGSLMDHRNYRPISLLSNISKIFEKAMYNRLYNFFDKXQCLYKHQYGFRNKHSTTHALIEITETIRKALDNKLFACGVFVDLQKAFDTVDHSILLSKLEYYGIRGITLQWFSSYLYNRSQFVSINDAKSFLIKCSTGVPQGSVLGPLLFLIFINDLNISLKFSTAYHFADDTDLLIINKSLKKINKHINHDLSNLXQWLRSNKLSLNTNKTELIIFKSNQSKINKHLNFRLSGQKIFPVISLKYLGIKIDSNLSFSSHLKDLAVKLCRSNGMLAKIRHYVNYETLLNIYHAIFGSHLRYACQVWGQCKSNAFLRLSNLQNKALKIIYFQHYHSNSDILYFLSKILKLCDLVQLLNCLFVWNHKQVNLPPSFSNFFTAKESSRYYLRSFSNFKLSVPNHCSVKYGDNSIKNQSVKSWNNLPFQLKSLDSFSKFKTXLFNYFIEKYSN
>CR1-15_SP_pol#LINE/L2 286-3287 via tfasty with CR1-18_SP_pol, 4 frameshifts and 2 stopcodons. [Strongylocentrotus purpuratus]
MPDRINYQHFLNNIDINAIFEKxSPIINNQESYRYPQSFYTPTYFNQMLNVHNVDKYLENYSSCLHVNCRSIKKKFSCLESFLHVIDNPFCAIGITETWLRNSDPKYNLDGFKFMGNNRVERRGGGVGIYVRDDLVYKQRVDLETNVNCMESIFIEIQNSNKYIIIGVVYRPPGESENDFFQSINSFLNIVNKENKYVYLIGDYNIYLLTVNSCSKTNEFLDVYMTKSMYPVIHYPTRITDHSISLIDNSFTNNIDDVLSGIILADISDHFPVFCISNSQITLKKSQTTMKRDINEISIRKCINLLNDVNWRVDNEDPNVSYNNLLYQFMQLYNKCFPLRSIKFKKKRRDKSWFTNKLRKMCNKKYKLYKKSLQNPTDYRKSVYKMYRNKLNREIKHVKYEYFKNKFQNVQCDMKETWKLINKAIGNSFKTRDTNIEHIQVNNERITDDLCIAQEFNNYFVNIGASLRNNVQNTLIGNNNHMQYLESNNVTAFFKPITTKEIIDIVCDLKSKSSTGYDEIDIVIVKRVVHIICYPLCRIFNESMNQGIFPEKLKIAKVIPVYKNGSFDTMSNYRPISVLPVFSKILEKCFYNRLIYLLNQCNLLSDSQYGFRAGHSTSSALIDFVFKVSNALDNKQIMLGIFLDLSKAFDTLDHTIFLDKLFNYGIRGVLLKWFESYLTNRKQYVLFNNIESDFKTIGCGVPQGSILGPLLFLVYMNDITQASQILQCILYADDSSLFLSDNDLDRLVIRFNDELQNISQWLYINKLILNVKKTNYIIFTNKNIRTDDIEVKINGNVVQRCNSLTFLGIQIDYKMSWHVHIEAICNKLSKVVGILHKLKHFPYKILLMIYNALFLSQLNYCNIVWANSNDYCMNRLYKLQKKAIRIISGSHYLAHTKPIFVRFKCFNVFELNDYNIVIFMFLCHKGIIPPSLSNKFILNSEIHSYITRQSSHFHIPLIKTSVSKNSIFFKGPILWNELPPNVKASPTLNTFKKRYKQLRFCE
>CR1-16_DR_gag#LINE/L2 16-808 via tfasty with CR1-1_DR_gag, 1 frameshift. [Danio rerio]
MAAAAAWRNDRADFSSIDQKDFEVRSIEEELSVLEIQIKGLLEKHTELCERKTLLETSRAADIRPTQQQWTPFTSTPGIPTQESTSAEDSQACFTPAPTYNGPWLYQRRKSRSKARTSAALSPLTQKFHLSAALTQKLDFPTSNRFEPLTSQTDMLLPPASSGKTLIIGDSIIRHLNIKSNSTEVQNKCFPGARVLDIAVQIPTILNHAKENDTVILHVGANNIRLRQSEILKKDFNELVETVRNTSPAIRILISGPLPTYRRG
>CR1-16_DR_pol#LINE/L2 1007-4018 [Danio rerio]
QIYTIPVIYCNTNSLGLKQGCNQVNDIKVVVTYRDNSNRPTRNINRRKSYLVPIARNYLNDNIPFLQNEGQLKMALFNVRSIASKTFLIHDILSEKKLNFMFLTETWLDQNGSISLIEACPPHYTFLQKVRCGKKGGGIAAIFMQSLSCKEVVLDEFLSFECLAIEIIESKCLVVIIYRPPKQNQGFISEFSEFLTLCVTRYDKILIVGDFNFHVDNKLDRKAAEFLDILYSFSLTQHVNGPTHNKKHTLDLIISLGINVNINEMIDLAISDHFCLFFNCQINTILQPKEKIVRKRFINTLTSETFINEIQQAPIYFRPEMNVHDKVDILNALLKSTLDTVAPEKIKKRRLGLKKMPWKNDHICQLKRKCRKSERLWRKTKLTIHHEILRSNIHEYNKTIRLERQSFYSKIINENSSNPRKLFSTIDCLLNKKTANYFDQPSVIMCEDFAIFFNSKITQIRTDIIQIDQNFVDELGSYPQNKMERFRNISKENIIQIISQLKSSSSCLDPIPTEFFKKVSNCLIDYVLDIVNDSLMTGIFPNAFKKAVVKPLLKKTNLDSTVLNNYRPISNVTFFSKILEKVVLLQLNQFLDEHKIWEKYQSGFRKGHSTETALLKVVNDMRLNIDKGNASVLILLDLSAAFDTVDHCILINRLEKLVGLSGIVLNWFNTYVTERTFLVNIDEYTSQEHNILYGVPQGSILGPSLFLLYILPLGSIIQKYGMNYHLYADDIQLYISVEPRDTTALENLSNCMSNIVQWMTANFLKLNKDKTEILIVGKKPERERIEAELCSLGLQSKKELKNLGVIFDCDLNFKSHINQVTKTCFYHLRNVAKIRSFLSFDDAKKLIHAFIFSRLDYCNAIYTGLPKGSTMKLQLIQNAAARVLMKLKKREHITPVLIELHWLPVHQRIDFKILLLVFKALHNMTPSYISDCLTKYNPNRLLRSSSAGLLEFYPVNLXRSGGTSFSHYAPKIWNCLPLEVKESPSIHVFKKRVKTHLFKIAYD
>CR1-16_HM_gag#LINE/L2 1-507   [Hydra magnipapillata]
ESLNFQETTIMEKINKITKRYEKEINNLNKKTLDLENRSRRNNLRLDGIFEKPNENWNECENAVKEMFKKQLKISNEIIIERAHRIGQPKEDKKPRTIVLKLLNFQDKTKILNATKNLRGTGIYVNEDFAKETMESRRMLWEEVKKLRLEGKYAVIKYDKIVSREFRK
>CR1-16_HM_pol#LINE/L2 561-3644 CR1-54_HM_pol broken and 87% similar.  [Hydra magnipapillata]
MALISDFETLVFNFFETKFFSLHENSDPDINYFHDTKIECSYYYPNELKGILFKNVNNDQIRILHVNIRSINCNFEKFQNLLEETKYFFNIICLTETWATSNDIKKNFNFYLSHFEMISLERQINKRGGGVLIYIHKDIKHCCRNDLSVSDGDGEILTIEIINERTKNILVSCCYRPPDGVSENLSMFLQQNVIAKGNNEKKKNFLVGDFNMNCFVYNDDNKVKNFYDTIFESGAIPLINRPTRITKNSATLLDNIITTDLFNNDIKLGILKTDISDHFPIFLTINTDQLPKQKLNKIVKKRFYTSSNIEAFKNQLSLLHWKHLNFNENANNLYEKFYETFISVYESNFPIVTITLKTKHFDNPWITKGFKKSSKTKQRLYIKYLKTKTPDSEKIYKDYKNLFEKIRKKLKKNYYSKLINKAKNDSKRTWQILKEITGKQKTCSSSLPQMLKVDNNSLHEPQIIAHEFNKYFTEIGSILSSKIQKTQTSFYDFLLPFDKNISSEELSAELSFDEFEKAFKSLKKNKAPGADEINGNIVIDCYEQLKNILFKIFRASIHQGIFPERLKLARVTPLHKEGDRSNINNYRPISVLSIFSKILERIIFNRVYNYFNYNNLLYNNQYGFRKGSSTEHAIIQFIHNISKSFEKSQYTLGVFIDLSKAFDTVDHHILIQKIKYYGLNNKILKWFESYLTNRKQLVYSNDGYQSEPLSITCGVPQGSILGPLLFLIYVNDLNKASKLKSIMFADDTNLFLSHTDIYELFSTTNKELKHISNWFKANKLTLNINKTKWIIFHSCAKKRFLTNNMPQIYIDETIIKRDTVIKFLGVYLDENITWRKHIDHISTKVSKNIGILYKARNYLNKKNLTQLYYSFIHNYINYAIIAWGSTEKSKLQHLYRRQKHAIRVVNYADRFSRSKYFFDYMNVLDVYKLNIFNVLCFTFMWKNDLSLFVFNDLFSLKPINKYTLRSNSFLNEPFCKTKFNQFCIAYRAPHLWNKIVLPNFDPSTTLPVFKTKLKNFILCMDNILKFY
>CR1-16_NV_pol#LINE/L2 1078-4482 [Nematostella vectensis]
MRSSLALVLYVSLMLVLASSKAPVSSEVRWIGHCSTRPIFCSRVRIRRQKCPCMYYNNTSATFHLPLEGDLVFKLNPGPENSPIPTVVSSHSKVRSSTWTRTRNARNLIDTQQSQLEMNNPQHLHRTYNFSMMNNVRQPIPVLVNNYPANDKLVESQSKRKSVRSSNLIPIPIVNTNKDNINKKIRLRLSHLNVRSANNKAPIIKDFTVDNAIDILAITETWFKNGDYNSVEMGTLCPTGYRFLHSPRLNARGGGVALLFKDRLEINSRICEQFNTFEFMDVRLRDSVQLRIFVVYRPPESTYTLFFDEFSRLLEQVLAESNGQLLFIGDFNLHMDDANDRYAKKFSNILDAFDLKQHVKGITHKDGHTLDLVITRSDDDIIKGISVRNPMISDHHAIHCELDLCKPQFAKKVVNFRKLRSVDIDQLSEDLLNSELFQNQQVNINNLVIKYDNTLKALLDKHAPLKAKLVTIRPKAAWYTPEVSEEKRKRRRLERKWVSTGLSTDRANYAYQCGVVNNLIDSLKTSYYTSIIQEHSLDQKVLFKTINKLLEKKSVQYYPVASSSEVLANNFADFFNEKISKIHLDLMEQQTMVGPNPYCDHTCTVEMSEFDVISEDDVKILAHKPISKSCNLDPLPASLLKGCFSTLLPIITRIVNASLSSGVMPDPMKVAELHPSLKKHNANHLLYPNFRPVSNLPMVSKVIEKAVAEQLTKHIVSNNLDVSLQSSYKKFHSTETALIKVQNDILCAIDGGNSVLMLLLDLSAAFDTVDHSILLSRLSLSYGLTGNVLAWFRSYLTSRKLYVRVEDCKSSLRSLERGVPQSSVLGPLLYLAYTSPIAQIIARHGILYHLYADDSQLYVSFRGNSQDELLMAKTKVECCVHEINAWMVHNGLKLNHDKSELILFSSKFCPAPSLEHVKVVDEIIKPASAAWNLGVILDKYLSFEDHLKTVCKSARFHLRNIGKIRKYLDKNSTEILIHAFISSKLDYCNSLLYGLPDYQIHKLQLIQNTAARIISLTKKTEHVTPILQDLHWLPVKYRIIFKVLLTVFKSLNEMAPPYIKDLCKYKTHSRSLRSASQQYLQVKRGNLKTYGDRAFSIAAPKLWNELPFHLRTIQNLNTFKQCLKTHLFKEAFNL
>CR1-16_SP_gag#LINE/L2 230-994 [Strongylocentrotus purpuratus]
MPSDSSRDTEKSVANDAIQRYIKGEEFLNSIRQTVREALHKEINVLLNRIDINEGKIMDLECRFNEREKEIVDLKKLIEDQQSSLTRVQRTANIQEQYSRRNCLRFYGVAHKEGKDTDDLICELARERLKVTLKKEDIERSHRLPTKTTESVNPPARSTRSNKRNDGTKPDVIIAKFVSYRMRSLVLSKRRELKGTRMGIDEDLTKTNANLLAKAKNCEKTLTAWSSDGRILGLFPTSGGKQIKRLITSENDLK
>CR1-16_SP_pol#LINE/L2 1212-4178 (one stopcodon) [Strongylocentrotus purpuratus]
MMTLRASYERAISNVDLSTVSHILSPMIGDNETFGIDQSFYLPDDLNSTFLKYSLNSINFSILHMNCRSILSNFDGISALLNSLNFQFSVMGVTETWLKDNSLLCNIQGFSFLHNIRAERRGGGVGVFIRENLIHKHRGDLDINNGVIESIFIEIENVCNKNIIIGVIYRPPDQSVQEFLDITGSALHKINTENKIVYLMGDFNINLLNTTSCHKANDFLNMLVTFSMYPLIHHPTRVTDRCVSLLDNIITNDVTNKLNGAILVDISDHFPVFSVCHHKIKEKKYVISKRQFNDSNIFEFSKRLRNVRWNLKSSDCNVSYSCFLSKFIRIYEECFPLQEINVNRRKHKPWINKVLMKKIKKKWKLYEKSLKNSTEYRKRVYKQYRNKVTNEIKKAKYQYFKDKFNHDKGDIRLIWKTINGELGTKSVKQCVEKIDVNGSTITNKEDISKSFNEYFVNIGFNLTNNVQYSNRFYNDNVFVNDKSAYFTPISCKEIIDIVRCLKNGTSAGYDDINITVVKKIIHLICVPLCIFPNQMKIAKVIPVFKSGDRTNVHNYRPISVLPIFSKIFEKCLYKRLRTFLTSCNILSENQHGFRTGHSTTTALLNFIDKVSNAIDSRQFTIGLFLDLSKAFDTLDHVILLRKLEAYGIRGILLQLFKDYLSNRQQFVSIQNQQSSYLPIRCGVPQGSILGPLLFFxMSHNNLRTLVDSFNSEINKLSEWLINNKLVFNVAKTQYIVFTKRRIEDNFAITFYGHQINRTSCVKFLGVHIDESLTWHEHVGVVCNRVAKAVGIIYRLRHFPRHILVMLYYALIFSHVNYCNIAWSNSHDYFITKLFVLQKKAIRIISNSPYHAHTLPIFSQLNLLNVYDINRLNIAIFMFMCSRGLLPSPITSKFVLNSNIHNYNTRNAVEYHLPKVRTNISKNTIFYKGPHLWSTIPNHLKNQPSVNSFKRSFRLFLSNLYSTT
>CR1-17_DR_pol#LINE/L2 2-3364 [Danio rerio]
MAPVFAACRLNPLQLFLRLILVLFFVAQHSEALLVYDRQTLLNIRNGMVNRLISEPSGSCTYNHPASLSLPAHLCRLPCILFRRRRRRKRGKRGGLLISLKVRLSDAGMNCRARFSSDLIPDFYRIIPYRTSDPPIQCLVSVFPTSCEASTRICSPRCRRRGVDLSNLCQLRRIPRENDHHQVPTRLTLVNVRSVLNKTFILNDFFTARDLDFLFLTETWAVDGDLSPFSELVPVNCTYFNNPRRSGRGGGLASIFKKTFNCQPVRADAFSSFELQMFQINERSGPVLCALIYRPPRSTKDFIKQFGDLLSSILPRYDNILILGDFNVHVCCPKDNLAKDFLNLIDSFNLTQHVQGPTHNQGHTLDCVLTYGLSICNVALDDMAFTDHKAVTFEITFTHKISNSPIVFRRFRRFNVSSIDLFKDLYINEQHTTMLEDPPSYMDVDQLLELFNCSFSSILDFVAPEKTRTVKPRSEPWLNETTRASRQACRKAERKWKRDKLQVSYEIFKESLSNYQRSMKEAKRKYFSELISTHQNKXDVLFSCISSVINPGSNVVMEESCDTCEAFLNFFTEKISSIRSGIASFDIVFPEPDVSPAALVSFTPVSLLSLTDTVGKIKLSSYPLDIFPSKFFKQAFEIIGPSILSIINRSLVSGVVPSQLKHAVVQPLLKKPSLDKSVLSNFRPISKLPFLSKILEKTVLTQLQSXLELNSIHEVFQSGFKAYHSTESALLRVLNDILLFRDSGHSVILMLLDLTAAFDTIDHEILISRLEXLVGIQGSALKWFRSYLSDRSFCVNVGQTFSSSRPLTCGVPQGSILGPILFSLYILPLGSIFRKYGVAFHFYADDTQIYVPFKSRDKKGLDSLMRCLVEVKSWLSSNFLNFNEEKTELVWFGDPNPLHLSGFGELSTYQKPVVRNLGFQFDSDLKFNKQVNTVVKSSFYHLRLVAKVKSFLSFNDLEKVIHAFILGRLDYCNSLYVGISQNALNRLQLVQNAAARLLTGTRKFEHISPVLSSLGWLPVRSRIDFKLLIFVFKSLNNLAPSYLSDLLHVYNPGRSLRSSDEFILSVPRSRCKRSGDRAFAVVAPKLWNGLPPHIRHAPTLPVFKKRLKHHLCSLVFEPF
>CR1-17_HM_gag#LINE/L2 63-807 via tfasty with L1-3_NV_gag, 1 frameshift.  [Hydra magnipapillata]
MLKMEITMKSIEKMISSKLEEHKKSILKETERLLKEQEKTFTSIMSANLKIITDRLDVIEKDNNNNKRKISNFEKDINDIKDSLNFQEDKISEKLSHIKKYYDNEVNILNKKTVDLENRSRRNNLRIDGLHETPGENWDDCEKAVKDMIKKQLKITSEVVIERAHRIGQHKHNKPRTIVLKLLNFQDKNKILNAVKHLKGTGLYVNEDFAPETTELRRKLWEEVKKLRSEGKYAILKYDKIFSRDFKK
>CR1-17_HM_pol#LINE/L2 879-3967 via tfasty with CR1-11_SP_pol, 1 frameshift.  [Hydra magnipapillata]
MTYKTIDFESLRFNVFETANNILNDFCDVDTQIFQVNNFDSPYFNIKNFKTELQTFKNNFMAIHINIRSINKNFDKLKHFLTDCNYSFSMICLTETWCSDESIQKNSNFQIPYYKLLSSERKADKRGGGIATYIRNDQAIKARKDLSISDSSCEVLTIEITNSKTKNILVSTCYRPPEGDIKKFSSYLEDIFLKINREQKKLFCIGDLNIDCLKYKKFPNATTKLFFDNMFQHCIFPIINKPTRITPNSISAIDNILTNAFQDSSLKTGIVKTDISDHFPIYFSINQDTRINNNSKTKIYIRKTNKISIQKFKDTLSIVNWDEVYKKCNLEDTNSAYNTFIDIFFNHYNSYFPIEEKIVKEKYLNCPWITSGIKKSSKTKQKLYIKYLKNRNEVNLSIYKQYKNLFEKIRKNSKKIYYSKLLQNTNGDIKKSWNIMKEIIGKKNTKTNTLPDRIVVDEKEYNDKSSIAEHFNSFFANIGPNMASKIQCPNTYFETYLTNQQSELKFNGLDYDELEAAKNSLKINKAPGIDEISSNVVISVFPVIRKPIFEIFKSSITTGTVPDKLKIAKVVPIFKSGEQCSLNNYRPISILSVFSKLLERIVYNKLYKYLTINNILNKKQFGFQKQHSTEHAIIDLVNKINDSFDNNKFVLGIFIDLSKAFDTVDHAILLKKMEKYGIKNVALHWFESFLINRQQCVIMDKNTHSKLLKIKCGVPQGSILAPLLFLLYINDLPKVSKKLDAIMFADDTNLFYSSTSIAELFETAGIELEKLNTWFKSNKLSLSTEKTNYILFRHQSKKKKSIPIPLPSLKIENKFIERTKATKFLGILIDENISWKAHINLLNTKIRNNICMLYKARPMLPQKNLKLLYFSFIQTYYTYGNIAWASTHRSNLVALYRHQKHAARIVFNKDKFTHAEPLLKLLNALNVYKINIYQNLIFMLKYKLGLVPLHFSEEFFKCNRNKYETRGIGNFKVPYKKTKLSRFSISYRGPYLYNKLIAKNTIITKLLNHNSLKTLLKKLVLNLNNFTNVY
>CR1-17_NV_pol#LINE/L2 3-2660 [Nematostella vectensis]
GFLIHHVPRAGARGGGVALLHKSQFKLTRLSVDVNYTSFEFTDCMITHSSTRLRMIVVYRPPPSKKNRFTVSKFLDEFSSFLENVATTIYPLIIAGDFNFHLDNSNDRSAARFQELMDTFNLSQHVQQPTHKNGHTLDLVITRPAETSVRNVMVTDPSKSDNCAVHWTSPCQVKPSTERKEISYRKLKSLDREAFMEDIMVSPLFCKDYTNTEELSNCYNNVLTKLLHKHAPIKTCTITIRPAAPWYCDNIRKEKAKRRKLEALWRKTRLEVHRQMYTEQCVHVNKLLYDSRMQFYAGIIDENSTNQRTLFSTIQKLLSLNTAKKLPSHTCKRALADTFIIFFTNKVQVIREGFPTTETDNNEQILNFEQTQSNYAIPELNEFSPTTVHELSSLVSNMISKSCSLDPLPGSILRDCQGVILPLITNIINLSFSEAVVPLSLKEAVLDPILKKDNLDHEIQNHFRPISNLPFVSKAMEKVVAIRLNQHLDCGGLHEIYQSAYKKGHSTETALTRIQNDILRAIDDGQSVILVLLDLSAAFDTVDHDLLIGRLKHRFKIKGLALSWLRSYLSDRSQFVKIGNERSESKKLVCGVPQGSVLGPLLYSMYTAPLADIIRKHGLNFHFYADDTQIYMSFNPLSDKEPALSRHLVESCIDDINRWMTANKLLLNGDKTELLVLHARHRPKPNLSFINVGSDVVEISDSAKNIGTWFDSEMSMDKQVKNICKSAFFHLSNIAKIRKYISFKHCEILLHAFVTSRLDYCNSLLSGLKQEHVRKLQSVQNSAARILTGVRKFDHITPILQELHWLPIPERINFKILLLTFKSLNGLAPSYLNELLTPYVPRRSLRSEKKALLVEPRCNLKTYGYKSFSHQWLKPIFSEVLFNMF
>CR1-17_SP_pol#LINE/L2 110-3124 [Strongylocentrotus purpuratus]
MSCRARFVQCLNEKHVSVSTLREFLSPSDPQSTNNFTQSHYTPDEFNTFVSQKLLDKDVNNKLSFININCRSLQHNFDALSVLMMSLRMQVSIIGVSETWLRDENSQYSLCNFDHYEFVGNNKRLGRGGGVGIFIRKDINFKRRTDLDINESFLESIFIEIEHFNSNILICVMYRPPSQPVDDFLMSLVNVFNVVNVEKKLFYLMGDFNIDLLNVGKVQSVNDFLNILMLHSMIPLINEPTRVTDRSSSLLDNIFTNDSCHIYSGILLTDISDHFPVYCICDTDIPKSSCETDFYKRDLNENNIRMYFLQLRYSTEWYLSSDVNSSYNTFVFKFTKLYNLCFPVKLVRIKYKRKNKPWITNEIIKLSKIKCRLYKLLIKNPNVYRKEVYRKIRIKLNNKIKIEKKNYFKKSFKDSTGNMKKTWDIINKAMGKKCKMTNIKEINKNDTVITDKNDISNNFNEYFVDVGYNLNCKFDCFDDSECIKCIDMNDKSMFFKLVTSSEIEDIVKKLKNNTSAGYDDVDVKIVKRCIYLLSNHLCTIFNQCLEQGVFPDKMKIAKVIPVFKNGVSETMSNYRPISVLTVFSKNLEKCMYNRLYAFLTKCNIINNNQYGFRAGHSTSCAIIDFIHKVASAIDNNEVMLGLFLDLSKAFDTLDHHILLVKLYQYGIRGIGLDLFKSYLLHRHQFVSIANVKSNYQEIKCGVPQGSILGPLLFILYINDLPSVSRILKSILFADDTSIFLSHQNIQSLQDIFNREIKLINTWFSVNKLSINISKTHYMIFTNKKCDTDSIIIRLCNTEIKQVSSLKFLGITIDNKLKWTDHVNAVCNVLSKNIGVMYKLKSFPKCILKMIYNSLILPFLYYGILAWGNAHETHIRKVILLQKRAIRTICHTSYLAHSHPLFKEMKILNFTDMYNYQCAIFMFQCYLQILPKSLLKLFILNCNIHHYSTRNAENFHLPLVHTTSYKRTVIFNGPCLWSTIPRKIRELKFVNTFKRKYKKYLMDVY
>CR1-18_DR_pol#LINE/L2 337-3197 via tfasty with CR1-15_SP_pol, 3 frameshifts and 5 stopcodons [Danio rerio]
YRLLHFCSLLLTNVIIINNMYLTVCxCLFLKKYVIHSFVIESIALFVVVKKYMLLSNDALKxADRIYSVILIKxCILIYISENLKCLQIETHVNMECLALNVILSPNMKFYIIVLYNPPGHDASFFNRIEGLLSLVDDRCECMMFGDFNINWMDKNSKSQLKSNMEKLNFTQLIDRPTRITRKSETLIDLIFTNRPERVTKTDNLITGLSDHNLTLIVRKLTRKRLLHHNxMENQMLITGFAKSKIAHFEYDLKEVNWGKVFKELDINQSVGHFATILSKLTSKYTKTWKSRYKKFSLPWFNSDIRSVNxKARSCSQKSLLSKTNTDHLVYTGLRNKVVSELRKAKMKYFSKLIEEAHGSSSKLWQHINRLSNSNRQKHSKIKHLKVTNNMICSDEAMANAFNSFFIESVQELSSNFNFTKSYPEEPDYVYPDSFYIKEVSCEKVQKVIENMSNSTAKDIFNFHSELIKRYKHFLLEPITYLVNLSIQTKTFPDSWKTAIVIPIYKSGDKDVACNYRPIAILPVVSKVLEKIVAEQLMEHLHSKQLLYPQQYGFREKYSTETANCYLLEKIKGSLDKGSVVGAVFLDLKKAFDTVNHSILLNKLREFKMSSEALQWFGSYLGGRQQCVRVNGVKSSVRSTTIGVPQGSVLGPLLFTMYINDLPECCPGVNCQLYADDTVIYVSAKTPCRAGEQLTQALQHISRWLELSHLTLNVKKTVSMCFSIRNRPVQDTFEVLIKNKVIKEVNEFKYLGITLDINLKFDSHVKNLSKKVKPSLNCFRFIRRFLTYHTAKLYMHTMIFSHLTYCITSWSQASLTTLKPIDSIYKQAVKIMDLKPMRWHHCDVLCKHNLFNFDSFIQFSYLKLVFKCLNNHVPILFSKLINRHQTSHRVTRATANGDCLVPKCKTSFGQSVFSVKGAKLWNELPVSLKSESNLNIFSSALKKWLKTKQQCLHK
>CR1-18_HM_gag#LINE/L2 129-959   [Hydra magnipapillata]
MDKNKSSDKKEFQLNTEASEISVKLVREIFSEMFKKQQKDILKLISGNLKITNERIDGLLKEIAEIKETCKTLQIENNLRKSEMVKTNDRVSIIEHSQKDIEHSITFTQDIQEEKINKIEKKIVTKVAFSVEEKNKLRQLEDRLRRNNLRLEGITESESESWNESEEKVLSIFENKLNVSGVVIERAHRTGKTGQSKPRSIVIKLLNYKDKVNILKNSKKLKGTGIFINEDYSLDTLNIRKTLFEEMRTHRTNGKYSVVIYDKLVVKDFKKSLKKA
>CR1-18_HM_pol#LINE/L2 1019-4075 1 stopcodon  [Hydra magnipapillata]
MAEAINNIVFDIPGRKNTLNRINDDDKNNNFFDEILVETAYYNVDDVKDVFNSASSNFSLLHLNIRSINKNFENLKLMLNNIKNKFSIICLTETWCHRDTINSNFQLSGYKSIHQPRENGIGGGVSIFVQNSLTFKHVDNLKVNDADCESFTIEIINKAIKNTFITALYRPPNGNYNQFENHINYLLPKLIKKHVYLLGDFNLNFLNNKTDNHVARFINTLLQYSVFPIINKPTRVTKTTASIIDNIITNNYTRAKMQSGIIKTDITDHFPVFLITDSATPKKKIETKTIYVRNINNESIVTFRDLLQEINWELLTDCNDVNNGYDFFIRVFTKQYEKAFPKVKKIINSKNLLSPWMTKGLIKSSKKKQKLYQKFxKKKNYKNEIKYKKYKNSFEKLKKQSKKNYYSLLLNKTFGNARKTWNVIKEITGVGNVKIDNFPKRLQRDGNIGDAFVNKEIAETFNDFFINIGKKLASAIPEGSKSFESFLKKSDSIMDESELLVDELRLAISMLKTNKSAGLDEINPDVVKAVSDIIEKPLFIIFNLSLRNGIFPDQLKLAKIIPIYKSGDDSIKSNYRPISILSCFSKILERIMHNRLYNYLETNNILYHKQFGFRKNHSTEHAVIDLANQILNGFENNSYTLGIFLDLSKAFDTVNHKILINKLCNYGVAHSNLKWLQCYLENRKQVVPFDLTCSPFESISCGVPQGSILGPLLFLIYINDIYLSSKILNYIIFADDTNVFYSDSNLKNIFCNVNTELTYLNEWFIANKLSLNIEKTKYILFAKPSKSENLPLTLPELTINNIKIKRVFSMKILGIIFDEHLNWKSQIKLVENKVSKTLGIMYKTKPLLNKICLKNLYFSFIHSHINYCNIAWANNHSSFLKTIYTKQKQASRLVSGMDRYESAEPLLKEINALNVYKLNIYHNLLFMFKLQNELIPKYFYKNFSLINHKYKTRHSINNYCIPLTLLKKSDFSITCRGPRLWNSVLDENMKKIKSIDIFKRAIKKHLLNLNNTYILSFF
>CR1-18_SP_gag#LINE/L2 360-1148 [Strongylocentrotus purpuratus]
MSINTVKAVLAELFEKEEFFQAISDGVEKKLGTILDRLIQQEACITEFVSTGKVRDAQIRDLETKLSSMETRCDKLESDLMGVQNGKDQQDQQFKSLQKELNSRNEEAHSLKRNINSLEQYSRRNCVRIFGVKEKPQENTDEIVYDVARQMGITFDPSDIDRSHRVGKVPADKARSRGIIVKFRSSKCCQQLIANRRKLKGTHISVFEDLTASNFKLLSDAQACPKVLAAWSLGGRIYVSAATTNGTTMKHLITRKEDLQKL
>CR1-18_SP_pol#LINE/L2 1370-4387 [Strongylocentrotus purpuratus]
MCVVSMSEKQSYVQSLQSIDLQTIYEYLSPENNENGYNYGPSQSFYTPDEFNDYSKTKLKNYSCVFSSLHCNCRSMNKNFENLTIFLNTLDVQFSLLGITETWLKESDCFYNIDHYSFLGNGREAKRGGGVAIYIRNDIDFKSRADLDLNTVHFESIFVEISNFTKNIIVGVIYRPPNQSVQSFIESFDEILNIVKKENKLLYLMGDFNLNLLKVTSCKRVNEFLDVCMFNNIYPLIHTPTRVTNHSASLLDNIFTNDLEEIFAGVILGDVSDHFPVFSISNLQLQIKKEHASVKRDFNKENSQLFVNEIMNVCWSVENHDANEAYNDFLQKFLNIYESCFPIKKSVKKKFKNKPWFNKPLRKLCNKKCYLYRRYVKKPTPERHEKYKNFRNKVTEEIKETKRAYFKGKFQNAAGDMKNTWKIINGVLGRGVKKKVLPSSIQCNDAMINGTAAMCNAFNKYFVNIGHTLSSSFVNSGDCMQHVIKNNSSAFFTPCTPKEVINIVSKLKNGKSPGFDGVDITLVKNVIHILCYPLCDIINLSLNTGVVPDKLKIAKVIPIYKNGSNDNLSNYRPISILPIFSKILEKCVYSRVYKFLEKCNIITPKQFGFRAGHSTSSAITEFIHKVTNAFDNKEIMIGLFLDLSKAFDSLDHSILLKKLECYGFRGIVLEWFKSYLSNRKQYVVLEKCESQTMAIRCGVPQGSILGPLLFLLYVNDICNVSKVLELILFADDTSVFMSHQDIVSLQNMFNTEFAKLVDWLYINKLVINIKKTHFMIFTKKHIDVTQIKVKVKESVIEHVTHLTFLGVTIDDKLNWKEHTGVVCNRLAKHVGVFYKLKFLPKEILMILYNTLILPHLNYCILVWACSSMQNTNRLLILQKKIIRIISHSQYLAHTLPLFYNLNFLKVNDIYVYQCAIFMYLCFKKLLPNTILQYFQLNKNIHGHQTRISNNFHIPGVRTLVSQNTIFFRGPKIWNDIPIDIRLSPSLNSFKRKFKLYLLRQYSIVQ
>CR1-19_SP_pol#LINE/L2 295-3291 [Strongylocentrotus purpuratus]
MPESTVNSIINVHSFVEFLSPRNGENDFYGPSHGSYTCNEFNDLVNDSNDGLFSILHINCRSLSKNYDNISTFLSSLTVQFTAIALTEIWIKEYNSYYDIHNYTLVLKGRQNKKGGGIGFYVRNDVKFNRRLDLDINTPYIESLFIEVVTANKSAILGVVYRPPDQPIQSFLESVENVITTVNTENRIFYMIGDYNINLFKVNCQSHVKDFIEMFMAVGMYPLVHGPTRVVNNSISLIDNIFTNNLENCSSGTILTDISDHFPIFCIYSQSTQTVTETCITMKRQFSAKNINTFITNIGNTHWILKENDANSSYDCFLKQFQHVYEICFPMKCQSKKKKRFDKPWFNDELRQLNKKKSLYYKKYLNNRTAYRLAAYKKCRNKLTNRIKYVKYKYFKQSFVDAKGDTKQTWKIINGLLGTKSKKNEIPSTLQYNNETIDYDTDICESFNEYIINIGPKLTSTLDIPTGDFKQYLNKMNLLLFFYFFFTPVTPREIINIVDKLKSNKCSGFDSVDVKMVKRVIHLICYPLCAIFNSSLETGIVPDQLKIAQIIPIFKSGTKTEMSNYRPISLLPVFSKILERAVYNRLYSFLNLHNILNNSQFGFRTGHSTSSALADFTCQVSQVFDKSEVMMGLFLDLSKGFDTLDHNIILAKLFNYGIRGVLLNWFKNYLSNRKQFVKIKVNTSSIQTVVCGVPQGSILGPLLFILSINDMCNISDKLKYILFADDTSVFMSHKNIQSLQQDFGNEINKLLHWLSLNKLILNVNKTNYMVFTKQQKIDFNEVDLQVNNHEFQRVSVNKFLGIEIDSKLTWNEHTGAVCNKISKNTGILNKLRFLPKCVLRILYNTLILPHLYYCSEVWAMTSQTNLNRILKMQKKAIRVISNSHYRAHSKPIFYKLKLLNVFDICEYHIAVFMYLCRNESLPCALLKYFNLNSTFHDYETRNASNFHLPQIKTTLMKKSISFDGPKIWNSIPINIRNCKSLQTFKRKYKMYLIESYVL
>CR1-20_HM_pol#LINE/L2 685-3830 via tfasty with CR1-11_HM_pol, 3 frameshifts and 2 stopcodons  [Hydra magnipapillata]
EKKSLKRFKHFKYKYTVNEHFYYSLNYLFDVICISETWEDANLPMSENSLYNLVSYKMISQPRVNSKGGGVAVYILDKFEFKKNNTFSKTNKHIETLCIEVLNTSGKSFLISSLYRPPCGKQVNFLNILKNFMSQMSKQNKHVFFAGDTNMDALSYEKFANIKNFFNLLFEFNIIPTIFKPTRITNQSSSVIDNILTNCSLNTKFESGLFIADFSDHFPVFHIAREVLSNIDKKNALxLTEIFLxKNLNNFKNKLQVEQWDKVYSSTDPNIAFDHFSSTFQNIFDNVCPKITTEIKNKEYKNPWMTITLIKASKRKQKLYVKFLKSKNKEDEKIYKNYKKFFQHSMKEEKIRYFSNQLDKHKFDIKRTWAVINELTGREKKKHTCTCLPQKLISDKKNYNKYKKICQEFNKYFVNVGPSLASNIVQPNKTFDNFLGEKPTTSINNEKITKLEFNKAIIELKRNKSCGYDGISSNVAIYIMDSISKPLFYLISSSFENSIFPNKLKLAKINPILKKGDCNNVSNYRPISLLPVLSKVFERIIYNRVNNYFTLNNLLYKNQFGFQSKCSTEHAIIKLADKIFKSFDSDELVLGVFVDLSKAFDTVDHSILLSKLKYYGIIGSTFKWIQSYLSNRKQFVLLEKSGALDITCGVPQGSILGPLLFLIYINDMHKASQKISTIMYADDTNLFFNHPNAKTLFETMNIELEKFNLWFIANKLSLNCQKTSFTLFHKNKKQSINLPLKLPKLLINKNEIKREKCTKFLGVLFDENLSWRNHIGLLETKMSSVIGVLYKSRPFLDSKSRNMLYFSLVHSQLLYANIVWASTHKTKLLKLQSLQNHACKVINYLNRLVNPAPVMKSMMVLDIEKLNTLQILIFMYKYKNNLLPSVFSDIFLISFSEKYNLRSNTRYNYHLGKIKSHQSNFLITNRGPSIWNHFQNKNIKDLKSISSFKRETKMHLLNS
>CR1-20_SP_pol#LINE/L2 83-3058  [Strongylocentrotus purpuratus]
MNFDLEINQDVTENESTYFTTDDFNAAFNLNNDGHNQQSLSLLHINARSMNKNFDSMDLFFSSIQHFPFSIIGITETWLNNKSPPLFNIENYKLIRADRNYGRGGGVALYIHDSLTFKERPDLSVDGSEYIFIEIINKQAKNILVGVMYRPPHSNIDTFVDRLEENLSLISRENKIIYLMGDYNINLLPPALNNIGLRLLTTLSSYSLHPHINKATRITSITETLIDNIFSNIFNENSQNGILYSDISDHLPIFVISPTIQLFKHESMKHIYVRKEMDADIQSFRADLASESWVDVFNLVVANDAYDIFLNKLMYYYNKNIPLVRIKLNKKKAKKPSTRRGILRSIATRNRLYKKALRSKDHIDLDKYKKYRNKLTSIIRLSRKLYYSNKIASTQNNNSLWNIIKDLTGKKKHINTTINVNGQDINNLNECANYFNEYFVNVGPTLASKIDAGNNHFSQYLLEPSENSLFFTPTTIHEVVSIVQSLKSSKSSGPDGLSMNLIKQIIHFIVSPLVHICNISLSTGSCPNLLKIAKVIPIHKRDDPSKLQNYRPISLLSSISKVFEKLVYKRLISFLNKHDILIPNQFGFRKNHSTDFALIKLCDKIIESLANKKHVIGVFMDLSKAFDTIDHTILLHKLEHYGIRGLALSWFEDYLKNRTQYVYYHSNSSSKLNLTCEVPQGSILGPLLFLIYVNDIIKSSNILTYILFADDTNILYSHKNIDTLVDTVNHDLCNISIWFKCNKLSLNISKTNFIRFRTINSQDQPQCNLFIDGLSLVEKQSTKFLGVIIDSNLSWNEHIHNINILISRNIGILYKMKCLINDRSLFMLYNTLILPYITYCNIIWANCSKTKINSIFLLQKRAIRICTHSNYLANSNPLFSQLKTLKVYDIHTLQTAIFMYKYTSKTLPASFLNFYLLNVNVHSYLTRHAHDYHLNNPKLSLALRSIRHHGPDIWNNLPNHIKTRTSLYSFKALIYMKAYLLTQYSLLDLIT
>CR1-21_HM_gag#LINE/L2 118-930   [Hydra magnipapillata]
MTKSEEFVSIVMMREMLNLQKETIISFFRESILSTNLKFDIFQSSIQDIRRELDDLKSGLNFVGGVCEDKVKAVGEKINKVCEDLTNVRKMQGKISSDNTELKLKSVDNEDRNRRNNLRIDGIIETNEEKDWDITKEKIKQLFNVKLGIEKDIKIERAHRVGLAKLERERTIVLKLRDFEDKKVILENAIKLKGSNIFINEDYSFTTRKIRKELFEQAKLHRQNGHYAKVVYNKLIVHEFKENIHKVVNLTHGNEAIERNAAVCLTHGNE
>CR1-21_HM_pol#LINE/L2 930-4013   [Hydra magnipapillata]
SFLKVFGLIYCYIFLIFLNYSLKMATHFENLKSFEENINIFQETQINLIDTPYIDPFDFKTTNDHCSFSVLHINIRSMQQNFEKLKEFLNIINYTFDVIALSETWHDFENSLELNSIYNLPFYKLISQPRKSGKKGGGLGLYVSKKHDFKIKNVLSFSNDNYESLFVEIINKKIRNVLIGCVYRPPSGKVKTFETFIKNTIEKINKENKTFYVIGDINLDALTCSKFPKTKSFFDMLLKFNVLSAINKPTRVTKTSATAIDNIFINNYLEMELETGIFMTDISDHFPIFIKVRNLKTMSDYEPKVINLKKRNLKTSNTNELSIRLKQETWSNVYRCQDTNEAFNNFLDIFLDCFNKTCPLEGIIIKTKTVSNPWMDKSLIKCSKKKQKLYNKYLKNKNTDNEKNYKNYKYFYQNLIKKAKNKYYSNEIIKCKSDSKKTWSVINKIMGRKKINTTSLPKRININNTDIFCEKQISEEFNKYFINIGPNLANKINPTTDSFKNYLTPTNKAIMYDKEFVYKEFEEAFSSLKKKKAPGFDEITSDLVIFNKTSLSRPLIHILKLSITSGIFPDVLKLAKVIPIFKCNEHSDITNFRPISILSVFSKLFERVIYNRIYNHFTKNKLFYPNQFGFQKNLSTEHAIIELVNQITDGFNQNKFTLGVFIDLSKAFDTVDHCILLDKLKYYGIINKTYNWIKSYLTNRKQYVCNIQSGVLNVLCGVPQGSILGPLLFLIYINDFCNASLKLNSVMFADDTNLFLTNSDIKNLYADMNIELIKVNNWFRANKLSLNSEKTKYILFHKKAQEENLPLKLPDLILNDNLIKKQASIRFLGVLVDEKLSWLPQIRYIQSKISNIIGLMMYRVRSYINKQSLKLIYFGLIHCFISYANISWASTQPSKLKKIYSLQKHACRIIYFKNKREHAKPIMKDMKMMDVFEINIYQHLIFMYQFNNNLSPTNFTNKFEININENYYLRANISNTYKLPQNLNKYTEYSIAYRGPNIWNRYQKGSKCMAKSLSSFKFLIKKEIFKI
>CR1-21_SP_gag#LINE/L2 190-951  [Strongylocentrotus purpuratus]
MAGQGPLTRKRSEGLSQDSLDPDFSNMSTMLKKLFCEDEFISALERCVEKILAKRLQANEDRLDRQEGELMELRNQLDKKEAEVQSLSLSMNKLSEEVDMFNMRANDLEQYSRRNSVRIFGVPESKGEVTDQLVIKAVSDHLPCEISPSDIDRSHRSGKPRPDAKKPRPILVKFTQYKKKAAMMKDRRRLKGSGISIQEDLTQTNHQILMKLVNHPKVEAAWSIDGRIMAALKTSEEGISMKRAFSSLRQVSTL
>CR1-21_SP_pol#LINE/L2 1274-4222 [Strongylocentrotus purpuratus]
MDDNVQDYLDHVVSDCKYMDCSDFQCNNLSKISIMHMNARSLFKNYEDFLVFLSCLKHNFSVIGISETWFKQTTNTCMFDIPGYSLLQVCRSNKRGGGVLLYVRDGIDYKLRTDLSGEHAGFESIFVEIAIDNVKSIVGCVYRAPDNDIASFIHSFDYHMQVIGREKKDVYLLGDFNINLLNCDSDGRVKDFVDFLTSFGLFALITKPTRITSTTSTLIDNIFTNCIQDDFDCGILCSDLSDHMPIFSINKGKSLSNEKVNDTVFRRVITNERVQRFKQDLLTIDWSLLYSLIDVDDSYNYFLRIFGNLYEFHFPLVRLSRKKKCKKPWITQGLLKSINHKNKLYCKYIRHKSEANRKKYIDYKNTLTNLVRNNKKSYYGDVFKSTQRDIRKTWFHINDLLGRGKKDPIPDEMYHGEIHLNSNLDKAEYFNKYFINLPARISREIPPVQTLFEDYLLPRDNPSSLFFRPTTVHEIVNFVLDLKPSKSSGSDDISPRVIKDCMHVIAGPLCDIFNKSMSQGFVPDKLKIAKVVPVYKKNDRKCIENYRPIALLPIFSKILEKLVYKRLNEFLLLNDVLIPQQFGFRKNCSTTMGVLNLVNTIICAIDSGNYCLGIFLDLSKAFDTIDHDILLRKLNHYGVRGIALNWFKSYLENRLQFVVVNGAKSQSSNVKYGVPQGSVLGPLMFLIYINDIINSSQLFTYSLFADDTCLLYSHKNVHSLMQSANTEICRLFTWFCCNKLLLNTGKTQCVIFRSRGRKIPENIHPLVVGGQQINRSQHVLFLGVTVDEYLSWKEHLDKVCTKVSRSTGVISKLRYFLPQYTLVTLYNAIIMPHLMYCNIAWGHTFRTHVHKLQVLQKKVVRYITNSEYKTPSTPLFLQLHILPFDELVSLNCLIFMFKCQSLQYTFLTNVFVENSSIHHYHTRQSSLVHQSYARTHTALKSFRTVCVKKWNKLPLNIISITTLSRFKISCSKHLFDRLLSDT
>CR1-22_DR_pol#LINE/L2 5-1477 Fragment via tfasty with CR1-9_SP_pol, 2 frameshifts [Danio rerio]
SVFLKTYKDILHGPITHLINLSITQGIYPDAWKLAIVTPIFKAGEQTNVQNYKPISILPTVAKVAEKWVAQQMIAYLNAGHTPLHPMQFGFKTNHSTESANCYLIENMKSKLDRGGVIGAFLDLKRAFDTVNHEVLLSKLTHFNFSSEAIXWITSYLTNRKQCVRLGNSQSVYRISNCGVPQGSILGPILFSLYINDLPQVCPTINIQMYADDTVLYVHAKNKQLAANYLTEALVHVSDWLCESYLNLNTSKTVCMFFSQSLTVTHHPDVFVKGEKLRVVSDFKYLGLILDSQLTFQKHAKKVIKIVKFNLANFRHIRPYLTNEAAKLFMHSMIFSHITYCLTSWSHASKTVLKSVESLYKQALKVFDQKSIRYHHCNIIQKHYLLSFDNSMKYLADACMIFKILNGYAPPPLCEFVTHKNNNGQATRSVTRGDCAVQFRRTTFARSVFSVRASHFWNTLPIDLRGVTNYSTFKYKLKKWLKANQVCNHV
>CR1-22_SP_pol#LINE/L2 2-1666 Fragment [Strongylocentrotus purpuratus]
IVNEFNDFFVNIGPNLADELPNTDVAYGDFLGQNIEQSLFWKPITAVEIKSQVLLLDTKKACGHDNMPVQLIRDSAPYISHPLAYIFNLSLETGKVPDEIKIAKVTPLHKKGPREDPGNYRPISVLPVIGKVLEKLINIRLIQFLEKNDIFYYHQYGFRKKYSTKLSLINLINSTLKSIDQGKVTLGMFIDFKKAFDTINHNILLGKLSSYGIRGLPLEWVKDYLSNRFQFVQCGQTLSERKKIRCGVPQGSVLGPTLFLIYINDLPTVTDYFNFRLFADDSNLFHTFSADQGEIDVNEVNNNIQKIHKWCTANKLTINSMKTNFMLICSRRKKIGINGKLKIAGEEIKEVDVATFVGVHIDRHLSWKSHIRFVNQCIRKKVGVLFRLRHFVPSRTLILLYKAFIQPHISYGIEVWGSTYKTSLRSILYSQKMAVRAITFSEWRTPSDPLFKRLRILNVYNLHDLSISTFMFDLVNGNLPHILIEYCDIIEHSYSTRQKEGGQLRLPKLRTTQGQFSLSFVGSEFWNRLPVDVRLTRSRNRFRNSVTSHLLNKS
>CR1-23_SP_pol#LINE/L2 792-3686 No obvious gag yet. [Strongylocentrotus purpuratus]
MIPELCSTGLKICHININSLPHKMDELKILLGNDPFDIVAISETHCDSTITDLDISLDNFCVTRKDRSRHGGGIALYVKNNISYEVISQLDNELEVIFVKVKQKQTHPLYLGVVYRPPNSPNEFFDKLSEIIHSISENAGEIIIIGDFNCDLLPEICTPFSRALLSLMDTNLLHQLISVPTRVTPHTKSLIDHVFSSIPEEHQHTGVVKTHISDHYLIFTVFGYARAKQKNDDNIIEYRCFRHFSNDNFVTMLQNLPFNEILNDKDPNHAWQCWVDLLISAVNKHAPVKSKRIRSKLCPWITGDLIEAMNRRDWLYTMATKPSNPDSSEFWSEYKSLRNEITCMIRNAKNDYINALLHENGGTPNAMWKTLKLISSSKKESNLKLEVDGEEVIDAEKIANHFNNYFVDAVDTMFNPLNFENDVNNSTIDRASEPSVHSDTVDTVPPVNSFDLPVITDEFVMKEIERIPIKKATGPDDVSIKLLKFACNSQNVIQSLTYILNSSLDQGIFFDEWKIARVQPIYKAGSKLSVENYRPVSLLSIPSKILEKAVNTEFQEYLKVNKILTERQFGFRPNHSCETALLCMVDLWAQNVDKGNLNGVAYIDMRKAFDAVNHSTLLMKLKNVGCTDRAIKWFRSYLGGRSQFVSIKGKKSSTRTINYGVPQGSVLAPLLFSIFINDLPTSIHSADMFLFADDATMSVQGKTLSEIQTKLNLALDEVYSWTQKNKLLLNTTKTKVMVIGSKQKLQTLNENNLNVRIKTTPIECVTQYKCLGVIVDSNLLFSKHVEKVALQMKQKLGILRRLKGTFNKHYLSMIYWGYILPHAMYCCTVWTNRSLHNYETINKLHKRAAYIISGCSWSTPSHEVLLQLNWSTLEALYSRAMGIMAFKCVHHLAPALLANKFILHDDVAQRMTRNSHQLKLESNRCNTEFFKRSFVNSAITLWNNLPIETRFSPNLNVFKSNLSH
>CR1-24_DR_pol#LINE/L2 3-2080 Fragment via estwise & tfasty with CR1-10_SP_pol, 1 frameshift and 2 stopcodons [Danio rerio]
EIGLIPDVEEAWAYFTLLFRTVLNKHAPFKKLExRIVLALGSAQIxLRSYAINTFWRKAKTSKNMSDWQSFRAIRNKCTQHIRQAKSSYFKQYLAGNGPDSQRFWNIIKTMENETVSSHLPILIKHDGVIITDKLNMVKHFNRHFVNAGCXLKNSSPVNQTSTLHSPASGPHTFSFRLIKETEVLGELLNLDTHKTAGLDDLDPSFLKKAAYIIAEPITCIFNLSLQTGVLSRDWKSAAVTPLFKGGDKTDLNCYRPISILPCLSKILEKLVNKQLIYYLETHNVLNQAQSGFRSGHSCVTATLKVLNDIICAIDKKEYCVAAFVDLAKAFDSVDHEILLDRLRYIGLSESCLVWFRNYCSGRLQSVRVEGFLSDPLLLQKGVPQGSILGPTLFNIYINDIASAAGDSYIHLYADDTIIYTSSSSLTTALSSLQASFLSIQRAFTNLHLVLNTNKTKCMVFNRNLPHVEIPPKISSLDGTEIDYVDCYKYLGIWLDGKLAFETHINELLKKVKARIGFLYRNKSSFTHSSKQHLVKLTVLPILDYGDLIYRSASKTLLHKLDVIYHAAIRFVTGAPFNTHHCQLYSSLNWPSLQSRRQIHWFLFIYKTLIRKTPQYLQSLLNIHETCRNLRSSNFINLCIPKVCTSFGRYSFQFSAADAWNHLQQTLKLSTFIPLSSFKNSIQSIVQDHCACF
>CR1-24_HM_gag#LINE/L2 73-897 CR1-24_HM_pol orf too damaged and close to CR1-18_HM_gag  [Hydra magnipapillata]
INIYFYILTYWLIMAITMDQVKKTIQKMFKEFKNEIDEMMKQQEKNVLNILSANTKIIYDRLDKVDLKVNDYAKHIKTLEKDVEEIKRSLNFHEHLFEEKIKTAIASQEKKHTSGIDKLNHSSDYVKIKSKLREMEDRSRRNNLRVDGLKESEGETWIDSELKVSKVFEEHLGLTNIRIERAHRTGQRDMSKPRTIVVKLLDYKDKVEILKKTSQLKGKNIYINEDFCAETVTIRKALREQMKVERAAGKYAFISYDKLVIRDWAANKSKNFSL
>CR1-25_DR_pol#LINE/L2 2-2791 Fragment (ca 100 N-terminal AA missing) [Danio rerio]
SDLRLSVFGCSETWLDGSVLDSEIEIANYSLIRRDRNRNGGGVCVYIRSDLSFNVRNEMNNASIEAVWVNVLLPKSKPILIGNLYRPPDQSNFYELLDESLNDFVKTHGSEIIICGDLNTDMLNVDAVLYKAFKHFSDFFGLKQIIKVPTRITPKSQSIIDLILTSDSDKISCSGVIECSMSDHFLVYLCRKVQKVKLMGHNTVLVRSMKNYSPNLFCDILDKVDWSGVWGSKDVEAAWDCFKDLFSNALNKIAPYKKIRVKQRSDPWITDEILQLLKIRDESFAKFRKDSDCSSYEFYKLKRNEVRNKIREAKRVFFKDKINENKFDPKKLWGVLRNLGYSNAKSRKSSKINLKVEDKLIVHPKDIAESFNQYFILLAKKLCGQLPGQPDIYNEDRVFSFYRQQDILPDSFSLRPVTESEVLKIISELKLNKAPGVDNIPARFFKDSVKVIAPLVSHILNLSIEQGKIPCDFKSARVIPLYKKGSTLDMINYRPVSILGVMSKILEKIVHEQIVNYITKKHILYELQSGFRALHSTETCILHMTDKIRRAVDGGNYCGMVLLDLQKAFDTVDHQILLYKLKAIGFDKVSLKWVQSYLHDRNQRVDIKGILSAPLSINCGVPQGSILGPLFFLLYINDLKIACSEELYLYADDAAILVSHHDKRALEEIMSSQLKSVYNWFLDNKLSLHMGKTEAILFASRVKLKKDDNLVVKINDWKIQSKNVINYLGCLIDNKLSGDAMAKKVITKICGKIRFLARQSDLLDVHSLQLLAGALIQPHFDYATSFWYSSCSQNLKEKLQKAQNKLVRIILKMHPRAHLHKESFNKLGMLTVSNRVCFLKLGMVRKMFNNVVPSYLMNYFQMVRQQHSYSTRSWDFNICLFKFRSLVGKNMFLYTSAIMWNKLPKAIKEIKDLRLFKKAIKRWLFDEDN
>CR1-25_HM_pol#LINE/L2 1161-4517   [Hydra magnipapillata]
MSTHCKDCFKKINKNHHYLQCYHCLNLFHKKCCRLNDIEFRILKNSKTSWFCISCREKIFPFSTLSDKELHLQTINDKVIHINEFENNISSFPNTIQXNLYNELNDFISHQLNNNNDNDVNLEEYPINCKYMDIESFNSSNIDKNNFSLFHLNIASLVKNFDELNSLLSLINHKFSIIGITETKLKHDILPTIPLNLTGYVYEHTPTKSYFGGALLYISNTLIYKLRYDLNMLKPKLLESVFVEIIIPKKSNIIIGCIYRHPSMDISEFIKSYLIPLFEKLSMEKNKTTFLIGDFNVDLLLANSDNSVSEFLDTIALNNFLPFISLPTRITNHSKTLIDNIFSNATSTNIFAGNFTSTVSDHLPQFLIHPLYRTKINTRKSCIFRRNLKQINCVELCSDFSKISWINVINVNEGKTNKSFEEFFSSFNSLLDKHAPLKKVSNRCLSRGLKPWITRGILTSIKMRNKIFKKFLKAKNPNNKLNLEKSYKAYRNLLVTLTRRSKKNHYSKFFSDNAKNLKSTWNGIKNLLNISSRVNSSPSCLSSTNSMIXDPIKISESFNSFFVSVPEDLQNKIHSSNTDFNKYLKNPNLNSMFIKPTDKNEVLSIIHSLNDSKASGPNSIPIPIFKALANDISPVLSELFNLSFTTGVFPDILKTASVIPIHKKDSKLECNNYRPISLLSNVSKLLEKLMYSRIYNFLNNSACFHIRQFGFRSNHSTSHALISITEMIRGAIDSGSFACGVFIDLQKAFDTVDHNILIKKLNYYGIRGIANHWFSSYITDRTQFVSINGFESTHKVIKYGVPQGSVLGPLLFLLYINDLSCSLKNSMIHHYADDTNLLYINKSLTTLCKKVNQDLHRLCNWLNSNRISLNVNKTEYIIFHSPQKTIDHIKIKINGKKLFPSKYIKYLGIYLDENLSWYNQLYHLKKKLTRANSMLSLIRYYVPIQTLRMIYFSLFSSHLCYCCIVWGQKRNFLLNNIASLQRASIRIMTFSPMRSDIEKKFSELKILKLHNLVKFYNCLFVFDFLQNKLPSPFSNFFIKTNEVHNHHTRNTENSKLYYSFFXTIKYGKFSIKQQCISQWNQCIPALXKKSKKKYPLVTNFLLLNRIQFKNILLECISL
>CR1-26_HM_gag#LINE/L2 99-935 pol too broken and too close to CR1-10_HM_pol  [Hydra magnipapillata]
MDKKNIVVRKKSNETGNIDETQIXTNVVRDIFHEMFSKQQKDIFKLISGNLKITNDKINELLDEIHKSKQICDSLKKENEKVNIKLKEITEKVRILEKTNKDIEESLTVTQDIQEKKVCELEKKIKNKNIIGEEEKNKLRQLEDRLRRNNLRIDGLPENDQETWDETEKKLLILFENELNIRNVDIERAHRVGKKEENKTRTIVVKILHYKDKIKVLNSSNRLKGTGIYINEDFSFETTVIRKKLLEEMKMHRKNGKYSSIKYDKLIVREFRKIKASA
>CR1-27_DR_pol#LINE/L2 6-1559 Fragment, via tfasty with CR1-19_SP_pol, 5 frameshifts. [Danio rerio]
VDKKEIIGIVKKCKNKSSMDWNNIDMNIIKKVIEDIVEPLTYICNRSFQSGKFPNKMKIAKVIPLYKSGDKQYFTNYRPVSILSQFSKILEKLFVDRLNNFIEMHNLLADEQYGFRKNRSTSLALTEIIEEITNKIDKKEKVVGICIEFXLYXKILKKAFDTINHNILVNKLERYGIRGVALDWISSYLKNRQQFVEIGNHKSSYLNVNCGIPQGSVLGPILFIIYINDMCKISELFKFILFADDTSIFCSGDNLPKLMEXLLKHEINKLKLWFDVNKLLLNISKTKVMLFWEIKKYHNIDLHIDNEVIERVYAIKFLGVVLNHKISWKPQINNVISKLVKTVAIVYKARFILDNKSMYILYNTLMLPYMSYCVEIWGNTYKSNLQSLCTMQKKVIRLIEHVGYLEHTNPLFFKLKILKFNDLVKFKTAQFMFKARNKLLPKCIQKFFLKKDKGVSYNLREKQNFRRLKTRTTLKSLCMSVCGVKLWNSLHQTLKQCQDINQFKKXYKYILLKEYSDE
>CR1-27_HM_gag#LINE/L2 130-888   [Hydra magnipapillata]
MAVTLPEIKKLLKEMFKEFKKETEEMFQKQEKAVLDIIGANIKIINDRFEKVEKNVDGNANCIKKLTKELEDIKVSLNFNEGLIDEKIVTNNKYLDKKMEHTKIDNVLKEKQRNLEDRSRRNNLRIEGIYENDKESWGDTEKKVQTFFTEKLGLKDVEIERAHRTGRKNDGRPRTIILNLQKYKDKIRILKELYRLKGTNTFVNEDFSRETVAIRKKLFAEVKERRLNGESVTVRYDKIVYIKTSFKNNFNE
>CR1-27_HM_pol#LINE/L2 936-4023 via tfasty with CR1-16_HM_pol, 1 frameshift.  [Hydra magnipapillata]
MATNENFESRVFKIQKTNYSTLNENLDSDYNIYHNKFSDCSYYFPSQLEGFLFKNENERNNNQMLILHLNIRSLNSNFEKLLDLLEETKHVFNIICLTETWISLEDLNNFHLPHFNTFLMERKTNKRGGGVLIYVHENFEHCFRHDLSVSDCDKEIATIEITNCNKKKILLSCCYRPPDGVSENFSMFLQQIIKKGTVEKKQNFIIGDLNMNCFLYNDNLKVKNFYDEIFETGSVSLINKPTRVTTNSATLIDNIITSDIFNNDLKVGILRTDISDHFPIFLKLDNTNSEKTLTAQRVIRKRIYNEANLNLFKNQLSLLHWNNINFNDNANNIYESFFKTFFSVYDANFPIIENKITTKSLNTPWITKGFKKSSKIKQKLYINFLKTKTPKNEKIYKDYKNLFEKIRKNLKKNYYSQLLNTFKNDTKRTWQIMNEIIGKQKSCSGFLPQMVRVDNKSLYEPRTIAQEFNKFFIDIGPTLSKKIPKTKSLFTDFLVPIDNCIGSVELSSELLFEEFERAFKSLKKNKAIGADQINGNVIIDCFEQLKVVLFKVFKASIHQGVFPELLKIAKIIPIFKEGDKSIISNYRPISVLSTFSKILERIIYNRVYKYFHVNKLLNINQFGFKKDSSTEHAIIQFVREISKSFEKSQYTLGLFIDLSKAFDTVDHQILIHKLKHYGIKNKVLKWFESYLSNRKQFVPSNDGYHTNCLSITCGVPQGSILGPLLFLIYINDLNKASKLTSIMFADDTNLFLSNSDIFELFKTMNKELIHVSSWFKCNKLTLNSNKTKWTLFHSLSKKRYLPLNLPKIFIDQNEIKRDSVTKFLGVYLDENITWNHHIDYISTKISKNIGVLYKARIYLNKKILIKLYYSFIHSYLNYANIAWGSTEKSKLQRLYRRQKHAIRLICFANRFSHAKHYFIEMRILNIYELNIYNVLCFVYMWKNDLSQSVFKDIFTPKPINKYNLRNTDFLNEPFCQTNFNQFCIVYRAPHLWNKIVLPNFDFELPITFRFFKSKLKTLIFSLEDVLCYY
>CR1-29_HM_gag#LINE/L2 199-915   [Hydra magnipapillata]
MAKFTVSQIKELLELHESTLLKIFNDKFEKIENKLISMQVENTTLKNEISELKKSAEFINEKYEKILNEVNDSKKKASTSNLNKTSIELEHSDNIIKDKLAELEDRSRRNNLRFNGIQESENETWEESEKKIHELLNSRLGINNNIIIERAHRTGKLDYGGKMKNRTIVVKFLNYKDKQTIMENYSKLKLWTERLYINEDYCERTTELRKKLFIEAKELRTKGKYAKVVYNKLVTRDA
>CR1-29_HM_pol#LINE/L2 970-4050   [Hydra magnipapillata]
MDSVLLDNFKLTFNFLQTNKYLIDERSDPDLNYFSEAGALQNNCCYFYAHEIKDFLERDHLNALHINIRSLKKNFESFCLCMKDTLNVFNIICVTETWCDSDEVNYDCNIHLPGFKIISLARKANKRGGGVLIYIKESFQFFTRLDLSISDDDKEILTIEILTQKNKNILLSCCYRPPSGKIECFNTYLNTNIMKKADHENKLIYIIGDYNLNCFDYHVKQSTQKFYNELFKNGAFPLIDRPTRITEKTASIIDNIVTNDVFNESLKKGIIKSDISDHFPIFFSINIKPKVLPNEKTTFLKRIYNEANLLSFHEQLSLLHWKDINTSSDVNFAYNQFFKSFYEVYDVNFPKREINLKTKSVKSPWITNTLRKSSKVKQKLYIKYLKEKTIESKTIYKKYAREFEKIRKNLKKKYYSDLLMRYECDSKRTWQILREITGKTKIKSCALKNGIKINGDISYDPREIAIELNKFFVTIGPNLARNIPNIKKTSDISSIALANLDFLELSFEEFETAFSALKPNKASGFDDINGNVIKNSYKAIKDVLFKIFSLSIRQGIFPDQFKIAKITPIFKGGDLTNINNYRPISVLPVFSKVLERIIYNKIYTHLTNNNLLFNHQYGFKKNNSTEHAILQLTRSITESFEKSEYTLGIFIDLSKAFDTIDHKILFKKLKNYGITGNVLKWIKSYLSNRKQFVTIDASSPISLLEITCGVPQGSILGPLLFLIYINDLYKVSRLKTIMFADDTNLFLSHTNITTLFQLMNVELNKISYWFKLNKLSLNIQKTNWTLFHPPSKKKLLPYEMPSLFIDNIEIIRVNVTKFLGVYIDDNLSWKNHIENLYNKTSKSLGILYKARNFLNKKILTQLYFSFIHSHINYANIAWACTNKSKLEPLYRHQKHAARLIHFSERLTHAKPLLKKMNALNVYQLNVYNTLCFMFKCKTNSSPVSFHDLYMLKDKNKYFLRNNNFIKQPFFQTNLSKFCITSRGPFLWNKIVLKNFSQDFIQQCNYNSFKRKLKELIFTIDDLSIYF
>CR1-32_DR_pol#LINE/L2 1-2436 Fragment, via tfasty with CR1-17_DR_gagpol, 1 frameshift. [Danio rerio]
YCIFHFYLLFSDILILEDNIHVLCRTDLLLINNLLDSFGLSQCVVGPTHEHGHTLDLVLTSGFSVCNLQIADTVFSDHKAVLFNSYFTFNCQADDSSVAVETRVLSASTASNFSSAFDMGSSRSLMEFPSSDMGPEELVIQFNSICSNILNSVAPLKIKKKKVKPQPWVNSNIRALRQECRRAERKWLKDKLQVSYESLRDCLTTFQRAVKAARSNYLSDIISKNCHNSKVLFSTINTILQPVVSPSISSSVDTCEKFLHFFADKIVGIRSQISPVVSVSTISVAPLKNLASFIPVSLSQLNDIVAHMKPSGSSCDVIPATLFKEAMHSIGPSVLSIVNSSLSTGIVPSSFKHAVIQPLLKKANLDVSDMKNFRPISKLPFISKILEKVVSVQLNEFLANNNIFDKFQSGFRARHSTESALLRVSNDILLEVDSGSPVVLVLLDLTAAFDTVDHDILTDRLREHAGIQGLALDWFSSYLKDRTISVSLGNSSSSVMQLMCGVPQGSILGPVLFSLYLLPLGKFFEKHGINYHLYADDSQIYFPIKSRDQSSLQALLNCLADVKCWLANNFLQLNEDKCEIIVFGQKGSDSNGNLSLLPGKIHSSVKSLGVIFDSELKFDRQINAVVKNSFFYFRYIAKLKSILSFSDLEKVVHAFISSRLDYCNALYLGVSQASLSRLQLVQNAAARLLTGTKKREHITPVLVSLHWLPIQFRIQYKVLLYVFKSLHGLAPEYISELIIMHQPVRSLRSMDRLYLQVPRSRLKCRGDRAFSVAAPRLWNDLPLSLRTAQTFESFQRSLKTHLFSLAFNHVM
>CR1-32_HM_gag#LINE/L2 145-858   [Hydra magnipapillata]
MSKNFTITQIKELLDIHENTIIKLLNDKIERLENKFNIIVEENKYLKSEVNELKKSVEFINEKYENIKNEAANLKKTNDINNQGNEKKKLEDDVIINKLAELEDRSRRNNLRINGIEDCDNESWEESEKKVQEFIKSKLGIKYNVDIIERAHRVGRKESDKPRNRPIIIKFLNYKDKSTILEKYTNLKLWNQKIYINEDFSERTIEVRKKLFAEAKELRSKGKFAKVIYNKLYTRDI
>CR1-32_HM_pol#LINE/L2 859-3997 via tfasty with CR1-14_HM_pol, 3 frameshifts.  [Hydra magnipapillata]
MNYLYIHILYYLLIFNMDSNNSNDFEKIFNFFQTNVLNFNEKSDPDLNYFNEINTSEFECKYFYPNEVKYFLKIDNINSYLNVVHINIRSLKKNFENFLNVICETDNSFNLICVTETWSSNEDFENNSNLQLPGFNAITLERNINKRGGGVLFYVRNSLLYNVRRDMSVSDENKEILTIEIINKKSKNLLISCCYRPPTGRTEDLSNFLQKKILEKTNLENKKNYLIGDFNLDCFDYYENQNTRKFYNNLFETGTIPIINRPTRITNYSSTLIDNILTTDFFNISLKKGIIKTDVSDHFPIFFSVNLDFKKEMQKSVTIKKRLFNNINLNSFKEHLLLINWEHLNFNNNINTIYNTFFKTFYKVYDTNFPMCETVVKTKDISCPWITKGLKKSSKIKQKLYIKYLKSKSVKHKNNYITYKNLYEKLRKNAKKIKYYSYLINKHKNNSKQIWKIMKEITGKLKTNTNSLPHEIKIDNKLINDSNYIAAEFNKFFTTIGTKLANSIPYTDDKSAEFQTSTSSSFHFTELTYDEFEIAFSSLKRNKTTGYDDINVNIIIDFCDVIKHIIFKIFRASISQGMFPDCLKIAKVFPVFKTGDHTNINNYRPISVLSVFSKILEKIMFNRIYDHLINNKILYENQFGFKKNNSTEHAILQLTRDISESFKKSHFTLGVFIDLSKAFDTVNHQILIKKLLSYGIKDNTLNWLKSYLTNRKQYVYNKESSSQVLMNVTCGVPQGSILGPLLFIIYLNDLHKTSSLTKIIFADDTNLFLSHENINILFNNMTNELKKVSDWFKINRLSLNTAKTKWTLFYPLYKKHRIPHLLPELYIDNVMIKREKVTKFLGIYIDENLTWKHHINIISSRVSKCIGILYKARNILNKRQLTQLYYSFVHCHINYANIIWGSTQKTKLKTLFNHQKHAARAINFKNRLTHSAPLLKDMKALNVYQLNIFNILCFMFKCKENLSPQVFQYLYSLKPKNKYNLRIDNNLNAPFCKTKYDEFCMSYRGPLLWNKIVLPNFDFSIKLNYSSFKTKIKEIIFSIENIFIYF
>CR1-34-DR_pol#LINE/L2 3-3398  [Danio rerio]
MKMAPVFLSACRRLVLVYGSFILLFFLLNGVSSLHKYDREFLLSIRNFVTIRGYDSNGRRPPDPTFQTRLPVNIGCIPDCLLNRKKRYRKRGKRGGVSVRLRRLTLPGASTSHLELSAVEGVGCELLSSRRHWPVSCEVRSSFLRYIIPDYSETMLHSRTVPLKFRNGGINALNLKALEYVPNPTHSSDTLSNPLNVESLRMALINARSISNKTFLLNDFISTRDLDILCITETWLSAGDSDCLLEVSPTDFNFLSTPRLSGRGGGVATIFKNIMKCRSLAVQDYSSFELQLVKIDGCVPIVCALIYRPPKYNKMFIQEFSEFLTTIVPRFEKILILGDFNLHICCPKEPMVKEFLHIIDSFNLSQSVSKPTHKFGHTLDLVLSLGISITNIDIEEGYLSDHNPVVFNIQIPSPFLNSKPPDRRARCLNPSTASDFTKAYSLLPSLPFGLEINESMSLFNSTCNEIMELCAPLKILKPKAKQQPWLNSDTRSIRQLWRKAERIWKKTKLQVHYEILKDSMIKYQKAVKAAKAEYFANLIKKAPNNPRVLFKTINLALNTETTSGLAICQTTCEKFLQFFISKIEALRAGILRQDAFLDSTIPPSLAHFLDEFKPITLHDLVDLVLHMKPSHCSLDIIPPHLFIQVLEVVGLDLLSIVNSSLLSGVVPSCFKHAVVQPLLKKPNLDSSDLKNYRPISKLSFQSKILERVVFQQLSSHLIGNDILDKFQSGFRTRHSTETALLKVSNDIFLTVDSGKCALLILLDLTAAFDTIHHNILIERLRLWAGIQGNVLNWFSSYLSGRTFSIELGNFSSSSARLECGVPQGSILGPALFSIYMLPLAAICKKHNVSYHLYADDTQLYLPIKMGENSVLQSFFTCFNEIKEWLAGNFLHLNESKTEVVVFGPPSVCESTINKLGSIKPKVHSHVKNLGVTFDTELKFDKQINSVVKSGFYQLRNIAKLKPFLSFKELETVINVFIMSRLDYCNSLYSGVSQASIARLQLVQNAAARLLTGTKKFSSISPVLLSLHWLPVQFRIQYKLLLLVFKSLNGLAPTYISELLHWHTSLRPIRSENTFQLVVPKTRLKSRGDRAFSAAAPRLWNGLPLQIRSCSSLGAFKSHLKNHLLSLAFDCN
>CR1-34_HM_gag#LINE/L2 24-1086   [Hydra magnipapillata]
MAAKFTEDLLLQESKTKNNNNANQTETISYLNDFESFLLDFAEPQANLRMEHSKIFMNAINNIHKRKKRADTESIYEEVLKHFENRLEKLHVSEFLNLLVSKNLLSCSIKNGKESYKVLIVPETKLEPDLCIINHKKVKTLESEIKILNYELKNLKSSEISLSILKDENLFLKEELSEXRKIIAVLIDKLEVKSTVTDLKSTQNLNFLNDFDFNSPLNQNSINSPKAETINAFRQQECGIKIIDSKSKEIKDRLNNDLTDVRRQLNIKYLNFKKYNIPELAVSSNSNNNKTMRNSINNFENVTNQLVSVRKNYQSDFLKYKNLSTNGVVSTSSSLSTKAVGNVKNTKKSNKKSKQ
>CR1-34_HM_gag2?#LINE/L2 1100-1610 Fragment of a second gag, C-terminal fraction of gag formed through a recombination, pseudogenic fragment, or in silico artefact? gag2 product is not (closely) related to the first gag protein. Lines up nicely with begin of pol.  [Hydra magnipapillata]
YPRDNQTDEYKWPVGTTLICGDSILMGINEKKNAxKLGKVKVRVFSGATIEDMHFNLVPLLKKEPSKIILHVGTNNCTNDSSESALAKLKDLVSFISKSNPSCSIILSTPIRRFDNAKAQLTSLHLAEKLKLTKFNIIDNSNLSNEHLGLRGLHLNTRGSGRLAMNFIAYL
>CR1-34_HM_pol#LINE/L2 1612-4573 via tfasty with CR1-11_SP_pol, 1 frameshift.  [Hydra magnipapillata]
SLFDRHSPIDSYHQSTLPSTIEEISLNSDLDNLRAKYPKNISLAFLNINSIRNKFSDIITYINKTVDILILGETKLDDSFPINQFLYPGYKTPYRLDISQHSGGLLVYINENIISKRLAKKDFPRDIQIITFEIKLRMRKWLIIATYKPPNQNCDYFFNHLKGVLDFYLQSYLDFILIGDFNIQPSEKKNEGIPSTLSCINLIKQPTCFKSVNNPSCIDLILTNRKLSFQHSNTFGTGVSDHHHLIYTMLRSTFCKLPPKKLIYRSFKNFSSEIFAKILRFNLKSCYDISTFNEIFSNLLNIHAPLKSKILRGNNKPFITKDLRKAIMLRSSLYKKFLVDKSDFSALMYKKQRNLVVKLNRKNKKKYFEQINTLSNSNTSLWKLTKPFFSDKSTNSNERITLTENGNIISDSSLLTNIFNKYFINVALPSSMADHIKWSFSPCTSDPVESAIKKYVDHPSIRNIKNKFKMNAHNFKFHCITPDDITKIIGSMNEKKKTSGEIPTFMLKSYLIYFRDSLTDCINNSILDGTFPSFLKMADVLPCFKKNDPTDKANYRPISILPALSKVFEMIVYEQILLFMEPKFDKLLCGFRRGYSTQHTLIFLLNKWHECINNGGIVGTLLMDLSKAYDFIPHDLLIAKLEAYGFSKESLKFLISYISGRKQRVRIGPSVSNWVDILSGVPQGSILGPILFNIFINDIFFFIKDTELCNFADDNTLYACDYSLEKVIFRLQKEATNTIAWFKFNSMVANPDKFQLLLVGLKNTKNQYLKIGNITVFASDRVKLLGVTIDKNLNFGEHIKYLCSKANGKCFALSRIRSFLSRNKATLLFNAFIMSNFSYCPLIWMFCSKYYDNLINKIHKKALCIVHKRFDLCLDELLSFDNSPRIHLRNLRFLMIEVFKSINCLNPQFMKDLFNTKNLPFKLRCSKKMILPSNGSKYKDQCCTIFRAISLWNTLDNKTMSSKSSEVFKKHIKNWYAKNCYCKICRF
>CR1-35_DR_pol#LINE/L2 1-2419 Fragment via tfasty with CR1-1_DR_pol, 4 frameshifts. [Danio rerio]
NIAMKYDRFLLVGDFNIHVCCQANPLSKEFLNLIDSFSLVQWITDPTHVLGHTLDLVLSHGLAVSDIxSDLSLSDHKPILFSMSLPTLPLSTNVNVTLSRYYSPTFGANFNQCFLETCSHHSLDLPLFDLDADKHLSLLNSAWLSVLDVTAPFKPHIKNVKSALWHNSNTRLLRQACRKAERKWKKDKLQISYEMLKDSLSAYQSAAKSAKASYFTDLIVKNHSTPKALFSVIHSVVNPAVQSMPVASNALCESFLRHFTDKISILRTKLCSAPIDPPPPTLHLVYWDAFDPISLQSLKNVIANTKLSFCPNDIIHPKFLKQIIDTVGPGLTSFFNKCLSTGSFPNELKMATVTPLLKKPSLDPSILNNFHPISVLPFCSKILEKIVLDQLQSFLKTSNCITEIFQSGFKMAHSTETALLRVLNDILLATDSGDSVVLVLLDLSAAFDTVDHSILLSRLESVVGLKGTVLKWFKSFLSERKFSVKLGNFSSSFADLTCGLPQGSVLAPSLFSLYMLPLGAILRSHGVSFHFYADDTQIYLPIKRNDPLALSTLLRCLDEIKIWLSHNFLSLNEDKTEVIVFSPTDNVQASCLDLGCLSAFRSPRVRNLGVILDESLKLDKQISLVIGSSFYQLRLLSKVKHFLNPTTLEMAVHAFITSQLDYCNALYCGMSKSQVSHLQLVQNAAARFICNSRKYDHITPLLRGLHWLPVQFRIDFKVLLLIYKSLHNLAPSYLSELLHLYTPVRSLRSSEQNLLSVPQSRLKRRGDRAFSVAGPRLWNTLPLEIRMAPSLSIFKSLLKTYLFSLAF
>CR1-35_HM_gag#LINE/L2 88-793   [Hydra magnipapillata]
MAKFSATNIKDLLEIHENTLIKLFNDKFDKMEIKFNIIQEENNILKNEMKELRKAVDFVSEKYESTLAELKELKKNTISNVELTDNIKFNDKNNDVKDKLAELEDRSRRNNLRFNGVEESENESWEDSEKKIQEVLKSKFGFTNNLEIERAHRTGKKEKGVKKNRTIIVKFLNYKERNAVFEKFIKLKLWNEKLYVNEDFSERTMEIRKKLFKEAKELRAKGKFAKVIYNKLITRDF
>CR1-35_HM_pol#LINE/L2 832-3927  (CR1-11_HM_pol very similar and broken)  [Hydra magnipapillata]
MDSNYQNNFDSLSFNFFQSNDLVLDTNSDPDLNYFCDVGALRNNCSYFYNKEIKEFISRDHLNVIHFNIRSLKKNFENLCTIIEETSNIFSIICLTETWCEFDDAKSNLNLHLPGFNMIPLARKANKRGGGVLFYIKENLRFFIRPEMSISDDNKEILTIELLTNNSKNILISCCYRPPSGHIESFNAFLCNDILKNSFKEKKLNYLIGDVNLNCFEYHVNSNIKKFYDDLFEHGSIPLINKPTRVTSTSATLIDNIITTDIFNETLKKGIIKSDVSDHFPIFFSINIDNKLIQQHKKVIIKRFFTDANLASFKDQLSLINWNHINSSFEANEVYDTFFQTFYEIYDVNFPKREFIKTNKSLKSPWVNKDLRKSSKIKQKLYIKYLKKPTLENKIIYKNYAKMFESQRKKFKKRYYYDLLEKYKHNSKRTWQIISQITGNSKLKLCSIPNTIKVDGIFLYEPKQIARELNKYFVSVGPNLAKNIPNMINPINDYVFPLISSLNKFEVSSSEFESAFKMLKTNKAVGPDDINCNIVIDSYDTIKHILFKVFKCSINQGIFPDQLKIAKITPVFKGGEPSNVSNYRPISILSVFSKILERILFNQISNHLAINNILYINQYGFKRNNSTEHAIVHLTRSITDSFEKSEFTLGVFIDLSKAFDTIDHEILFKKLEHYGIIGNALKLLKSYLKHRKQFVYIDGSSSQDYLNIDYLNITCGVPQGSILGPLLFLIYVNDLHEVSKLTTIMFADDTNLFLSNNNIDKLFYDMNIELIKISDWFKLNKLSLNIDKTKWIFFHPRFKKHLLPSNMPLLHIDNIQIKRVVFTNFLGIIVDENLSWKNHIGHLCNKIAKSIGVLYKARSVLNKHSLTQLYYSFIHCHINYANIAWGSTHKSKLKPLYCQQKHIARIINFKNRFTHSRSLLFNMNVFNIYQVNVYNVLCFMFKCKTNSSPASFFDLYSLKEKNKYSLRNDNFIKQPKFQTNFGKFCISFRGAFLWNQIILKNFDFSHEWNYYMFKRKLKKVIFSIENIFIYF
>CR1-36_DR_pol#LINE/L2 87-1628 Fragment via tfasty with CR1-1_DR_pol, 2 frameshifts [Danio rerio]
LQKLLSLNSPSCDLDPFPTSVLKNCLTVFGAHITTIVNASLSTGFIETALKTAAVTPILKKPGSDSSDLTNYQPIFNLPFLAKVLERVVVGQLQEHLQANALFDAFQSGFRSGHSTETALVKVVNDLLLIADSGACGILVLLDLTAAFDTISHSILLDRLHNWVGVDGIVLNWFKSYLSGRSQFIYVGGSQIAYCPLCHGVPQGSVLGPLLFSIYMLPLGQILQKFGIRYHCYADDTQIYINTSPNSSASMSSLNACLTEIKAWMQHNYLKLNSSKTEILLVGTPSNIKRCSEFELTVDGSVLSPSPQVRNLGVLLDSQLSLKPHFKHVTKTAFYHLRNIARLRPFLSRPDAERLVHAFITSRLDFCNSLFGGLPANSLCKILQYIQNSAARVLTHTSSRSHITPVLQQLHWLPVKSRIDFKTLILTYKAVHGSAPGYICDLISISSASRCLRSASGPTLFQPRCKLSTMGGRAFSFRAPKLWNALPTNIRNAGSLDGFKKLLKTHLFRTVFNL
>CR1-37_DR_pol#LINE/L2 2-2510 Fragment via tfasty with CR1-18_DR_pol, 1 frameshift and 3 stopcodons. [Danio rerio]
YRPPSSKSGFYDNLKHFMKELDPKKELILVGDFNINWTEKLQRKKLQEIVSSFDLVQLIQGPTRITSSSETQIDLIFSNKPERVTKSINLLTGISDHNLILVVRKLTKHRFLYQQDKRNVLNVIPKKLKNxFEEEIKKLDxSEILSTDNLEDASECLMAEINKTKSKFSRNITFSKKKKKQNLPWLNEQLWKLMRQRDHALKKSIKSGLAHDKRTFQQLRNKVVKELRQAKAIFLIDLINNAKGNSREVxENINKVQKKITINNKAIELQSQGRLIQDKYQIARLFNNFFIDSAQDLAQGFSFRSKDITLPNYDFTVFNISEVSESCVQKFLSQLKSSRAKDAFECDSAFFKKYANVFNTPLTHLVNLSIRQSYVPSAWKSAVITPIFKTGDPTNLVNYRPISILPTASKVIEKVVCNQLVEHLNLDKFPLHSMQFGFRARHSTETANCYFIEQIKSSLDRGGVVGAVFLDFKKAFDNVNHNILLSKLSRFNFSVNALSWMESYLKSRKQCTRINGACSPYINCNFGVPQGSILGPILFSLYINDLPTVCPEVQVQMYADDTVVYTHAKTKEHAAKKLTAALKKVSDWLYRSCLTLNVSKTVGMFFSIKKNEEHCSDILVNGEVINIVDHFKYLGIIIDSNLNFKKHIKKVSKSARASLRIYRNIRHQLPMAAAKLFMNTMILPHLSYCATSWSHTNITTLKPLYVIYKQTVKILAKKPRSYHHCNCIAQQKLLTFDSFLFYADVCLMYKIFHDLAPPPLKQCVIVGKDNIRQTRSSVRGDCSVKLKRTAFGQSVFSVKAAERWNKIPVYIRESSTFNNFKTVLKIWLKQNQICSH
>CR1-38_HM_gag#LINE/L2 3-623 Fragment.   [Hydra magnipapillata]
KVEKSILENAKKISTLATEVEEIKVSLNFHEELIENKIKTALDIFMKSKCTPNEIQNNNTELKKINSKLREIEDRSRRNNLRVDGVKEDDNESWLESELKVKTIFDEYLGIKNVKIERAHRAGKVGIKEHRTIVLKLLDFKDKEAILKNSSKLKGKNIFINEDFCTETNRIRKDLREKMKIERQSGKFAYISYDKLIVREWNAKKK
>CR1-38_HM_pol#LINE/L2 780-3916 via tfasty with CR1-29_HM_pol, 2 frameshifts.  [Hydra magnipapillata]
MNPKTDKYKNLFENISDKVFKINDQNTFNKHDPDNSFIDNFSLMNMETPYMFPHEIKKYLKEVEPYEGLSLIHLNIRSAKANFENFKIFLEGSNFIFNIICLSETWLTDDEFNESVRFQLNNYEGVHLQRKSKNRGGGVVIYIKNSLRYKLRNDLCISDYDREFVSIEIINNGFKNTIISCCYKPPQSSTEIFSNHLQNIILKSFQEKKSLFVVGDFNLNALNYDKNKETQNFYNDIFRFGVIPLINRPTRITRNSSTLIDNILTNSLFEISLKKGVIKTPISDHFPIFISIKTSNKIKISQKMTITRRHFSLDSQVYFKRELANIDWSDLESSNDTNLMYNKFIKFFLFFYEKHFPKVTKTIKLKDINSPWLSKGLKKSSKRKQKLYIKYLKKKSDKTKTEYKNYANLFEKLKKTAKATYYNKLLKKCQTDSRKTWQLLNEIIGKPKTSKPCFPKTIKINHKSIDNENDIANEFNNFFVNIGSKLASQIPRVNKSFDKYLIRNRNKLNNEKLTMLEIEEAFKSLKRNKATGIDDVNSNIVINCYNELKNPLFKIFKHSLKEGIFPEKLKTAKVKPIFKSGDASEIGNFRPISILSTFSKILERIMHNRLYTFFKENNLIYSKQFGFQKNTSTEHAILHLVEEIKNSFTNGEVTLGVFVDLSKAFDTVDHKILLSKLNMYGIRGRSNKWIESYLDKRVQYVYYGDNKLSNPSIIECGVPQGSILGPLLFLIYVNDLCMASKRISTIMFADDSNFFISGKYNSELCVEMNNELEKISEWFRANKLSINSSKTKFSLFHPSFKKKRIQSFFPKLFIENREIGRDTVTKFLGVFIDENLNWNKHIAYIGSKISKSIGIIYQSRYLLKKPLLKQIYYSFVQSYLNYGNIAWGSTYKTKLEPLYRKQKHAIRVINFKNKTEHSKPLFEQMSLLTLFELNVYNVLSLMYNSKMQKSPSIFYSLYKQKPEYKYLLRTNSTLLEPSCKNKLEQFKMTYRAPHIWNKFLLINLNNIDLKNLNCFKKTIKKSILKYKNLVSDFFLNLFINIFFFI
>CR1-40_HM_gag#LINE/L2 61-811 via tfasty with CR1-17_HM_gag, 1 frameshift.  [Hydra magnipapillata]
MDITMKSIEKIITKQLEEHKKSILKETERLLKEQEKSFTLIMSANLKIITDRLDTIEKDNNNNKSKIKNIEKDLNEIKDSLSFQENKTLENISHLKKYYDNQINTLYKKSIDLENRSRRNNLRIDGLKESPGESWDDCEKEVKKFFNNQLKISKEVVIERAHRIGQKKNNKPRTIVLKLLNFHDKNKILNSLTHLKGTGIYINEDFAQETIEHRRKLWEEVKKLRSEGKYAILKYDKIFSRDFKNTRFQK
>CR1-40_HM_pol#LINE/L2 876-3971   [Hydra magnipapillata]
MANDFITKDFDKLRFDFFKTQNNIFANNLYDDDLFIFNGPDSPYFDTKTFKAELHNNIDEFTVIHINIRSLNTNIDKLKIFLFECKYSFSMICLTETWCSDENSYTNSNLLIPNYNLISYERKANKRGGGIITYIHNDLNTKIRNDLSISDSNSEVFTVEVINDTTKNLLISSCYRPPDGDIIMFSSFMKQIYTTSNVEHKKLFCIGDMNINYLSYHEHANTKIFFDDMIQHYIFPIINKPTRVTPTSITAIDNILTNSIQDPSLKVGIIKTDISDHFPIYFSLSQQATRVNNLKIKIIKRSINKFSTQKLKDSLAVVNWSKIYHECNLGHTNSAYNNFINIFLNLYNKHFPKVEKEIKAKYLTTPWITQGIRKSSKQKQKLYIKYLKNRNHFNLSKYKQYKNLFEKIKLKSKKLYFSKQIQKFKGDNKKIWDIIKEIIGKDKKNSNQLPPKVLISEKEFNNKKIISEKFNKYFASIGSKLASKIQPTNNSFENYIEDSRCSLVFKELEYEELETAIKTLKINKGPGIDNIPANIILNVFPEISKPIFQIFNSSIITGIVPDYLKIAKIIPIYKSGDTSFLNNYRPISILPVFSKLLERIIYNRLYKYLTTNKILNENQYGFQTQHSTEHAIVDLVNRISESIYEKKFVLGVFVDLSKAFDTINHEILLKKLEKYGLKNHTLQWFKSYLYNRQQCVITDDNYHSKLLKLTCGVPQGSILAPLLFLIYINDLPKVSSKLEFIMFADDTNLFYSSTNIKDLYDNVNIELQKLNIWFKTNKLSLNIEKTKYTLFHSNQQRNTLPNILPSLKIENIVIERTHETKFLGVIIDENLSWKSHINALNTKISKNIGLLYKAKPMLSQSNLKLIYFSFIHSYLIYANIAWASTHITKLKTLYRRQKHAVRLIYHKDKFTHTEPLFKEMNVLNIYQINIYQNILFMLKFKLGQVPNHFLNNFFINNVNKYNTREKGNFITPFKKTKLSQFSISYRGPYLYNKLVTKNKSICNLDSICNQNFLKKKLKNLILNLNRYSEFF
>CR1-41_DR_pol#LINE/L2 39-1725 Fragment via tfasty with CR1-4_DR_pol, 3 frameshifts and 1 stopcodon. [Danio rerio]
NSFLxFYYDLFNEKIFNIHQHLGSHPFRALHLNFHNLRFSFSSFQLPTTSEISNLISKSKSSSSHLDPLPTVLVKACLPSLIPLISAIIHSSLSTGTVPASFKTAAITPILKKPGSDPSNFNNLRPISNLPFISKILEKIVAIQLQSHLSQNNLYEQFQSGFRPLHSTETALIKITNDLLMAADSGLISILILLDLSAAFDTICHSTLINRLSTLGITNTPLDWFKSYLSGRTQFIQLKSFTSQHFTVSSGVPQGSVLGPLLFIIYLLPLGNILRKYNIQFHCYADDTQLYLSGKPSSCFPPTSLTVCLAEIKSWLSLNFLKLNSSKTEVLLVGTKSTLSKTDSFSLSIDDCSIYPSKQVKSLGVILDSTLSFDSHINNITRSAYFHLRNINRLRPSLTPSSTAVLVHSLVTSRLDYCNSLLFGLTHKSLRKLQLVQNSAARIITRTPSSHHITPVLQQLHWLPVHFRIDFKILMLTFKAIHNLAPPYLSALIHISVPSRTLRSSSSLHLSVPSSRLSTMGNRAFSRSAPRLWNSLPPAIRNIDSLTLFKSKLKTHLFKMAF
>CR1-41_HM_gag#LINE/L2 64-804   [Hydra magnipapillata]
MEITIKNIEKIITNKFEEQKRSLLKETERLLKDQEKNFTQIVSGNIKIITDRLDKIENELNINKVNMRNFEKDVNDVKESLNFQEEKIKEELTQIRKRYDLEIKNLNKKNTDLENRSRRNNIRIDGLKDMPGESWSDCEKSVKNIFTNNLKISSEVIVERAHRIGSYKEDKTPRTIVVKLLNYQDKNKILSSLKNLKGSGIYINEDFAKETMEERKRLWEEVKNLRNQGKYATIKFNKIYCREFRK
>CR1-41_HM_pol#LINE/L2 861-3944   [Hydra magnipapillata]
MAKQTKDFETQHFNVFKSANNALLDNFYDPDLHFFNENNFNSRFFDLKTFKNELKSLNNNFTVIHINIRSIINNIDKLKHFLVECNFLFSMICLTETWCSDESSRINSNLLIPNYKLISYERKVQKRGGGIMTYIHNDLTTKVRDDLSVSDADGEVFTIEIINQKLKNILVPTCYRPPEGDIKKFSNHLKQIFLKNNKEHKILFCIGDININCLQYNEDAVTKIFFDDMFQHYIFPIINKPTRVTSTSITAIDNILTNSFYDSSLKAGVIKTDISDHFPIYFSLFQDTKTNNSKTKVYKRKINKFTIQQFKDSLSAVRWDKIYQKCNLGHTNSAYNEFLEIFLKHYNNHFPIIEQQLKVKYLQCPWITRGIKKSSKKKQKLYIKYLKNRNEKNLNTYKQYKNLFEKIKKNSKKNYYSKQIKNATGDIKKTWNIIKEIIGNKKTKSNNLPARIIIDNIEYSDKNKIAEKFNEFFVNIGPNLASKIEYPNNSFESYLNDPQSELKYKELSYQELNVALNSLKLNKTPGIDDICSRIVANVFTVINKPIFEIFKSSIKTGVVPDKLKVAKVVPIFKTGESYLINNYRPISVLPTFSKLLERVIYNRLYEYLIQNKILNKKQFGFQKQYSTEHAILDLINSISDSFDKKQYVLGIFIDLSKAFDTVNHNILLKKMESYGVKNITLDWFKNYLSNRQQCVISDNYKHSKLLRIECGVPQGSILGPLLFLLYINDLTKTSKKLDVIMFADDTNLFYSSNSIKNLYECMNKELEKLNIWLKLNKLSLNTEKTKYILFHSKKQKNNIPTILPPLKIDKVNIKRTETTKFLGILIDENITWRAHISTINTKISKNIGILYKVKPMLSQDNLKSLYFSYIQSYLTYANIAWASTHKSKLNTLYLSQKHASRLVYNKYKLTHAEPLLKTLNALNVYQINIYQNILFMLKYNLGLVPSHFLDNFFQINSNRYTTRATGNFTLPKKTTKFSRFSISYRGPYLYNKIISENIELKTLNNSATLKKKLKHLILNIKNFIDMY
>CR1-42_DR_gag#LINE/L2 541-1269 [Danio rerio]
MICLLLSGDVHPCPGPHYAKPENFSDFISNPISSQWHAEGPRALQFGYVPGFGDGVLPVCNLEMGVEVVEARRLGTAGMDRRYGYSSHQESVSDPAILQVRTLGGGSLQSGYAHHTNLRRSVSMDACGGSVAEWETGSPVTKAEVPLRRRVRVESLDAGLGSGSTSGSVGDFWKSLRISMPLWNKGNSVPNELPNSFTSVNAGLVIPQVFTKPMQHVKTRTINPAIQKNKKKVFFRQLIIQE
>CR1-42_DR_pol#LINE/L2 1269-4114 via tfasty with CR1-23_SP_pol, 1 frameshift. [Danio rerio]
IWDPKVKPRGLLGGHLNVRSIISKSDEIHHLLLDSNLDFLCLSETWLHKNSPSAALEVPGFKIFRKDRVGSKGGGVMIYVKSGIQCNEIVWPNDTDLECIGLNLILSPQMSFTLMVIYRPPSSNVSFYENLKQVLKQCNFSKEVIIMGDFNINWDDKIVRKHLKQITDHFDLQQMINGPTRLTNSTRSQIDLIFSNRADRILKTFNMLTGISDHNLILVARKLSSKRLNSFVRKHDSYGVPKHKLDDFRRAVLQIEWDELLTGTDQDEDSQIFTKKLERTMTDFSCTLKPKNKKHTVPWMNSDILKIIKKRDLALKIAHRSKLTHDRQHFTMLRNKVVKCMRKAKADFFLRIIEEQEVTPNSIWNQLNYLKGDKRKDRSSIELMVNGEMINKPADIAEVFNNYFVDSVVSITQCFSPNYSEVHQVNTVEQAFSLGLVSESDVNRAITSLKSSRAKDIFGMDVILLKNISESLVKPITKIINLSISQGMFPSAWKSSVIVPIFKSGDPHSSSNYRPISILPIVSKIAEKLIATQITNYLNNSSFALHPLQFGFRANYSSEMANCYFTEKVKSLLDKGGIVGAVFLDFRKAFDTVNHRILMSKLVGFNFSPQTLKWIESYLSGRTQCVNIQNYKSAPLGISTGVPQGSILGPLLFTLYINDLPSMCPNNNIQMYADDTVIFIHGSSVLQVADRLTESLVHLSAWLDQCCLQLNISKTVCMFFSKNGRLSVVPDVFVSGERLQVVSEYKYLGVLIDSKLSFQSQVKKVCNRVRFSLANFRFIRDQMSCEAALIYYHSMIISHITYCLTTWSQASITTLKPLKSLYKQSIKTLDKKSVQYHHCLILKKYNLLSWENLITYVHICLMFKTLHNPTSPLNQFINIRTTAHRTTRGGDRGDCIIPLKKSKFSQSVFSVRAAREWNSIPPTIRRSCTFRSFQSHVRNWLLTNQHCQH
>CR1-42_HM_pol#LINE/L2 1084-4353 No ORF1 in low complexity first 1080 bp.   [Hydra magnipapillata]
MKNKTLCIFCFKTVTDNHKAIYCDCCSSWVHAKCNQIDLLTYNLLSEDSSEWYCFNCISKNMPFGLLTDNELLTTLSCKNPQTASSNFLVSPIHSRNILKELNTISGSAINCKFYDVVDFNKAIKPNSDIYLHLNIASLPYHIDDLCSLISTLNIIPMAIGITESNLYLNDTNITDITINGFNIEHCPTEAKKGGALLYLQSNLNYVVRHDLKIYLPKLLESVFVEIIKPHKTNVLIGCIYRHPSMNQNEFNTTFLTPLLEKLSKEQKLIFLMGDFNVDLLSYSESNPTSNYLDTLCSYSFNPSIILPTRITTKSQTLIDNIFMNFYSSDHLSGNLTISISDHTAQFVCVPGTSNQPNKVKISRCLKRCLKKFDPNKFIIEISKINWELIIKKDDNINESINNFLKSFNRVLDQCAPYKTLTKNQIKLKSKPWISKGLLKSISVKNKLYKKFVRCKNINTKNELFTKFKFYRNKISNLLKSSKKSYYITYFNNNINNIKNTWKGIKDIINIKGSLHKTPTQLNLNENIITDHATVSNIFNNYFVSIREKLLNNIMPSEYTYSDFLNFPNANSFFIDPVSEDEVSSLISNTLKNDKSYGPNSIPTFFLKLTSHIISKPLSIMINNSFKNGKFPDVFKVAQVIPIYKAGSLLDFSNYRPISLLSNLSKLFEKAMHNRLYKFLDKFKCLYQHQYGFRSKHSTTLALIEITEKIRRALDNKHFACGVFVDLQKAFDTVDHSILLTKLEYYGIRGIPLKWFTSYLKNRTQFVSINSTKSDLQNCSNGVPQGSVLGPLLFLLFINDLNTSFKFATAYHFADDTNMLLVDKSLKKINKHINHDLGNLVQWLRSNKLSLNSNKTELIIFKSNLAPIKKQLNFRLSGQKIYPLDSIKYLGIKIDSNLSFQGHLNDLAMKLSRSNGMLAKVRHYVNLETLLNIYHAIFGSHLRYACQVWGQSHKQIILRLSHLQNKALKIIYFQYNNSKSNVLYLISKILKISDLVVFLNCLFVWNYHHKNLPLSFNNFFSITNCHYPLRSISSLNLVIPKHQSAKYGNKSIKYQCISSWNKLPPDLKSLNSISEFKIKLFNYLLKKYN
>CR1-45_HM_gag#LINE/L2 71-763   [Hydra magnipapillata]
MATKNFTSAQLKDILEIHENTIMKMFNDRIEKLENKLNSVIDENKELKKELGELNKAVEFVSNNYDKIVADHQTSKTSLINEYANSNMINKLAELEDRSRRNNLRFCGIEEVENESWEDSENKVREFLNNKLQLHGKFEIERAHRVGKKLPENNKKNRSIVVRFLNYKDKATILRKYTTMKLWTQKVYINEDYSDHTMELRKKLLNEAKDLRAKGKYAKVIYNKLITRDL
>CR1-45_HM_pol#LINE/L2 818-3893   [Hydra magnipapillata]
MDSNETLNFESSFYNFFQTNDFLLDDESDPDLNYFSNSGALQNKCNYFYTHEIKGFLDQNNINTIHINIRSLKKNFEIFRNFIEETCNLFNIICLTETWCSSDDVNFFTNFELPGFNVISLARKTNKRGGGVLIYVKNNLRYFTRHDMSISDADKEVLTIEILTNKIKNKILSCCYRPPSGEIKNFNSFLCNDVIKKSNHENKFIYLVGDLNLDCFQYHVNNNIKRFYNGIFENGAIPLISKPTRITQSSASLIDNILTTDVFNESLKKGIIKNDISDHFPIFFSINIDNKLVPNEKRVFKKRFFTNENLKSFKEQLSLIDWSIINTSDDINLVYNSFFKSFYDIYETNFPEVNLNLKAKSIKSPWITKGLRKSSKIKQKLYINYLKSKTNENKIIYKNYAKLFESLKKKQKKNYYLNLLNIYKLNFKRTWFIIREITGSKKCTSHSLPNTVKHNNEFLYDKRQITEEFNKYFVSVGPNLAKRIPIANGLMNDLRFPLNSYLNSFELSFEEFENAFKMLKSNKAVGPDGINGNIIISSFDVLKDILFKIFSISIKQGIFPHALKLAKVIPILKSGDIENISNYRPISLLSVFSKVLERILYNKIYSHLTLNNLLYSNQYGFQKNNSTEHAILQFTRNISDSFENSQFTLGVFIDLAKAFDTIDHEILFKKLEWYGITGKILIWLKSYLNNRKQFVYANDNVSSSLLNISCGVPQGSILGPLLFLIYINDLPKASNLMTIMFADDSNLFLSHNNIFTLFSNMNIELVKISEWFRLNKLSLNIDKTKWILFHPYGKKHQLPSNLPFLFIDNIVINRVLVTRFLGVYIDENLTWKCHIANLCSKISKSIGILYKIRNVLDKNTLIQLYYSLIHCHINYANIAWGSTYKSKLKPLYRQQKHVARLINFKDRFAHAKPLLYDMKALNIYELNVFNILCFMYKCKTNLSPVSFRNLYLQRDRNKYILRNDNLIRQPFSQTNFGKFFISFRGPFLWNSIVLNTSKDFSQECNFDSFKQNLKKLIFSTENILIYF
>CR1-48_HM_pol#LINE/L2 775-4176 via tfasty with CR1-42_HM_pol, 3 frameshifts and 1 stopcodon. No obvious gag upstream.  [Hydra magnipapillata]
MALNCHLCKKLISQSCRSSQCNICLFWSHTKCDRLNDTKYSLLQLSRSLRSCLNCIKSVFPFTDVQDNEFKLLFSSDIILKTDDLPLSTNLFPSFHLNKVSNQINNYVSSRVLDSEEEISSSLDIFCKYYDISELCTLNFNKISALSFFHLNISSLQKHFEDLNIILSLINFDFSIIGITETRLKKGTSSIHPILIDNYNIEQTPTESSCGGTLLYLSKKLIYKRRDDLMIYTPNCLESTFVEVIFSKKSNIIVGCIYRHPCMDINIFNNIMSVLLQKISAENKSVFLLGDYNIDLMQSNNDIATSDFLNLFSFYNIRPFITLPTRITDHSATIIDNIFSSLIANEIVSGNLTTSVSDHLPQFCICPNFNKLFIPRRHNLYSRSFKNFNKENFKSDLSKIDWDDITKSNDTNTCFQTFITETTLILDRYAPLKKISIKNFKRRFKPWITKGIIKSIQVRNLFQKKMLRSKDLINKKKFESIFKRYKYIIVTLIKLSKKNHFKNFFSENVKNLRELWKGINTLINVKNLNKSSPNCLQENDTYITDPTLISESFNTFFTNVAHKLKSNIHSSYINYQKYLKHPNLHSLLLSPTNISEISSLISKLNPKTSLGPNSIPTNILIDFNYDFSNILSKLFNTSFINGKFPDILKLSCVIPIFKNGSKLSCTNYRPISLLSNISKLLEKTMYSRVYSFLNSFNCLNDFQFGFRSKHSTCHALISITEKIRKALDTGHFVCGVFIDLQKAFDTVDHSILISKLKHYGIRGIVNDWFRSYLSDRKQFVSINGFNSSYKSVLCGVPQGSVLGPLLFLIYVNDLINSVHFSSVHLFADDTNLLHINKSYHSLCKNVNSDLKGIVHWLNANLICLNTEKTELIFFSSPRKNNFFKNVEIKIKINNKRLYPSRVIKYLGVLIDCNLSWNFHIDDxARKSRANGMLSIIRHYVNKVTLRSIYYALFSSHLSYCCQVWGQVGNYRINKLLSSQRQSIRLINFQPIKSDTSKSFKKLFIPTFPALVKYANLLFVFDSLNKNIPSPITNLFTESRLLHSYSTRNIHNGKLNVPSFKTQKYGKRSIVYQCVCEWNRSLACILNESKKIYPKIPLLHLKQYQFKKILKNIFILTFWHYYPYDLNIXLVFFS
>CR1-52_HM_gag#LINE/L2 60-800   [Hydra magnipapillata]
MEVMMKNIEKLISSKLDEQKKSILXETAILLKNQEKIFTDILSANLKIITDRLDKLENEFNKNKSKLVIXEKDISDLKESINFQEETFLNKISQTNSLLNSEISNLKNKFIYLEKRSRQNNLRIDGLTELPAENWNDCANELKNIFRNKLEISEDIIIERAYRIGKVKEDKSPRTMIIKLLDFKNKNKILTSAKKLKGTGIFINEDYSNETMEIRKKLWEEVKRLRKEGKYAIIKYDKIFVREFRK
>CR1-52_HM_pol#LINE/L2 881-3967   [Hydra magnipapillata]
MAXETIEFETYYSDYFKTANNILHNDFYHADKKIFNEKCCNTEYFEIETFKTQFKQSNEDFTVIHINIRSINSNIDKLKNFLLECNYSFSMICLTETWCTDNFSQENSNFQITNYNMISFERKILKRGGGILVYIRNDLEKKIRNDLSFSDADNEALTIEIINKNKKNILVTTCYRPPNGNIIKFSNYLNQIFIKNNNEKKYIFCIGDLNIDCLKYNENTNIKIFFDNLFQLGIFSLINKPTRVTSTSITAIDNILTNSFLDISLKTGIFKIDISDHFPIFFSLTQNSASLNNSKIKTYKRKINKSSIHEFKETLSKTNWSNVYLQCDRGLTNSAYNLFIDTFLEHYNKHFPIIEKEIKVKYLXCPWITSGIKKSSKKKQKLYNKYLKNRNEKNLTVYKQYKNLFEKIKKKSKKMYFSKQLQKHNGSIKKTWEIMNEVIGKTKTKSEILPSRIEEDGLEYTDKKTISDKFNKFFVNIGPXLASKINNSNNSFNNYFTDHTSSFTESDLKSEEFEEATKSIRKNKAPGIDDISSNVVYDILYILKDPLLKVFKSSIRTGVVPNKLKIAKILPIFKTGDTALLTNYRPISILPVFSKLLERIMYNRLYKYLTANKILSECQYGFQTNHSTEHATLDLMDNIRSSFDKGKFVLGVFIDLTKAFDTVNHKILLEKMRKYGIKNQTIKWFTNYLNNRQQCVIIDGITNTKLLKIKCGVPQGSILAPLLFLIYINDLPKASTNLDCIMFADDTNLFYSSTSINDLFDKVNIELQKLKTWFSANMLSLNAQKTKYILFHSKKQKNKLPSILPSLSIEHKKIERTQTIKFLGVIIDENVSWTAHINAINTKISKSIGILFKARPFLSQKNLKLLYFSFIHSYLTYANIAWGSTHKTKLMSLYRRQKHASRIIHHKNKLTHAKPLLKEMKALNIYQINIYANILFMLKYKLGLVPNRFTENFFQSNINKFNTRATGNFIVPRKRQKNSQFSISYRGPYLYNKLIPNYTSISLADNITSLKSKLKNHVLNTDNYLEMF
>CR1-54_HM_gag#LINE/L2 117-887   [Hydra magnipapillata]
MSITLVEVKKLITEMFMKFKIETEEMLKQQENTFINIVSSNTKILNDRLDRVELNILQNSTKIASIAKEVEEIKESLNFHEDLFNKKIKTAIDCLAKENLANFKIQNNNNELIRINNKLREIEDRSRRNNLRIDGVLENDNESWAECEKKVKEIFNNILGVKNVNIERAHRIGKVVHNKHRTIILKLLDFKDKTEILNNSSKLKGKNIFIYEDYCKETNIIRKTLHEKMKIERQAGKYAYISYDKLIVRDWNSNKK
>CR1-56_HM_gag#LINE/L2 72-812   [Hydra magnipapillata]
MEINVKNIEKIITSKLEEQKRSILAETERLLKDHEKNFTSIISSNFKIITARLDKMDAEINNNKLNIRKIENEVNEIKVSLNFQEEKSRDEFTLIKTKYENEIMMLKKKSIDLENRSRRNNLRIDGVKETPEENWSDCEKVVKDIFKTKLNILGEVVVERAHRVGTVKDRKTPRSIVLKLLNYQDKNKILSSVNKLKGSGIYINEDYAKETMLERKKLWEEVKQLRNEGKFAVIKFDKIYCRDFRK
>CR1-56_HM_pol#LINE/L2 861-3944 CR1-57_HM_pol 90% similar and broken.  [Hydra magnipapillata]
MTNLTIDFEKLHFNVFKSANVLLNDFSDADLHFFNEKNFSSSFFEIKTFKNELKTLKSNFTVIHINIRSINNNMDKLKYFLIECDYLFSMICITETWCSDESCRINSSLEIPKYKLLSFERKTNKRGGGIITYIRNDQITKIREDLSTSDADSEVFTIEITSNKSKNILVSTCYRPPEGDLLKFSNHLKQIFIKNNNEQKKIFCIGDINIDCLQYEKNANIKLFFDEMLQYYIFPIINKPTRVTPTSISAIDNILTNSIFDTSLKAGIIKTDISDHFPVFFSLTQDIKSINSCKIKIYKRKINKFAIQQFKDSLSAEQWDKVYQECNLGNTNSAYNYFEKIFLKNYNMHFPIKEKLIKEKYLKCPWITKGIKKSSKKKQKLYIKYLKNRSEANLNVYKQYKNLFEKIKKNSKKNFYSNKIKNSNGNIKKTWDIIKEIIGTKHCKSNSLPAQIVIDNNEYNDYNVISEKFNSFFVNIGPNLASKIHCPNNSFETYLTSVNSELIFKELKIDELENAINSIKINKSPGVDDISSNIVANVSSQIRKPIFEIFKSSIKTGTVPDKLKVAKIIPIFKTGETFQINNYRPISILPIFSKILERIIYNRLYEYLIQNKLLDKKQFGFQSQHSTEHAILDIVNSISDSFNKKQFVLGTFIDLSKAFDTINHDILLKKMEKYGIKNTTLDWFKSYLCNRQQCVISNDNKYSNLLEIKCGVPQGSILGPLLFLIYINDLPQSLKKLDAVMFADDTNLFYSSASIENLFESVNDDLENLNTWFKVNKLSLNTEKTKYILFHSNHQKNNIPRMLPLLKIDNINIERTKTVKFLGIIIDETISWKAHINTINTKISKSIGILYKVKPLLSQKNLKSLYFSYIQSYLTYANIAWGSTNKSKLNSLYVHQKHASRLIYNKNKFTHADPLLKNLNALNVYQINIYQNILFMLKYMLGLVPSHFTNNFFQTYANRYSTRGTGNFTLPIKKTKFSRFSIAYRGPYLYNKIISQNIELTKLDNLTILKKKLKDLIINKTNFIDMY
>CR1-57_HM_gag#LINE/L2 45-797   [Hydra magnipapillata]
MEITMKNIEILISNKLDEHRKSILKETEKLLKEQEKTFTLIVSGNLKIISDKLNVMEKEILENKSKIKNIEKDLNDVKDSLNFQEEKTLEKLKKIKKYFDNEINVLYTRTTDLENRSRRNNLRIDGLVEKPGESWSECEIAVKEIFNKNLKISSEVVIERAHRIGPINNKKPRTIVLKLLNFQDKNKILNAVKNLKGTGVYINEDFSQETIEQRRKLWEEVKRLRSEGKYAILKYNKIFSRDFKK
>CR1-61_HM_gag#LINE/L2 70-774   [Hydra magnipapillata]
MAKNFTPAQLKEILENHENTMMKIFNDRIEKMEIKFNNLKDENFTLKKELSEVQKAVEFISKSYDKIIIELTELKKTESKKSPDESNIENGTNNIKEKIAELEDRSRRNNLRFIGIKDKANETWEESEQKIKDFLNTKLNIQEKILIDRAHRVGKENGKNRSIIVRFQNYKDKALVLNKYTTMKLWNERLYVNEDFSDFTMDLRRKLFKEAKELRAKGKFAKVVYNKLITRDLL
>CR1-61_HM_pol#LINE/L2 817-3894   [Hydra magnipapillata]
MDDYESITFNFHDKYLKSNFNSDPDVNFFNDVNTCCSYFYPNELKEFLNKNGTENQKIRILHINIRSLNTNFEKFCDFLDETENIFNIICLTETWISSNDFKNNSIFHLPGFETILLERQTNKRGGGVLIYVKEHIAHNIRNDMCVSDGDKEIVTIEILNNKKNNILLSCCYRPPDGASENLSFFLQQNIIHKGSKENKITFIIGDFNMNCLIYNKDKKIKSFYDEILMAGAVPLINRPTRITKTSTTLIDNIFTTDIYNRKLKKGIIKTDISDHFPIFLTIHTVSSNNPERQNIIKKRVFNESNIKSFQYQLSLLHWKHINFNEDANTIYNKFFDTFFSIYDANFPLCEKITKIKTLNSPWITKGLRKSSKIKQKLYIKYLKTKSNENQQKYKNYQHLFEKIRKKLKKNYYSNLISKFKNDSKNTWRTLKEITGKQKTNSNSLPKVIKINKTNIYEPNEIANEFNKYFIDIGTKLANKIPITEKNFSDFLEPINNSLFIDNLHSDLSFDEFERAYKSLKRNKATGADEINGNIVIDCFENLKCILYKVFRASIQQGVFPDQLKIAKVTPIYKNGKKSNISNYRPISVLSTFSKILERIIYNRTYNYLNLNKLLYKNQFGFKKNCSTEQAITQFIREISDSFGRSQYTLGIFIDLSKAFDTVDHKILLKKLKFYGINGKLIKWYQSYLENRKQFVFYGDYFQNEKLIDIKCGVPQGSILGPLLFLVYINDLNKASNLMSINFADDTNLFLSNSSIYELFSNMNNELNQISNWFKCNKLTLNIDKTKWILFHSLAKKRFLPNKLPKLFIDKIEIKKESVTRFLGIYIDENITWKYHIDYISTKLAKSIGILYKVRYYLSKQNLIQLYYSFIHSYINYANIVWGSTSKSKLRSLYHRQKHAMRLICFENRFSHSNILFKNVKALNVYELNVYNILCFMFRCKSERPLSNFKDLFTYKAINKYALRNNNLLIEPFCQTKFNQFCINYRAPYLWNKIVVPNFDLSISFSVFKTKLKNYILSTGNIYKYF
>CR1-63_HM_gag#LINE/L2 72-905   [Hydra magnipapillata]
MDFTMASIELMVNVLLDKQKNTIIEETQKLLKEQEKSFTAITTANIKIITGRFDKLESDILNNSAKIATITNALETSNQKILLLETELNEIKKFIHVNDEIVASKFEIVKEKTKKVSSQVKDKSTVNKINNKLREIEDRSRRNNLRINGIKESEHETWEESELKVLKLFEETLEIKDVKIERAHRTGPRGENKNRTIILKLLNYKDKTDIMKRSVKLKGMNIYINEDFCFETVQIRKDLKNEMFKQRELGKYAFISYDKLIVREWSEKKIDAKDCQV
>CR1-63_HM_pol#LINE/L2 1056-4135 via tfasty with CR1-29_HM_pol, 2 frameshifts.  [Hydra magnipapillata]
MNSKLLNNFELNSFNFFQTNKFVINKDTDPGSIYFSEAGALLNNCSYFYNNELKEFLERDHLNVIHFNIRSLKKNFESFRNNIEEALNIFNIICVTETWCSSDEAKSNSNLHLPGFYLVPLARKTKKRGGGVLFYVSEEMRFINRPDMSISDADKEVLTIEILAKKNKNIIISCCYRPPSGEINSFKSFLITDIIKKNYNEKKLNYIIGDINLNAFNYHVNYKINGFYNDLFENGAIPLINKPTRVTSNSASLIDNIMTTDTFNESIKKGLIKSDVSDHFPIFFSINIDIELVPITNQVFFKRCFSEANLMSFNEQLSLLHWKHINFSSEANLVYNSFFKTFFEVYDANFPQYEVSLTKKSIKSPWITKELRKSSKVKQKLYIKYLKSKTDKNKEIYKTYVKHFECQRKNLKKKYYSNLLEKFKNNSKRTWQILNEITGNYKSKTSNLPKVIKNNDVFLNNPKDIANQINNYFITVGPNLAKNIPIITNSTNYFTLPIISVLNNFEISMKEFECAYKMLKTNKAKGPDGINSNILIASYENIKTILFQVFSCLIKQGIFPDQLKIAKVSPIFKGGELSNITNYRPISVLSGFSKVFERILYNKIYDHLSKNKILNTSQYGFKNNNSTEHAILHLTRNIADSFEKSQFTLGVFIDLSKAFDTIDHEILIQKLKNYGISGNFLNLLKSYLSNRKQFVQIDVSSSTNLLDITCGVPQGSILGPLLFLVYVNDLHNASNLTTVMFADDTNLFLSSSDIVTLFNDINIELVKISNWFKTNKLSINLEKTQWTLFHPKSKKKLLPNDMPQIYIDNVQIKQSKVIHFLGVFIDENLTWKNHIETLCNKVSKNIGVLYKARNFVNRHALIQLYYSLIQCHVNYANIAWGSANNSQLEPLYRQQKHLARLINFKDRYTHAKPLLIDMNILNIYQLNVFNVLCFMYKCKINLTPIFFQNLYAIKPRNKYELRNNNLIHQHYSHTNFGRSLISYRGAFLWNQIVLKNFDFSKNCSFLTFKNKLKKVILTIDNIFEFF
>CR1-65_HM_gag#LINE/L2 168-932   [Hydra magnipapillata]
MATLSEIKKMLKEMFMDFKKEMQNQTEALLKQQEKNVLDIISGNTKIINKRLDKIENILNENISKIKILEKDVADVKLSLNFQENLIDQKVAACHNSFEKELTCLQLLKNQQRNVEDRTRRDNLRIDGLPENDKETWSQTEEKVKIFLEKNLGLLGIDIERAHRTGIKKDNRTRSIVMKLKSYKDKMKILKETNRLKGSNIYVNEDFSKMTVDIRKKLFAEVKERRLKGENLAVRYDKIIHLKNAVKYSINVPK
>CR1-65_HM_pol#LINE/L2 1001-4051 via tfasty with CR1-18_HM_pol, 2 frameshifts.  [Hydra magnipapillata]
MAETINYNFFKTFSGENVRHFSKNIDPDVNILDNYSLETNYFKVHEVTSILNKSLHYISLLNINIRSMSKNFENLKLMLNNISIKFSIICLTETWCQSEDMSNSNLHLTDYKSVHQPRKNGIGGGVCIFIHNSLTYKKVDNLSVNNSNCESLTIEIINQKEKNSFITVLYRPPNGSYNQFENDLRRILTQTSKKHLYLLGDFNLNLINLNTDNHVKNFINTLSQFSAYPMINKPTRVTRKTSSIIDNIITNNYSNSTINSGIIKTDISDHFPVFLTTNTKCCINKKPITVYIRHVNKGSIAIFRQLLREINWELLNDCNDTCSAYDFFIRVFTRQYEKAFPKVQKTIKSKSVHSPWMTKGLLRSSKKKQKKLYEKYLKNKNYENETKYKKYKNYFEKIKKQSKKNFYSGLLQKSFGNAKKTWTIIKEITGKTKITSSNFPNRLKTDKGEIFNKKTIAERLNNFFINVGKNLAKEISPSSKTFQSFLKKSDFIMDNSELSIEELRSAFDMLQKNKSAGLDEINTNVLKSVFDIIELPLFIIFKLSLKNGDFPDQLKLAKIIPIYKNGDDSLESNYRPISILSCFSKVLERIMYNRIYNFIDKNNILYPKQFGFRRNHCTEHAVMDLASNILKGFDGNNYTLGVFVDLSKAFDTVDHEILLYKLKNYGIQNTNIKWLESYLQNRKQCVTYDLTYTQLEVISCGVPQGSILGPLLFLLYINDIHLSSKFLNFVLFADDTNIFFSGSNLKFVFSTVNTELINLNEWFKANKLSVNIDKTKYILFTKPSKTDNIPLKLPDLFINNIKVKRVHSMKILGIIFDDHLNWKNHIQFVENNVSKALGILFKTKHLLNIMCLKSLYFSFIHSHISYCNIAWASNYSSSLKKINTKQKQASRLILNAGRYACAEPLLKKINVLNIYKLNIYQNLLFMFKIYNNMLPTYFQPHFTLINHKYSTRYSISNFLIPTTSLRKTDFSITCRGPRLWNYFLNRDMKNMTSIKLFKRAVKLYLLDLNNKNILLYF
>CR1-66_HM_gag#LINE/L2 85-861   [Hydra magnipapillata]
MALTLQEIKKMFKEMFCEFKKEMFNEFKKETEAMFKKHEQTVLDIISGNLKILNERLDKLETNANENVIKIKKIEKEIEEISDSINFNESIIDKKIEYNSKQLEKELIENEILKEKHRKLEDRSRRNNLRIDGLYEDEKETWGQTEEKVHLFFKQKLGVEDIEIERAHRTGQKKNGKPRTIVLNLQRYKDKVKILKELHRIKGTNIFVNEDFSLETVAIRKKLFTDVKQRRLNGENVAVRYDKIICFKNSFYDNNRKK
>CR1-66_HM_pol#LINE/L2 912-4005 via tfasty with CR1-27_HM_pol, 1 frameshift.  [Hydra magnipapillata]
MAALNNFESLAFNFFEKEFFSQDENSDPDNNFYCETFSDCSYIFPSELEEYLFKNVIDKNSNQIRILHLNIRSLNSNFEKLLNLIEETKNLFNIICLTETWITSKDLNSHFQIPHFNIISLERQINKRGGGVLIYAHETLRLVFRGDLSISDSDKEVLTIEIESNQTKNLLISCCYRPPAGMSENLSMFLHNVIKKGDTEKKKNILLGDFNMNCFLYNNDYKVKSFYDTFFETGSIPLINRPTRVTINSATLIDNIISTDIFNKGIKKGILKTDITDHFPIFVTIDTYTAKNIDNKKVLKKRIINQNNLNLFKDQLSLLHWNNININNNANDIYETFFKTFYSVYDANFPVVEIIAKPKSLNSPWITKGFKKSSKIKQKLYINFLKTKTTANEKIYKNYKYLFEKIRKNLKKKYYSELLNKFKYNTKRIWEIEMKEIIGKQKSCCFGFLPQMIKIENTSIFEPNAISHEFNKFFTEIGPKLSNKIPITRTLFSDFLLSLEKCICSDELSSDLSIEELEKALKSIKKNKSCGPDEIDGNVIIDCFKQLKDVLFKVFNASIKQGIFPEQLKIAKVTPIYKDGDQSQITNYRPISVLSVFSKILERIMYNRIYKHFDKNNLLYVNQFGFKKDSSTEHAIIQLVNEISKSFEQSKYTLGIFIDLSKAFDTVDHHILLKKLKYYGVNNQALRWFRSYLTNRKQFVVGNDNYHNNCLSITCGVPQGSILGPLLFLIYINDLNKATNLMSIMFADDTNLFISKSDISELFATVNKELKLLSHWFKSNKLTLNTDKTKWTLFHSNRKKKFLPLNLPPIFIDEIEIKRDSVIKFLGVYLDENINWNQHINYICTKVSKNIGVLYKARTYLNKKHLRQLYFSFIHCYINYANIAWGSTEKSKLLRLYRCQKRAIRIINFADRFSHCKPYFIEMKILNVFELNVLKILCFVYMWKNNLSPPVFKDFFSLKPSNKYTLKRKNFFNEPFCQTNFNQFCLAYRAPHLWNKLVLPNVDFDRPNSFCLFKNKIKNLIFSLDNILEYY
>CR1-68_HM_gag#LINE/L2 187-975   [Hydra magnipapillata]
MEFDYECLEEPNWPTIPSASAEVTKNMHKWCGKISYIVSDLLKRLKILEDEKINNLTATTNKPTTIFTYAQATSIQKNQLKPKETEVVMMAKITNEFNNKKRIENNIVISGVADHTTLDKQVNEENDKQTIETILKAIKPDFSITNAKRIIRLTKNAKRPEGPPDLILVELENKETQNFIIKNSKKLKDSINFKNIFINKDKTANERLFESELRKVRNTRNAALAQEVEGTNGRQRYNVHNGKKYYWGIRSGELKWIEIKST
>CR1-68_HM_pol#LINE/L2 900-3862   [Hydra magnipapillata]
MEKNIIGVYDQVNSNGSKLNQHNLHIKIKRTSALNLGIQNVQSAMKKSAIIHDIVQNHSLDIFILTETWIKSDDPTAIKEDMAPPGFKTIQYCRSDHRGGGVAIIYRDNLNIKPLSLSSTCLSYERTSAKLNLANTIYNIVAIYRSNPIIPTNIFFFELSELLEELQTLSGEILLCGDFNCPGTTPITCNSRLNEILETYNMIQRVQSPTRISSTTGIANLLDLVINRHDDISLKSIQVTDEGISDHYMIRVELYHQPSNTKTVWFSKRNFRKLNLSCFIKELQVMPCCLSPENNVDDYAEQIRSSITTVLDHLAPIRKYSMRIGKHDDQWLSSDAKNKKIRRRKLERCYRKTGSLSDKKLYRTACREAAAAIHKSRCSHYKAKLNSAYGDQKETWNIAKKLLHSNSSKTNNTIPEAKCDIISQYFIRKLEIIKNTIQERLAKTPISKFISELSPPVDILTTFGTVTPKDVSKIIKTLKPKTSPLDIIPTNILKSCSEIFSPIIAHLADLSFKSGIFPTSYKVAQITPIPKKSGLAEFDLTNLRPISNLNTISKILEKLALSRLHPHVTSSVNFNPLQSGFRSYHSTETALLKICNDILLNIDDGLTTILLSLDISSAFDTIDHSLLITRIKNDFGVTDIALKWLTSYLHSRKSFVSIGSSNSRLIASSTGVPQGSVLGPFLFSMFVSPIYRIIAKFGTNHHQYADDTQLYTFLSPGKDSINKITECANAVTTWFLENGLLLNPNKTEAILFGSRKQTSKYKNDLNIAFSGTTITTINSVKILGVILDSKLSMDKHINNIIKSCNYHIRALRHIRPCLTKEAANIIACGIVNSQLDYCNSILSGTYQKNIKKLQRIQNNLSRIVFHSPFHLKSEILLKSLHWLPIHQRIIYKISVITYKILLSKSPAYLFELLEVRTSKQNTRSLDSCQLTRRQQKTSLGSKSFCMTAPRIWNGLSLNTRNSTSIETFKKRLKYELFMNSFSDS
>CR1-70_HM_gag#LINE/L2 62-781   [Hydra magnipapillata]
MAKSLTIVKEFLECHESTLLKTFGERFDKLEEKFYNEIEKLKNENALLKREVAEVTKAMNFQNEYYEQIVKESNDLKGKLNNYNKDNENLKCTEIIQDKLAELEDRSRRNNLRFDGFDEREEETWEDSESKVKEFLKEKLGIKNNIAIERAHRTGKKHVSGKRRRTIVVKFLNYKDREIVLNEYKKRKLWNEKIYLNEDYSNRTIEKRRFLFTKAKELRAEGKFAKVIYTKLVTRASEV
>CR1-70_HM_pol#LINE/L2 782-3944 via tfasty with CR1-61_HM_pol, 1 frameshift.  [Hydra magnipapillata]
EILLNLIQHTKNDNNKKYKMDDYESLIFNFRNKYIGSDENTDPDINYFNDLKVDCFYHYASELKEFLSKNGDENKKIRIVHINIRSMNKNFENLRHFIEETKNYFDIICLTETWCSQNELNNNSNFHLPNFETILLERQLNKRGGGILIYVKQNIAHNVRNDLCVSDGDKEIVTIEILNNKSEKLKSKSILLSCCYRPPGGASENLSLYLKHNVFHKGNKEKKKNFVIGDLNMDCLRYSENKKIKKFYDEIFVSGAIPLINRPTRITENSTTLIDNILTTNIYNNDIQIGIIKSDISDHFPIFLTINTISTPNINKSQTIRKRIFNKKNLEAFKYQLSLLNWKHINFNEDINAIYNKFFNTFFSVYDANFPVSEITLKPKTLSSPWITKGLKKSSKIKQKLYIKYLKTKSHANLRIYKNYKTLFEKIRKNLKKNYYSNLITKYKNDSKQIWKILKEITGKQKTCSNFLPKMIKINNVCVYEPNEIAKEFNKYFTDIGSRLADRIPSTNISFNDFLTTSNNLLSSHDLFLDLSIEEFERAFKSLKKNKATGADGINGNIIIDCYESLKNILFKVFQTSIQQGVFPDLLKIAKVIPIYKEGEKSNVNNYRPISILPTFSKILEKIIFEKTYNYLVSNNLLYKNQFGFKKNSSTEQAIIQFTREVSNSFAKSQYTLGVFVDLSKAFDTVNHDILLKKLEFYGITGKMIKWYKSYLSNRKQFVYHGEELLPINLQNKTLIEIKCGVPQGSILGPLLFLVYVNDLNKASNLISIMFADDTNLFLSNKDINKLFLDMNKELNQVSNWFKCNKLTLNIEKTKWILFHSSTKKRFLPYDLPKLYIDKVEIKKDSVLKFLGIYLDENMTWKAHIDYISTKVAKSIGILYKARNYLNKNNLKQLYYSFIHSYINYANIAWGSTGKSKLQRLYRHQKHAMRIIYFLNRFSNTKPLFKDMNVLNVYELNLYNILCFTFCCMNNPLFHVFKDLFTFKVKNKYSLRNNNYLKEPFCQTKFNQFCIDYRAPYIWNKIVQPNLDSSISFSVFKNKLKNIIFSTDNILKYF
>CR1-73_HM_gag#LINE/L2 59-826   [Hydra magnipapillata]
KKDKSKMSVTLVEVKKMLKEMFLEYRKEMETMLKQQQQIFIEILSANTKIINERLDKVEENSKESANKIKIIVKDIEDIKLSLNFHDEVFDKKIATIHKQNNDRVEKENITTQNINEKLRKFEDRSRRNNLRIDGLPESVKETWNETEDKVKLFLVNKLGLNGIEVERAHRTGARKEGSSRTVIMKLLRYNDKTKILKESYRLKGTNIYLNEDFSHETVNIRKRLLAEVKERRDNGENVGLRYDKIIKLNNIKKK
>CR1-73_HM_pol#LINE/L2 897-3971   [Hydra magnipapillata]
AVKFLIMTMTETKYFEIFDKENTLLLNNNNDPDKNFFENDSFKSNYYSIEELSCFINASQNTFSALTLNIRSMSKNFENFKEMLKDISHEFTVICLLETWCKDENTINSNFQLKGYKALHQTRSRGTGGGICFYIHNTIQFKKVESLSLLNANCELFTVELTNQGKANAYITGLYRPPDGNIKSFKKHIIQYLELAKNKHLYIMGDTNLDLLKIKTNNNVKRFLNNLLQHGVEPLINKPTRVTLRTATLIDNIFTNTTIKCNIQSGIIKSDISDHFPIFLLLNNLNNKKENKTIITTKRQINEKSITKFRSNLSMENWDQVVNCKDTNIAYDIFKHTFTTLYEKAFPKLEQLTKLKNLKSPWMTKGLIKSSKKKKKLYEKFLKKKTFKNEKIYKQYKNLFEKLKKHSKKNYYCNLLENYCGNTKKTWGVIKEVTGKKKDATKVFPQYLKTDENDTVANKAIDIAEKFNNYFIKIGEKLANKITRGKKCYKLYLEKKASVMNELEITPDELKNAFNTLQENKSPGLDDISVNVVKNVYDIIEYPLLHICNLSLKNGVFPDQLKLAKVVPIFKSGDDSIASNYRPISILPCISKILERIMHNRLNNYLVNHHLLNNNQYGFQKHHSTEHAVAKLVNEILNGFDNNKYTLGVFLDLSKAFDTVDHKILLYKLYNYGIRNNNLKWFRSYLNNRKQALSYNNTVTRLEDITCGVPQGSILGPLLFLVYINDIYLSSNILNFVLFADDTQVFFSHTNISLLFNTVNQELENLNEWFKANKLSLNVEKSKYILFTKLSKSETLPLKLPDLLIDKTKLKREYSIKFLGVILNEHLSWSNHIKVIENKISKIIGIMYKTKHLLNTNCLKNIYFAFIHSYISYCNIIWASTYPSKLNMIYKIQKRAIRLILNANKYASAKPLLREIGVPNVYEINILNILIFMFKFKNGMLPSIFQTYFFSLNHKYETKYSTNNFIIPKTLSKQADFSISCRGPRLWNLLLTNNIKTLNSTQHFKRATKQHLFGFDTKQLLSYY
>CR1-74_HM_gag#LINE/L2 24-825   [Hydra magnipapillata]
MAVTLSEIAKLFEGYKKEFELMLKQQEKVFIDIISGNLKIFNGRLEKVEKDIEELKHSLNYHEELIDEKVKKANVFSKEDNSEITRIQKKLREIEDRSRRNNLRVDGINENEGESWEESELKVKKVFEELLSVKNVQIERAHRTGKKESNKPRTIVIKLLDFKDKVAILSKSSNLKGKNIYINEDFCSETTQIRKGLREKMKIERAAGKFAFISYDKLIIRDWVAKKSKNSSS
>CR1-74_HM_pol#LINE/L2 826-3988 via tfasty with CR1-5_HM_pol, 1 frameshift.  [Hydra magnipapillata]
YFLLINGILFLLLLILNLTVFKMEENFVIKFSDENDILGDYDTDSNFLNHKMLESKYYSVSECSQHLKKNKSTFSILNINVRSLNKNIENLKILLNELKHDFKIICLTETWCKSGETNYEFDLVNYASIHQPREFNAGGGVSIFIHDSLNYILRNDLCVNETDCESLCIEIVNKTEKNIIINNIYRPPSGNMKKFKTHLKTFLNKIKNSRKHIYLVGDFNINLINYASNNNAKNFINTLLENNFIPTINKSTRVTKKSSTLLDNIITNSFYNSPLFTGIIQTDLSDHFPTFLATNNILINNIATKSTIFRRQINENSLKHFKCCLKNNVDWNLILQSSDANNAYNLFLGQFCKQYEIAFPEKEIIINTKSLQNPWMSIGLLKSSKKKEKLYIKYLKKKIxKNKNFYKYIKYLKKKSYKNEITYKNYKNIFEKIKRYSKKLYYAQLLKKHNGNTKKVWNVIKDLIGKNNYKKNTLPKNLLINGKLVYDKSIIAEELNNYFVNIGPKLAAKIPSNSTPFDSYLKTYDKLMDETSLKLSELSAAFSSLKSKKSEGFDKISIDIVKSVFDIIEPSLFHVFDLSFKTGIVPDKLKVARITPIFKSGDKSNILNYRPISILPCFSKLLERIMYNRLYNYLTENDMLYCKQFGFKKKNSTEHAIVELSNQISNAFNNDCFTLGVFIDLSKAFDTVNHNILIKKLENYGVKNKNLLWFKGYLTNRRQFLYYDQNNTIPYSITCGVPQGSILGPLLFLLYINDLYLATNLLDLILFADDSNLFYSHRDIKTLFKIVNEQLCKVNEWFVSNKLSLNVDKTKYILFHKVNKSENIPIKLPNLIINNTYIKRETNVNFLGVKLDENLLWYSHINSIETTLSKNIAMIYKAKPFLNVASLKKLYFAFIHSYLSYCNIVWASTGYTKLKKIYNKQKHACRIVFGACRNTPCEPLLRALGALNVYKLNLHQVLLFMFKTKMGLSPIIFQTYFNKINHKYSTKFSDNNFVLLKYNLKLTFYSIKYRGPYLWKKFPEIVNKNKTTLEQFKNESKQLLLFRDLNLSDFKCFF
>CR1-77_HM_gag#LINE/L2 52-759   [Hydra magnipapillata]
MAKNFSASQLKEILDIHENTMMKIFNEKFERLEKQIDKLNEDNKILKTEVSELKKAVEFISEKYDKIIIEQEGLKADCAKPDRNLEKSLTINLRDKLAEIEDRSRRNNLRISGIEESVDESWDDCESKVRELIKKKLDLQGEFIIERAHRVGKNDKDNTIKKCRTIVVKFLNFKDKSTVLGKYIKTKLWNQRIYVNEDFSERTTELRKKLFTAAKDLRIKGKYAKVVYNKLITRD
>CR1-77_HM_pol#LINE/L2 799-3876 via tfasty with CR1-35_HM_pol, 3 frameshifts and 1 stopcodon.   [Hydra magnipapillata]
MDSNNLNDFELSYNFFRTDEFLFNNQSDPDLNYFCEAHALQSNCSYYYADEIKEFLNCRYFNTFHINIRSISKNFENFYLSMKESLNIFSLICMSETWCNSNNSNLNSSIFLPGFNIISLDRKNGKRGGGLIVYIREYLQYIIRPDMSNSDDDNEVLTVEIQTKKKTKNLIISFCYRPPSGSIENFNLFLNDIxKKSICENKLYYLIGDINLDCYQYHTNYGVKKFYNELFELGAFPIINKPTRITPTSKTLIDNIITTDVFNKSLKKGIIKSDVSDHFPIFFSINIDADIISQQKQTFKKRFFSNDNLKTFKEQLSYLHWKQIDTCADANLVYNTFFKTFYEIYDANFPKQIVNKKAKSLMSPWITKELKKSSKIKQKLYVKYLKTKTEQNKVLYKKYAKEFERQKKKRKKKYYSNLLDRNNLNSKRTWEILRELTGMQKLKTSSLPKTIKINEETSFDQIAIANKLNEYFVSVGPNLAQQIPILKNKLNNYAFPITSFLNSFELSFEEFELSFKKLKSNKSVGYDDIYCNVIIDSYGVIKDILFQIFKCSIKQGIFPDNLKIARVSPIFKGGNSTNVSNYRPISILPVFSKILERILYNIIFNHLSSNNILYQYQYGFKKSNSTEHAILQTTRNIAESFEKSQYTLGVFIDLSKAFDTIDHKILFKKIEYYGIKGNILMILKSYLSNRKQFVYSNTTVSSNLLDITCGVPQGSILGPLLFLIYINDLPKASNLMTVMFADDTNLFLAHNNITTLFQNMNIELTKVSDWFKVNKLSLNVEKTKWILFHQTSKKKLLPPVMPLLFIDKVQIKREQTTNFLGINIDENLSWKYHIDLLCNKVARNIGVMYKARNALNKHSLTQLYFSLIHCHINYANIAWGNTNKSKLLPLYRQQKHVARLINYKDRFAHAKPLLFQMKILNIYQLNIFNILCFMFKCKTNESPVSFHNLYTLKDKNKYNLRNDNQIQQPLSLTNFGKSCISYRGAFLWNKIVLKNFDFSHEWNYLSFKKKLKEIVLSFEDIFLYF
>CR1-78_HM_pol#LINE/L2 915-4181 No obvious gag in AT-rich 5end.  [Hydra magnipapillata]
MLIRNLCKFCNKTVVDSHKGILCNYCSSWLHPKCNYINKHTYSLIEKDSTDWYCSDCINKNLPFCSLSDFELSLTLSSQTIPTNNLKSLKSPPHFKKLFNNINKISNKSINCKYYDILELNKVLNNNCNLYLHLNIASLPYHIDGLRSLISSLTTLPIVIGISESRLNINDSSKTDVNINGFTIEHSPTEAKKGGALLYLRSNLNYFIRSDLIVYSPKYLESIFVEIVNPLKQNIIVGSIYRHPSMNSNEFITDHFNPLLERLSLENKQVVLMGDFNMDLLNYNESKVISSYLDTLCSYSFFPSIIQPTRITATSKTLIDNIFLNFQTPDLISGNLTISISDHMAQFICIPCLSPKKTKEVIFRRTFQNFDNKKFIKDISNADWQIQITNNDNVNESLHYFFKTFNKILDQHAPYKKLTAKQIKLKSKPWITNGILKSISIKNKLYKQYIKAKNHNIKIHIFNKFKWYRNNICNLLKLSKKSYYINFFNNNLXNVKNTWKGIKEIINIKPSSFSSKSINLKFNGNTISDSKAVSNIFNNYFVNTQQTLLTKIVSPKCNFSDYLNNPNINSFFIDPVTENEVSNLIKSLQSKKSLGINSIPTFLLKLVSHIISKPLCTMINSSFENGLFPDVFKIAKVIPLYKKGSRTDHTNYRPISLLSNISKIFEKAMHNRLYNFLDKYQCLYKHQYGFRSKHSTTHALIEITEVIRKALDDKLFACGVFVDLQKAFDTVDHSILLSKLEYYGIRGISLQWFTSYLYNRFQFVSINGNTSSLVKCTTGVPQGSVLGPLLFLVFINDLNLSLKYTTSYHFADDTNLLLINKSLKKINKYINHDLSNLIQWLRSNKLSLNTSKTEIIIFKSKQSKISKHLNFRLSGQKINPVMYLKYLGIKIDSNLTFSQHLKDLSIKLCRSNGMLAKIRHYVNLETLINIYHAIFGSHLRYACQVWGQIRTQEILRLSNLQNKALKIIYFQHYQSNSDHLYFLSKILKIDDLVQLLNCHFVFNYKQKCLPSTFTNFFTVRESCRYHLRSANSYNLHVPNHSSVKYGLKSIKYQSVKSWNSLPSPLKSIDSITNFKNCLFNYFLARYYT
>CR1-79_HM_gag#LINE/L2 47-767 via tfasty with CR1-52_HM_gag, 1 frameshift.   [Hydra magnipapillata]
MEVTMKNIERLITQKKYILKETDKLLKNQEATFTNIISSNLKIITDRLDKLESEINTNKSKTSTLEKNFRDIKETFNFQEENFTNKLAQMSQKCNDEISILKKKTIDLENRSRRNNLRIDGVSESNSETWNDCVSIVKNIFKNQLGIAEDIVVERAHRVGQVKEDKPRTIILKLLNFHEKSKILSLAKKLKGSGVFINEDYANETLEKRKKLWEEIKRHRKEGKFAIIKYDKIFVREFRK
>CR1-79_HM_pol#LINE/L2 821-3907   [Hydra magnipapillata]
MAYKTIDFETKQLNFFETDNNILLNDFYDADKQVFKELDFNLQYYDTETFKTLLKTYIKNFTVIHINIRSLSLNIDKLKHFLLESNFLFNMICLTESWCDDESAQKNSNFQIPNYKIISSERKTLKRGGGILVYIRNDHDIKIRKDLSISNSDSEVLTIEIIIKNTKNVVVSTCYRPPDGDVIQFSNYMQQILIKSNNEQKRLFCIGDINIDSLKYNEHPNTKIFFDNIFQHGIIPIINKPTRVTTTSISAIDNILTNSFLDKSIKTGIIKTDISDHFPIFFSFAEHATINDNSKIKVLKRKMNEHSMLKFKESLSTINWINVYQECNLGHTNSAYNLFLDIFLEYYNKHFPIQEIEVKTKYLKCPWITRGIRKSSKKKQKLYIKYLKNRNEANLNAYKKYKNLFEKIKNKSKKRYYSQQLKNNNGNIKKTWEVMKEIIGKNKIVSDILPSRITENDIEYKNKKDISEIFNHFFVNTGLNLASKIKGSETSFQNYFSDFESSLPDSNLTFDELETAIKSIKKNKAPGIDDISGNVVLYIFSVIRKPIFNIFSSSIKNGIVPDKLKIAKIVPIFKGGDTSAISNYRPISILPIFSKLLERIIYNRLYKYLIEHKILSENQYGFQTQHSTEHAILDLINNITTSFNDRKFVLGVFIDLTKAFDTVDHTILLRKMEKYGIKNQTIKWFANYLDNRQQCVTIDHYNNSKQLKIKCGVPQGSILAPLLFLIYVNDLPKVSSKLDCIIFADDTNLFYSSSSISDLFITANLELIKLNTWFRANKLSLNLNKTKYILFHPNQKKKAIPSILPTLSIDNTIIERTQSSKFLGVLLDEKLSWNSHINTINTKVSKNIGLLYKARNYLSFENLKLLYFSFIHSYLSYANIAWASTHKTKLSSLYRRQKLASRIIFYKNKLTHANPLLKQMNALNIYQINIYQNILFMFKHKMGIIPSRFMNNFFKTNINKFSTRATGNYIVPLKKRKLSQFSIAYRGPYLYNKLIPKNSSISLLKNINSLKSYLKKLVLNTSSYMEIF
>CR1-80_HM_gag#LINE/L2 14-730   [Hydra magnipapillata]
MAITLLEIQEMFILHKKEIQLLFKEQEKVFVGLLSDNLKILNARLDNFEKKLSDYDKKIHLLENDVKDLKESLNFHENLIDQKIKAAKEIETPNIINILNEKCRISEDRSRRNNLRIVGIPENANESWDETEEKVQNLLCNKLGVKGVEIERAHRVGPKKEAQSRTIVLKLLRFKDKSNILKETKKLKGLSIYVNEDFSQETASLRKKLFTEAKERKSKGENVIVRYDKLIILKKGLQ
>CR1-80_HM_pol#LINE/L2 792-3849 via tfasty with CR1-73_HM_pol, 4 frameshifts and 1 stopcodon.   [Hydra magnipapillata]
MANKLNATNFFEIFNKQNTILLNNDIDPDVNFFEDVIINSNYFDIEEVSNLMNASQSLFSTLTLNIRSMSKNFENFKSMLKNINFEFMVICLIETWCKSEKNNFQIPGYKAIHQTRGGGVGGGVCIFIHESIHFxKIEILSIQNADYESLTIELLNHNKKNVLVTALYRPPSGNKKSFQKHLKWYLKKVKNKQIYITGDFNLNLLNVKIDNDVKHFLNSLFQYNILPLINKPTRVTLLTESLIDNIFTNIFTTCNIQSGIIKSDISDHFPIFFISDFYIKEKKSKVLTEIKRQITEFNIKEFRNHLLKVNWKQLHNCKDTNKAYAFFYNEFLNAYDKAFPMKEIKTKCKNLQSPWITKGLIKSSKKKQKLYEKYLKKKTYQNEKKYKTYKNLFENLKKKAKKNYFSTLLQNNIGNTKKTWDIIKEVIGKEKKTRGNYLPKYLYTEDERTITNEKKDIANSFNNFFINVGKNLANKITPGKKNFKSYLKEKDYVMDELEVSPDELRFAFNMIKPNKSAGLDGISPKVVKEVFDIIENPLLIIFNLSFKNGVFPDLLKLARVVPIFKDGDISKLSNYRPISILPCFSKILERIMHNRLYNYLTTHKVLNNNQYGFRKGHSTEHAVIKLVKEILNGFENNQYTLGVFIDLSKAFDTVDHDILLYKLEIYGIKNNNFKWFCSYLKNRKQCVSYDKTYTKLENITCGVPQGSILGPLLFIIYINDIYLSSSILNFNLFADDTQVFYTHSNIKTIFTTMNSELDNLNEWFKANKLSLNPTKSKYTLFSKSSKSETLPLKLPDILIEKTKLQRTYCVKFLGVLIDEQINWKEHINLIENKISKSIGIMYKTRYMLDKNCLKSIYFSFIHSYISYCNIAWASTYPSRLTCILKKQKQASRLILNANKYTSANPLLRKLGVLNVYQLNIYNILLFMFRLKYHMLPNIFEDLFFIIDHKYQTKHSLLNYQVPKTLLKQSEFSITYRGPHLWNSFLLNNSKTTTSIQTFKSILKKQLLDYDVSQILFYF
>CR1-82_HM_gag#LINE/L2 62-802   [Hydra magnipapillata]
MDLTLKNIEKLITSKLEEQKAYILSETSKLLKEQEKNFTVIISGNLKILAERLDKLEXEVKRNKSNNTIIEKDIHEIKESLNFQEANVTEKXEKVKANLGYDINYLVKKTVDLENRSRRNNLRIDGVKEIEGESWEDCRNSVKEIIKNKLKISEEIEIERAHRIGSAREDKXPRTIIFKLLNFLDKTKVLNSAKKLRETGIYINEDYAKETIEHRKKLWEEVKRLRKAGKYAIIKFDKIYCREFKK
>CR1-82_HM_pol#LINE/L2 857-3931 via tfasty with CR1-27_HM_pol, 3 frameshifts and 1 stopcodon.   [Hydra magnipapillata]
MVNETIDLETLRFNIFEIANKHLPRNRYDEFSFLNEKYSDSVYFDIKNFKVELKTTINNFTAIHINIRSLPINIDKLKNFLLECKHTFSMICLTETWCSDETAEKNSDLQIPNYKIFSKERSVNKRGGGIVIYIQNDLNTKLRNDLSNSDGNIEVLTMEVTNASKNFLVSTCYRPPDGDTCKFSNYMKYLITKNREQKKLFIIGDININILKYNEHAVTKNFFDDMFQLNIFPIINKPTRVTSKSITAIDNILTNSIQDTSLKSGIIKTDISDHFPIYFSLSLDSRKIDNSKILFYKRIIDETSTQKFKDLLSATNWQKVYRECNSGNTNSAYIKFINLFMLEYNKSFPIQEKEIKAKYLNCPWITKEIRKSSKQKQKLYIKYLKNRSEANLFLYKQYKNLFEKIKKKTxKLYYSNQMQKFNGDLKKTWDIMKEIIGKGITNSNKMPSRVIINQKESNNKRDISNEFNSYFANIGVDLASKIQCPNNSFKNYLTGTHCSLNFNELNQDELEIAKKSLKIKSPGIDDISCKVVIDVFEEIRNPIYQIFNSSVTTGIVPDLLKISKIIPIYKSGEANSLNNYRPISILSVFAKLLERIIYNKLNEYLKTNKIINKGQYGFQKRHATEHAILDLSNRISKSFKQKKFTLGIFIDLSKAFDTVNHEILLTKMENYGVKNKALTWFKNYLNDRHQCVIIDKKRHSNLLKTKCGVPQGSILAPLLFLIYINDLPNASNIFKTIMFADDTNLFYSSKTIEDLFKKTNNELKKINIWFKSNKLSLNIDKTKYILFHSTQQIKKLPLNLPTINIENITIERAQNTKFLGVLIDEHISWKPHINYINTKISKNIGLLYKARSFLTQKSLILVYFSFIHSYLMYANIAWGSTHITKLKPLYLRQKHASRLVFNKNKLTHAQPLLEQMNALNIFQINIYQNILFMFKYKLSLVPEHFTAHFFENNVNKYNTRATGNFKIPFEKTKLSKFSIKHRGPYLFNKIISRNESLINLNNEQSLKTKLKSTIIKLNNYKEFF
>CR1-86_HM_pol#LINE/L2 3-2749 Fragment, via tfasty with CR1-65_HM_pol, 1 frameshift and 2 stopcodons. [Hydra magnipapillata]
EINSNFFLPGYNSIHQPRKNGIGGGVCIFILNSFTFRKLLSLSVNDANCESLSIEILNRKTKNIFITSLYRPPNGNFEAFEKHLKNILPKVIKKHIYITGDFNIDIQKINNDSYAKRFVNTLLQNSLIPVINKPTRVTRNTSSIIDNIFTNVAMTCQIKSGILKTDISDHFPNFLINYSLISESKNSFVTYVRQINNQSIIKFRELLTEIDWNLLTECNDANDAYNLFLRLFSKQYERSFPKIKKTTNSIKINNPWMTNGLRKSSRKKQRLYEKFxKNKTYNNEIKYKKYKNCFERIKKQIKKSYYSNLLEHSKGNSKKTWEVIKEVTGKKQLHKSTIPNRIKLNSNREIFDKKEIAENFNKFFINIGKKLAADITPGNKTFQSYLKKTHYVMDESELSLNELQASFNALKINKSAGFDDINVNVLKAVFDAIKLPLLFIFNLSITTGIFPCQLKIARVVPVYKNGDDSIPSNYRPISILSCFSKLLERIMYNRLYSYLEKHNILFSKQFGFRKGHSTHHAVTDLASQILDGFAKKSYTLGLFIDLSKAFDTVDHKILLYKLETYGVTNNYLKWLQSYLKNRKQGVSYDSTCTKLETISCGVPQGSILGPLLFLIYVNDIYLSSNMLNFVLFADDTNLFYTHSNLKSIFFTVNRELENLNDWFKSNKLSLNISKTKYILFHNQSKSNDLPLQLPQLIINNNIVNRVSSLKILGIIFDEHLNWKNHITLIENKISKTIGIMYKTKHLLSKKCLIDLYYCFIHSYISYCNIAWASTYPSALKNIYIKQKQASRVIFHVHKYAHSKPLLREIKALNVYELNVFQNLLFMFKYQNDMLPKSFNNRFVKINHKYLTRCST
SFLLITxLLITSDYSISYRGPRLWNIVLNENMKSITSINCFKNIVKQYLLELTDANIFLHF
>CR1-87_HM_pol#LINE/L2 50-2116 Fragment[Hydra magnipapillata]
RYQAFNNFTATFKCIFDTVCPIITSEVKNKELKNPWMTSNLIKSSKRKQKLYIKFLKSKDKGDEKTYKAYKQFFQKNIRQAKIMYYSNLLNKNKLDIKKTWSIINEVTGREKKKFFSIPQKIFCDNKYITNESDIYHEFNKHFVNLGPSLASKIVMPNKKFDEFIGEKTLSCISNEKISYKEFNKALTELKRNKSCGYDDITSNVAIYVIECIRKPLFYLISSSFENSTFPDKLKLAKIHPVFKNGDCSSVCNYRPISLLPVFSKIFERVIFNRIYNYMTLNTLLYKNQFGFQKYCSTEHAIIELTNKIFMFFDKGEHVLGVFIDLSKAFDTVDHGILLSKLKHYGIKGLIYKWVKSYLFNRKQFVVLEESGALDIVCGVPQGSILGPLLFLIYINDMNKASHKISSIMYADDTNLFYNNSDVKILFETMNTELESFNQWFIANKLSLNCEKTSYTLFHKIRQSTNLPLKLPKLSINKNEINRVNHSKFLGVIFDENLSWKKHISLIEAKISSAISVLYKSRAFLDYKSRKMLYFSLVHCHLSYANIVWANTHKTKLLRLQSLQNHACKAINYLKRLENPSPVMKYMNVLNISKLNSLQILIFMYKYKNNLLPKVFSDIFTSAFSQKYNLRSNNNHNYHLSIVKSQVSKFSIISQGPSLWNQLKNNNIKNLKSTFSFKRQMKLHLLNF
>CR1-L2-1_XT_pol#LINE/L2 786-3986 [Xenopus tropicalis]
MSLLLLVLSFMFVLPKVTSSFSPPADCPYSITISSSLLHSTHCCSYNLYTFLKNLAPPTNTSQKHNNFKSFSHLLSLSLLLLLAAGDISPNPGPCRIPISYRPRNASLLVKPSQTANLSNLIQIPTLSSSYLPFSCALLNTRSVTNKAALIHDLFCSKSFHLFAITETWLSQNDNAIEAALSYGGLSFSHTPRITGRGGGVGVLLSPHCRFKLIPIPPTFRFPSFEVHAVQLFHPLSVRVAVVYRPPSSKSLATFLSDFESWLSFFLCSDTPAIILGDFNCHIDDPSQPWPSRFLHLTSSFDLRQWTNTATHKDGHFLDLVFSKNLDLSAFNSEPFPLSDHHLISFSISHVSPSPSTNAQPKTLIRNTQRVDITALSNSLSSSLSSFCASSDPELLVNTYNSILSSAINTHAPLQPQHSRAHNPRPWLNPQTRFLRSCARSAERIWRKSRVKADFLHYKFLMVCLNTALSQAKQVYYNTLVNNNKSNPRRLFSIFNALLHPSPNESIISEHTPQDFADFFKSKVDSIRKQFSQPSDTGNLNLPKSPLSVFSSFNLVTESEVSQLLRSSPPTTCSLDPMPSSLLKQCAPALTPALTHIFNSSLASGTFPSLFKQACVKPILKKATLDPSCLSNYRPVSLLPLASKLLERLVFSRVTNFLCTHNLLDPMQSGFRPAHSTETALCRVANDLQTAKAKGRYSVLILLDLSSAFDTVDHSVLMQILYSLGIRDQAASWFSSYLSNRSFSVALANKSSTPVPLSVGVPQGSVLGPLLFSLYTLSLGDLISSFGLKYHLYADDIQIYLDTPALTTDVQTQIGNCLLAISSWMNQRHLKLNLAKTELMVFPPKPGPSPPFTITIDGMTINPVNSARCLGVIFDQSLSFSNHINNTAKTCRFFLRNIAKIRPFLSQVTAKTLIHALILSRLDYCNLLLTGLPDSHLSPLQSILNSAARILLLSPKREPVQPHLSSLAWLPVKQRIAYKILLLTFKALHSSAPHYISSLVSLHVPGRLLRSSQSLRLFTPSTPTALSRLKPFYLAAPYLWNSIPESLRREHSPTLFKKKLSCYLLEH
>CiL2_gag#LINE/L2 340-1494 [Ciona intestinalis]
IHNPKFNMRSLANPNNFAKLEALIASLNFKPDSVSITETWIVENQPGHYNNLQGYSFISNNRSKCRGGGVGLYIKSNLNFHIKQCTSIMEEKIFEPLFVTLEDISFNTTSNSSQSSSLICRVIYRSPGIDPKSNLEFRTYLSSVLDKLETRNSKCIIMGDFNYYLINENNTNTNDFIDLMHDYCYQSSIINKPTRITDKSATAIDHIWTTINSSQIKAGIITDPISDHLPIIQAINLKINNSQSNISSRNFSQKNIINFNGKLADMDISKVLQETEPNLAYSQFQQQYMTEFNSSFPETKVNKSDKSKWFNKDLYLLNRTKQKLFKKYLQRNTEENKKRYNAARNKYHHAVINGKREHYRKLFSANRLNMKATWKSINSLLGKI
>CiL2_pol#LINE/L2 1495-3225 [Ciona intestinalis]
TQYTKAFVIDGKPTTDPLIISNKFNDHFFNIAADLVKQIPPTNTHHTHYLSQKSQNSIFICPTTPTEIKNIIMDLKSKSSCGMDGIPSRLIKSTPENILLALSHVFNLSLQTGTFIDDLKIAKIIPIYKKGNPKDIKNYRPISLLPTFSKILEKLMYIRILSYLNSFKILFTHQFGFRKGHSTGHATSLLVNELTNELEKNNSVLGIFLDLSKVFDTIDHKILLSKMSHYGIRGTALNWIQSYLSNRNQIVEFNGVMSSNQNFVNLGVPQGSILGPLLFLIYINDYPNCLIHSKTIMFADDTSIFISGKTSLVISQLANTDLENTLTWLCTNKLVLNTDKTKFMYFSNSPNTKLPHVPIEIKINNNKIEQVNSFRFLGITITENLSWKLHITELIKKLRTNLAIVRKIKPLVNQPTLITLYHSMMLSHIRYCISTWCNGNKQLISKLQILCNKFIRMTFNLGKRENITSTMNQHGLFTIQEMYQIEILSFMNKCNNNKLPQPLIDIISQKPPHLIRKTRSYAKFFIPFCNKLTSQQSMRYIGPKLWSSLQINIRDQPTLRRFLAAVKQHLNLNAMT
>CiL2_pol#LINE/L2 4-3222 via tfasty with L2-1b_Cis_pol, 2 frameshifts and 1 stopcodon. [Ciona intestinalis]
CCNCCNRFHIKCLNNIPRDISPSNLKKYPNKIHDIWSCQTCSIIPDLPFSQLSDSDFRSLLSIPTFSSFDPVKLNNVFTNYNINIQETFEMNPQDIYVTAHDCKSYLSKKNKFTTLSLNMRSLANPNNFAKLEALIASLNFKPDSVSITETWIVENQPGHYNNLQGYSFISNNRSKCRGGGVGLYIKSNLNFHIKQCTSIMEEKIFEPLFVTLEDISFNTTSNSSQSSSLICRVIYRSPGIDPKSNLEFRTYLSSVLDKLETRNSKCIIMGDFNYYLINENNTNTNDFIDLMHDYCYQSSIINKPTRITDKSATAIDHIWTTINSSQIKAGIITDPISDHLPIIQAINLKINNSQSNISSRNFSQKNIINFNGKLADMDISKVLQETEPNLAYSQFQQQYMTEFNSSFPETKVNKSDKSKWFNKDLYLLNRTKQKLFKKYLQRNTEENKKRYNAARNKYHHAVINGKREHYRKLFSANRLNMKATWKSINSLLGKIxTQYTKAFVIDGKPTTDPLIISNKFNDHFFNIAADLVKQIPPTNTHHTHYLSQKSQNSIFICPTTPTEIKNIIMDLKSKSSCGMDGIPSRLIKSTPENILLALSHVFNLSLQTGTFIDDLKIAKIIPIYKKGNPKDIKNYRPISLLPTFSKILEKLMYIRILSYLNSFKILFTHQFGFRKGHSTGHATSLLVNELTNELEKNNSVLGIFLDLSKVFDTIDHKILLSKMSHYGIRGTALNWIQSYLSNRNQIVEFNGVMSSNQNFVNLGVPQGSILGPLLFLIYINDYPNCLIHSKTIMFADDTSIFISGKTSLVISQLANTDLENTLTWLCTNKLVLNTDKTKFMYFSNSPNTKLPHVPIEIKINNNKIEQVNSFRFLGITITENLSWKLHITELIKKLRTNLAIVRKIKPLVNQPTLITLYHSMMLSHIRYCISTWCNGNKQLISKLQILCNKFIRMTFNLGKRENITSTMNQHGLFTIQEMYQIEILSFMNKCNNNKLPQPLIDIISQKPPHLIRKTRSYAKFFIPFCNKLTSQQSMRYIGPKLWSSLQINIRDQPTLRRFLAAVKQHLNLNAMT
>Crack-1_BF_gag#LINE/L2 465-1238  [Branchiostoma floridae]
MPPRKQNLSEDDMSTIKDLLEQQQAKYEDLLQRQQSIFQSFIESVMTSTNNRFDNLVREVQELKSSLQFSQHEVDTLKTKLNEANSEITNLKATIDDQAKNPKSLQMPDMEKKMDYLENQSRRNNVVIDGIEDDVKETWADTEVKVRNILTKKLQLDSKTIEIERAHRNGPFRNDSPRPRQVVVKLLRFKDKQMILNRARSNLKNTNIYINEDFSDQVRKRRAELVPKMREARQRGEFAIISYDRLVIRKKTNQEMS
>Crack-1_BF_pol#LINE/L2 1408-4524 [Branchiostoma floridae]
MSNTSTQTDDFNSTPYNFEDGNLIFNPFMLDSDKESNFTDSWDPDVNFYGNFLDTNTNTPCVNYSENQFNSMCLKSGHNTNAFSALHLNIRSLPRNFDNFTHYLSTLNHDFSIIGLSETWLTQSTLQLYDFPNYTSVHRCRSNRVGGGVSLFIRENLEFVQRDDLTIHSHEGNVESIFIELPVSSSPTRKNMILGCVYRPPDTDIKDFTSHLATTLDTISKEGKTCFLLGDFNIDLLKNERHTLTTDFLNMLFSCCMYPTITKPTRITDKSATLIDNILTNSLSESYTSGTLVTDISDHLPIFYIMKCKSDVSKTNSTKRRLRKFTSSNITKFKNQLADVTWDKLYNYSNTNDAYSHFIQVITSLFEECFPIVTHSERNVEKNKPWFTPALHKSSIKKNKLYKKYVRNPNPTSFQTYKTYRNKFNTLIRLSKRNHYHKKFKETTDNIRTTWKLINELLNKKKKSNVLPSKLCDDTYEISNPQDIVDAFNNFFVNIGPSLAKKIDKTDCSPLSFINNVYPSYSFFETPTASEVQNIICNLKNSAPGNDELSTSLIKQVSSSILEPLTYILKLSLETGMVPNDLKIAKVIPLFKSGNTCLLSNYRPISVLPVFSKVLEKLVYKRILQHLEDNNILHEHQYGFRKHHSTYMTLLKLVDKITSAIEKNEFTIGVFLDLSKAFDTVNHKILLEKLNCYGFQGYVFTWLKDYLSNRKQYVSNNTYSSDTRSISCGVPQGSILGPLLFLIYINDLAYVSDELYALLFADDTNLFSSHSDLDILVSKMNRELDKVNKWFQINKLSLNVKKTNFIIFAGKKKYNKENVKIAINNTPINQVTHTCFLGVTIDDKLTWKKHIDLICKKIYKNIGIVRKIATLLSSKTYMILYYSLLYPYLAYCNIVWASTYSTSLKPLLLLQKRFVRIVSNVSYTFPSASLFRNLKVLTIYDINKLQSCLFVHKTINSSCIPKQFQNLFHHNSDHHHYNTRQSNHLKQIQVKTQQRKFSMLFKCPQIWNSLNETLHLCHSPPIFKNLLKKSLLDNQTFN
>Crack-1_CP_gag#LINE/L2 408-1475 [Culex pipiens]
MSSDEMDAENEIYCAICETAEPNAAKVLECVNCHACHHFKCKKIIGNAIAKWKKKDYFCSVLCQEIHLKATSAANTESLLLAEFQKVVSEIKNLKEEQHSTRKYVSKAVGEIEKSQNFLAHKFDEVCDNIKRLENEQHTLKGSVGVVEGKYVQLSETVNRLEGEVDRYRRSALSCNAILLGIPEVKDENLGEAVTRFAAVLGLNITEDFFSDVKRLRDSKSESRSPPIRIVFASEPNKEQFFAKKKEVGQVQVSTLGGCYSGKSGRVMLRDEMTPHGLALLREVKEVQEQLDLKYVWPGRNGVILVKKTDKSKVEYIQNRNDLQKLNKLSSKRGLEMSLSGPISSSSVIEQDPKRR
>Crack-1_CP_pol#LINE/L2 1525-4413 [Culex pipiens]
MASCIVKNVSFDCIEDCICNKVNVSVALRVFQWNIRGMNRLDKFDNIKEFLHRYKSPVDVLIVGETWVKEGCTELYGIEGYSAVFSSRSDSHGGLVVYFRDKLKCFVTKNVNINGCHYICLHLQHAGKPIDLVAVYRPPSYPFGATLEIIDKILSELPSEHVILAGDFNVPVNITTSPAVQEYLRLLDSFNVQVTNTVATRPSSGNILDHMICTTTFADTLLNETIFTEASDHSILVSSFNWHATKKLRVLEKQIVDHQRLNTLFSSALENMPDGMNANEKIAFITDKFNEIKKSVTKTVSVEAKIKGHCPWMTLDLWKLLAIKEKLLKKSRTNPLDMQTKSLLKHASKKVQSKKEECKRNYYYRQLSSSSTKQCWRCLNEIMGKAAGSVKEMKLKIEGTEVTDPVTVSYELNKHFCTVGSNLASTIISDRNVLKFNTLRRIDTTMYLHPTTSEEVLLLINKLDCSKSPGPDNITAAALKKHKLAFSCILRDIFNEIILTGRYPDQLKSARVVPIFKSGDPMDVNNYRPISVLSVLNKIIEQLIASRIKSFLNSLELLYKNQYGFRRGSSTRTATSELLDDIYQDLDGKRFTGSLFLDLKKAFDVINHGLLLQKLERYGIRGAALSLLRSYLSNRMQFVNSNGINGDSAIIDTGVPQGSVLGPLLFIIFINDLSRVQLFGKVRLFADDTVITYSHKDAVHITQMMQADLQTLNEYFTSNLLFLNLSKTVFMIFHSPQRTVPELPAVAINTTEIKKVSSFKYLGLVLDETLNWKPHIDQLKKKIAPACGVLRKISSFVPFRWLKSLYASLIHSRLQYLVINWGTANKVNLRELQTLQNRCIRTILRKPALYPRRSLYNDVNHSFLTIRALHMFQIYVHMYNIMHNPTTHHNFNPVRVEHARITRQTGDLRTTLPHTEFGKRCLSYSGCYQYNKLPDFIKQSPSQITFKCQLKSHLKQKIEQYLQ
>Crack-1_CQ_gag#LINE/L2 212-991  [Culex quinquefasciatus]
MTGSDRRSINSKGGKNGKSANSETANSTVSQQLQEISAKLQKLDDLEKLNKDLYGKLLQLAHRVDVVSAENRLLKREIEDLRQDRLQEEVLIKGFKFERPNQHLEVFRGVCERAGFDTPDDVKEVRPLVFKNNKRTDAVLVKFWRVEDKGRFIRCIRSLKKPIAPRDIDIRSPNKFILVQDHLTPEKHKIHTKAWDLCKLGLQRPWIYKGSTWITHPESNKRFRVADLGDLADIEFVLVTREGTAQGSATVQSKVTVSEQ
>Crack-1_CQ_pol#LINE/L2 1002-3986  [Culex quinquefasciatus]
MEDIETLPDFHSHNFLFDSINNYDRDFSNFHGLLIFQVNARSICKISRFDQLKFVIEQLKRKPDVIVVSETWVSNDLIQLYRIDGYNSVFSCRKNGTGGGLVVFVLDNLTFTTNCSLELSSVPKPINFIQISISVSNNRSIVVSAYYRPPDDRNLTDFFNHLELILSASNSIHVLVGDINIDSSSSSNKFLDYLNILTSYGFLLTNTNITRPSSSSILDHVAFNHTDDFTVTNDTITNPDSDHNFILSLFDITPISTSAKISYKHQTNYVRLEQLLEMRFNPVYMGNFDDPNEFYNYFISTLTKSIQESTIITELKSKSKHICPWFSDGLKTLLNSSKNLRKKRNKLFAAGKSISEIDSKIHDLTNKIRTYSNTLQTQYYTNKFANATNAKDTWKNINDILGRKIHSKLPTEMLITDAFGNDEKINNAQLISNEFNNYFSSIGEKMANKIPSFPNDNINKFKTLKRPNSTFFLTPISQTEIFDIINSLKNNTACGNDHINAFTLKKINHIISPVLAEIFNLCIILGVYPDKLKVAKVTPIHKSGSTSSFNNYRPISVLSAINKVFEKLLFNRLTTFLNSNNFFCHQQYGFRERSSTFNAVVDLVNKIQHDLDNRDDVLGLFLDLSKAFDTVDRRILFEKLKFAGIHGVALDLFKSYLTNRSQFVCFNGISSLMNLIDVGVPQGSVLGPLFFIIYLNDFSRLPLKGDLRLFADDSSLFYNSRLNSVNDLNLKHDLLIVSEYFRINKLTLNINKTNIINIKNSSLSTPNPLIQTKIEFPDIDIVSEFKYLGILLDSRLNWSSHVNSLILKLNKITGIVFKIKHKLPRNVLILIYHSLFNSLLSYLTAVWGNTYDYLLNKLQIVQNKFLKSIFNLPLRSHTVDLYTKEKNIMPVRGIYIIQVCSFIYKSLSNQTHTNTKFELSSHQHGTRNHNLLKRPNVSTLSGERSITFKGANYFNFFFNKFGLCSSLSIFKDRLKLYLAQPEIVEKLIKSIDILS
>Crack-1_CS1_gag#LINE/L2 378-1028  [Capitella sp. 1]
MTTRKFSVDMKAFLTDPDGATLLRDTICGHLCSMIESLKTDLKRRDDRIDHLETRLEELEERNDTLEQYTRRNSVRINGISESAAEDCENKVLSTINEKMSLSPPMTMDSIDRMHRIGKPVPGKHRSIIVKFATYHQRKRVMSKRSSLRGSDIFINEDLTKHRNNLLYIARQFKKKGGITDCWSYDGRILIKDNKNLIREIKKHTDLSSLQTESQPN
>Crack-1_CS1_pol#LINE/L2 1336-4386  [Capitella sp. 1]
MVFNTFLIDEDSIMDELNDIDPDLCYYNQVIANMNCEYYSENNFNEKLNNRNNIQATTPFSLIHSNVRSFFANGNDLTHSMDLCDHQFSIICLSETWLTPSTYLSAAIPQYNHECRYRSKKSGGGVSIFIHNSIQYSPRHDISIFNEDIESIFVDIDKSVINTDRNVIAGCIYRPPKSSISEFNESLRSILGKLSKENKDAYLAGDFNIDLLSVDSHLQTSEFLEILFSFSFFPSINKPTRITASSATIIDNIFINNLHSKSITAGILAIGISDHFPVFCSTPVNMSQSPPREHFSNVRILSERNKIKFESMLRQFDWTTCIQQTCCQSAFSLFYFQYKKCFDECFPLIKTKSTYKNKKPWLTGALKTSIKAKNKLYRKYIKSKLEQDLNTYKEYKSKLKSCLRRAERAHYDQLFTQYKSNLRKSWALIKDLINKKSTNKSQSFKINVNGVETSNMSTITNAFNDYFVNIGPSLAQSIPNTSKNPIDYIRASASRSMYLTPVTELEITNIIREMRDCAPGPDAIPSAILKETATIFIPVLTQIINLSFSEGVFPNDMKCAKITPLFKSGDKTSINNYRPISLLPSFSKIIEKCMSKRLLAFIDEHSILYKYQFGFRPKYSTNMAIHLLVDKIVSCLDKGENLVGVALDFRKAFDTVDHLILLKKLEAYGVRGNAYDWFASYLARRTQYVEINHTRSSSLEIKCGVPQGSILGPILFLIYINDLPFSSKLMPIIFADDTNVFLGGKSINQCIETINIEMNNLSKWIQCNRLSLNVTKTNYIIFSKSKVLSANLLPLTINNTVIDRVYSLKFLGIVIDDKLSWSEHIKYIRGKISRSIGMLSCARKNLDRKTLIQLYYAFIYPYLSYCIDVWGHCSQQLFLSVFKTQKRALRIISFSKRLAHTEPLFKSFEILPLQAIYILALSKFMYKFYFRLLPSVIDELFQSNNSVHSVPTRQQNLLHVPHVISETSRKSIRVRGVSTWNRLAQNININSFSFNKFTRIMKDKLLNDNVFSISITQ
>Crack-1_HM_gag#LINE/L2 86-808  [Hydra magnipapillata]
MKNIEKIISSKLEEHKKSILKETERLLKDQEKSFTSIISANLKIITDRLDMLEKDINNNKCKISNIEKDLCDIKDSLNFQENDISEKISQIKKYYDKEINSLYKKSIDLENRSRRNNLRIDGLQETPGESWEDCEKAVKDIFKTLLKIPSEVVVERAHRIGQFKENKPRTLVLKLLNYQDKNKILKAVKQLKGTGLYINEDFAQETIYHRRKLWEEVKKLRSEGKYAILKYDKIFTRDFKK
>Crack-1_HM_pol#LINE/L2 867-4792 After removal of a 855 bp insertion.  [Hydra magnipapillata]
MNNKTIDFESMRFNVFETANNILIDADTHIFQMNNFDSRYVKTETFKTELETIKNNFTVIHINIRSINKNFDKLKHFLIDCNYLFSMICLTETWCSDESIQNNTNFQIPNYKLISSERKTCKKGGGIATYVRNDQAIKVRKDHSISNADSEVFTIEIINSKFKNIIVSTCYRPPEGNIKTFSKYLEEIFLKINKEQKKLFCIGDLNIDCLKYNEFPITKLFFDNMFQHCILPIINKPTRVTLNSISAIDNILTNSFLDTSLKAGIVKIDITDHFPIYFTIKNDTRVNNNLKKITYKRKINKFSIQNFKDTLSAVDWVKVYQECNLGNTNSAYNTFTDIFLKHYNNHFPIKEKEIKVKYLSCPWITSGIKKSSKTKQKLYVKYLKNRNEINLSTYKQYKNLFEKIKKHSKKIYYSKLLKKTNGDMKKTWNIMKEIIGKKNKKTNSLPDRIIINETEHDDKNSIAEHFNNFFANIGPNMASEILTTNDSFENYLTDLNSELIFNGLSYEELENAKNSLKINKAPGIDEICSNVVINIFPIIKKPLFEIFKSSIITGTVPEKLKIAKIVPIYKTGEPYLLNNYRPISILPVFSKLLERIIYNKLYIYLTNNNILNKKQFGFQKQHATEHAIIDLVNSINYSFDNNEFVLGIFIDLSKAFDTVDHEILLKKMEKYGVKNVALLWFKNFLLNRQQCLNTDENICSKMLKIKCGVPQGSILAPLLFLIYINDLPKASNKLDVIMFADDTNLFYSSPSITELFETTNIELEKLNNWLKSNKLSLNTEKTNYILFHPNQKRKKLPNILPLLRIKNKNIERTTTTKFLGLLIDQNISWKAHIDYLNTKITKNIGVLYKARPMLSQENLKHLYFSFIHTYYTYGNIAWASTHKSNLKSLYQHQKHAIRIVYKKDKLTHAEPLFKLLNALNVYRINIYQNLLFMLKFKLGLVPPHFLNEFFKSNKNRYDTREVGNFNVPFRKTKLSRFTISXRGPYLYNKLISKNAIITKLDNINCLKILLKKFVLNISNYLNFH
>Crack-1_IS_gag#LINE/L2 388-1296  [Ixodes scapularis]
MSDEDDDVCPKCHEVLSDDKPNITCPECQFTYHFGTCCGIAESTFKARNAKSQKAWRCETCSVAKRSQTGKAKKDAEIDVNSLLTSMNLKLNSLLSMKETVSAVETSVQNMSDQYDELLKSVGQHDKDIKSLTKRVEKIENAGTEGQLTELKRELNRLEWHNRKQNLEIHGVPQTANENLLSLVNEVAAKLDVPTLVPCEIVSMHRLPSKPEKIPGIILHFTQQQTRDRWLDKRRNLKRPNDNEYILENMTRQDKALLWSTKQWAREHNFQYVWHRNGNIFVRRKTGDPAKTVKSEHDLPNMS
>Crack-1_IS_pol#LINE/L2 1359-4197 via tfasty with CR1-20_SP_pol, 1 frameshift. [Ixodes scapularis]
MAVSEYVLPSEFEAFIGEEFSLSTHCLHINIRSAKNKRVDLECFFAELSDFEIIMLSETWYTDHTDVFRLPLYQVFFINRSETRGGGVSILIKESVDCELVPSFTVITKDYEALSLRTKNDFVSVIYRPPGGALSPFLNFLSSLFDFANENKLNIICGGDFNVNMLSNTVSKRELENLILINGCRTVINSPTRVNVTSKTLIDLFITNYEESRIRSGIITYDLSDHLPIFLCVKMNNAKKKDPTPSAQVQCVTPDGLERFAECVANANWDDIFSKNDPDEAYNFFLERFKSLYQSNFPYKLIKVKKRIRKPWITVDLLENIKVKNVLYRKFTKTRDPNDLRTFKSYRNQLTNALRKARERYHYDSFRNSVGRSDLMWKNLNSVIEGKTSHCVECIISAGKKLTGVSLANTFNDRFVDLPQINCRDAACDNITFKTRDSIFLLPVTDTEVSTVFMELKNSHSCDADGMQIRPVKYVLPLITPFLTYIFNLCFSTGVFPQLMQKARVSVLYKKGDKNDINNYRPISILPVFSKGLEKLIHIRLSNFFNKYRVITNDQFGFMKHRSTDLALLEQKEFILESFEANQIALAVFIDFTKAFDYLNHNLLLKKLYLYGIRGQALTLLQSYLSNRKQFVYLNGFSSNTKSVFSGVPQGSILGPLLFNIYINDIVNIDSLAKFVIYADDTTLLFSAKTSDELINCANDTLTGLQNWTSDNGLKINSSKTKAIFFRTKNKSVFITKSLVINSNVIEIVENFKSLGVIFNQYLSWDDHVSYILPRLSRVIGLVSRNRFILPNNVKLLIYQTLFASHLNYCHLVWGTTTSSNLQKIHLLQKKFVRLIANVSYISSSKGLFEKYNLLRVFDMYTYKLMVRFKVEKKRNVDILAKLSKLREHVTSYPTRSAARWAVPLCHNNYSMQSLKYMLPTLLNFLLNKNVDIMSVTMQDLFSYLN
>Crack-1_NV_gag#LINE/L2 123-908  [Nematostella vectensis]
MDETLLERVNSLEKSMDFFNNQFELIKKKVTTLERENEALRVENNVLNSRISTITDKLRDQEAILDEQEQYMRRECLEFKGIPSLEDENTNDLVIQVAQLAGVELDEDDISISHRLPAANNREWSDYEGNVHPPSPPTIIAKFVRRDIKDEIYKARFSLKDKTTQDLEDFNCTDHRNHIYIAESLTQARKKLFKACLKAKKDLKFAYAGTANGKVYLKKDKKSRAVYINSPTDIAKLRRSHAIQPPIADVSRSSRPIDQASS
>Crack-1_NV_pol#LINE/L2 1038-4274  [Nematostella vectensis]
MTSTECRNCLKVVKKNSRGIQCDICLEWFHLKCTVLSVKEYNYFSRTNDLWICLFCRHAIFPFQSANNTALAELAYNSNEACLCSRKIANLNLDSLPCFDVMSSLEKISSLSNVEIQSSLAEKAFSALHFNIRSLSKNFDRFCHLLDELQNPFPVIGLSETKILDGLPPLTNTCMTGYNFLSQPTLSDAGGVGFYIKNNLVYSKRDEFCCSKPEFESLWVEIEIPQQRNIVCGTIYRHPNSNLDTTLNFLYDIVERVSKENKFCLIMGDFNLNLLNYDSNSDTNDFVNSLGAYHFHPHILKPTRITEHSATLIDNIFFNSLEHQTLSGNILTGITDHLPNFLIINKLAPLPQSYKMYKRDFSKLDKEALLSDIQSINWIDVLPSNDGSKNVNDIFQSFFSNISAIIDKHVPLRKRTRKEIKSLSKPWITKGIITSIKLKDKFYKKYLVSRSEYYLSKYKCYRNKISQLIRTSKQNYYQNYFATNSKNIKNIWSGIKELITTKPTCSNQPSKLIINNKTVKDPKAIAIAFNNFFATIGSQLASKIPHVDRSPESFLGPPLVNSFVLSPVTAFEIEDIISGLNPSKASGPYSIPVCLLKFLKSYLSVPLEILYNHSFSNGCVPDQFKIAKTIPIHKKDSASCMDNYRPISLLSIFNKILEKLMYKRLIAFINKYNILYDKQFGFREQHTTFHATLLIVDKIQRAIEEGQYSCGIFLDFSKAFDTVDHKILISKLAHYGIRGIANEWFSSYLSNRRQFVSVNNSESDEVVLTHGVPQGSVLGPLLFLIYINDFHRCSSIFDFHIFADDTNLFYSNSSLLALESCINENLLHVSSWLAANKLSLNIDKTNFIIFHPPQKISNYTLSIKINGKCIKKEKYIKYLGIYIDSHLSWKYQILHIAKKIKRCIGVLSKIRHYVNISVLKMLYYTLLFPFLTYSVVTWGNTYATTLKPLFILQKRAIRILTFSDFRTPSNPLFYQLSLLKLHDIIYLNNALFMYDFHSDHLPSVFKSFFTNINRIHQYNTRLASRKTYYLPKIRTNYGKFNIRFLGVKIWNDIQDDYKSESRSSFKTLMISSLLDRYKS
>Crack-1_SP_gag#LINE/L2 273-1043  [Strongylocentrotus purpuratus]
METVTMEAFQKALQSETYNSIIQGAIQTSVNREMCSILQRLEMNESKIMDLEVSLKIKKAEVVQLSKHVEEQANIIKALKNVTNDQEQYSRRNCLRIFGVSEKKGENTDEIVCELATKKLGVSLKIGDIDRSHRVGPRKPEQPNEPEQLNGPVGPQREATTLSGKETKTRHRPIIVKFASYRARRAVISQRRKLKQSKMGIEEDLTRTNQEILLKTRNHNKVVAAWSSDGRIIALMKATGGNTIKKLIKSLDDLKYL
>Crack-1_SP_pol#LINE/L2 1096-4005  [Strongylocentrotus purpuratus]
MSNVNLKDQIISIQSLKGLKIAHLNCTSLTKHLDEIKCMLKECNFAILTLSETHLSEYISNGEIQITGYDIIRRDRNRSGGGVAAYIKHGITYTQIDDIVPDNYLEIITLEVKFGRYKSFYVIDWYRPPNAKAECFDMFANILQAIDDLNKECIIMGDLNCDVLPLPKSWQTNRLTDISELYNYSQLIAAPTRVTQTTSTAVDLILTNTPLKIRHSGVLEITISDHYLIFCEFGNDRPHNAYHKYHVGRNFKRFDETHFKEDVQDINWDAVHSELNPDQACDILITKLVNVINKHAPLREKRVKNKDSPWMTQNILQKIKERNNQKIKARNTRNGDEWGKYKRLRNNVTYMIRKAKHDFISQKIESSNKNTKEIWKSLRYLAPSKSRDGHVPKLVIDGKEYDKNDDIANHFNDYFVNIGKDLHDSINNESESDDVPRIVYSAGCTFSLKAIEESHVLKVLQSLSPNKATGPDQIPAKLLKSIATSIVKPLTHIINRSIIEGIVPSKWKIARVTPVFKQGDKMSTNNYRPISIISVLAKVMEKIIYDQLYYYLDTNDLLCQTQSGFRAKHSTQTALLNVSEEWMNAIDNGAIVGAVMIDLRKAFDTIHHKTLIDKLSAHGLDEQTVCWFESYLSERKQSTNINGAHSNYKYITTGVPQGSLLGPVLFSLYINDLSLVINKCKISLYADDTCIYYSSKKPGEIQQSLNEDLGQLYRWLQSNKLILNLEKCELLLMGTSRKLKVLNDNIPFRVMIGGSQIKRVQTCKYLGVILDEHLNWNAHIGYVKKKTLNNLYLLKRIRPFISKDVALLFYRSNIQSYFDYCSLVWCNTGKTNMQTLQLLQNRSLRVVLRVGYMYSSQLIYDSLNFDKLDVRFCKHLAHLMFKVVKKELPSYIYMQFITQTFNYSLRVGDVHFSIPRIKTNYGKRCLRYRGSKLWNVIGKSSSVYTLTAQQFKKYIISLDWKHIFTQMYPY
>Crack-2_BF_gag#LINE/L2 392-1165  [Branchiostoma floridae]
MPNRRNQKESADDDYVTMKEMKEMLEQIKQHYEDKIDQNKQYYEDLLKRQESIFQNFTKMLMDSANSRVDSLVREVQDLKTSLQFSQNEIDSLKVEIKDAKKSSNVDDESAVAKKVDYLENQSRRNNIVIDGIEGDNSKETWAETEGKVRDLLTKNLKLEAKDIEIERAHRNGVMNKDNPRPRQVVVRLLRYKDKQLILNQARSHLKNTPIYINEDFSEAVRKRRAELLPELKAARSRGEYAVLSYDKLVIRKKTKP
>Crack-2_BF_pol#LINE/L2 1236-4364  [Branchiostoma floridae]
MSSRIFDTQGMQCLQMYEDDNLTFNPFLLNDDNESKSKYIDDWDPDVNFFNHAMNNSCQYYTENSFKNLCTELSHTSSTFSMLHLNIRSLPRNYDSFTHYLSTLQHDFSVIGLTETWLNDSTSHLYDLPNFASLHRCRSNKTGGGVSILIHQSFEFIERNDLCIQSEEDMVESLFIEILPASHITGKGIILGCIYRPPNTQIKNFISNLTTSLDMINKEGKTCYIFGDFNIDLLKHESHSLTTDFLNTMYSCTFYPIITKPSRITNRSASLIDNIMTNSTTNPHSAGLLVTDISDHLPVFCITDYEISKNQGVTIGQRRCYRNFDLKNVNEFKALLSKENWEFVYNNTDANACYCNFVKIFNTHFEKCFPLKTISTKKNLESNNKGWFTKGLRKSSNVKNKLYRKYLKNPTPTTLQKYKTYRNKFNGLIRSSKRQYYQDRFTTVSNDIRNTWKLINELLNRKKASPTLPSKFMDGEDEITNQQNIVNKFNDFFVNIGPSLAKQIDKTDNSPLSYLQNEYPTISLFDAPSTAEILDIILNLKNAAPGKDEIHASLLKKVASEIVEPITYVFKTSIETGKVPSDLKVAKVIPLYKSGNSCLFTNYRPISILPVFSKILEKVVYKRILKHLDDNNILYTHQYGFRKNYSTYMPLIQLIEKITSALENKEFTIGIFLDLSKAFDTVDHNILLDKLNTYGFKGSVLKWLKDYLSERTQYVSNNSFVSSQKFVTCGVPQGSILGPLLFLIYVNDLPMISDKFFALIFADDTNLFMSHKNFDTLISTINDELCKLNQWFKSNKLSLNIDKTNFIIFTGRNKKYSKEMAKLHIDNKPIKQVSNARFLGVVIDEKLTWKFHIDIICKKIAKNIGIIRKVANCLSRKIFMTLYYSLIYPYLTYCNIIWASTYTTSLKPLHLLQKRFVRIASNASFIANSATFFHNLKILTVYDINKLQSAIFVHKVIHNNSFLPVLYKDIFKYNADIHNHSTRQQNSLRPIKTKSNLTQFTIMFRGPSIWNTLSLSLRNCQSLSIFKKRMKNNLIEKPTIYS
>Crack-2_CP_gag#LINE/L2 304-1356 [Culex pipiens]
MSHGEDAIVCAGCEKEEADENKVIECVECHRYWHTKCKKLYGSTARRARSKPFLCSTECSELRSSVENDKKAEGLIAKVLSEVQCMRQEHAESNRELRNAFKELEKSQSFLAEKFEGINNDIKDLKLGQHFLKGQVDEVHERYESVGATVERLEKEVDQHNRANIKKNAVILGVPATKDENITAVIEAIAEAINCQLPEDAVFEAKRIGDQKDGGKVAPIRVVFANEETKEKLFDCKRTHGVLKAAQLGSNFASASGRIVLRDELTPYGINLLREVRDLQESLEIKFVWPGRDGVILMRRTENSKIERVRDKNDIRKLNQRRAKRSLDETNSSFNMSTNSSPRIQQESKKR
>Crack-2_CP_pol#LINE/L2 1405-4311 [Culex pipiens]
MSVLNYNYECIEECITNKAELGFHASFRVFQWNIRGMGSLTKFDVIKEFLDRYNERIDVIVIGETWIKEGCQDMYVLDGYKAVFSCRRSSHGGLAMFVREDLHLNLTEVRHTEGFHIIDADVQACGRDIHVIAVYRPPGYPFTSFLDIIDDKLSRTKKDQQFFIVGDVNVPTNLPADNVVREYSRMLSSHNLKVTNTTVTRPASGNILDHVVGSIGLGANLLNETIECEVSDHSMILSSVNFKVPKVTQILEKRIINHTLLNQRFANVLANLRSDLDANEKIKEISARYNDVLNASSKVVTIEVKTKGYCPWMSYDLWYLMRMKENLRRRSKTHPSDSHLKDLLKHVSKTLQDKKEKAKREYYHNLIHNSSEKNSWKLINEVMGRKTKTKQEISLKMNGETISDTSQVANALNEFFCSVGAELASEIDSDKNIWKFQSLPSCNLSLFLRPATLEEIILLIKDLNVNKAPGPDGVPATVIKTHHLAFANILLEVFNEIISTGQYPESLKLARVVPVFKSGEATNVNNYRPISTLSAMNKIVEKLIAKRISAFLSANGLISNFQYGFRQGSSTLTATNELLEDIYGHLDNRRFSGALFLDLKKAFDTVNHELLLRKLERYCIRGIPNKLLRSYLSNRLQFVSVNGFSSDHLHIATGVPQGSILGPLLFLIFINDLPRMTWRGQIRLFADDTVLLYGNADSTRIAEDIKADLQCLLEYFKSNLLSLNLGKTNYMIFHSAWRNVPVLPAVLVEDVEIQRVSVYKYLGLILDSKLNWELHIDHLKQKIAPICGALWKMSSFVPRTWLLKLYYTMVHSRLQYLTAVWGSARQVRIRELQSLQNRCLKVVFNLPRLYSTQMLYEDPRHSALPIRGLHAIQNITLTHNMINDPETHHNLELPTLNSGRPTSSTGDLRLTRPNTELGKNRFTYIGYKLHNLLPVPLKLVTSKQSFKQRLRSLLKSTVSCFLAANDVRL
>Crack-2_CQ_gag#LINE/L2 76-837  [Culex quinquefasciatus]
MDSNLIAELPKILDAVKEESKSVKEIVASQQFLSNQFDKMVQMMGSLSDEIKHLRAENGLLKLSLNRLADNAKSISNVVEQAEKDIDSHHRAQLSINAIVLGIPRTPQEDTKSIVLEICDILGYKDGEKNIVSCCRVANSKAACPPIRISFKHVRAKESLLDHKSSFGKLDVATLQGVRGPKGTTGKVVIRDDLSPLSMRIFQELKQLQNSLELRYIWPGRHGAIMVRRTDRSKAIPIQSRQDIQKLALSCRKH
>Crack-2_CQ_pol#LINE/L2 882-3779  [Culex quinquefasciatus]
MNLIQHAXNESVDDPSSLRLPPDSTVFKILQINIRGLNRMEKLDSLCVYLHNLNASIDVIVIGETWIKQGRSQYYNIPGYHSAFSCRKTSAGGLAIFVRNDLNFEARTNVADGGFHHISIKVDKSPSSVFVHGLYRPPSDDTSRLFSAIEEILANSDPASPCFIVGDVNVPVNQPHNVNVRRYNQLLNAFSATVSNTIITRPISSNLLDHVVCSIADSTRVSNYTMPCELSDHSYVLTVFKLKADHQRKVLTKTWVNYALVDAEFQRFLENLNQNSLPVDECLQSITGTYSQLIQANSRTRTVEVKVKNDCCPWYNFDIWKLGNIRDSILKRWKRNRQDQHLSELLARANYNLSEAKKRAKKQYHTKLFNNGNAKLLWGRINELMGGKSRTNSAPSLEVNQNIEHDPVTVANLFNDYFVSVGDNLASQLTSDGNINRFNTMKRSNISIFLRPASVLEISNLIHELDPKKASGYDGFPVSALKKHRNLLSAIICNCFNQCVSLGTYPPCLKKAVVHPIYKNGNPRDPTNYRPISVLPVINKVFEKLIYARLSNFLVATKRFYAHQFGFRKGSSTEIAVLEMTDEITKKLDQKMSAGTIFLDLSKAFDTINHEMLLRKLEVYGIQGLPNALLRSYLSDRLQQVTVSGVRGNSRFVRCGVPQGSVLGPLLFLLYVNDLPNLVLKGKPRLFADDTAISYYGSSPNQVIEFMREDMELVMNYLDNNLLSLNLGKTKLMHFRYPKRVLPPHPALTVRNQTIEEVTSYKYLGVHIDNRLCWDVQTREIVSKCASLCGILRKLSTTVPQHVLLKMYLAFIHSRYQYAVAVWGGCSKTHLSDLQVQQNRCLKAIFKLPFLHPTRELYLMRQHTVLPIRGIFMHRIAVIMYRTLNNVNLHHNFEFRTAIHQHYTRQAHHLRRSDFRTETGRRRFVVAGPTVYNSLPDEIKQARSLSEVKSKLTAYIRSNVNNYLLH
>Crack-2_HM_gag#LINE/L2 292-1059  [Hydra magnipapillata]
MAVTLVEIKKMIKDLFTKYKVETEAALKQQENNFINIVSANTKILNERLDKVEKNILENAKKISTLATEVEEIKVSLNFHEELIENKIKTALDSFIKNKPTHNEIQNNNIELKKINSKLREIEDRSRRNNLRVEGVKEDDNESWLESETKVKKIFDEYLGIKDVKIERAHRAGKEDIKKHRTIVVKLLDFKDKEAILKNSSKLKGKNIFINEDFCAETNRIRKDLREKMKIERQLGKFAYISYDKLIVREWNAKKK
>Crack-2_HM_pol#LINE/L2 1216-4302  [Hydra magnipapillata]
METNNNDFEKIINLFETHALHLDDESDPDINYFNEINSPEFETSYFYPSNVSKILKSENKSDYLNAVHINIRSLKKNFENLSNFISEAESSFNLICLTETWCLHADFKNNSNLHLPGFDPVILERSTNKRGGGVLFFVKNDLLYKVRSEMCVSDENKEILTIELINKRSKNILISCCYRPPTGRIENFGNFLLNNIIKKTDLEKKKNYLIGDFNINSFDYYENQSSRKFFNGLFETGTIPLINRPTRITSHSSSLIDNILTTDFFNKSLKKGIIKTDVSDHFPIFFSICVNLKKEKQGKLLIKKRLINNNNLNSFREQLSHIDWGYINFNDNINIIYDNFFKTFYQVYDSNFPLIEIVLSDKEMSSPWITKGIRKSSKIKQKLYIKYLKSKSEKHKQNYKTYKNLFEKLRKNAKKNYYSNLLNKYKHNSKRVWQIMKEVSGKLKPNKNLLPNFIQIENKLINDPNDIAFEFNKFFSTVGTKLSDSISFIKDKSVDEFETSISLNLNFTELAFNEFEVAFKSLKRNKATGYDDINTNIVIDSYDVIKDILYKIFRASISQGSFPDKLKIAKVTPIFKTGDRTNITNYRPISVLPVFSKILERIMYNRIYSYLVENKILYENQFGFKKNNSTEHAILQLTRNITDSFKDSCFTLGVFIDLSKAFDTVNHQILLKKLISYGIKDKTLLWFESYLTNRKQFVYNKDSISHLLMNITCGVPQGSILGPLIFLIYINDLHKSSNLTTINFADDTNLFLSHKDINMLFTNMTNELKKVSVWFKQNRLSLNIEKTKWTLFYPPLKYQKLPHIMPDLLIDNIIIKREKVTKFLGVYIDENLSWRNHIDNTSNKIAKCIGILYKARNILSKHQLTQLYYSFIHCHINYANIIWGSTHRTKLKSLYLHQKHATRVINFKNRFFHTKQLFKEMNILNVYQLNVFNILCFMFKCRENLSPNVLQNFYCMKPKNKYNFRINNSLIAPFCRKSKDQFFVSYRGPYLWNKIVLPNFDFSTQMTFASFKQKLKKIIFLIENILIYF
>Crack-2_SP_pol#LINE/L2 1-2238 Fragment [Strongylocentrotus purpuratus]
GLLYYDISDHLPIFIISKVHLVKKITKNNCAMHRKQTKHNIESLNFDLAKEDWVEVLCVSDVNVAYEKFLEIVLHYYHKNIPLVKIKKGKKAKQPWITKGILRSIVARNKLYKEALTSQCNDKLKKYKTYRNHLTSLIRLSKKLYYSNNIESNKSNNNLLWKTVKELLGKKKTESNKCFLIDEQQITDPIKISKAFNEYYIDVGPNLAANIDSGDMDYNKSLNFPRENSLFLTPTNDYEIINVVQHLNSTKSSGHDSISVHLLKQIIFNMVTPLTYIFNLSISTGVFPHLLKIAKVIPIYKKDDSSVISNYRPISLLPSISKILEKIIYKRLNTFLQKNNSLIPNQFGFRIGHSTDYAILHMYDKIIEAFANSEHIVGVFMDLSKAFDTIDHKILIHKLQYYGVRGQALSWFTNYLQDRQQYVSFQNHESTKLTIKCGVPQGSILGPLLFIIYINDIIETSSLLNFIIFADDTSISYSHKNFDTLITRLNCELMKISRWFKSNKLSLNLSKTNFIHFKQTNVHDIRNCNIEIDGLPLIEKQSVKFLGVTIDSHLNFNEHIRNIHTSISRNIGILYKLKKILSERSMIILYNSLILSHVIYCNIVWGNCSLTRINSLFLLQKRAIRMITNSHYISHTEPLFQRLKTLKIQDIHIFQTCIFMYKYSHNQLPSLFHNIYSLNSNIHTYPTRCSTNYHLENPKILLAQKSVRHHGPDVWNSLPNSIRHCSSLYSFKASLKKTLISKYLHN
>Crack-3_BF_gag#LINE/L2 432-1190  [Branchiostoma floridae]
MAPRKGNTSEDDSVSLSVVKELLELQERNFKSFLDTIMESTHKRMDNIIREVQEIKDSLHFSQKEIDDNKLNLYRHVQKVEDIETEITLLKKDITANDTKVDYLENQSRRNNILIDGVADTKDETWDQCEQKVRDLLKEKLKLDPKQIEIERAHRNGRFQDGGRPRPIVAKLLRFKDKDTIIKRAKYLKGSTIYMNEDFSEKVRQKRKELIPEMKAARERGNIAYLKFDKLIVHPPGEGGADRRRTRADSRH
>Crack-3_BF_pol#LINE/L2 1249-4308  [Branchiostoma floridae]
MNSNPPQPSTLIFNPCDLNNLDNGSQISPLDPDTNFLNDFYTSINTTSQYHTVESFNKSCSTPCCNTLSLFHLNVRSLPCHFDELNEYISSLHQHFTVIALTETWLTENIAENYSIPGYNSIHHCRKNRSGGGVSLYIRNDMYHQERGDLEFVIDDTGTKSISIEIIPSNPKEKKTILSCVYRPPNTDIIEFNERIKESINNINRERATCYIIGDFNINLLNNTNQPTTDHINEMFSSGFYPLICRPTRITPYSATLIDNIYTNSGSNNIKVGILITDISDHFPIFLSSELNEPVRQADKISYRQVNTTNIQKFTQSLSEIVWSDVLNETDTEKAYNQFLETYGSLYEKCFPKKTTKISQHSRKKPWLSNGLLKSIRRKNKLYTKYVKNPTPLNHSIYKKYRNKLNHLLKTTKKDYYHKKFNEATSNIKQTWSLINEVINRNKSNSAGPNKIQIGTKTTENKDEICNEFNDFFINIGPTLESKIPKGTQDPLSYITLQVNSNLSTFVPPTDAEITDIVKNLKDSAAGHDEISPKVLKLSLPYVIAPLTHILSLSLQNGIVPHPLKVAKVTPIFKSSDPLNVNNYRPISVLPCISKVLEKLVYSRLLKHLNQNNILYKHQYGFRKGYSTSLALIHLMEKISTAIDNSEYTIGIFLDLSKAFDTVNHSILLNKLKRYGICDSAIKWFSSYLSNRQQYVALNDNKSQPKIIECGVPQGSILGPLLFLIYINDLEKASSIIFFILFADDSNLFLSNSNFDTLVKLANEEMKKVMSWFEANKLSVNVKKTYYLIFCNRNKTYNKSAKIFLKSVPLSQESQAKFLGIIIDDRLTWKSHITMLGKKISKTIGIIGKLKHILTQKTIITIYNSLIYPYLTYGNIVWGCAYKTTLQPLILLQKRFVRSATGASFHAHSAPLFTKLKILNIFDINRLHLMLFTFKFLNCSLPETFNGLLNLNSHFHNYQTRQSAHFHIPLVRTSVAQMSVKYKCIINWNNLPLHLKCLTSIISFKRNLKNHLLSFPTDI
>Crack-3_CP_gag#LINE/L2 382-1425 [Culex pipiens]
MSAEPSICAVCKVAEPEATKIVTCVNCYKSEHTECKGVYGSSAAALRAKPYFCSVQCCEIHHRCQNSTLFSGIDDKVMSEILIEVRKTNTEMHDIQQTMGELKRFNTYVGNQIEVLVTEIKSVKRDYVKVKQDVGYLQSDQKQTNETISDLQLSLDRVNRAALIKNAVILGVPTTQTEDTKQLVRQIAAAVKCQLPQDAIVEATRLVSKDPSQRTSKSVPIRVVFAEEQHKEDLFAKKKNHGLLFTSALGAGSGPATNRIIIRDEMTSFGMKLLKDVRSLQEQADIQYVWPGRDGVILTKKSSDSKVEKVRSLLDVRKLQQSKRSRDESLLHSTDLSMSILAEPDPKR
>Crack-3_CP_pol#LINE/L2 1486-4383 [Culex pipiens]
MSMYCNIEFECMQQWIVNKFCTDVVSLKILQLNIRGMNDLAKFDGVREMLQQYGERIDVLVLGETFLKADRTCIYNLDGYIATFSCRNESSGGLAVFVRNDIDMDVLENRTADGFHHIHCQLRSLNKRIDCHAVYRPPSFGATRFLDEMDQILSKTKNGHDCIIVGDMNIPVNKPSINIVQQYSHLLSSYGMVVTNTFVTRPASGNILDHVICDEKLSHSVTNETIPSDLSDHCVVLSTFRRAEPILKRTLEKQIIDHRRLNQLFFDRITTLPQTLTADQKLSHVINCYNTLLPQCTRTVKAQVNIKGHCPWMTLHLWKLIQIKDNTLKRKRRNPNDAHLSELLAHVSKKLQKEKAECKRNYYSNQLSSGDQKASWKVINEAMGKNSSRAYPTELLINGNKTTDSNQIAQHFNDFFSNVGPNLAATINSDREVHKFGTLSALPEGNSLFLRPASINETIALINALNPKKSPGPDGIPASFLKANFVFFAHLLTDVFNEIVETGVYPAVLKVARVTPVHKSGDKKEANNYRPISCLSILDKVIEKLIVSRLVDFITQHKLLYAHQYGFRQGLSTLSASCNLVDDIYDSLDKRELVGALFIDLKKAFDTIDHRLLLEKLETYGIRGVAKAVIESYLSDRLQFVSLGQVRSTLSPVITGVPQGSNLGPILFLLFINDIGKLKLKGTTRLFADDTSVFYHGKDCALIQRQITQDLELLDDYFQTNLLSMNLSKTKYMLIRSPRKQLPARQPIVFNGQQIEEVNQYPFLGLTLDDTMSWLAHIDLLKKKLAPICGILWKLSSFLPTSCLKKLYFSLVHSRLNYLVTTWGLAYAVHLHDLQVIQNRCIKAVFRKPYLYPTSLLYSNPADSLLPLRALQKLQMLTHVRKCHLSTTTASTFPIREQTSENDRATRQLGDFILPLPRTEFGMKRVAYVGCKLHNELPTVCKNASQGAFKLSLRNHIKSKIIDYLV
>Crack-3_CQ_gag#LINE/L2 773-1531  [Culex quinquefasciatus]
MSLNLAELPELIASMRKDSSNCLKDVVASQQFLSNKFEEIVGHMKLLQNQIQLLRSENHCLKQSIKNLSENAKSITQVVHQAELDIDCQQRSELSTNAIILGIPRTAQENTDDIVLKTCEALGYSTAKHDMVSCCRIPCAKSENSPIRITFKSAHCKEKLMEHKKQYGTMDISAIQNQKLPMGTQGRVVIRDELTPLSRRLLQELKGLQAALDLRYVWPGRNGAIMVRKTEKSKAIPILSRHDIQKLLQTPKK
>Crack-3_CQ_pol#LINE/L2 1569-4472  [Culex quinquefasciatus]
TTISATHYATNAYVGNPLNLSLPASSNVIKILQINIRGINRFEKLDSLCLFIRNLNTVVDVIVVGETWLKEARSQYYNIPDYQAIHSCRRTSAGGLAIFIRKELPFAVTANTTNQGYHHIAVKLHAGKNQVLIHGFYRPPDFDAVHLASSIEAILANADTADPCLLVGDMNLPVNNPEARDVQQYTQLLNSYGMAVTNSFVTRPSSTNILDHVVCSVANSSRVSNYTMDCDLSDHSYVLTVLKLKMEQERRTLTKTWTNYTAVNDEYRSFLQEYQLDLLVPNERLQAITERYALLTKKHTRTTTVEVKVKHNCCPWFNYDIWKLSNIKDKVLQKWKANRLDEVQTELLARANLKLNEAKRKAKANYHSRLFCTSNPKLLWSRINEVLGGKSKANSKVQLEVNHEIVEDPSSVSNIFNDYFASVGVNLGSQLTSDGNIHKFGTMKYATRSLFLRPVTSLEVQNIIFALDPKKAQGYDGFPVAALKRHSTLLASVIKDCFNECVSQGEFPACLKRALVHPVFKGGDPTNPSNYRPISVLPVLNKVFEKLLFARIYNFLIATEQLYRHQFGFRKGSSTEVAILELVDEVSKTLDDKLSAGSIFLDLSKAFDTINHQMLLKKLESCGLRGLPNALLQSYLSDRIQQVVVSGIRSEIQFVRCGVPQGSVLGPLLFLIYVNDMSKLQLHGKTRLFADDTAISYACPSPVVVVQQMKEDMELVFNYLENNLLALNLSKTKMMIFRFLHSQLPEYPSLSVRNTVIEEVACFKYLGVYLDNRFNWDNHVRQVIAKCSSLCGILRRLSRSVPHHVLLKIYLAYIHSRYRYAIAVWGSCPKVYLKELQVQQNRCIKAVYKLPFLHPTRELYSMPQHKILPMYGLYTQSVAVIMYRILNNVNIHHNWEFEAAIHDHYTRGSTDLRRTGFRTELGRRRFKIRGPTLYNELPENMKEALTVNEFKRKLTIYTRENLNNFIVR
>Crack-3_HM_gag#LINE/L2 192-971  [Hydra magnipapillata]
MAVTLKEIKKMMKEMLNDFKKETLVLLKNQEKTVIDIISANTKILNERLDKFEKNITQNANKIKKIEIELEDIKESLNFNEHVIDKKIESNNKHFLNKIDINKQLEKERTNNEFLNEKIRNLEDRSRRNNLRIEGICEDEVESWDKTEEKVHSFFLQKLGIKSIEIERAHRTGPKKDGRSRVIVLKLQQYKDKAKILKESARLRGTNIYVNEDFSRETVAIRRKLFAEVKERRLNGENVSVRYDKIISFKTNILKNVPNK
>Crack-3_HM_pol#LINE/L2 1023-4544  [Hydra magnipapillata]
MAFMNDFESISFNFFEGNHFSSDKNIDPDNNFYYDTFTDCAYFYPKELEGFLFQNAIKKSSNQIRILHLNIRSLNRNFEKLLNLLEETKNLFNIICLTETWVTLNDFDNNFNIPHFKIISQERKTSKRGGGLLIYVHESIFYNMRNDLSVSDGDKEVLTIELLLEKTKTFILSCCYRPPDGVSENLSMFLQHIVNTSDAEKKKSFVIGDFNMNCFLYNDEYKVKKFYDTIFETGSIPLINRPTRVTINSATLIDNIITTDIFNKDIQKGILKTDISDHFPIFLIINSNLEKNINTPTVVRKRVFKQKNFELFKDQLSLLHWNHIDFNDNANNIYEAFYKTLFSVYDANFPIVEKIIKINKSSKSPWITKGLKKSSKIKQKLYIKYLKTKTSASEKIYKNYKYLFEKIRKNLKRNYYSELINKFKNDLKRTWQIMKEITGKQKSCLGFLPQMIKVDNISLYDPRAISHEFNKFFIGIGPSLSNRISNTTASFNDFLVPMDNCICSDELSSELSFEEFEVALNSVKRNKATGADEINGNVIIDCFDILKHILFKVFRASINQGIFPEQLKVAKVTPIFKEGDRSNISNYRPISVLSVFSKILERIMSNRIYKHLNKNNLLYNKQFGFKKDNSTEHAIIQFVHEISKSFEKSQYLLGIFIDLSKAFDTVDHHILLQKLEYYGINGIALKWFRSYLTKRKQFVISNDGYQNNCLDIVCGVPQGSILGPLLFLIYINDLNKASNLISIMYADDTNLFLSNSNIYELFTTMNKELKHISNWFKCNKLTLNINKTKWTLFHSHAKKRFLPINLPQLFIDEIEIKNDSVTKFLGVYLDENISWNQHINYISTKISKNIGILYKARNYLNKNCLKQLYYSFIHSYINYANTAWGSTVKSKLKLLYRRQKHAIRIINYADRFTHTKPLFTEMRLLNLFELNVFKVLCFVYLWRNNQSPTVFNNTFKLKPNNKYDMRNINFLKEPFCHTKFNQFCIAYRGPHLWNNIVLLYKARNYLNKNCLKQLYYSFIHSYINYANTAWGSTVKSKLKLLYRRQKHAIRIINYADRFTHTKPLFTEMRLLNLFELNVFKVLCFVYLWRNNQSPTVFNNTFKLKPNNKYDMRNINFLKEPFCHTKFNQFCIAYRGPHLWNNIVLQNFDLPTSFYLFKLNLKKCIISLDNILRYF
>Crack-4_BF_pol#LINE/L2 58-3195  [Branchiostoma floridae]
MTNNLLSKTIMTTTSDQPSDQPLHETSNCDLSSLLFNPFDLNENVSESPYSSYDPDVNFFSYYHSSFKNTTQYYNSDSLNTCLSSKSTSTSLSMFHLNVRSLPRHFEELNEYLYTLKHRFSAIALTETWLTDINCQNYNIPGYKSIHHCRQNKLGGGVSLYIRDDLSYTERKDLEFEIDESGTQCIFIELCSSRDEGKKVIIGCVYRPPNTEIQQFNDQLTECMSKINKEKSTCFILGDFNIDLLKTSHSPTNDHINNLFSSSFFPLVYKPTRITTHSATLIDNIYTNTLNSNLRVGIMVTDISDHLPIFLISGIEEPLNNDTWYSYRQINETNKEKFIESLTRTTWDPVLEETDTEMAYEKFLTTFTLLFDESFPMKTAKIGQHSRRKPWLTRGLLKSIKKKNKLYVKYVKNPTPLSESTYKVYKNKLNHTLRTAKKNYYHRKFTEASKNVKQTWNVINDLLNRSDKSKAAPHKIQTGARSITDKNKMCEEFNDFFVNVGPTLESKIPIVAKDPLDYIKTHLNRQLTSFEPPSTAEILDIVRNLKDSAAGHDGISAKIIKISLPYIICPLIHILTLSIQSGVVPKSTKIAKVIPIFKSNDSTSVSNYRPISVLPCISKILEKLIYNRLLKHLDQNDILYKHQYGFRRGFSTSMALIQLIDKITTAIDNNEFTIGIFLDLSKAFDTVNHSILLKKLNKYGINDTALKWFKSYLSDRKQYVTLNGYTSSCKLINCGVPQGSILGPLLFLIYVNDLAEASKIFFFILFADDTNLFLSHADYDSLIRLTNQELEKVITWFETNKLSVNIKKTYYLIFCSKNKTYNKKNTNIFLKNLPLSQECQAKFLGVLIDDRLTWKPHIAMILNKISKTIGIIGKIRHLLSQRTFITIYNSLIYPYLIYCNIVWGNAYKTSLHPLLILQKKFLRIATCSSFYTHSSPLFEKLRILNIYDVNRFQLALFTAQHINHTLPDTFDSFLNFRSQFHNYQTRQSTNLHIPLFRTSLAQMSVKYKCVKIWNDLPPSLKNLTSSLLTFKRNLKIHLLIHPSPL
>Crack-4_CP_gag#LINE/L2 223-975 [Culex pipiens]
MSNRRSNTAKAGKESKSNGDVAQQLEEISAKLSKLDELEKLNRDLLGQLLKLSHRVTEVTVENRLLRQEIEDLKQERLQEEVLIKGFKLQGPEHHQEVFHKVCEVIGADVAENVKEVRPLIFKQNRKTDAVLVKFWRVGDKHQFIQRVRALKRPITPGDLNIKSINKFVLIQDHLTPEKQRVHRLTWELCKLGLQKPWFYKGSTWVTHPETQKRLRVADSKDVDELQFLLVTQGKVNTNSNLDNQVTVSDD
>Crack-4_CP_pol#LINE/L2 979-3960 [Culex pipiens]
MEDIEQYLDFQHNNKYFDKIDDYDREFQNFNGISILQVNTRSINKIDRFDNLKTQISKLIFKPQIIVVSETWIPINLIQLYNIDGYESFFSCRRDGRGGGLAVFVSKKLNFSVTVNQEVFSNSNSFHFLQLIVTGSSNKSLIISAYYRPPDDTILTDFLQHLDNTLDSGDSAHVVVGDINIDSNSSSRKLDKYLNIISSFGFAITNTNLTRPSSESIIDHVLFNYHDNFSIINDTIYNPDSDHNFIISSIDFTLNNNPPDIRYKLHTNYTKLQQLLEMRFSPAYMGNYEDPNAFYDYFINTLTKSISESTTKYLIKNKTSACPWVNDNLQSLYNSSRNLKKKKNKLLSQGKNVDHIEIKIEALSDKIKNCSSILYQNYYTDKFSGSKSTKDIWNNINDVLGRKHKDKIPKTMTKLTDSGVKVTIDSQQTIANEFNSFFTSIGKSLANNIPKTLNDDINKFRTLKNCQRSFNLEPTNEYEIINLIDSLSNNTSCGHDKISAFILKKVKLIIAPILTNILNLSMVNGFYPDQLKIARVTPIFKSGSNSLFNNYRPISVLSSINKIFEKILFQRLNHFLISTKFFCTQQYGFRQKSSTTNAVIDLVNKIQRHLNDKEDVLGLFLDLSKAFDTVDHNILLAKLERAGVRGIPLDLFKSYLSNRSQFVSFDGIKSNIKFIDVGVPQGSVLGPLFFIIYLNDLAFLSLKGKLKLFADDSSFLYNNKSASVNDKNLHDDLKTLVEYFRINKLTLNINKSNIINIKNSNRSIPNRLTLTKNSFPDVKVIDECKYLGIILDNRLNWSPYINSLLLKLNKITGIIYKIKHKLPLSVLLLIYHSLFSSHLSYITAVWGNACNILINKVQIAQNKFLRIIFNLPIRSHSVDLYTKFKNIYPVRGIYIIQSCCFIYSCLANQTHSNTKFEPSTHNHFTRNHDSLQRPNVSTLAGERSITFKGAQLYNFFSNKFGDCLSLSIFKKQLTNFLSEPAILEKLLKTYDFHI
>Crack-4_CQ_pol#LINE/L2 3-2858 Fragment [Culex quinquefasciatus]
NFEECIMNKSVLNHKSAVKIFQWNIRGMNSLEKFDGVRELIDRYGDPIDVLVLGETWVKEGNQEMYNLAGYKSIFSCRARSNGGLVVYVRSNINAKIVDIQSHNGFHLIHLLLSLGKMKLNLIAVYRPPGFPSGDFLDKLEAKLGVLQSDQEVILLGDTNVPCNVEANSTVQEYVRLLSSFNLQVTNNITTRPASQNLLDHVVCSTGIPGRITNETVETELSDHSMILTSLEMKVEKVAKTLTTDIVNHELLDELFARSITQFPGEVSAAERLLFAINQYKEALESATRTVTVKAKVKGNCPWMTLELWQMIKIKEQVLKSSKQHPSNAHLRELVKHTSQLLSKRKAQSKRNYYYNLITTSTPTNSWKLINEVLGRSKKKDSEILVRDQSGVLKDNIQAANXLNKHFCEVGENLASSIPSDRNVNHFRTLTRHDLTIYMRPATSQEVIVLIGQLNPKKSPGPDRIPASFIKKHHLLFAELLKDAFNEMIETGVYPDFLKEARVVPIFKSGDPTDVNNYRPISTLSMLNKLLEQMVAARLSSFLDTHKHLYNQQYGFRKGSSTLTATCELLKDIYDSLDERKFCGALFLDLQKAFDTINHELLLQKLEFYGIRGKANSLLRSYLTNRMQHVSVNGTRSESRRISTGVPQGSNLGPLLFLVFINDLSRLQLTGKIRLFADDTLLLYSSRDCRTIRNNMLEDLTILNQYFASNLLSLNVSKTKFVMFHTCQRRVPELSPIRFGNQVVERVSHFKYLGLVLDETLSWEAHIQHLKRCIAPICGVIRKLASFIPSVWLLKLYFALVQSRLQYLALNWGTAAAFRLRELQTLQNRCLKSILAKPYLYPTRQLYIDAPETVLPVRGLHMQQTLVHMWNMLKDDATHHNLEFEIINSMTRQNGDIRIPRSNTELCKNRVTYVGSKLFNELPNDLKELNSKVVFKKNLRRHIKNNLLNALS
>Crack-4_HM_gag#LINE/L2 165-907 via tfasty with CR1-21_HM_gag, 1 frameshift. [Hydra magnipapillata]
MVMMRKLLNLQKETIILSFFTETVNTINLKFESVQKNIQDVKKDLDDIKAGLTFVGDACDDKVKSVNEKIDKVKEELSSVKIIQGKISTDNNDLKLKSVDIEDRNRRNNLRIDGLSESSDEKDWEKTKEKVNKLFAENLNIKREVKIERAHRVGVLNNNRERTIVLKLHDYEDKKVITDNASKLKGTNIFINEDFCSTTRKIRKELFAKAKIHRQNGFYAKVVYNKLIVHEFRQNKCASTENVIPRDK
>Crack-4_HM_pol#LINE/L2 956-3978 via tfasty with CR1-21_HM_pol, 1 frameshift. [Hydra magnipapillata]
MDSNNIFQQGFENIIFDPFEDNLKNITNIFQETQRNLMKTPYFDPYEFKGKKKHNSFSILQINIRSINQNFDKFKEFLNIINYTFDVISLSETWHENTLDSNFIYELPNYKLISQPRESNKNGGGVGVYVLNKYSFKIKNKLCSSNLNYESLFIEIINDKDKNILVGCVYRPPSGKIKLFEEFIKNTVSKINKEKKKLYIAGDINLNALTYKNNPKTKSFFDMLFKYNILPVINKPTRVTKSSATAIDNIFINNYIETSFETGIFKTDISDHFPIYVKINPFKAPSNGDPKVITLKKRNLSEVNKNNLSDKLKQETWNQVFNCDNTNKAFNIFLNTFLDIYNETCPYEFKITKKKTILNPWMDKTLIKCSRNKQKLYNKFLKNRTEVNEKSYKKYKRFYENLLKKAKKTYYSKEITKXKFDVKKTWDLINDIMGRKKINTAILPQRININKTDIYCPLQISNELNKYFTNIGPNLAKKIITTPNSFQKYLKSLNGAMLQDREFSHEEYEIAFSFLKKNKSPGFDDVSSNIVISNKKYISKPLFHIIKLSIKEGIFPEALKLAKVCPIYKNNDQSEISNYRPVSVLSVFSKIFERVIYNRIYNHFNENNLFYTKQFGFRKKHSTEHAIIEIVDQITKGFENNSFTLGLFIDLSKAFDTVDHLILLEKIKHYGVINKTYDWLKSYLTERKQYVISKESGQLNILCGVPQGSILGPLLFLIYVNDFNNASAKLNSIMFADDTNLFLSNCDINQLYSDMNSELMNVDEWFKANKLSLNVDKTKYTLFHKKSQDEKLPLKLPDLILNDALISKNDSIKFLGILIDENLSWLPHINYIQSKISKTIGLMYRICPYVTSESLKLVYFGLIHCFIYYANITWASTQQKHACRLXYIFYKKXYEHAKPLMEDMKMMNIYEINIYQHLIFMYKCNNSLIPKNFNDKFTXNVNKKYSLRINQWNTYKLPRINSKYSEYGISYRGPKLWNTFQKTKNLNTVKSLNSFKFIIKNEIFKLDK
>Crack-5_BF_pol#LINE/L2 3-1649  [Branchiostoma floridae]
IITENVEICNECNKFFVDIGTYLANNITSTKQDPISYIKAPTNCSLSLFEPTTNKEVEDIVLNLKDSAAGYDEIKSKALKSALPYILTPLTHILNMSLQSGDVPNGTKIAKVIPIFKGGDSTSFSNYRPISVLPSISKLFERLVYNRLLKYLNTNNILYKHQYGFRKGISTPLALIQLIDKISTAIDKNEYTIGIFLDLSKAFDTVNHTILLRKLAAYGVTGTALNWFQNYLNHRKQYVTLNGIKSTYKEIQCGVPQGSILGPLLFLIYVNDLAEASSILYFILFADDTNIFLSHKNFDSLIQLANQELRKVATWFEANKLSINTKKTNFLIFCSKNKSYDINKAKIFLQNVPIKQEKQTKFLGVIIDEKLNWKAHVSAVSKTVAKTIGVIGKIKHNIPLKTLSTIYNSLIYPYLTYCNIVWGCACHTTLHPLTTLQKKFTRMATASDFLSHTAPLFLKLKILNVFDINKLQISIFTFNCLSNNLPDMFKTFLNPNSHVHNYHTRQRNLLHIPLFRTSLAQSTVKYRCATIWNSLPTNIKKHFFPPYI
>Crack-5_CQ_gag#LINE/L2 358-1440  [Culex quinquefasciatus]
MIGGSMETDDSVTCCVCSEEENDLTAVITCMYCFSSSHLKCRGITNKSAHRMREKPYFCSTKCADIYQKITEMQRNDKSLISSISSQLNATVTKVVETQMKQVKAEVKSVTTAVESSQNFLSEKFDKIVSDFNEMKSDNTRLNLEVDLLKRSHSDLAGTVYKLESSVDKSNKLAVSHNLIVLGLPSSANENIMNIVNKTFACIGVDVASVSFTASRLYSEPKNSNIVVPIRVIFDEVTMKDYVLDKKREFGQLKSNVINRTLLLNGNATNIAIREEMTPLGLELLKEMRDNQKSLNIKFVWPGRGGVVLVKKTDDSPTEKIANRDDLNRLIARYKNINRPCSDSSSXGQEQQEGKKRKVKK
>Crack-5_CQ_pol#LINE/L2 1488-4376  [Culex quinquefasciatus]
MYNEIKNFSHDNIEDFNASYSLNENKFLKILQWNVRAINDLNKFDDILQTLDSSKTSVDIVVLGETWLKNDFCALYEIPNYNSFFSCRDQSNGGLAVFVHKNSTSKLLKNVCIDGFHHIQIELIIKGHFYHIHGVYRPPNFDYGRFADYLENILSCTPVNYSCIIVGDVNIPINRALHNISDRYLRLLESYNYICSNTVPTRPLSGNILDHVLCKVDDSCCLRNDTISHYLSDHSPIISSFKLPIDKEKIKLSKTIVNHRKLNNAFDNFINNFDHVTDVSNSLLLITSTYNSLLEKNTRTVEKSITVKGNCPWMTFDLWTLCKIKNNYIKRVKRNPTNQHLKDMLNHISQKVDDTKTKCKKLYYEKLLNVTNHSKLWSNIKVVFGVGKKNNKICLVNNGTRTNNDAEVCEVFNNFFSNIGSQLAANIPRNLNSNPINNLSRIDHTIVLWPSNENEVITLIKSLKNKKSCGPDNFPVNILKRNCGIFAQILSQCFNLMLVTGEYPECLKIAKVIPVFKAGDPDDCNNYRPISTLSVFNKIFEKLLVNRLVKYLSKRKILYKFQYGFRQGSSTQTAILELVDDIIKEVDSKKSVGALFLDLKKAFDTLDHSILLKKLEMYGIRGLANDLIKSYLSNRKQFVAINDARSSNQTIGVGVPQGSNIGPLLFLLYINDLGKLQLCGTPRLFADDTALFYPNKNINTIIESIEADLGVLKNFFDANLLSLNLSKTKYMIFHSIRKVITEHEHPRLGNQEIEKVNCFKYLGIHLDPTLSWAYQVNHVEKKLAPLCGMLWRVRNFVPRHVLLKFYFAYFHSQLNHLVSTWGYASSTSLKKIRTLQNRCLKTIFYKPLLYPTLQLYSELSHTILPLNYLRDYQTLVFVHNLLNNPVMHHNITLPSAPHFHSTRQNDHLRREQASTNLGQRRISFIGPTKYNTLPLDLKQTTSTSIFKIRLKQHLKHKLHELFQ
>Crack-5_HM_gag#LINE/L2 194-927 via tfasty with CR1-27_HM_gag, 1 frameshift. [Hydra magnipapillata]
MDLSMKNIEKLIISKLEDQKQNILKETEKLLKKQEETFTKIMSSNIKIISDRLDKLEKELSFNKSRVEILEKDTSDIKDSINFQEENIKEMLSQLNLKINEEINTLKEKYIDLENRSRRNNLRVDGVAELSSETWDDCARAVKKIFKNQLGIADDIVVERAHRIGRVKDKLPRTIVLKLLNYNDKCKILTSVKKLKGTGIFINEDYAKETLEHRKKLWEEVKRHRKEGKYAVIKFDKIFVKDMHN
>Crack-5_HM_pol#LINE/L2 977-4047 via tfasty with CR1-27_HM_pol, 2 frameshifts and 1 stopcodon. [Hydra magnipapillata]
MAEISNFKHQAFNFSKMKTLIDPNYSHDLNNDCFYYYPSEIEGSLFNFNNSEQIKILHVNIRSISHNFEKLLYLLEETKNVFNIICLTETWINANDLSNNANFYLPRFELISQERHTNKRGGGVLIYVKETIAHYVRNDLSVSDGDKEILTIEILNNESKNVLLSCCYRPPDGLSENLSTFFEQMLSKxALKKKKKFIIGDLNMNFLNYENDCKIKKFYDLIFEIGAIPLINVQLINRPTRVSANSATLIDNIITTDVFNNNIQKGILKADITDHFPIFLSFNSNSKIKTKTNNKISKRIYNINNIEQFKKQLSLLHWKHINFNDDANKIYENFFKTFYSVYDANFPICEKTINQKSLNVPWITKGFKKSSKIKQKLYINYLKTKTSLNEKLYKDYKHLFEKIRKNLKKNYYSKLIENVKNDSKRTWKILREIGGKQKTCSGSLPQVIRVDNKDIFEPRLIAHEFNKFFIDIGSKLANKIPNTQVVFNNFLTPMDDCICSNNLSSELSFEEFQVSFKSIKKNKAPGADEINGNIVLECFEQLKDILFKVFRASIQQGVFPDKLKIAKIIPIYKEGDRTNICNYRPISILSTFSKILEKIIYNRLYTYFKEKNFFYKNQFGFKKNSSTEHAIIQFVREISNSFKNSQFTLGIFLDLSKAFDTVNHGILIHKLKYYGVDGVILKWFKSYLTNRKQFVSFNDPYQKNVLDISCGVPQGSILGPLLFLIYINDLHKASNLLSIMFADDTNLFLSDNNINKLFTTMNEELKIISSWFKCNKLTLNIKKTKWILFHSITKKRYLPPTLPDIFIDHIEIKRDCTTKFLGVFLDENITWKQHIDYVGTKVSKNIGILYKARIYINKKVLSQLYYAFIHSYMNYANIAWASTEKSKLQSLYRRQKHAIRVINFADRFSHSKHLFSEMRILNIYELNIFNILCFVYICKNNLSPAVFNDLITLKPTNKYSLRNNNLLYEPFCRTSFNQFCIDYRAPHLWNKIVLPNFNFDLPTSLHLFKVKLKNLFLSRIIKI
>Crack-6_BF_pol#LINE/L2 20-3016  [Branchiostoma floridae]
MDHQSYCNLANSHEYWYCNQCLLPCFSDSFFNSSHDSTMDSSGEDNVDVCPSSCHMVPPTKGLTMGHLNICSLYNKLDQLRVFMTSNNIDVMTLSETHLDDTISDAELHIAGYYLYRLDRNRSGGGVAIYVSEAFTHSRRSDLQQPGLEALFCQINLPCTKPIIAGSVYRPPSAPVEFYTLLDNSLETLSLTSPNSELYLLGDFNVDLTQPRKPPSKALTNLTEKYQLRQLINEPTRVHQYSSTLIDHIYCSDMHYVNTSGVVQCTISDHYAVFCTRKAARRHSGVKYVSSRKFTKFDEQNYLADLSEIDWSPLYHADSVDDAWTFFKSSFTTVSDLHAPFITKRTRDKQPEWLSPNIRKQMLVRNDLKAKARKTGSDVDWECYRAKRNMVNKMVKQAKAKYCQNKLEENISDSKKLWGTIGEILPRKSSVVTKTLTWGGQQLVGLTNIVKGFNEFFATAGCRLAQCFGAYTHTPSCPDLYKDLESTFKFTPLNDQDVLCHLKALPISKAPGLDNIHPRLLKAAAPIITIPLTYVYNLSLSTGTIPTEWKTARVTPIHKGGDQADPNNFRPISVLPILMKIFEREVHKQFLAYLHAHNILSPSQSGFRPGHSTATTLLDVSDYILHNIDNGNLVGTVFLDLKKAFDTVDHNLLLTKLTWIGLRGIELAWFQSYLSNRHQRVSLSGHTSDSVPINIGVPQGSILGPLLFNIFINDLPESITNCKVSLYADDTAIFCASNNPNHIESMLNAELSQLSTWFHNNRLTLNISKTKWMLMGSSKRINNCHDLEIKIDDICLEKVTSYKYLGVILDSCLTYSNHVDMMHSKASQRIGLLRRLRPYLGTNVANMLYKAIVLPIVEYCDVIWDNSSSTLKQRLQILQNRAARIILRRDPRANIEELHHTLQWRYLQDRRTQHLCIMVYKCLHGLAPSYLINTFNYNNQIHSYNTRQAQQLHRPKYTSRTGQRTFAFRAVSIYNSLKPTTTSQTTLNSFKRALQSDL
>Crack-6_CQ_pol#LINE/L2 3-1592 Fragment [Culex quinquefasciatus]
SQKTFLLLPTDQFEIITLIDSFDNNTSCGYDKISSSILKKVKLIIAPILTEIFNLCMLNGCYPDKLKIAKVTPVYKSGSASLFNNYRPISVLSLLNKIFEKILFTRLNNFLCLNKFFCAQQYGFRHKSSTKNAVIDLVNKIQTHLDQKDDVLGLFLDLSKAFDTVDHKILLTKLNFAGVRGVALELFKSYLNNRVQFVSLDGIDSLTALINVGVPQGSVLGPLFFLVYLNDLALLPLKGDLKLFADDSSLFYFNKSMVINDINLNNDLRLLTDYFRLNKLTLNINKSNIINIKNSNRSTVNPLTLTRTNFADIKIVDECKYLGVILDNKLNWSSHINNLLNKLNQIIGIIYKIKHKLTANVLLIIYHSLFNSHLSYITSVWGNSCNILINKLQIAQNKILRIIYKKPLRSHSADLYNINKNIIPVRAIYVIQTCCFIYLCLHEQTHSNTKFKLSNHQHFTRSHNLLDRPNISTLAGERCISFKGAQLYNYFWNRFGDCQSVSIFKNKLLSFLNEPAVIEHILKSFDFLVT
>Crack-7_BF_pol#LINE/L2 2-2992  [Branchiostoma floridae]
LANSDDYWYCNPCLLPCFSDSFFDSSCNDCSGDSVTANEEEISESNSMIPASKGLIMVHLNICSLYSKLDQLYVFMSTNDVDIMTVSETHLDDSIHDSELCIDGYHLYRQDRNRSGGGVAIYVSDKYSHTERTDLKQPGLEALFCQVQLPSTKPIVIGTIYRPPTSSVEFYTLLRDSLETWSMSTPKSELFLLGDMNIDISQPCSSAVKHMDNLSQEFQLQQVIDKPTRVHQHSSSIIDHVYCSDMHRVSDYGVVHSTISDHYAVFCTRKARRTKSVSKYVTSRKFTNFQEDSFLTDLRALNWDSVLQATRVEEAWSLFKSLFITVSDVHAPYISKRTKTAQPKWLTPDIKSLMQVRDDTKARARRTGESKDWEDYKAKRNYVNKRVRLAKASYCQQKLEENLTDSKKLWATIKEVLPKKTQAVTKSLRWEGKHILDLPNIANCLNKFFVTVGNKLAEKFKHQATVPKCPARYKELKTTFNFKQISEVGVYEKLRGLHSNKATGLDRIHARLLKVAAPSICKPLTHIFNLSLSSGHIPTDWKMARVTPLHKGGDTEDPNNYRPISVLPVIMKAFEREVHTQFVEYLHQHNILSTQQSGFRTGHSTTTTLLDAKDYVLHNMDRGNLVGAVFLDLKKAFDTVHHGLLLTKLSWIGIQGVEHLWFSNYLSGRQQIVSLNGCRSEYLPVTLGVPQGSILGPLLFNLFINDIPDVVTTCKICLYADDTAIFYPSNNVKHIESILNYELSGLATWFQTNRLTLNVTKTKWMLFGTANRLKQAQSLTVEIDQEIIERVHTFKYLGLYLDSHLSFNEHIDKVCSKVSQRIGLLRRLRHCLTFSIADMLYKTMILPIFDYCDTVWGTCGATKQRQLQILQNRAARVVLQRRQRDISTVNLHQTLNWKYLADRRFEHTCIMVFKCLTGLAPTYLSATFQHNSRIHTYNTRQTTKLHPPSYTTTCGQKTFAYTGTSQYNKLADNIRNITTLKGFKTALKNICISDLK
>Crack-7_CQ_gag#LINE/L2 7-972  [Culex quinquefasciatus]
MATETAKVCVKCKKNINARHGKPLQCDGKCRQVWHKACTSVSDEZYPVPDKFWFCAPCKETRNRNRRSTINMADRTPSTPSTAKAGAASSTTEAAIVRIESKLDQLIGWQKDVITEIRGIQNTLEELRTTTETLMDEQQQLRSDNFELRRQLELNEIEIDQLRQEKLXKTLEISNVPVAEDEDLFDKVTQICHGIGVVLDISEVKEIFRAPTYQSQKSQIPPPIQLKLSSKKKRDELLAKKREKKELTTAILDKGTDKPVNIYISEVLTKRNRYLFKLARDLRRSDRIKFAWFRDGRLLVRKTEKAKVKGIRSVAALDEFTK
>Crack-7_CQ_pol#LINE/L2 959-3829  [Culex quinquefasciatus]
MSSQNNPNLQLPFQPSTKTINTIKQLKFNSENSLKLFYFNARSLNDKLTELEFLLDEANCRMDALMITETWSRPETEQSMCLSNYQCFFASRSTRRGGGSAIFIHNDIHCKPIHNYCDEHNSFIAVEVGDREKTVLVCVYRPPEPLSSSLDCFFQHLDTFLAAQACRTTIVTGDFNLDLLTTTTAVQRYTNIVLSNGFIFCGHRPTRFEACLDHILTNNTELQVTVQQLQYNLFDHDAMFIEATRTIDCISSGRVSFTKTDVNKLRLYLQQHPPNTSMQFSVEENYNVLLSQLRSGIEASSTQVRSRGTKQTHSKPWFDNELKQCIRTKNYWYGKHRQNIADHVTRDTYHRWANTVTSLKRTKRKHYYGAKFERQQSSITGTWDVVREVLGSRRKSGKGISSRFSSTDEKQRCVEDANTYFAAAGKHLAENIPYTAMQPINPQTDQLLVLEPVPRTIVLQTIASLPASKSTGYDGCQPNFFKACGEILADSVADVVNTSIRQSLVPNTLKLSKVVPIPKTPAARNVSEFRPINIPSVTDKVLQKIVNKQLTEHLERNHLLSPRQYGFRPKSNTQSALFDAVVEIQRNCDRKLKVAAVFLDLSKAFDTCEKRILLRSLSELGVNGQSLRWFESFLGERQQYVCDNGLNSEPLFVDYGVVQGSIVGPTLFNCYVNNLKDLPLHGTLFMYADDIVLVYAASTYEELQSRMNEDLCHLCRWMNQHKLTVNIPKTKYMLFNAPSWTRLDVVYNGECIDYVDAFKYLGVWLDSGLKWTVHIEKLNKTLAQVAGVFKRVSSVLPTQTKRMLYFSLFYSHLIYGIAVWGTAGSTALNLLQTTQNKAIKNLFGYHYRTSTALIHSNNRFLSVSSTYTAVACCHVHKIQRNCIHTNTVLSRGEDRHQHYTRRRGDFTASRINTTTFGQNSALHRATLMYNALQDDMKTLHPARFKKVLQNQLLEEQF
>Crack-7_HM_pol#LINE/L2 108-3360 via tfasty with CR1-42_HM_pol, 1 frameshift. [Hydra magnipapillata]
MAIKFPCGICHKSVKKNHRALQCDYCDTWIHIKCNRIDNKTYNSLKTESGSWYCLICLENTXPFSSLIDSEFQLTINDINGLSYNSDDEIQTNLKNPIKNFKNFNNNKIKCKYYDTXEFNRVVNKDCNVFFHVNISSLAYYIDDLKCLLSLINHEPSIIAITESRLIHGQLPKTNINLNGYSVEHCDSSSNRGGTLMYIKMDLKYKIRADLQIQKTKELESTFIEILRPGKKNIVIGCIYRHPCMCIAEFNNFYLQTLIEKVSIENKDIIILGDFNINLLNYDSSSDVSNFLDSMCSYSLFPFITQPTRITPQSKSLIDNIFLNFYKPNLVSGNLTYSLADHLIQFIAIPSKKFEKLHPKSYRRCFKNFDNKLFLDQLKVTDWDPVIKGANENISNSTTKFLEIINKLLDYHAPFKLSTIKIQKTLSKPWITSGIIKSIKIKNQTXKVYEYFQRFKSYRNQINNLIRYSKKLYYSKYFNENVSNLKNTWKGIKSIINLKSKNNHVIDSLTINNQNITDKKIIANTLNEYFSTIAENLASKIIPPKNDFSYYLKNCNPTSFYITPVTPQEIKDYISATNSKKGIGPNSIPSKILILASQELSYPLSVIINESFKSGIYPDPFKVAKVIPIFKNGSIQDCCNYRPISLLSNISKLLEKFMYIRLSGFLHQSNILYRLQYGFRKNHSTNHALIDITETIREALDQKKFAGGVFVDLQKAFDTVDHEILLSKLSHYGVRGTALQWFKSYLSNRSQFVEIANTSSSTKSTSTGVPQGSILGPLLFLVYINDLNTCIRYSRTYHFADDTNLLIVEKSLKKLNKYLNYDLSCLVQWLRANKISLNTKKTEIVLFKSRGKKIEKKLNFRISGQKLYIVDKIKYLGIILDENLXFNHQLKSISIKLSRANGMLAKVRHYVDYETLINIWYAIFGSHLNYGCQIWGQNYSVNKNNLINLQNKSIRLIHFQQNSFDLDILYSISKITKLDQMIYLLNSAFAWDVIHKNIPMGFNNYFKFTGNIHNHNLKSVSCNNLSIPSKQTYKYGIKSIKNHSIHSWNSLPSEIKKSTNQVNRNRFIKQAKEFIMKMQDDTTK
>Crack-8_BF_pol#LINE/L2 3-2588  [Branchiostoma floridae]
TERTDMTQPGLEALFCQIQLPFTKPIVVGSIYRPPNATVDFYSLLRDSLETWSTCTPNSELFLLGDMNIDLSNTDTSGARHITNLSQEYQLQQVIDKPTRVLQQSSTIIDHIYCSDLQQVCEHGVVHSTLSDHYAVFCVRKAKRPKSAPRYITSRKFSNFDENNFLTHLRTLXWDSVLQSTCVEEAWGLFRSLFITVSDLHAPYISKRTKANQPKWLTSDLQRLMHDRDSTKAKARRTGATVDWEGYKAKRNHVNKLVKQAKAMYCQQKLKENMSNTSKLWATIKEVLPNKNPVVTKSLHWGGQFYKDPSSIVSCFNNFFVSIGNKLAEKFTKQTGNLVCPDKYKKLTSTFAFKEVTEVTVYDKLRVLGTNKATGLDKIHSRLLKAAAPCICKPMTHIFNLSLSSGIIPKEWKTAKVTPIHKGGEKEDPNNYRPISVLPVIMKAFEKEVHGQFLEYLHHHSILSEQQSGFRPGHSTATTLLDVTDHVYQNIDSGNLVGAVFLDLKKAFDTVDHCLLLKKLSWIGVKDVELKWFTNYLSDRKQTVSLDGCVSDYLPVTVGVPQGSILGPLLFIMFINDLPDCISNKVCLYADDTAIFCSSNDTRYIEATLNSELSHIATWFQLNHLTLNASKTKWMLFGSSGKLKKAHPVSIKIGLESIERVVSFKYLGLILDDKLLWNEHVDKLCSKVTQRVGLLRRLRPCFTVNIADMLYKAMVLPLLDYCDTVWDSCGVGRQQQLQVLQNRAARVVLQLNLQSSSVLNLHEKLSWQYLAGRRRDHVCIMVYKCINGLAPTYLSSIFSHNHNLHNYQTRQTSLLYKPFFKTTTGQRTFSYRGAKHFNSLPAYIKQVQSLNSFKSALKDLT
>Crack-8_CQ_pol#LINE/L2 3-2870  [Culex quinquefasciatus]
XEWLISNTNLPHEESSLRIMQLNIRSMNNVTKFDSIKEVLHRFDRRVDIIVLGETWIQQDRVCLFSIAGYKSMFSCRNESNGGLAVFYRDELDVDECCNTIKDGMHHIQLVLKRGKPIDFHAIYRPPNFEARRFISEMEQFVSSSKPGHDCIIVGDMNIAVNQPSVNTVQEYTRVLESYNTYVTNNVVTRPMSSNVLDHAICSEALLDKVVNETVFHDLSDHCLVLSSFNLGCSTARTTLEKDIIDHRRLNQQFHEFMIGLPMEMSANEKLTAVITNYNNFVKQCTKTVTVQAKIKGHCPWIRFDLWTNMRWKENLLKRSRRNPLDEEVAGLLSHVSRMLQTKKDRCKKDYYQRLLSNTSQKNAWRIVGDVLGRNGVNDAPRSVYDNGGVTTTDMNKICQLFNEFFCSVGHKLAATIPSDRNICRFNTLPRRPDSMFLSPTTYNEVVSLINQLDTKKCAGPDNISATFIKVHYEVFAQLISDVFNEIIMTGQFPDCLKVARVVPVYKAGDKKDVNNYRPISTLSVLDKLIEKLIVCRVNAYVTRKTDDRPAILYSHQYGFRPGSSTLTATCDLVEDIYSSLDSKLLAATLFIDLKKAFDTINHDLLLQKLERYGIRGTPLELLKSYLQGRQQYVSIGKHRSGWCPITVGVPQGSNLGPLLFLLFINDIGKLQLNGKTRLFADDTSVSYRGGTCEELQRQMAADIVLLNDFFRTNVLSLNLAKTKYMIIHSSRRRVPDHPQLIVNGQTVEEVSSYPFLGLVLDSTMSWTAHIRALKSKLSSLCGIFWRISSFIPYPQMKMLYFALVHSRIQYLVANWGAACKTDLHDLQVLQNRCLKIISRKPLLFPTTQLYSDCTDSILPVKALYELQTMMLHRKISTDAKQHHNFALRRRESSRASRQLGDFILPRPYTEFGRKKFSYLGGKLYNALTTDCKKTTTIAAFKRLLTINMKQRIHLFV
>Crack-8_HMa_gag#LINE/L2 1-711 Fragment [Hydra magnipapillata]
IEAILKKQERNFANIINANLKITNQRLDKVEKMSNDNVNIIKAISKDVEELKTSLNYHEELVEKKIKTAVITVEKNKNYNETKNNKSEFTYVKKKLREMEDRSRRNNLRVDGIKEEDNETWCDSEAKVHKLFDEQLGLKSIKIERAHRTGLRNNKKPRTIVLKLLDFKDKIAILTKSSTLKGKNIYINEDFCAETNLIRKDLKEKMKVERQSGKFAYISYDKLIVRDWNQKKSNLCS
>Crack-8_HMa_pol#LINE/L2 882-3977  [Hydra magnipapillata]
MVSNMTENENYFENSSFNVFRLNNLNTLDEHDPDKIIFDDYSLMNTEAQYLFPDEIKQYLSDIEPFENLSLLHLNIRSAKANFENFKIFLEESNFIFNIICLSETWLTDDAYSESCRFDLLEYDAIHLQRKSKKRGGGVVIYVKNSLRFKMRNDMCISECNGEFVSIEIVNDKTKNILVTCCYKPPNASTENFSNHLQNIIQKVSLEKKKLFVLGDFNINALNYDNDIESQNFYNDLFRYGVIPLINRPTRITRNSATLIDNILTNFLFENSLKKGIVKAPISDHMPIFISANTSNKQKQKQNKVTFTKRLLSLNNQLAFQNELGNIDWSPLESFNDANSMFNSFHHNFLNLYEKHFPEKEVTIKIKNLNSPWFSKGLKKASKRKHRLYDKYLKNKCIKTKAEYKNYRTLFEKIKRTAKSNYYKKQLEKCQLNSRKTWQVLNEIIGKPKINKSFFPKILHIKNKTIANENNIANEFNNFFVNIGPKLAAKIPNVNKSFKEYLHYNKNQFKNENLTFKEYETAFKSLKRNKSSGIDGINSNIVIDCYNELKVPLFKICKRSLNEGIFPDILKSAKVKPIYKSGDKTDIGNYRPISILSIFSKIFERIMFNRLYAFFKDNDLFYSKQFGFQKSTSTEHAILHLINEIKNSFANGEFTLGVFIDLSKAFDTVDHKIMIKKLKMYGIRGVSCRWIADYLSKRTQSIYYGNKKLTNSSLISCGVPQGSILGPLLFLIYVNDLWRASNISTIMFADDSNFFISGKDIPQLFVQMNNELDKISLWFNANKLSINSNKTKFSLFHPLKKKKIPISFPKLVIENTEVSRERVTKFLGVLIDENITWNKHIAYIGSKISKSIGVLYQSRDLLNKHHLKQIYFSFIQSYLNYANIAWCSTSKSKLETLYRKQKHALRIMNFKNKNEHAKPLFEIMNIFTLYEINVYKILCLMYKSKFQQCPSIFNDLYEIKPNIKYTLRTTGLIEPLCKTKQEQFKITYRAPHIWNKILAKYSNLPGVNNINCFQKLIKKNISKYTNLINDFF
>Crack-9_BF_pol#LINE/L2 1-3165  [Branchiostoma floridae]
MASCLYANLAVLAAIFLQFTNPVTELKCISSSQPNPCEVFCSRFNFTAISQADHVLSLLYPTGHITRIARSKKDIHVKTSVNLAHLCIHTLLLLSGDVACNPGPNQSEDNVVANVDWQPLFERIKSKNGIKMVHLNTRSFLPKLDEIRMAMTDNPIDILTLNETWLDSSIDDNELYIPNYTLYRKDRNRHGGGVACYVTDELQHKLIPELTELDIESVWVEVKHTVGKPIVIGSAYRPPNATTQFFETLETAMTTATAISDEVFLLGDLNCDVLTKGACKKIDKICSTFQAKQLIDEPTRVTETSSTCIDIIITTSPEKVTESGVCSTGLSDHCFTYAVRKAKRPPGNPRTATVRSYRRFDESAFQEDLRNAPWSKVDNCSNVDDALSCFQTMLTNVCDDHAPWVSIRIRGHEPPWITQEYLAMAHERDFYFDKAKKTKLTSMWETAKKLRNKCNNMARYLKKQYYCNEIETKGKDSKSLWATLKTLLPSQAKQPVNVPKQQQKSIANKFNTYFTSIGSKLAAAFTGAYRAVLGPAQFSFKFTNISTEFTYKQLMSIPLGKSTGLDGVSSRLIRHAAPIIAGPLTHIYNLSLTTGEVPKDWKRAKVTPLFKDGDKTSCSNYRPISVLPTFMKIFEKAIHTQVYTYCKDHKILNSFQSGFRPAHSTTTTLVHVTDSIIENMEKGLVTGAIFLDLKKAFDTVCHKILLLKLRMYGVQDKELTWFCSYLTSRYQTTVVNGVQSDFLEVTVGVPQGSVLGPLLFILYINDLPDYISHGQVVLYADDTALFYASKTVRDVNTCLNADLRNIETWLHTNKLTLNVTKCKAMLFGTARRLQSSTEQLSTTLSGTSLEVVTSFKYLGVWLDPCLTWEVHIDKLCNAVSSRLGVLRRLIPCLPQRTLVMLFNAMVLPKMDYCDVIWGNCGKCLSDRLQKLQNRAARLILGLKYTHHVGVDELSALGWKTLTSRRNLHLLQSMYKAVNNELPDYINSFQRTSDSHSYPTRHSQNLCLKLPLVRLECGKRKFSYRGITAWNSLPPSVKTCTSKSTFRTNCRAWLA
>Crack-9_CQ_pol#LINE/L2 1-2333 Fragment, via tfasty with Crack-7_BF_pol, 1 frameshift. [Culex quinquefasciatus]
HTTSILVVINELDQILSSTTSSQECILLGDMNIPVNLPAVPSVRDYTHLLASYSLAVTNDRVTRPACNNVLDHVVCSGELAVNDNQRDHLHLSDHNLIVSFFKSSTPYLKQTHQKQIVDHNKLNEMFIQSMAGLPRSLPAEEKLIHIIDRYNSLRQQCTKTVTIKAKVKGHCPWMTFNIWKLIQIKESILKRRRRNPDDQHLADLLAHVSRKLQNEKSASKRNYYGNLLANGDQKTAWRVINDALGKQASRTHPNELCVNGRSTKDLNEICQLFNDFFCDVGPNLAATINSDRNINKFGTITPLRWNIYLRPTTAAETTILINELNSKKASGPDNIPVTFVKTHFNIFSLLLADVFNEMLETGNFPQCLKIAKVIPVYKSGDTKDPSNYRPISCLSVLDKIIEKLLVTRIMDYANHLKIIYEHQYGFQKAKSTLHATCDLVEDIYDSLDRREIDGAVFIDLKKAFDTIDHQLLLEKLSSYGFRGVARSLIQSYLSDRLQFVAIGESRSSPGLVTTGVPQGSNLGPILFLLFINDLAKLGLRGKVRLFADDTSLFYKGKDCTTIQQHIREDLEKLCSFFQTNLLSLNLAKTKYMLIHSPRRPLPARQPILINNHTIEEVSNYPFLGLTLDNTMSWDAHIDQLKRKLSSIGGVLRKVSSFLPPSALKALYFSLVHSRLIYLITIWGHANCHRLRELQVTQNRCLKTVLRKPHLFPTRQLYEDPDNSFLPVRALHELQMVTHIWKNPSLGQGRMHVNRASRQEGHFYLPRPRSEFGRKKIK
>Crack-10_BF_pol#LINE/L2 360-3764  [Branchiostoma floridae]
MNINLRLYRARIGLFGPIPQLCLYKDNNVRWRFYQVLLITICLILTSNQNGILTAANQENELKTNQLMHHWQNASQQVTSLYHKNLLTEQCNDQVNLICLAFDIHPNPGPISSTCGTCSKRVTNKQRAICCDTCDTWFHASCVNLSTEDYDYLSNSSDQWDCFGCTMPSASRSFFEDCTNLSEQYQANDSILSDNLDYQTVFDQLKSKKGLKVAHLNIRSLLPKLDELRAGMIHNPIDVLALTETWLDASIDDNELYISNYTLYRKDRDRHGGGVACYVNDRLQHNLISELTDFNIENVWVEIKYSIGKPIVIGTVYRPPSTTTQFFDTLEPAMTAATALSDEIFVLGDLNCDTLSKSSSKKIDNLCNLFQASQLIDKPTRITENSSTCIDVIITTSPENVTDYGVCSTGLSDHSFIYVTRKVRQPRGTPRTATVRSYRNFDESSFQEELFNAPWSKVEEHADVNGALDCFHSILHNICDKHAPWVTVRIRGHEPPWMTQEYLSMARDRDYYFHRAKKTKQPGTWETAKRLRNKCNNMAQCLKKTYYRSEIESKQNDSKGLWSTLKTLLPGQTKHADKVPKQSENNIANEFNSYFTSIGAKLAAAFSSVYMATIGPPKSMFSFADIPTEFTHQQLLNIPLGKSTGVDGVSSRLIRHAAPAIAAPLTYIYNLSLSTGTVPTGWKKAKVTPLYKDGDKTDCSNYRPISVIPSFMKILEKAIHTQVYNFLTEHKILNPSQSGFRPKHSTTTTLINVTDTILDNMDKGLLTGAVFLDLKKAFDTVSHEILLDKLRINGIQDNALLWFESYLSNRCQVTVVDGTISDCLGIAEGVPQGSVLGPLLFILYINDMPNYISHGQIVLYADDTALFYASKSVADINRALNADLCNIEKWLDANRLTLNVRKCKSMLFGTIRRLRLETEELNLTLSGTYLEVVACFKYLGVWFDSCLTWSIHINKLCSTVSSRLGVLRRLVPILPPKTLSMLFNCMILPKIEYCDIVWGNCGKSLSDNLQKLQNRAARLVLGLSHRSHVDNDHLSALGWNSLASRRKMHLLQTVFKSIHRQLPEYLQIFNRTSHTYATRLNSNLSLQLPKVRLESGRRKFEYRGAFSWNELPPTVKVASSALSFKKLLRNGNHC
>Crack-10_CQ_pol#LINE/L2 2-1153 Fragment [Culex quinquefasciatus]
LDNRDDVLGLFLDLSKAFDTVDRKILIDKLRYAGVRGIALDLFTSYLSNRAQFVCIDGIHSLLTLVNVGVPQGSVLGPLFFIIYLNDFSLLPLKGDLRLFADDSSLFYNNKSTNMNDLNLRDDLTIVIEYFRLNKLTLNINKTNIINIKNSSRSIPNSLSLTTSKFPDLEVVSDTKYLGIILDNRLNWSAHINALILKLHKITGIIFKIKHKLPQKVLFLIYHSLFHSILSYVTAVWGNACGLLINKLQVAQNRILKIILNLPIRSHTVDLYVKNNILPVRGIYVFQVCCFIYLCLNNKTHSNTKFVRSNHQYGTRYHDLLNRPNVTTVPGERSINFNGAQLYNYFNNRFGKSSSLNIFKNQLKQCLSRPDIIEKLLKSVNIFA
>Crack-11_BF_pol#LINE/L2 498-3899  [Branchiostoma floridae]
MNMAGCLLVQFVAFTAIILQLSNPVISLKRVSTQADSITTFNQVSCFKSHHTAVTPEEYVLSLLYPTANTGSRKNVCHVETRVNVVHLCLHTLLLLSGDVASNPGPKDPCGVCTKSVRNNQKGICCDLCDKWFHIKCTDLDHKTYCNLANSHEYWYCNQCLLPCFSDSFFNSPCNSTMGSSEEENVDLEDCPSIIPLKGLSIVHLNICSLYSKLDQLSVFMTSNHIDVLTISETHLDGSIIDNELHIAGYHLYRLDRNRKGGGVAIYVLDSYTHSERKDLQQPGLEALFCQIDLPCTKPIIVGSVYRPPSAPVEFYSLLKNSLETWTLSSPNSELYLLGDFNVDLGQHKNPGARNISSLSNEYQLKQLIKEPTRVHQHSASIIDHIYCSDLHLVTTSGVLQCTLSDHYAVYCVRKATRQRANTKYVTSRKFTKFNEQSYMDDLSKVDWNAILHIDKVEEAWTLFKSVLTTVSDIHAPYITKRTKDNQPKWLTSDIRKLMLTRDDLKAKARKSGATADWEAYRAKRNVVNKMVQRAKAKYCQEKLEENVSDSKKLWGTIGEILPNKKSIVSKTLTFAGEHLTGLTDIVKGFNKFFGMAGRKLAECFGSHNPTPLCPAQYKNLDCTFTFTPLTDQAVHTQLKNLPIRKAAGLDNIHPRLLKAAAPIVAQPLTHILNLSLSTGIIPSEWKLARVTPIHKGGDQSDPNNFRPISVLPIVMKIFEKEVHKQLLAYLHSHDILCTNQSGFRPSHSTTTTLLDVTDYILHNINSGKLVGTVFIDLKKAFDTVDHSLLLTKLNWIGLRSTELDWFTNYLADRQQRVSLNGCTSDSIPITIGVPQGSILGPLLFNLFINDLPKAITRSKVTLYADDTAIFFSSNDPRCIESTLNMELKQITSWFKSNRLTLNIKKTKWMLMGSTRKTNSTPDLEIKINGDTLERVSSYKYLGVILDSSLSFTDHLDEVCSKMSQRLGLLRRLRPYLCTGVANLLYKTLALPLLEYCNVVWDNCSAANKQRLQILQNRGARIILRREPRSNVGELHQALGWSLLQERRNRQICIMVYKCLHGLAPNYLLNTFRFNNQIHSHNTRQAQLLHKPNYTSRAGQRTFAYRAAEIYNTLKPETKQATTLKAFKQSLIS
>Crack-12_BF_pol#LINE/L2 1-2235  [Branchiostoma floridae]
QILILACAQAGREACGTRWCEYRSYKQYTQQSFIDGLKSVHWDTVLDCTDVTDAWDAFKDIFLNVADKFAPLCKRRVRDNNTVAPWMTDRVKNMMGRRDAARRKAIKTKEGKDWEVYRVIRNQTTSAVRKAKKIHFAEAVTEAKGDQSLMLKIINAFTGKSKGKCQVQNLARPDGTNISDPSEMSQEFNSYFATCATSLADSMPTSQKDPLRHIPEPSTEFSFESVDESTVLSELLRLKAKKATGLDNIPSKLLKDSAPVIVRPLTHIFNLSLATGEVPSDWKTAKITPIYKSGNRTNVANYRPVSVLSVTSKVLEKLVGNQVSRYMAQNNLLTVYQSGFRRNHSTASAVLKIVEDIRSANNSRQVTVALFLDLRKAFDTVNHAILLSKLKKLGFDRDATKWFTSYLSGRSQCTSLQSQCSEMAAVTCGVPQGSVLGPLLFCLYVNDMPQVLEKCKIHLYADDTAIYYSAGTMKECEEAVSQDMKRVSDWLIDNRLSLHHDKTKSMLFGVPQKLRHVGTTVQITDGVNIYEQVNTFKYLGITLDPSLQWSAHITNITKKIFSGLSAMRRAKPYVTKEILHTMCQTLLLSHLDYCGAAWLPSLVQGKKTQMLQLDRLLFRAARMITGYTLRDHVPVGKLLAEAGLVSVRNRAEKISLATVFNAVRGKAPLYISDMFRWKSPPTIRARTRTAVKMFADWDPHQLNCPVASLKCYEGSLKSFGPQLWNKLSLKHRKTLGLVKFIKEL
>Crack-13_BF_pol#LINE/L2 2-2143  [Branchiostoma floridae]
MILNEASLYIANLPWDLVELFEDVDDALDVSMLLFNTVADFHAPVRRFTVRANSAPWLDAELREAMAMRDEAKTAADLYGLPSDREIYKKLRNYVVKLNRKKKEHYFKSKMSENSNDPKYVWKLTNSLLGRSKCQYPTCVEVNGQNIVKPRQIANYFNDYFMTKTETHRKNLESQNAPVTVPIDQQIMSDKSCCFQFHPVSDDEILRLLLDIPMSSTCGIDQLENKLVRLSAVYIASPVRHICNQSLMSSCFPSQWKRAKVCPLRKNTRKPLTGNNSRPISLLPTLSKVLEKVVHNQIWQYAALNDIVTPFQHAYRPNHSTTTALLRMTDDWLSAMDKGEMVGVVYIDFSAAFDLVDHELLLAKLQSYGFSSGPLAWMRSYLHARTQVVYINGHFSEPSVLECGVPQGSCLGPLIFTLFTNDLPLSVSNSTTEMYADDTSMYKAAKSIAEIAAVLQPDLNKIVEWVKNNKLVMNVLKTKCMLFGSPRKLALLPSTSLNLVIGTRSIEQVKETVLLGLHMDQSLTWDLHINHVVAKQSRNIALVRRHAWAMSYEVCKVVLCALVLSVAQYCLPVLANMSESNARKLQVVQNRACRLVLKCPLETHVKQMHSDLGWPMVRERFAISTLTMFFRILVSKEPHNIYSSIVPVHSTHTYSTRLSNSFSFKLPKPKTNSKKRTFLYRAISLWNDLPPYIKSLPNISRFKKAMYQVFSSQ
>Crack-14_BF_pol#LINE/L2 1-2313  [Branchiostoma floridae]
TATCIDLAFTNCKERCTTTKSTPLGFTDHNIIYLTRKTKVPKTQPHVVYKRTYSKFNPDDFQQDMSMVPWHIVYDESDVNEALHLFTTLFCNVADQHAPAKRRTVRSNPAGWVDDELREVMRLRDDAKKEALASGLVSDICIYKKLRNAAVKLNRKKKAAYFKSKIAESRNDPKEMWRTLNGMMGRGHRRSACTVERDGEILTKAGDVADYFNSFFTQKVNSLRAGLDSQTNGDLLQLIRDKVMVGKDCSFDFQLTHWEQIHKHLLSLSDGKATGLDNVDNKLLRLAADQIARPLCYIINLSLITSEYPTAWKRAKVVPLPKSATTRLSGPNSRPISLLPAFSKVMEKVVSSQISDYFKVNDLMSPHQHAYRKHHSTCTALLQLVDDWYRKIDQGNIVGVIFLDFSAAFDLVDHSFLLQKLACYGFSDTAVHWMDSYLAGREQCVHFNGTNSPFREVNCGVPQGSCLGPLLFTIFTNDLPFAVRETIPEMYADDTSAYTCSPSVETVTVNLQEDLNNICNWVRLNRLFLNANKTMCMLLGSRPKMSKKPKLTLFADGCPIQQVTTMKLLGSTLDECLTWDLHVEETIKKMARSLGAIRRSVAYLDQSLVKMLTETLTLQHLDYCAAVWASTTQKNITALQVMQNKAGRLTLGTNRTPIKHMHNVLSWLTVSERLYVSSMCTLHKVLLAREPSLLYSRLHLVSGQHSYHTRHAARQNLRTEKPKTNSLKKSFTYRAASDWNKLSHELQTANTSRIFRRQLVKHMRDLAKDT
>Crack-15_BF_pol#LINE/L2 1-2976  [Branchiostoma floridae]
MARMCGFLVVRASCLLHSVLVCDHCVTVFVVILLLLCGDIHNNPGPARLNLPQKGLHIGHLNICSWSSKTCDLRELLDDNGFHVFGLSETHLDPSISDQELGADGWTVLRKDRNRHGGGVAFLVRDGLPWKHRTDLEKNNTEMLWIEVRLPQTRPILLSCIYRPPRTGMQYLNDILESVDRATDTNSEVFVMGDINIDWSNQLCPMREHLADVATSCNLSQVVKVPTRISVNKNNRRTATCIDLVFTNCKDRCTPARSVPVGFSDHNIVYISRKTKVPRAQARVVHKRSFRRFCPEDFLNDIELAPWHLVQDEQDVDEALHLFTVMFNEIADQHAPMKKQQQKSNPVAWLDEELRELMRLRDEARRESVISGLQSDIQVYKKLRNAVVKLNRKKKATYYKEKLEENKNEPKAMWKTLNGILGKGSKRATGVVEQGGTYLTKPKDIAEHFNAFFLHKVNTLRQGMEKQPDNTVLHLIEENIMAGKDCNFEFRQVNREEVYQLLLALPEGKAAGLDNMDNKLLRIAAEHVSTPLCYIINLSFVTSVYPSEWKKAKVVPIPKSTTEPFCGANSRPISLLPTTSKIMERIVCKQVSDYFSKNSLMSENQHAYRKNHSTCTALLHMVDDWYHSIDQGKLVGAIFLDFSAAFDLVDHNCLLSKLACYGFDESTTKWMASYLTGREQCVHINGTNSSFKELPCGVPQGSCLGPLLFTIYTNDLPLAITQATADMYADDTSAYICAPSIETISHNLQTEVNNICSWVRVNRLFLNTSKTKCIVLGSKPKMSAKPKLTLTANGKVIEQVSEVKLLGSTVDECLTWNTHTKLTSKKMARSLGMIKRCAYLMDQTLLKIVIECLVLSHIDYCSPVWSCTTKTNINLLQRMQNKATRLFQSKPQWKPVHTRLLINTMTTFKRITLTNEPICISRQLRSVNNLHSYRTRFAAKQSFLLEKPRTNALMKCFMYRAVRVWNNLPIVMQSTQSLRVFKDGLHKYFHQ
>Crack-16_BF_pol#LINE/L2 1-2928  [Branchiostoma floridae]
DIQTNPGPDLHLPSKGLHVGHVNINSLRNKVQELSQLLDVNKLHILAISETHLDSSVLDGALNVGEYSVLRKDRNNRGCGVAMYIHNNIPHKRRSDLETSDTEIIWAEVHLPYVKPILVGCLYRPPSAKLEYLHKIVQILDGVTEADREVLLLGDFNINWLSKYCPLKERLETELSTLNLKQMVKEVTRISRTINCPVSSSCIDLIFSNRPDKFLSTKSTPLGCTDHNLVHTTRKTKLPKGQSTILLKRTFKRFDQEQFLQDIADTTWDTVYENDNVEGALDNFMTLFTTVADKHAPVCKRTVRASSAQWVDEDLRVLMDERDRAKAEANATGTLSDFNRYKRLRNDVVRENRKKKKTFFKDQIETHSKDRNTKQLWTVINGMMGKTSGKSPSFIESKGQIITKPRDIAEHFNDYFIDKVNGLTLDKDINKQEAVAPIENIMSSKNCSFTFQAATVNQVKNILKSLPPGKATGHDHIDNTLLKLSAEYIAGPVCYIINSSLRQGVFPAQWKKAKVIPLIKNRSAPLNGPNSRPISLLPVISKVMEKVCQKQIQSYLISNDIISQKQHAYKQHHSTASALVQMTDHWLGEIDKGNLVGAVLLDFSAAFDTVNHEILLAKLKSYGFADSAVEWMESYLTNRSQAVYINGAFSTYKETKSGVPQGSCLGPLLFCLYTNDLATITKKAELVMYADDTTPFASAPSARAVESILQSDLTRIWEWIQINKLILNVGKTKSILLGSHHKLKHNPTLDLTVGGKKIMQVSQAELLGYTVDQHLSWNLHANKITRKMTGVTATIRKYKDYFPEDTLKTVIQSLVLTHLDYCSGILSSTAQTQLDRLQIIQNRAARLAANTSHTTSSEVIHDRLCWPSVKERMFTTTICAFHKIVTTKEPKCMYDNLRNINTAHHHNTRLSLRGGYVQPKPRTNSLTRTFQYRCIKTYNTLPTSITTKNQEVFKTKLREWVKAQKDKNQPLTSWW
>Crack-17_BF_pol#LINE/L2 287-3310  [Branchiostoma floridae]
MDTHEYFTLANSDQYWYCNPCMLPCFSDSFFDSSSNDNSTSSSVSDIVNDEEILESTDKIPPSKGLTIVHLNICSLYSKLDQLYVFMSSNNVDVMTVSETHLDSTILDSELHIEGYHLYRNDRNRHGGGVAIYVSEAYSHTEVPELKQPGLEAVFCTVNIPYTKPITIASIYRPPSSPVEFFSLLRDALEKWSLTKSDSELFLLGDFNVDINSNSSPGAKSLKYLSREFQLQQVINTPTRVNQHSSSLIDHVYCSDIHRVNDYGVVNCTLSDHYAVYCIRKGKRPNSAPKYVTSRKFTKFQEEDFLTDLKALDWSPVYQATCVEEAWSIFKSFFITISDIHAPYISKRSKAMQPPWLSADIKKMMFERDKMKARARKTGDSTDWEGYRATRNKVNRLVKQAKANYCQHKLENCSSEPNRIWTAVKEILPRKSSVITKTLNWAGQHLCDPLSIANCFNNFFVTVGRKLAERFTQQTLTLQCPTVYRQISSTFQFKQVNDDSVYNKLSTLSNNKATGLDHIHSRLLKAAAPCICKPVTHIFNMSLSSGHIPKEWKRARVTPIHKGGDQDDPNNYRPISVLPVIMKAFEKEVHGQFLEYLHQHQILATQQSGFRPGHSTATTLIDATDYMLHNISSGKLVGAVFLDLKKAFDTVDQNVLLQKLSWVGVHGVEHHWFTDYLAGREQTVSLNGCESDFLPVTLGVPQGSILGPLLFILYINDLPSSVSTVCKVCLYADDTAIFCSSKDARVIENTLNSELANLATWLHSNRLTLNVAKTKWILFGSSGKLRAVPPLRLQIDQETVEQVYQFKYLGVLLDCNISWNEHIDMVCSKVSQRIGLLRRLRSCLTVNIASMLYRCMILPLLEYCDIVWENCNITKQRQLQVLQNRAARVILQMKRRSSVQDLHSRLNWKYLTQRRKEHMCVMVFKCINGLVPTYLDTTFVHNHLLHSHNTRQASLLHKPNYTNTAGHRTFAYRGATYYNTLSADIRHAPTLRQFKAALRHTPPHMDL
>Crack-18_BF_pol#LINE/L2 1-2541  [Branchiostoma floridae]
MMLDRATCEQQETYVLGDFNIDWIQNSHASKRLKEMTESYSMQQLVGVPTRAVNRGQTVTTSCIDLVFTNQPDKCDNLRLQTIGFSDHDAVIFTRKSKIHIKGPRTVHKRSYKLFKEEDFLSDIREAPWHLVYNFDDVNEATDMFTDILQGICDNHAPIRKFTVRSNAAPWLTPDIQEVMKLRDEAKRGAKATGLESDWAVFRKLRNRVVSLCRKAKTRFYRETFESCSGNARQTWNTINSLLGRKHTVSPTSIVADGKLLTKPMDIADHFAGYYEDKVANLRSCMDRTDAHGSPENSQSSNSHVLSGQPDNLNVLPGLLSDNSHVLPGLSSDNSHALPGLSTSDSSHVLPSQSSFTFDPVTDKDVHKILLQLQDCKAPGQDGIDNKLLRISSDTIAGPMAYIINLSFTTRTFPTRWKHAKIIPIPKDNRQSLSGPNSRPVSLLPACGKICERIAAEQIASYLLRSNCQSEAQHAYRKLHSTETALLKMTDDWLDNMDNGLMTAVVLLDYSAAFDLVDHALLLKKLTTYGFTEDALSWTESYLTNRKWQVYTNGAYSKQRTLHCGVPQGSCLGPQLYNIYVNDMPEVVQNGLLDQYADDSTIHTRGHTLDDIRTETKIDLERVATWSDENMLKLNNGKTKVMLVGTAQKTRKAPPLELELRGQRLEQCPTVKLLGLHLDQNLTWDSHVTQIVKKCNRSLAQVGRVKDLLPRQQRIAVVNALIIPHIDYCCSVWGNTTQNNIRRLQVVQNRAARLALGCDRYTHVDSMLKTLGWLTVRDRIQQKSLATFERIMLTKQPKALHDKITFQSQIHNYRTRSMNTIRLPKPKSNSQKRRFLYRMSQLWNSN
>Crack-19_BF_pol#LINE/L2 3-1976  [Branchiostoma floridae]
TDRVKNLMGQRDAARRKAIKTKDTKDWELYRSLRNQTTSMIKKAKKTHFESAITDAAEDSSLMWKIINTFTGKTKGKCQVRKIRRSDESCISEPSEMAEEFNNYFSSCAADLARDIPVSEEDPLRHVPEATSTFRLRPVEETEVLNELLRLKPKKATGVDKIPSRLLKDSAPIIVKPLAHIFNLSITSGEVPDDWKLAKLSPIYKSGNKDSVSNYRPVSVLNVASKVMEKMVHNQVSHFVNSTGQLTAHQSGFRKHHSTGTAVQKVVEDIQSAQNNKKVTVALFLDLRKAFDTVNHQILLGKLQKMGFDNGAINWFRSYLTDRFQHVDIQNQQSTQKRVTCGVPQGSVLGPLLFSLYVNDLPQVVRKCKIHMYADDTVLYCSASLSKECEETVSEDMKLVANWFIVNRLSLHPDKTKAMLFGSPQKLRHAGNTVTVTDGFNSFEQVKVYTYLGVTMDSSLNWSAHTERMVKKLLAGLSALSRAKPYVTKEILLVMCRTLLYTHLDYCDTAWLLSLFHCNKVRSQQLTKLLNRAARIITGRSLKDRVPTETLLTEAGMVPLVERVKLNTLVTVHKAVRHKAPAYMTQMFKWLSPPVLRVRTRTATKQLYNFDPHMLDTPKAHVETFKGSLQYLGPVLWNSLAADQRKHTSTSAFKNGL
>Crack-20_BF_pol#LINE/L2 2-2479  [Branchiostoma floridae]
EKENADIAIMGDFNSDLLNSTHSMSSVEFLMGLYQLEPVIRQPTRITETSESCIDNIFVSNPDKYKSSASVAWGPSDHNLIMTCAKAGRVAGAARRCEYRSYKQYNQQPFIDSLKSARWDTVLDCFDVTEAWNAFKDIFLTVADEHAPLRNKTVRENNHTAPWLTDRVKNIMGRRDAARRKAIKTRDVKDWEIYRSLRNQATSVIRKEKKSHFAQAVTEAKGNQSLMWKIINNFTGKSKPNSVVSHLERADNTTTSSPCEIAQDFNEYFTSCATRLVDGMPASQEDPLRNMPEPTKTFSFESVDEVTVLNELQRLKTKKATGMDKIPSRLLKDSAPVIVKPLTHIFNLSLSTGEVPTEWKEAQISPIHKSGTRANVANYRPVSVLSVTSKVMEKLVSYQVSRFLDRNDLLTEHQSGFRKHHSTATAVQKIVEDVKSAFNSSKVTVALFLDLRKAFDTVNHNILLGKLKKLGFDSDATKWFTSYLSDRFQCTQIQGQHSTKALVTCGVPQGSVLGPLLFCIYVNDLPNVIEKSSIHLYADDTILYYSASSVKECEETISSDMXRVAXWLKENKLLLHPDKTKSMLFGLPQKLRHTGRSVNITDGVNVYEQVQSFTYLGVTLDPSLLWTSHAGKVMKKILGGLGAMWRAKGFVSTEILQTMCQTLLLSHLDYCATAWLPSLIQCNKGQTAKLDRLLNRAARLITGYRLQDHVPVHTLLTAAGLESVRKRLETVSLTTVFKSVRGRAPSYMSTLFRWMSPPTLRVNTRAASTRLRDYDPHLLQLPHVRVTSFRGSLQYYGVQLWNKLSHETRSMMKFRTFRRQLHLMA
>Crack-21_BF_pol#LINE/L2 1-2328  [Branchiostoma floridae]
YDLTNLITEPTRVTERSSSLIDVILTSNSSKYSSSGVYKGGLSDHHLVYTHRGLKQPKPAPKWISARIFKRFREEDFIADLERVPWSTITVFDSVQDMWSXWKSLFETVCNKHAPIKKFKVKGTERPPWLSDDIREIMSLRDQARCTAERTGNEKDWETYRHLRNHTKRLVASRKRSHYTEEINKGSTNDMWKSLKSLLGKSKSGSILSMKDDTGETSSSPDIAHKLNNYFGTVAEKLADSIKKTMPSFSPLVYVRRCLARFSFKSITADFVKQELKLLSSNKATGLDHLNNRLLKAAAEVIAQPLTTILNESLKKHEFPEDWKRARVTPIHKAGDRSLPNNYRPVSILPAVSKILERAVHIQLYEYCTENNILSEVQSGFRPKHSTQSATHLLVEKWFTAMNSGNLTGAVFIDLSKAFDTLDHSILLQKLFKYGIQGGALDWFASYLSGRQHCTSVNGVLSSFHTVKYGVPQGSILGPLLFIIYVNDMPNCIQNCEISMYADDTVIHFSSKDSGTIENALQTDLERLSQWFAVNYLSINEGKCKCMLIGTDKKLKTCTNPRLAVNGQFINLCYMYKYLGIFIDNQLNWKRHVKDVLSKLRRALSIMKHVSPFVSTSALRTLYNTIFLPYITYGSTVWDTAPEQDLQKLQRMQNRAGKLLLRAHYRTPSAEVLTRLGWKNIKSIHRQQKALLTYKALNNLLPVYMRNLFTYCRERSTRSTRQSESNLLYLPMVHREAFRRCITYSGTVLWNSLRENVRQAPSLSSFKNLTRLEIM
>Crack-22_BF_pol#LINE/L2 3-2369  [Branchiostoma floridae]
TSEHREIHVMGDFNVDWIKTSDVSKKLHGMTQSYGVQQLVDKPTRTVNRGLSVVASCIDLLFTNQPDKCSKITIRTVGFSDHDAVMFTRKAKIPTTGPRTVHKRTYKNFTEDAFLYEMKEAPWHLVYNFDDVDQATEMFADILQDTCDRHAPIRKFTVRSNAAPWLTPDIKELMQMRNEAKRDAKATGLASDWAVYRKLRNRVVSVCRRAKVQFYRDTFEECSGNPKKTWNTINSLLGRKHTVSPACVQEGGKLLSKPRDIAEHFAKFYDTKVANLRSGMSNTAGDETYANLGQEAFVLKSVTVRDVHKILSRLPDGKTPGCDGIDNKLLRISSDIIAEPLTYIINLSFATGTFPAKWKHAKVIPLLKDSSKPLSGQNSRPVSLLPTCGKVCEIVASEQIVSYFSRSGHQSEAQHAYRKLHSTETVLLKMTDEWLDSMDKGLMTSVVLLDYSAAFDLVDHVHLQKKLEMYGFSEEALSWIMSYLSNRKWQVYANGAYSQSRVLQCGVPQGSCLGPQLYSIYVNDMSSTVENGELDQYADDSTVHAAGRTVQDIRTKTLVDLECVAKWSDHNMLKLNNGKTKTMLVGTSKKTRVAPPLQLELRGQSLQQVPTVKLLGVHVDQNLTFDNHVDHVVKNCNRSMAQVNRVRKLLPRRLRIKLIQALVLTHLDYCSSVWASTSKKNINRLQVVQNRAARIALGCHRYTSRDALLQTLGWLSVKDRIQQKSVVTFRKIMQNKQPVSLYKQVKMQSHGYQTRSSKSQTIRLPKPRTNAQKKRFLYRMSSTWNGLQ
>Crack-23_BF_pol#LINE/L2 2-2371  [Branchiostoma floridae]
VLLGDLNCDMFVSSSSKKVDNLCKTFQAEQLVHEPTRVTATSSTCIDVIISTCPEKISECGVRATGLSDHCFTYAVRKAKQPKGTPRMANVRSYRNFNELSFQEELSSASWAEVKNCSDVNDALSCFLSILSAICDKHAPWVTIRVRGHAPPWVTQEYLAMTRDRDFYFHRAKKTKLPFIWDTAKKLRNKCNNMAQYLKKQYYSNEIKAKSNDSKGLWSTLKTLPGKTRHPVNIPNKTEKDTANDFNMYFTSIGSKLAAAFTSVYNVTVGPPKSVFQFNEISTDFTHRQLLNIPLGKSTGLDGVSSRLIRHAAPVIAGPLTHIYNLSLSTGVVPSDWKMAKVTPLHKDGDKNNCNNYRPISVIPSFMKIFEKAIHAQVYSYLKEHNLLNECQSGFRPKHSTSTTLLHVTDNILNNMDKGLVTGAVFLDLRKAFDTVCHEILLQKLRFSGIQGMALTWFHSYLSNRTQTTVINGVNSNLLELSVGVPQGSVLGPLLFILYINDLPEQISHGHIVLYADDTALFFAAKSVSDVNRALNADLQNISEWLETNRLTLNISKCKAMLFGSSKRLHLGNEQLTTYLSGTHIEVVPCFKYLGVWFDSCLTWQFHIEKLTNAVSARIGVLRRLVPVLPQDTLAMLFNCLILPKVDYCDVVWGNCGKGLSDKLQKLQNRAVRIILGLSYRSHVNNEHLSALGWKDLASRRKLHLLQTVYKSIYNLLPVYLNIFSRTSESHSYSTRHSLNQSLRIPKVKLESGKRTFAYRGAESWNALPLTVKTAPSTQTFKTLCKNVV
>Crack-24_BF_pol#LINE/L2 2-1600  [Branchiostoma floridae]
IPNTVSQFSPLQFVNKAVSTFAFTPITDSFVVNQLSTLKVGKATGIDSFDNKLLKLGAHILGPPLTKLFNNSLMTGHFPKSWKQSKIVPIHKKGDKTNPGNYRPVSLLSGVSKILERAVHNQLYQYLTQNRLLTQYQSGFRKKHSCETALHSVIEEWVSSIDKRELTGVVFCDLSRAFDTLDHNIMVRKLQQYGADDMACKWFQSYLTGRIQHTCINSVLSSAINVTCGVPQGSILGPLLFIIYVNDLPNCMQLCKIALYADDTIIYFAARNVQAIEQAIQSDSARLSQWFAANKLSLNPTKCKTMLVGSSRANDINTELDITLAGTTLDQVDKFKYLGVIIDNMLKWHDHCDHLNKKLAQIIGIMKYLKHYLDREALLTIYKALFLPHIQYCSTVWDQGGKGSLDKLQKLQTRAGRVIMGYDRHTSTSNVLRSLGWVQIVDVHKRSKATLVFKALNGMTPPHLTALFSQLSEIHTHNTRLRSQGGLLLPKAKSEYRKKAFSYSGAVLWNSLSSQLRSARTLSQFKRLYDQD
>Crack-25_BF_pol#LINE/L2 3-2153  [Branchiostoma floridae]
KTQAMVVFKRTYRDFCPEDFLKDAEMVPWHLVLEESNVNDALHLFTVMFNDIADQHAPMRKRAVKSNPVAWLDDELRELMCLRDEAKRESVASGLQSDFEVYKKLRNTVVNLNRKKKAAFHKTKLEESKGDPKAMWKTLNGILGKGSKRSTGVVEQDGIYLVKAKDIAEHFNNYFLNKVNILRQDMHQQSNDALLHLIEENIMADKDCSFAFQQVRREEVYKLLIDLPEGTAAGLDNMDNKLLRLAAELVSTPLCYIINLSFATSVFPREWKKAKVVPIPKSATAPFCGANSRPISLLPATSKIMERIVSIQVSDYFQQNSLMSNHQHAYRKNHSTCTALLHMVDDWHHSIDQGSLVGAIFLDFSAAFDLVDHSRLLQKLGCYGFSESTTTWMASYLTGRQQCVHINGTNSSFLELPCGVPQGSCLGPLIFTIYTNDLPLAVSQATADMYADDTSAYTCDPAIETISSNLQTEVNNICNWVRTNQLFLNASKTKCIVLGSKPKMSKRPKLALTVDGKSIEQVTEVKLLGTTIDECLTWNSQTKSTSKKMARSLGMVKRCAKFMDQKLLNIVIECLVLSHIDYCSPVWSCTTKRNLNLLQRVQNKANRLLQIRPKWKSVNTRLLLNTMTTFRRIVLTNEPVCLSSKLSFVKKQHNYSTRFASGRTFKLDKPRTNSLKRTFRYRATSMWNRLPIALQSALSSRSFKTGLCDLVSCLEK
>Crack-27_BF_pol#LINE/L2 2-2740  [Branchiostoma floridae]
NSVVEVSGYNLYRRDRDRRGGGAGVYVKRTIPSQRRSDLEHTDLEVCCVEIKPEKARKTLLACIYRPPISGRKWKDAADSFVHDLSTTAENENADVMIMGDFNVDLMKSTTESSSLEFLMGLYQLVPLIRQPTRITEHSATCIDNIFVSNPDRHKQSQSVTWGASDHHLILTCAKAGVETGGARTCEYRNYKRYCQQAFIDSLKTVRWETVLDCVNASDAWNAFKDIFLHVAEVHAPIKEKQVKEKGWSAPWLTDSVKNLMGQRDAARRKAIKTGEATDWECYRSLRNQTTSAVRMAKKSHFASAISEAEGNHSLMWKIINTFTGKTKSKCQVQKVQRPDDSCTSEPTEMAEEFNKYFSSCASNLASDIPVSSDDPVRHVPESTSTFCLQPVEETTVLNELLKLKTKKATGLDKIPSKLLKDSAPVIVKPLTHIFNLSMSTGQVPNDWKLARVSPIYKAGNRDNVSNYRPVSVLNVSSKVMERIVHNQVAHFMDRNGLLTAHQSGFRKHHSTGTAVQKVVEDIKSAFNAHEVTVALFLDLRKAFDTVNHEILLRKLQKMGFDIGTVNWFRSYLTDRLQCVDVQNKQSTLTQVTCGVPQGSVLGPLLFCLYVNDLPQVVEKCNIHMYADDTILYYSASLLSECEEAVSADMERAANWFKENRLSLHPDKTKSMVFGLSQKLRHTGKTVSVTDGVNTFEQVNTFTYLGVTMDSTLQWSDHIEKTTKKLLSGLGALCRAKPFVTKEILQVMCRTLLYSHVDYCSTAWMPSLLNSNKSKMMQLSRLLNRAARIITGSRRKDCIPTETLLAEAGMESLSERAKGNILVNVYKAVHNKAPSYLQNMFKWMSPPVLHRRTRYATKQLSEWDPHMLNVPKAHVQSFRGCLQFQGPTLWNELSAVQRQQTTQATFKNGLMQ
>Crack-28_BF_pol#LINE/L2 14-3127  [Branchiostoma floridae]
MWEKATSNVHLQSGTWITQNAYSVKINPGLSGVRLIGRSTTCTERTERTLNLLVCATLLLAGDVSPNPGPDTGGLPVWRKGIVYAFYNVVSLPRHLDEIQQLLLRNTRIHVLGLNETRLSDSIPDSSVDINGYTLYRTDRDRQGGGVGVYVKQTIASQRRCELEQEDLEVCCVEIKPEKARKTLLTCVYRPPTSGPDWRNSAESLVHKLNQTAEKENADVAIMGDFNSDLLTSTQAMSSVEFLMGLYQLVPVIREPTRITEKTESCIDNIFVSNPDRYKSSASVAWGPSDHNLILTCAKAGSEAGAAHRCEYRSYKLYTQQSFIDSLKSVRWDTVFDCTDVSEAWNAFKDIFLNVADEHAPLRTKTARENNRPAPWMTDTVKNMMGRRDAARRKAIRTKDVQDWDTYRSLRNQTTSIIRKEKKSHFATAVSEAKGDQSLMWKIINSFTGKSKSTKRVQKLLRADNTSMSDPGEMAQEFNDYFTSCASRLTDGMPDSEEDPLRHIPDSTTKFSFDCVEETEVLNELQKLKTKKATGLDKIPAKLLKDSAPVVAKPLAHIFNLSLASGEVPSDWKEAQITPVHKSGSCADVGNYRPVSVLSVTSKVMEKLVCNQVTRYLTRCKLLTTHQSGFRRHHSTATAVQKVVEDITSGYNCSKVTVALFLDLRKAFDSVNHEIMLSKLKKFGFDSDAMKWFTSYLSERLQCTCLQGQYSSKTRVSCGVPQGSVLGPLLFCLYVNDLPNVIQKCSIHMYADDTVLYYSAVSVKVCEETVSMDMKRVVKWLSENRLLLHPDKTKSMLFGLPQKLKHAGTTVNITDGVNVYEQVDSFTYLGITLDPALRWAAHVQKITKKLLSGLGAMGRARAFVTNEVLKTMYQTLLLAHLEYCATAWLPSLAQGNKTLMLQLDRLVNRAARLITGHKLRDHVTVDNLRAEAGIDSVRKRTEITTLVTVFKTIRGKAPAYLASLFKWEAPPTMSVRPTRSEVKRLRDYDPHLLWCPPARVIAFRNSLQSYGPFLWNSLPLKQRQLLSLRTFKKFIEN
>Crack-29_BF_pol#LINE/L2 2-1972 Fragment Crack-26_BF_pol is 92% identical and even shorter. [Branchiostoma floridae]
TPAPWLTNDLRDLIALRDSMYKKAKRSGSPTDMTDYKAMKNRVNYLCRQAKRDHAAQSVIQGSEGGQAGVWKAIRTLLPNKTHNTVTYLEHEGLSISDSKGMAETFNDFFHKVIQDLCDVLSRTVSPFSPTQFLNETNSSFSFTPITVEAVTEHLTKLNVKKATGLDSIDNRLLKTGAQVLAPSLTNLLNKSLTSGEFPEKWKTAKVMPIHKKGDRTMLSNYRPVSILSSISKILERVVHNQLYGYLNQNRLLSQCQSGFRKLHSCETALHSVTEDWIDSIDKKQQTGVIFCDLSRAFDTLNHDILLDKLKAYGVDEMACSWFKSYLTGRLQRTCVNSILSNTSCVTCGVPQGSILGPLLFIVYINDLPNCVQSCRVAMYADDTIVYFSHRSIQTIQETLQNDCTRLMHWFVANKLSLNPLKCKSMLVGSHKSKATDQQLQLILDDTELEQVGTFKYLGVVIDKALLWNDHFLHVNKKLSQIIGIMKCLRPYLNRQALLTIYTSLFLPHIQYCSTVWDQGGKGAIDKLQKLQYRAGRVILGCDHYTSRETVLNLLGWTPVAQHHRRAKAVFMFKALNGMFPPHISHLFTTSADTHSHHTRHSTQGGLQLPRTRLQYKKKSLSFSGAALWNSLPAHLRTASSISTFKTIYTTEYHMI
>Crack-30_BF_pol#LINE/L2 1-1740  [Branchiostoma floridae]
RLTGSQKSSEIPSLVNSDGKVESSPSAIARELNSFFGHAAGKLAAMIQRCTSLFHPLQFLQHSKVMFSFQPISESFVLNELLTMKVNKASGLDGLNCRLLRAAAPVIAPSLTSIMNLSLLTSEFPTDWKKARIVPIFKAGDRTEAGNYRPVSILPAVSKILERAVHIQVYQFLTENNLLSDRQSGFRRKHSTETALHLVTEEWYKAIDNGNITGAIFIDLSKAFDTIDHSILMQKLSAYGIIGQSAKWFQSYLSGRSHCTSVNGHTSDFCTVNYGVPQGSILGPLLYLIYVNDMPNCVCKCHIALYADDTILYVSHPDLASVQLALQSDLDRLSNWFVANSLSINANKCKAMLIGTNKRLLNTHKLSVHINNDMLNVVPAYKYLGVTVDKELKWDMHVETVLSKLKRALNMMRQVRPLVTKAALLTMYETIFLPHITYCSSVWDGASTVQIQRLQRMQNRVGKLILGVQSRTPTTVVHHLLGWKDIQSIHKMHKLLVVYKSLNNMLPAHMGELFMTCRENAARATRQSSTLKLIAPRVSRECVRRSLAVAGPAVWNVIPEDVRNSPSLRAFRHGLISNC
>Crack-31_BF_pol#LINE/L2 3-2342  [Branchiostoma floridae]
KSSCKKIDTICNTFQAKQLIDEPTRVTENSSTCIDLIIATAPEKVIECGVESTGLSDHSFTYAVRKAKQPRGTPRTARVRSYRQFNEAAFQEELYGAPWAEVEKCSNVNDALCCFHTILTNICDKYAPWITVRIRGHEPPWMTQEYLALARDRDFHFSKAKKTKLPHVWETAKRLRNKCNNMAQYLKKQYYHNEIKAKGKDSKSLWTTLKTILPGQTRHTTTENVSKQNEENTANRFNAYFTSIGAKLAAAFTSVYTPIFGPPRFSFKFTNISTEFTYKQLIGLPLGKSTGLDGVSSRLIRHAAPAIAGPLTYIYNLSLSTGEVPREWKRAKVTPLFKGGDKDDCCDYRPISVLPSFMKTFEKAVHAQIYTFLNGHNILNKFQSGFRPAHSTTTTLIHVTDTILDNMEKGLFTGAVFLDLKKAFDTVCHTILLDKLRMSGFQDTELAWFRSYLDDRKQTTVVNGVASDFMGISVGVPQGSVLGPLLFILYINDMPDILQHGKVCLYADDTALFYAANSISDLNEALNEDLRNIDVWLHSNKLTLNVKKCKAMLFGTRNKLRLGTDKLTVTLSGTCLEVVSSFKYLGVWFDSCLTWQDHIDKLCKGVSARLGVLRRLKPVLPKRTLEMLFNCMVLPKLDYCDVVWGNCGKCLSDKLQKLHNRAARIVLGLSYVSHIGSDELSSLHWKTLETRRNEHLLHTVYKSVNHLLPDYLNVFHMVSETHSYPTRHSLSQSVQLPQIHLECGRRKFSYRGVCQWNHLPMTLKTAPNIATFKHMMKLG
>Crack-32_BF_pol#LINE/L2 1-2349  [Branchiostoma floridae]
EELKFLCDAYDLSNVITEPTRVTEGSSTLIDVILTSNPSKHSNSGVYKGSLSDHHLIFTYRGLKNPRPPPKYISTRIFKGFDEGKFREDLATIPWDTLNILDSVQSMWATWKSLFETVCNKHAPLKKFRVRGEDCPPWLTQDIREIMALRDKARHTAESTQSQTDWETYKQLRNHTKRLIISSKRTYLTDEINNGNTNGMWKSLKSLLGKTKSSNISCLNDANGDMCSSPLEIAQELNKYFGTVAEKLARGINTGMSLLSPLQFVHRCLARFTFSQVTTESVQRELLALKTDKAVGLDNLNNRLLKAGAEIIAPSLTNLFNESLRRSEFPDDWKKARLTPIHKAGDRAAPNNYRPVSILPAVSKILERTVHTQLYKYLTDNSILTEAQSGFRPGHSTQSAAHLLTEKWLDAMNDGQLTGAVFIDLSKAFDTLDHNILLQKLFCYGIQGGALDWFTSYLSSRQHCTAVDGSTSDFHRMQYGVPQGSILGPLLFLIYVNDMPNCAQFCNISMYADDTVIYYCSKDVSSIQENLQNDLNTLSQWFMANSLSVNSGKCKFMLIGTDKRLNSCKSPNLSINGAAVTECKMYKYLGVLIDRNLNWKCQVNAILCKLRRSLSILKHVRTFVSTPTLLTLYNSICLPHIMYACTVWDSAPERELEKLQRMQNRAGKLILRAPYLTPSAEVHSRLGWKDVKSLHKHHKALLVYKALNNKLPPYIRRMFTFCRDRSVRTTRRSASDLLVVPKPVREVYRRSLAYSGSLLWNSLVPEARAATSISSFKRXVTR
>Daphne-1_BM_gag#LINE/L2 654-1871 [Bombyx mori]
MTYVLSTMEDNSNVTIRDRRRFMMTGSLSMESTDSLEDAPSSINARSMIDLSTHTMTSHQEVITSLQLSIENLKKQLQTTRSENTVLKQKLDEQIHINKQLNKQINGTTVSSPKKKNNNNKTEIRAMKPNIEARKLDLDLEFQTPKSSPLVPKDTKVNLSLSQCDDELLESSHIDRNKPTLKPSGSRRLLIFGTQQCVGLAAKLLKTRLYTNYEKYRITAVTKPFASSEEVFKCCENLNLNKDDKLVIGVGENDTNPFKLLIELSATLKRLYEVTVIVLRINYNKSLNVSMLNNNVKLVCNNFPNCYFIDYFGSSYNKNKYIICQKINYIIDSIDYDTKYLSLKNNKNSTLHTIEIKNDTLGNLTKNNSRYTQRTILDYFKKINIQTPNCTSIQALPTNNNLFFRK
>Daphne-1_BM_pol#LINE/L2 1864-4764 [Bombyx mori]
FVNNKERNIDCKLTLLHQNIAGILGKIDLLKITLDELYSQNTDIDILCFSETFLKVGEESKLVLRGYNIANFYSRSKQRRGGVAILCKDYISSKPILWLRDLALEFSFECCGIEIPEYKCIIICIYRTPNSRVQIFLDKIEIVLSTIRNKTNKKIIVCGDFNINLLKSSNILNEYKRITQNHRFNIHIKEPTRQNACLDKIISNVSEAEGKIHSLGLSDHETGQTVCIPVKYVKKPQKIYYIRKRDFDEYNINKFIEYVASLSWTEECEMTDLNAAFNSFHDHIVLLYNLCFPFRKIKIDNNKSQKTLWITTGIKKSCVSKRKLRYSYIKNKTTSSKIKYKKYNKILKSCIITAQKIRNEHHINKSSNICRTSWNIIKQNDNKINSNNKSNIKQILHNGRVITDTTEIASIFNNYYIEITNDENKNYNNIQAINTQNTNISSSSIFLMPATCEEIYKTIHSLNNTNSTGYDELPTFILKQCAIAITPILCHIINLSLTEGTFPDKLKISIVKPIYKKGHKECINNYRPITLIPILAKIFEKIMHSRLTTFLNKSEVIKSEQHGFQKGKSTTLAAFKLISKITENVDRKIPTVGVFFDMTKAFDFVDHNILLRKCNNYGIRGIAEKWLSSYLSNRQQYVEIRDIDNNNEEVAFKSSLAYNKVGVPQGSILGPLLFIIYINDLPEHIHYPCSLFADDIAVVITKDATLDLNDEINATVSKVIDWMNKNNLKANLDKTRYIQFYNRHKFINNLNITYNNNTLNECNSITFLGLNVDNQCSWNLHIDITCSKINRFSYALWRLTKICNLKTALQAYHGYVASNIRYCIPLWGNSSHINRVFIAQKQCVRAMCNIHPLTSCKPFFQKHNILTVPSIYIQECCLFVKKHPQLYKSCGEYCQFNTRYPTKLMLPSINTRYYHTNCYPMTIRIFNKIPNSIRDLPLTQFKRKLYLWLIDKAYYSVQEFLNDKCCT
>Daphne-1_TCa_gag#LINE/L2 7-958 1 frameshift. Resembles Proto element gags. [Tribolium castaneum]
MAGDATQQANVLCKKCGSKVVNFVKCKLCQHQFHPSCAKILNATFHDNKSITCCEKHEIFEDAYDGKTSDDEINWENVSPQLFSYIIKEKDALIEELRXVKLHYCKFAFKKKNKSLSPKKHSPPMIAGQSPPAHTVVDNKSAGRNKNEIKNKDKLNKVVFEKDQLQAQSNTTATKIVENNKKSMPRHETPKNEDSVIEERKNDWKTITHKKLDRKQQRNAVIGTHACDKIKTAPKKAFLYVSRLYPETKSEDLVSLLQNTFPEVTCMKLDSKYPEYYSSYKVTINLNNLEHAMKSEIWPEGSYVTRYFHPRRSKTSSQ
>Daphne-1_TCa_pol#LINE/L2 958-3741 [Tribolium castaneum]
ITPDSLQQCKGSLKILHLNIQCLSNKLNEILLFLENHRDYDVLGFSEHWLSEYEIQSINLLNFKLATCFCRRILRHGGTVLFVRDGIKFKHLDLSCFSIECDAEFSGIYLNEVKTVVICLYRSGLGNVDIFLEQLGLLLDHIQNKTTDIVLMGDFNIDFKMHKSNNKLKELLTLIMSHGLKVTIDTMTRISSSSESCIDNILTNINDGLYESEVFNPCLSDHYAQHITLFNKNTLKPRSTTVTIRNKSNRNMRLFIEALETVNLNFQLKDVEESTNFIINTYSYLIEKFFPYKEIECKDSYVPLKWFSDELRNLRNNVSILKTVSLVSKDPIDIKAYKSLHSQYKKNIATTKKNAYNQFLKNSVNKSRDVWKLINFERNCNPHRINNEISSDEFNNFFCSIAEKIVNSIQPNSFPNTSQSFNRTINTQSFFLEPVSQKEVSNVINKLNNSKCCDIYDLDSSILKSSEFIVTPFLTELINKCFVSGVFPNKLKCSKIIPIFKKGNKMNVENYRPIAIIPILGKIIEILVKERLIRFFEKYNLLSNSQFGFRKGRCTITALRDMVEHVVECLDGGHAIGAVLCDLSRAFDCVSHSILLQKLEHYGIRGTPLKFFESYLQNRKQMVLSNNKYSNIGKIEHGVPQGSVLGPLLFIIYINDLSAHLSPIKNILYADDATLLFASKNRNEINLQFEDGLRKAEQWFNNNCLKLNKDKTQKIIFSFNNNHIRGVQVKLLGLIVDDGLKWNYHIDYLCRKISSQLFVLRQLKKVLNFNNLVTTYFSLIHSVLSYGILLWGNSCHSIRVFKLQKKAVRILAGITQRESCRPWFHKFQIMSLPSMFIYSTLIETHHSNNFQTHGELHGYNTRGAHLLVTTKHNHVTTDKNCLNLNIFNKLKRETKLLQHKQFKQTVKNYLKDNVFYSITEFLTSNITI
>Daphne_DS_pol#LINE/L2 1-2706  [Darwinula stevensoni]
PSFQYSLQGYSSEFFCRSSTRGGCVALYVRDDHPAIPLPELSQLSSENNIEITAVRILNPNWKHLPDLPLIALSVYRPPNGNFTVFFNTLELALSKLSPAHNSVIIMGDFNIDLLKNSKNSKRCLDLFTCFGLFPCFFLPTRVSRSTETLLDNMFTNISPCNLYTDVVPNDDSDHRQLCLRIPLEIKTQSYPPTNFRRLLIPSAVKKASNFLESINWTSLMSSKSVDDQLDTLMGKIHASQARSLPTKRITPRKPSKSWLTTGIRISSARKNALFLILYYGPSNLSLLKYYKRYRSILHRVIRKTKQMSVISEYEQCSRDKNPRGLWRLTNRILGRDATHTIVGLRENDLLLTNGEDIANRMRSHFSSLFSPHTPPISSVPVGSSPQFSFFLQPITELETLTIISHLSSTKATGPDNVSAKFIKKIAQSIALPLTLIFNNSLSTGVFPSALKQGKLIAIHKKGEKDIVSNYRPITILPVISKVFEQLVQQRLDSYLNCISFISQSQFGFRSNRSTQDALLHFLKEVQSILNRNQAAVGIFYDIAKAFDSISHKLLLQKLESLGVRGVANSWFQSYLSNRQAAVHHRDHTGRVHVSEPINITSGVPQGSVLGPLLFLIYINDLPTNAPKIHLTLFADDTTACLPVSRNSTPTSVSTSCDIAIDSWTTNNGLRLNASKTTRVLFSTLRRTDPPLTFATSTTFLGIRFDPYFRWDNQVDHVCRLLKYAAASIYRLSSILSQEDLKKMYYALAFPHLSYGLLAWGHCSERHVCRILSLQKRIVRTILHKSIRTTCRPLFPKLKFLTFPSLVLFHTSVYFHAIVSKNEAISNAGVHSYDTRSKNDYHRSIDSSALASRLIFSWGPHYFNSIPRSIRQLNHTAFRRQLKELFLSHPLYSFSEFFDITW
>Kiri-1_AAe_gag#LINE/L2 166-984 [Aedes aegypti]
MHQNKHITRSVSTSSVNDGNITKRPRDETXSPAGVEDENRDLXNKIQXMFETSNSKIEAKIDASISRLEQRISGVEKQFATFQSECTDNINKLATAVTEVRVGLKTTTQRIDMLEKSNDLLISGLPYVVNENLHQLFRNIAASLAYADSDLPLVDLKRLMRPPITAGSSPPIVCQFAFRNAREEFYKRYLKTRNMTLRTVGFDSDQRVYVNESLTLQARAIRTEAIKMKKNGILLKVFTRSGIVYVQRXEGSAAEPINDISHLRAGFSSNLSX
>Kiri-1_AAe_pol#LINE/L2 1528-4353 [Aedes aegypti]
MDEFPLNNASPNTIIPRIVLNAALQPEFLNICHMNVQSLTARNFSKFHELKLNFTDSKVDVICFTETWLNSTINNSMLSINGYKLIRNDRNRHGGGICIYLRNNLSYKVVSMSNNSADDFCGTEYLNIEVKVGEDKILLGVVYNPPNIDCTDTLYDVLENCTIKYKGSYIIGDFNTDLLKHFSRSRKFIEMLXTLSFACTNSEPTFYHRSGCSLLDLFITDAPDTVVKQDQLSMPGVSHHDLIFCSLRYSPNRQKDYVSYRDYANFDSVALFDGFHSINWNLFFNMDNPDELLEYLNYHLLKLHDQYIPLRRKKDNKTPWFNNDISHAIINRNLAYNKWKRTKEQIDRNSYKRLRNKANELIIQAKAKYDKQKLKVDLPSKQLWNNIKELGLSKDSRFLEQNDLTADEINNYFISNFTNDDSTPFRNLSTDGFKFLEFLEHDIINCIFSVKSNAVGLDNIPIRFIKILLPLALPIYKYLFDSIIKTSIFPRAWKNSKIIPIKKKGNCSAXSNLRPISILCALSKVFEKLIKCQINKFISDNDFLHPHQSGFRSNHNTNSALIKVHDDISHVIDKKGLAILLLIDFAKAFDRVSHSKLVKKLSTKFSFSQTAAELIQSYLSGRQQAVFHNGLLSTFSEIKSGVPQGSVLGPLLFSLFINDLPAVLEYCSIHMFADDVQIYICISGEVDMNEIARKINHDLVNISHWSRNNLLEINPSKTKAMLISKRKNPPNPPIISMDGQIIQFFDRLNNLGVIFTTNLSWAAFINGQCGKIYGTLKRLNMISRHLDTSMKIKLFKSLILPHFTYGEFVYSHASALSLNKLRVALNACIRYVFNLNRFSHVTHLRDVLLGCQFSQFYTLRTCVQIYKIIKTNSPRYLYSKLQFLRNTRTLSLVIPHHSSAYYGQSLFVRGIHNWNCLSPLLKSSSSILVFRKGLLSEIERMR
>Kiri-1_CQ_gag#LINE/L2 301-1125 [Culex quinquefasciatus]
MSTKRTPPINPATPSGSSNNSNQNKRYRSSSAGSVSPGASPGPLTLEAVMKEINMQFTKTFDRIDTISNKIDTVKAELNEQLSSVSRDFNSFKAECADKFKFTDDAMCELESRIDGISQEIGGIENRNELIVSGVPHIPGENVAAYFKDMWKQVGLPENPAPLVDVRRLKTGTQGDGLILLQFALRNNRDDFYSCYLRKRDLKLQHLGMNSTRRFYVNENLAVPARKIKKAALELKKSGKLSSVYSKKGIVHVKRTADQQPGTAVHSENQLQQYS
>Kiri-1_CQ_pol#LINE/L2 1299-4148 [Culex quinquefasciatus]
MPPLTNHTSANIPGVVMNCALHSGKLNICHGNTQSLCARKFAKLDEVKDLLHNSKVTVACFTESWLTGQISDRSIAIPGFAVCRNDRMYQRGGGIVIYYRSHLSCRKVFCTQLSAESGNKTESLVVELRFGGETVLLVAVYNPPGNNCSDFLEEKLVEYASTYNNVLLIGDFNTDMSKPSNLQSQFQSVLDTFALVSVGEEPTFFHNRGSSQLDLFITSCSDRVLRFNQVGCPALSQHDLIFASLDFDANPVPRVNTYRDYVNFDSTSLVDAVSSVPWHNFYEVNDPNELADFFNSRMKQIHDVCIPLRVIRCRNESNPWFSYEIRKSMLERDLAYSDWRRAPAESKLVARQRYNSLRNRTNTMIANAKVQYFNRFLDSRVPSNVLWKRLKSVGVGKEKSSSVCEFDPDEVNRAFLSSFIQNEQGSGLRSSAADSPYSLTFQPVEGWQIVNAVCDVKTNATGLDGLPIKFIKIVLPLVLQQITHLFNSIIATSIFPTCWKHAKIIPLRKKPHLSALTNLRPISILCALSKVFEKLLEQQMSSFITENNLLTEHQAGFRKGQSIQTATSRVFDDLARTTDRRGSAVLLLLDFSKAFDTIPHNKLCTKLETQFNFGPSAVNLIRSYLENRRQTVFCGDLQSVSSIVDSGVPQGSIVGPLLFCCHVNDLPPVLRYCSIQLYADDVQLYIGRLGPCSRELIRMVNEDLDRIAVWSQRNQLFVNQAKSKALFVQGRRRNKAQLDLLPRITMSGQAIEWVDSAKNLGFIFQADLQWDGLIQQQCGKIYGSLRTLRSCTSAAPVSTRLKLFKSLILPHFLFGELLHVNPSAGALDRLRVALNCCVRYVYGLTRYDHVSHLQRNLVGCPLDNLYAHRSCLFLRKLLTTRSPPELYQKLQQFRGRRLLNLIIPANRTLTYSSSLFVRGVVNWNMVPTELKHGVSQATFKRNCLEFWNRE
>Kiri-2_AAe_gag#LINE/L2 267-1061 [Aedes aegypti]
MPDNDHTSRLRSNSLVKSSAKSTDADMTVAELANLMQSQLATYQRTVKEDFKKLGDSLSSISTEMTKLREDIASDIEKLREENNKTFNSLSTTIDEAKRDTSLALDRSARMNDLLVSGVPFVVGEDLSNYFRTWCNSFGYAERDHPLVDIRRLSKGTPTAGTVYMILIQFAITVQRNEFYSRYLNSRSLSLSGIGFSVDKRIYINENLGPIVRNLRSKALQLKKAGKLRAVFTRSGVLFVRRIGEDKEIAVSTENDLCLLAKTLS
>Kiri-2_AAe_pol#LINE/L2 1311-4238 [Aedes aegypti]
MICMILFVSKNVIFNEVLFYHSPLLVKSFFYLMANNPNFYTSTNWCIPGTVIKSALIRNKLSVCCVNSQSICARKLCKIEELRAIVSVSKVDIVCVSETWLNENVNSSILSIDGYNIVRHDRVGRLGGGVLIYIKCDIPFNLVAKSDNQSGVAITEFLSIEVILQNEKLLLTAFYNPPEIDCTEPLEHLLALYGNTYSYVYLLGDFNTNLSVSSPKSNRMRSILSTYSIQCLGSEPTFFHKNGSSQLDLILTNDVSKVLRFSQIEAPVLSNHDLLFASLDFEREVHPIKVEYRDYNAIRIDSLVNAFYSADWRSFYRSNDSNQQLEFFNALLTDLHNLYVPIRTTNSNKKFSPWFNNEIGKAIVDRDLLYKKWKNTKNANDLQAFKRARNSVNSVIRLAKQNYFSSRLDPNLPAKELWKNVKMIGINPPSMQTTNSFTANEINHMFCQNFTDNFSLDQSNVTNYVDREPFYFDRIDETDVVYAMNSIKSNALGLDMLPMKFLKAICPILIKPITHLFNSIIITSAFPDAWKKSKIIPIKKKSNLNSMDNLRPISILCALSKVFEKIIKSNISCYISRFNLLSQFQSGYRSKHSTKTAMLKIIDDIGVVVDKGRPVVLILLDFSKAFDTVSHAILCRKLKTKFSFSDHAANLIESYLCSRSQAVFNNGVLSSFLPVTSGVPQGSILGPILFSLFINDLPCVVKNCQIHLFADDAQLYYKCFENTSTKISQDINDDLQRIDDWSRENKLTLNTRKTKALFISNCAFLNSLKPFLKLNNEVIEFVEHATSLGIRIESNLEWDSYILSQCGKIYACLRTLSKCASFLPSRTKLKLFKSLIFPHFLACDFLLDSVSLLTFNKLKVALNTCIRYIFSLNRYSSVSHLHHLLIGCRLENFSKLRCCLFLHKLCSTKQPDYLYSKLQLARSTRYKKYILPRYHTTKYGNSFFVRGVVHWNSLPINLSNDKSYLAFKRGCEEHFK
>Kiri-2_CQ_gag#LINE/L2 290-1114 [Culex quinquefasciatus]
MATNTTTVDDKNNNKQFLQSSYVQGCQSSIDGRIGENSMTLDIAVRMLMMQFTEMKLMLETFRNDFNRKIDTIKSELQGKVSVLQSDITTLKAEYEGKFVNQDAALGQINHRVNHLYLNIGALENQKELIISGVPFVSDEDPDALFAMICRQLECSEGEELLTSTRRVYVNGLKNGDVSPLLVEFALKTTRDRFYSTYLRRRDLKLRHLGMPSDRRVFINENLNAGAREVKKAALLLKKVGKLTSVFTKGGIVHVKRRVGDPPIAVQSVKDLDDV
>Kiri-2_CQ_pol#LINE/L2 1272-4118 [Culex quinquefasciatus]
MPVPHNHTNTNIPGAVLNAALLPGKLNICHGNAQSLCARKNSKLEEVRAALSSHKVDIACFTESWLTASRNNRSIGVQGYSVVRNDRVYKRGGGIAVYYRDTMSCTKIFNTELTPESADKTECLALEFRLNGFKVLLVVVYNPPDNNCAPFLEEKLTSLTLRYESVFLVGDFNTDLLQASNKRTQLLSAFESFSLVPYGCEPTYYHDTGCSQLDLLVTNDSDKILRFGQVDFPGLSQHDLIYVSLDFDATQPVTVNTYRDYVHFDADALKFATVSIPWRNFYAILDPNHSLEFFTERLKVVHDTCFPLRASSRRNAPNRWFTADVQRAILERDLAYKDWRTAASDVKDLKRRTYKTLRNRANSVIERAKKTFLGGYLDANIPSKLLWTRVKSLGVGKDKSSQPCDHDPDEVNRMFLSSFTPAETRNDQHARILPSQYNFSFRNVHYWEVVNAICEVKSNAVGMDGLPIRFLKIVLPLVIQQITHMFNLFINTSTFPNLWKHAKVLPLKKKSNSNDVTNLRPISILCSLSKAFEKLLDQQMANYIDNNHLLTEHQAGFRKGQSVKTAALRVHDDLASTIDKRGVGVLVLLDFSKAFDTIPHNKLLDKLETEFNFSSTALNLMNSYLRRRKQTVFCDNRRSDCAEPTSGVPQGSIIGPRLFCCHINDLPNVLKHCAIQLYADDVQLYIRGVGPCARDLIRMVNQDLQNVADWSNRNRLLVNPAKSKALFIQSANRRAALVPDLRIEMNGEQIQWTERASNLGFIFQSDLQWDGLVSQQCGKIYAGLRTLYSCTPTAPVATKLKLFKALVLPHFLFADVFFVRLSSSLFNRLRVALNCCVRYVYGLRRRDHVSHLQKNLVGCPMLNLFAYRSCLFLRNLLSSQTPPALYQKLILSRSQRLRNLVVPANRTAGYACTMFVRGVVHWNALPPAVKNSLSDATFKRGCKEHWNEV
>Kiri-3_AAe_gag#LINE/L2 279-1046 [Aedes aegypti]
MCTGMTSNTMDSIDGQLKPGSHLSTLDGLLKKVLHLCEIECSTIRSKFQDSVSDIRNQISIVQNEITSLQTVYLQNVKKLAASVSAIEKDLEKSRKERIDRSNDLIVSGIPYVPNENLNDMVQNIAQHLGYENNNLPIVYATRLPKRTRKYRETTPVLIQFVTNLSREQFFRRYLAKRDLSLQHVGFNSRQRVYINENLSTVDRQIWRYACKLRNDGKLVRVHLKNGIVLVKRSNDNHSTPIHSMKQLFVFMKFES
>Kiri-3_AAe_pol#LINE/L2 1195-4039 via tfasty with Kiri-9_CQ_pol, 1 frameshift. [Aedes aegypti]
MSDNMLNNVSSNEGIYHIPRAVMNAALRKDFLNICHMNVQSICSRQLSKFNEFTSCFHNGKVDLICLTETWLTNDISDDTIAVEGFKLIRNDRNYGRGGGVCLYFRSNLNCKKVSASDLFVGLGDACNTEFLFVEVSTGADKFLLGIFYNPPRVDCCELIFQQLSDHILKYKNIVLIGDFNMNVKKDSPIVNRFCSVFDHFGFTCVGNEPTHYYSGGSSQIDLMFTNDPEFILNFNQVSGPGFSAHDIIFSSLNVARSCFSSAVFFRDYKHINFESLNHTLTTIDWSALYSINDSNLALDYFNQVVLSLFDHFVPLRSSKLVRHNKWFNNDISRAMVERDLAYRVWKRTKGQQERDQYKRLRNRVTMLINQAKSVYISRSSELSRSNNDLWRRLKEINVKKSGAGMLFNNSCDEINNYFASNFTVDNYFPRLPPPNENGFRFVTTNEYEIDKMINSITSDAVGLDGVPLKFIKLILPFVITPITHVFNTIILTCNYPRAWKTAKILPIRKKSRGCDLKNLRPISILSALSKAFEKILKNQMLEFLNNFNLLTDVQSGFRAGHNTTSALLKVHDDVHRTIDRKGIAFLLLIDFSKAFDRVSHYQLLRKLSDQFNFSAPAVNLLQSYLTDRSQQVSIDANLSEIAHIVSGVPQGSVLGPLLFTLFINDLPSVLKYCSIHMFADDVQIYFHSCNLSSSEMAHLINEDLSNIYDWSCRNTLPINASKTKIMHISRARQSQSLPVISLGGETLSYVNHVSNLGVIFQHDLEWDSHINTQCGKIYGGLKHLKLTANMVSVEIKLRLFKSLILPHFLYGIELFNNASARALDRLRVALNCCVRWVYNLTRFSSVSRLQHNLLGCNFYDFFKLRSCITLFKIIKTTTPHYLFTKLQPFRSMRTCNFVLPQYATSHYGGTFFVRGVVFWNQLPLEIRSIDRLDRFRTECREFFNRRN
>Kiri-3_CQ_gag#LINE/L2 104-883 [Culex quinquefasciatus]
MSNRSTRSNSVPSLASLFELENGNQNKRSRKELNKDSVPTMSLEDLWTKIESKMDSFKQDFDKRIDGLETQLSQLKTECTARIDDLSEAVVEVRADLNLASNWIGRVEKYQDLIITGVPYSPTENLKTVFRDIAAKLAYDPLDVPMVDLKRLAKPPIAAGSAPPILCQFAIRNERNAFYSKYLSLRNLNLEHIGFNNKNRIFINENLTPQDREIRTAAIKLKKEGRIQQVFSRDGVVHVKSRGGPAEACYTVEHLRSCSK
>Kiri-3_CQ_pol#LINE/L2 2668-5496 [Culex quinquefasciatus]
MASSTTGNASANQYITRAVVNAIFDNTKLNICQINVQSLCARNLVKLEELRRVFKDSKADVVCFTETWLDTSITDSLIAIDGYNLIRNDRNRHGGGICVYYREGLQCRVVEKSKSVRDTSSTEFLLLEIECLNDKLLMGVYYNPPTVDCSEILSAQISKYSMKYKACFLIGDFNTDPNRSGAKSKRFNDVLSGLAFHFANREPTYFYQTGCSLLDLLLTDSPNQISKFNQVSMPGISHHDLILASLEFSFTIPENRSYYHDYNNINYAELNEAFSRINWANYLNCAEPDILLEFFNVNMLNLFTQFVPLKEFKVRKNPWFNAVIEKAMIDRDLSYRNWKRSKSIEDKNHFKILRNRVNSLIEKAKSDHSNRILNTNVPSKKLWSNIKNLGIASKTKSPVVCNSSVENINQYFSSNFSPSQGDFNSNLAAVDGFHFRAVEDYEIVNAISSITSNATGLDNIPIRFINLMLPLILPIVKHLFNTIITTCIFPRDWKKIKVIPIKKKSSSCDVTNLRPISLLSSLSKAFEKIIKYQLTEHVNRYDLLHPLQSGFRKGHSTETALIKVHNDVARCIDRRGVAVLLLIDFSKAFDRVSHTKLLNKLATSFGLSRPAVLLIESYLRDRSQSVFLNGFHSSFVDILSGVPQGSVLGPLLFSLFINDLPPVLKFCSVHLFADDVQIYLCSDANINIADMQRKINSDLLKVQSWSEKNLLAINPAKTKALLISRLKTPPNPPELFLKNELLEFVDHACNLGVIFRNNLDWDKQINSQIGKIYGSLKQLSLTTRFLNSHTKLKLFKSLLYPHFIFGDFIYPNATVESLNKLKVALNSCVRYVYNLSRYHRVSHLQKNLIGCSFSDFYKYRSCLTLFRVMHTGEPNYLSSNIIPLRSSRSKQFLIPQHYSTYYSQSLFVRGISTWNLLPLNIKTSMSIPYFKRKLLAELNNPNQ
>Kiri-4_AAe_gag#LINE/L2 361-1128 [Aedes aegypti]
MSQLWLRSRTAEMSKLDSKRKEIVHGSSPSNEISNNELARLITNQGKTMQDQVNKLGNDLRAEFSKGMDEIKADLVEVNSKLCCMRQDVFDNANAIARSNLSNDLIISGVPFTENEDLLHYFRCWCKTMGYADGNVPYVDIRRLSRTPLNAGNIYFILVQFAITNQRNDFFSCYLRNQSLNLNQIGFQTNKRVYVNENLTPTARKIKSKAIELRKAGKLAKVFSRAGEIFVRSKEIDQDVIIKSEEDLRRFEHLGG
>Kiri-4_AAe_pol#LINE/L2 1443-4274 [Aedes aegypti]
MANVRREYTSTDWSVQGIVMKSAFISNKLSICCMNAQSICARRMSKVVELRQIAKVSNVDVICITESWLNINVSSDVLDIEGYTIVRNDRVGRLGGGILVYLKKNINFKIIEASSNDIGTPETEFIFVEISIDHRKVLMGFFYNPPELDCSQVIHDKLTCLKYQYDHIYLMGDFNTNIINTLSEKVKRFCATLQCLSLSSLGRIPTHFHRTGASLIDMIITNDTGSVLRFNQIEVPFLSNHDLLFASLDFDLLPNNNTRTFRDYSRINSSKVIELYNRIEWNEFYSIDNPDYLVPFFNNHIENIFDSCVPLKTVHNHPRSNPWFNQDISKAMIDRDLAYRVWKVSKCDTDYSLYKSLRNKVTALINTAKKEYWNTKVSNASTSKELWKYFGQMNVNSKKTNGDTRFSPDEINVHFSNCYSTSNDVVANNPSLVDSFFSFSAIELNQIINATYEIKSNAVGLDGIPIKFVKSILPLLLKPMHHIFNSIIKLGVYPNAWKISKIVPINKKSNSNSLDNLRPISILSAISKIFEKLVKNQIVTYISNSNLLSSSQSGYRKGHSPKTAMIKVCDDMGFVLDSGGSVVLLLLDFSKAFDSICHETLCHKLESQFGFDFDAVSLVRSYLTNRSQTVFVNNQFSEYLPITSGVPQGSVLGPILFTLYINDLPIRLAGCNVHLFADDVQVYFNCSGLTTDAAAELINNNLQRILDWAVENHLILNARKTQACYISRFKRMVEKPEIVLNGNRILYSDVVTSLGIIVQQNFEWDSFILHQCGKVYAALRTLRSNAYFLSSATKLRLFKSLILPHFITCDFIMTQASRTTMDRLKVALNCCIRFVYNLNRYSHVTPLQNALIGCPFNKFPSVRSVLLLHNIIRTQSPSYLFSKLIPLRSVRGKKFVIKRVRTSHYASSLLVRGISLWNNLPSHIQNTNSSLGFKKTCLQFFNHE
>Kiri-4_CQ_gag#LINE/L2 299-1345 [Culex quinquefasciatus]
MAKNRSSDEICDVCNRGAPPGSKGKRKPKTITWIGCDACPRWFHPLCVRISDSQMEEIDDYQYFCESCAVRGCLIPKPQPVMTASGGVSELKKVIQELSAELTKLRAELDAARETNKKQLDRLRNVVNSNTRSEVTTTRLASDLSEKLEKIERGAQLANTCSQTINSCRLAINKIPFKVGENVRQLVADVLTLVGCSDEQASITDCFRVPAKPSKWSDRSLTPTIVAVFSSLEARQKVLRKYFERHKDAALRNLKHGPALDYRFTVNEVLSINTFRIRNHALRLKQRGAARSVFVRNDKVSVLLPGQVRYTPVNSVEHLQELVSSGSSSDSSSLFFDALSANVSASSRC
>Kiri-4_CQ_pol#LINE/L2 1382-4225 [Culex quinquefasciatus]
MTNIANLRIGHLNVRGLEHHIDGVKLLLDAQQYHFFGVTETKMRASAPVGPVRVPAYNLIRHSLPSGRGRGSKACGGVGLYVRQGLKATPVIKSTHDIAAPIATRVEYMVVQIRINELNVGVAVVYNPSCSNPSFAVLYERVLLEMLDLGFDRTFIMGDFNINVASVLPSLNLTSLRRIHSTFNLTVLPTGPTRITDTSSTTIDLLITDCPQSVRKAKAVSASAISDHEVIYMLADVQVRNQNRRTTRIRNFRNVDVLQLQAEYRTKDFQRFYESNDVEEKATLLTADLQELLDRHAPERMIYVRDERTPWITHQIKQTIELRDLALKLYKRNPNRRRGDQQWLEHSRLHDRANSLIHAAKKRYADQHFNHELPAKKLWSNLRREGIHNSAKADPPAEGVDADDLNRFFSDGHRELGTNRGSTRSRTPAHRTVVDHGENGFNFRQTNSEEVNRKIHDIQTNATGTDGIPISFVKMLCPLILPELCHLFNAIITARAFPSLWKTAIVTPIPKQPSPSLPKHFRPISVLPAMSKVLEKILLDQITDHLDNPNAPLLAKHQSGYRKGFGTTTALAKVTHDIYSNLDNNSCTVMVLVDFSLAFNCVDHHLLKDKLNREFRFSSASCELVASFLGQRKQSVRLGDAVSAVRDVTDGTPQGSCLSALLFSLFINSLPGVLRCEYQLYADDLQIYVSGPIEQIEDLIASINNDLAAITNWANQNRLHPNPKKTQAIVFTKAGSVRPHTDIVFSGEVVPLSDRVVNLGLLLDNNMTWKHQVNSVTQKVYNTLRTFRRFAAVLSQPTRRKLVQAVIMPMFTYCDVVYYHGLPAAHKEQLHRCFKSAVRFVYNLRRRETTAAVRSTILGHDLPINYQLRTSCFMKKGYDGNLPEYLQQHLVRGQLERTRSFIIPRHTTTSGRSVLVAGTTCWNNLPLELKTQPTLSAFKSAFKRSFDD
>Kiri-5_CQ_pol#LINE/L2 178-3017 via tfasty with L2_Ele3_pol, 1 frameshift. [Culex quinquefasciatus]
MTNTVNNVQELRFEPINATLKNNLSKENGFKVGHLNTCSIICHHDDVKNIFTRTGFDCIGFTETWLNSDIKDALIKFDNFEILRHDRNSTTRVRGGGVALFVRPEYKTKIIKTSPRDSIEYMFCELNSSQLQVVVGVIYKPPTLKDFSFFFEDLGNISSTYNNIILMGDFNINILVSNPMSNNFTRLINSFSLSIVNKSFPTHFHNTGSSLLDYFICSENLQSTLFSQVSVPAVSHHDLIYTVFNLPVPVASLKTISFRNFNRIDKEAVRNDFPNFNFDQLNGIVDCETLASNFNHKLIQLVNKHAPLKTKTILPTSCPWYSREAYNACVDRDLAYRFWKNNRTLENKLIYNRFRNRATNLIRIAKKQYSAKLFDPTLPSKTIWKNFKSLGFRDDPDNLDDKFKPEDVNNCFIQKIENYPTGNRQPTIIPDIVEEDQFKFRAVTEDEVHKAILRIKSDAIGYDEIPLKFVKLFLDLLVPYITLLYNKIISTNTFPTIYKLAIVKPIPKIKNPSNPNDLRPISILPSLSKGCEILLKDQIVQYVTFKKLITPFQSGFREHHSTSTIITKVCQDINASFDSNYVTVLILLDFTKAFDLIDHRIFIDKLKEQFQFSSDACDLMKSYLSDRSQLVQINGVRSQFRSTKRGVPQGSVFGPLAYTLSVNDLPSFITHCNKQSFADDTQIYLSCPVDQLPNKISLINSDLSAISRYCKDNGLVLNTSKTKAIIFSRQNTVLPHLPPIQIDNENVEIVDECLNLGIKMNKHLTWEDHVSLIKKKVYSTLRTLNCHRHTLSIDTKIKLVHTLLMPHFIYGNVIFSKMNVDTERHLQVCFNSCIRFIYNLRRFDHVSQFQRSIFDLSLSKFYQFQLLLFLFKLINFKEPQYLFESLVFSRSNRTNNIIIPVHHTNFMGNSFAVRGARLWNDLPHNLKSITLFSEFKRRCKEHLKNSI
>Kiri-6_CQ_pol#LINE/L2 2-2332 [Culex quinquefasciatus]
ALHRIHAAFNLTVLHTGPTRITDTSSTTIDLLITDGPQHIKKAKAASVSSVSDHEVVYLVADIRVPRTCQRTIRARNFRNIDQLQLQADFQAKDLRRLFESVDINEKATVLNLELNTLLEVHAPERTITIRDERTPWITQQIKAAVGLRNLALNLYARNPNRRRGDNQWLDYERKRDRASSLIFAAKKRYAELHFAHDLPAKKLWSNLKREGIHNTTKQSSSSADINADELNTFFSDGHRRLGNAATPSHRNAPAEPSHRTAVDHGANGFSFRHTSVEEICRKIFEIDTNATGTDGIPISFLKMLCPFILPVLCHLFDAIIETRTFPALWKTAIVTPIPKTSNPVLPKDYRPISVLPAVSKVLEKILLNQITEHLDNPNNPLLARNQSGYRKGYGTTTALAKVTHDIYGNLDAGRCTVMVLVDFSLAFNCVDHQLLAAKLNREFRFSRPACELVSSFLGERKQSVRHGNVVSAVREVTDGTPQGSCLSALLFSLYINSLPASLKCNYQLYADDLQIYVSGEIDEVDRLIGTINMDLEAITHWATENRLHPNPKKTQAIVFSRSGRVVPQSDIVFKGEVVPVAEKVTNLGLEMDSAMSWTHQVNSVVQKAYNTLRTFRRFSGVLTGATKRKLVQAVIVPIFTYGDIVYYSGLTAALKQQLHRCFKSAVRFVYNLRRRDSTAAVRHSILGHDLPDNYNLRTCCFIKRGYDGNLPEYLQEHLVHGQHQRTRSLIVPRHTASSGKSIMIAGVTLWNNLPIEAKMIPTLSSFKSALKRSFQN
>Kiri-7_CQ_pol#LINE/L2 1-1668 [Culex quinquefasciatus]
KNDPAGDVDADELNAFFSSGHRQLQAVDRSDNSSEPCHRTTADHGDNGFAFRHTDVNEISRKILEVQTNATGTDDIPISFVKLLCPFVLPMLAHLFNHIIDTSSFPAAWKKAIVTPIPKSSSPIQPKDFRPISVLPAVSKVLEKVLLGQISEHLNAAEPPLLAQNQSGYRKGYSTTTALTKVVHDVYSNLDENRCTVMVLVDFSLAFNCVNHQILRKKLNTEFKFTRSACDLITSFLSGRSQIVRFGNSMSAALDVPDGTPQGSCLSALLFSLYINSLPRNLKCEWQLYADDLQVYLSGPIAEVDRIVRDVNEDLAAIADWARVNQLFPNPKKTQAIVFNKTGTVTPQENIVFCDSIIPLSSQVINLGLHMDCNLTWKAQVNDVVRKVYHTLRTFRRFGSVLSLQTRRKLVQXVIVPFFTYCDTVYFPGLSAALREQLHRGFKSALRFVHNLRRRDTTVALRNSIMGHDLPDNYQLRVCCFMKKAFEGTLPDYIMQHLQRGRQERTAGFIIPRHTTSSGKSVLVHGASCWNSLPMAIKREARFNPFKRAVITHMQN
>Kiri-8_CQ_gag#LINE/L2 3-926 [Culex quinquefasciatus]
FLLPEAKYGDEVLQLDTXXSSNLRHIAGLLSFPQVTHWNHSXFDSDHEWNEENRRQKKSSVSSKDGTNFKRSRDDLDETDDRIQSFDELLTRMKQMFDDTNTRIDTCKSDLQAEFTTLREDVQSFKDRCSVEINNLSDALALTQNNVNLNHERHLKNXKSNDLLLSGVPYHQPEDLLGFVKSASAALGYGERELPLIYTKRLXRPPIAPGSTPPILLQFAFRAARDDFYFRYLSSHNLSLTHLGFNVNKRVYLNENLTDQARSIKGAALKLKKSGKLHSVYTKDGFIFVKPAEGGEAKLVNSLEQLAE
>Kiri-8_CQ_pol#LINE/L2 1552-4058 [Culex quinquefasciatus]
MLDNSSATPSQLNCFIPRVVMNCALDSSKLNICHLNAQSICARQLSKFNEFKICFSNSKVSIICVTESWLTDNIPDELISLEGYNLIRNDRKCARGGGILVYYKSNLTCKILTXSKNDTLNTTEXLLIEIHCNREKFLLGVFYNPPRVNCSEIVSSLFSEFSTSYENVVIVGDFNKSGTLSDNFLNAIDHLGICCVNSFPTHFHSGGCSLLDLFXTNNTNFVHNFNQVSAGGFSKHDMIFASLNLSSFEDEIYYFRDYNNVNLPALIEAVNSINWSQLFSMXDPDIALDXFNQHIRNLFNRFIHLRKYVPRKNSWFNNNIMKAMIERDLAYNIWKTDKNFTNYSQFKRLRNKVTHLINEAKSNYVTSRVDSSVSSKDLWNKLKQLNISNKSKPDVKFPNSNAEINNYFTSNFTQDLSHPPILPRNNEGFRFSEVNVNDIINAINSVKSNAVGMDDIPIRFIKLILPEIIHKITFIFNMIILSSKFPRAWKMTKVIPIRKKSRSLDLNNLRPISILSALSKVFEKVLKIQIQTYLDNFNILNSNQSGFRKNHNTTSATVKVLDDILSVIDKKGKAFSVFIDFAKAFDRVSHVKLIQKLSLQFGFSSGATELLQNYLCNRKQVVFANGLFSDSASIISGVPQGSILGPLLFSLFINDLCSVLNHCRIHMFADDVQIYIASNRLSIPQMAQLLNEDLANIYDWSCSNLLPINSSKTKVMLFSRNSSEHQQPLIMLGQNVLEYVLKYPSLGFILKNDLEWDGHVNAQCRKIYIGLRTLKLSASMLPVNVKLKLFKSLLLPHFMYGDVLLLNASSASLNRLRVALNACVRFVYNLNRYSRV
>Kiri-9_CQ_gag#LINE/L2 248-982 [Culex quinquefasciatus]
MSFKRSREDLTKSDSEDEPVQSLDQLFSRMKSMFEETNERIECCKTDLQSEFAVLRDDMQQFKAECTNNVNKLSAELSKTQDNVSLNYERILICGKLNDLLLSGVPYQSSENISNYVRSVSLALGYSDQDRPLIYTKRLARLPIADGAAPPLLLQFTFRAARDEFYRRYLSSRNLSLSHLGFTINKRIYLNENLTELARAIKGSALKLKKDGKLHSVFTKDGFVQVKTRAEDEARPVLSMEQLTN
>Kiri-9_CQ_pol#LINE/L2 1546-4377 [Culex quinquefasciatus]
MLANNGLAPNTNQSSSIPRIVMNCAMESDKLNICHLNVQSLCARGLSKLEEFKQCFTNSKANIICVTESWLTEKIEDELISLDGYKLVRHDRNMQTRGGGICVYFKTGINCKILSCSKNESNNITEFMLFEMEIAGEKVLLGVFYNPPRVDCATVLSQKLADHSLHYNKIIFIGDFNTDIRKSCTLTDNFLNVTDTYGLSCINTLPTHFHYGGSSMIDLLLTNDPDFVLKFNQVSASCFSRHDIIFSTLNLNTSNTSNFSLFRNYNKINFQALDHAVASINWNLLYSITDSEIALDFFNVNIKQLFENFVPLCKYIPRKNPWFNNDILKAMIERDLAYGLWKADRSTLRFDEFKRLRNRVTNLINIAKSKYVANRLNTAESSKVLWKKLKVINVKSKQPRVEQFLNSNNEINYHFSSNFTQDNTPPHTLLPNNNGFKFSTVDINDVILALSSMKSDAIGLDQIPLKFIKLILPLIVDKITYIFNLAISTSKFPRAWKSAKIIPVKKKPRSLALDNLRPISILPALSKAFEKILKAQIQTYLNNFDYLHRFQSGFRSKHSTTTALLKVHDDILKVIDRKGVALLLFIDFSKAFDRISHSKLINKLSLKYNFSIEAAKLIQSYLTGRSQSVLSGGTLSIPIDIISGVPQGSILGPILFSLFINDLPTVLKNCMIHIFADDVQLYLASNSXPVTEMARLLNDDLCEILRWSTRNLLPINPSKTKVMFISRNRGVSTLPEIIFEQNVIEYVTEASNLGIIMQNNLEWDCHINGQCRKIYNGLRHLRMTSSMLPIQTKLKLFKSLLLPHFMYGDVLFLNAAANSINKLRVALNACVRYVYNLSRYDRVSHLQHNLLGCSFNNFYELRSCLTLFKIINTSTPRYLVDKLLNSRSTRTRNYIIPQHRSSHYNESFFVRGVANWNQLPVSIKNIHSPIEFRKECINWFGMRN
>Kiri-10_CQ_gag#LINE/L2 58-840 [Culex quinquefasciatus]
MSNKTKTRSASAVDGDGQTLKRSREDLTVADYPDEVENITDLWRNMKKLLFNSNSRLEGKIDACKTSIDDLEEEFVALRKECGEQMEAVHHRVNSVEFGLQQTAEDVARLERASELIISGIPYQQTENLPQFFQNIATVLGYDQPPIVDLQRLAKLPIAAGSAPPILCQFALRNVRNDFYRRYMTNRDLTLRHIGFDADKRIFMNENLTKLAREIRSQALRMKKAGIFAQVFTRNGAVYVKRQGQPTSELVQCVQQLSLQK
>Kiri-10_CQ_pol#LINE/L2 1407-4241 [Culex quinquefasciatus]
MFDSSNDDASANYLIPRAVMNACLVNDKLNICHINVQSLCARRFSKFEELKLNFITSKVDIICLTETWLDDSITDATIEIQGYNLVRQNRNRHGGGVCVYFKQNISCKILKKSLGAISTNGRYETDFLLLEMQFNGNRFVLAVYYNPPQSDCSYLLRTHIEQFCLKYENSFFIGDFNTDIRKNTRKTNDFIDTIASMSFSCVNFEPTFFYNDGCSLLDLLLTNSPELVLKFNQVSMPGISAHDLVFATLDFEKRVDLDGYWYRDYNNFNNHAFENALSRLSINEFLSIDDSDILLNTLNNHMFILHEQAFPVKFKKSFYKSWFNPDIERAIINRDIAYNAYKRSKSPEHRTNYNRLRNVVNYLTKTAKRDHDRQRINLNVPVRQMWKNIKKLGVSKSKNNNIDSTHSAEEVNNYFASNYSERSSSSIHYSHSTDSFHFRQIHSYEIVDAVYSIKSNAAGLDNLPISFLKVVLPFLLPFFEHLFNTIVKTSNFPALWKRVKVIPIYKKSGSSEITNLRPISLLCTLSKVFEKVIKDQISHYITEMNFLHALQSGFRKNHSTETALMKVHDDIALSVDKKCVAVLLLIDFAKAFDRVSHVKLLNKLISLYNFSNAATKLLKSYLTERYQAVFLNGILSSFILCESGVPQGSILGPLLFSLFINDLPNVLKYCSVHLFADDVQIYFCSDQNFNIPDICSKINFDLNQIHTWSESNLLSINPAKTKALLITKLKTKPDFPNLIMNGAQICFVNEANNLGLIFRDNLEWDLQIKSQCRKIYISLKQLTLTTKHLDVNTKLKLFRSLIFPHFIYTDFIYSNANGMHIDRLRIALNACVRYVFNLNRMSRVSHLQKHLIGCSFSNFYKFRSCVVLHRIINTKKPTYLYEKLVPFRNTRTYSFLIPNHSSFYYSQSFFARGIVNWNSLPTTLKQNTSKYNFKQSLLANLNINH
>Kiri-11_CQ_gag#LINE/L2 346-1434 [Culex quinquefasciatus]
MEEIKCNQCNKVDPPGKRGRKSAKNKNVNKPKIDWIECDGCSAWYHSVCVRVNEALLGNMNEYYYFCEKCPLRGSLVSKPAHPAPASPAAPAGPSIQEIEQLKQTISDLAAQLVKIQAEVDSVRTTSKKQHDRLQSKLNSADQRDGQCAAQSALINNIEQKLEIIEAGARLASTCSQSVNSCRLAINKIPAREGENLRGIVESVINFLGVPQEMSHITSCFRLEVKPSKWSDRSLTPTIVAVFDNRESRERVLRRYFEKHKDAKLCHLKHAPDLEYRFTINEMLSVHAFRIRNLALRYKQRKAIRSVFVRNDSISVLLPGKQRYTPVNSPEHLLELLGHDHQADESSVFFDARSLDVSSSSRC
>Kiri-11_CQ_pol#LINE/L2 1470-4310 [Culex quinquefasciatus]
MSRTNLPNLRIGHLNVRGLEHSIDGVKLLLDKTQYHFVGVTESKLKQSSPAGPIRVPAYNFIKHSLPTGRGRGARTCGGVGLYVQKGIKATPILRSLHDPTIPISQRFEFLAVQAKINDLNICVVVLYNPVCTNPHFAQAYEKLLIDLLDFGFDRLFLVGDFNINVAAPQQSVNLVALSRINAAFNLTVLPTGPTRITETTSTTIDLLITDSPGSVIKSKTCTGNAISDHEVVYLLSNVRMPRSAPQTVRTRNLRAIDPMRLQMDFQARNLQPILEAEDTSAKAVLLNGVLTDLLQQHAPERTIVVRDKRTPWISETIKQAVALRDLAFALYSRNPNRVRGDNQWQDYIQKRDRANSLIFAAKKRYADQHFDANLPAKTLWCNLRREGIHNNAKKNQATEGTDADELNKFFSDGHRQLLGARQENPAEPAHRTEIDHGADEFTFRATSGEEICRKIYEIQTNATGPDDIPISFIKLLCPFVLPILTHLFNEIIMTKVFPECWKKAIITPIPKQSNPAQPKDFRPISVLPAVSKVLEKILLSQIAEHLDNPNAPLLAGQQSGYRKGHSTTTALAKVTHDLYENLDNGRCTVMVLVDFSLAFNCVKHQKLRTKLQSEFRFSRAACDLISSFLARRKQSVRLADTLSGERDVPDGTPQGSCLSALLFSLYINSLPSTLKCSYHLYADDLQVYTSGPSADVDTLVRAINEDLEAIARWADANWLAPNPKKTQAIVFCKTGIVEPQTNITFCGQTVPLSETVVNLGLKLDRNLTWKPQVNDVVMKTYNVLRTFRRFGSVLSTQTRLKLVQAVVMPIFSYGDIIYTPGLSAALKGQLHRCFKSTVRFVYGLRRRDTTAAVRDNILGVDLPSNQRLRICCFMRQAYHGSLPEYIQQHVQRGQLERARCFIIPRHTTSSGKSVLVYGATCWNGLPIEAKTKTTLFSFKSCVKQLV
>L2-1_BM_pol#LINE/L2 257-3202 [Bombyx mori]
MTDMLNCSDSSDYLSITSSSSGSEDSFLSIPSLAETLDSNFSDVPRNLNVVHINAQSIPAHFSDMLVSFDIKNIHAVLVSESWLKPSLPSISYSLPGFNLIRNDRIGKGGGGVAIYLRSHIPYTIVSASDQSPLPNVSEHLFIEVGLTHAKILLGVFYSPSLHINYFSSFEKVLEDLLPCYEHTIIMGDFNTCLLKRDHRSSSLESIVTSSNMHILPLSATHHFPNSSPSLLDLILVSSLEHVARHGQCSADSFSYHHLIFLSYKIRPPKRKPTVILQRNFGRMDMDAFVADAKTVDWEPVMAASSIDDQVAIFNSLMIXLYDIHAPLRAIKIKHQPAPWITDHIRDLKRRKSAAKTKYKLRPTEFNRTRYVKIRNRCNMVCRDAQRRHIHDSVKVEDPAKVWKFLRSLGVGKSRQECNSTNINIDQMNIFFTSSSLLDDVVKSSTINSLSNITAPDHSSFKFRQFTACDVRRSILSIASNAIGTDSISRNMVIPLVDILLPILCHILNXSISNCVFPSVWKEAQIIPLPKKPNPKSFSDYRPISILPFLSKVLERLIHNQLSSFLNSHDLLNPFQSGFRPGHSTVTALVKITDDIRLGMENGQLTVLTLLDFSNAFNTVDFDILLAVLRSFNISPTVIEWFRNYLYGRRQCVRLGESISSWCNTSAGVPQGGVLSPLLFSLFINSISCNLTSSYHLYADDLQLYCQAPLPQLHDAIRTMNSDLRVLSEWSNAYGLKLNPTKTQCIIVGSQRTCSKIEWTHLPQLSLDGINIPFSDTVKNLGVIIDRSLSWGPQLVSVSRKLFSSAGSLRRLRNFLPTSTKIALAQSLLLPIIDYADASYLDLTEAQLNKLERLQNFIIRFIFGLRKYDHVSEYRVKLKWLPIRYRRNVHILSLLYSVLFNSSSPRYLQERFDFLHTASSHSLRSSENLMLKFPAHGTSFYDHSFAVEAVRLWNALPLSVKQSSSPEIFKSRLKSHYFASMI
>L2-1_NVi_pol#LINE/L2 389-3237 via tfasty with L2_Plat1i_pol, 1 frameshift and 2 stopcodons. Bit of N-term missing. L2-3_NVi_pol near identical over large parts, but containing foreign insertions. [Nasonia vitripennis]
HNHHQXHPPRLHLSLSEGLRVCHFNANSLTGHIEMIRLFLSTRSPFHVIAVTETWLNDKITSIPSLDDYILYRRDRNRNGGGVALYIHKSLTVSVISSSDGEWSGKPGKPEYLFCEVSAKGVSPIFVGVVYRPPHAPFFQGSNFIDQLTTHMHNYSTKVIMGDFNSDQLSSSEDANFIRAFIDENSLSSVPYGATHHKQGSDTWLDLCLIDEQDRLLSRWKTDTPFINGHDLITATLDVQIPRYVPNTYSYRNYKGISAEKLRDFLSACDWSSLTTSSLDECISILNANLTNAINHLAPLRTVTPRRKRHPWFTTALRDLVSERDGLYRRFRDSRLDSDLRIYRLARDDAHRQVEEARLNYYYSRLSTLTDVAEIWRELEKLGISASKAPSPSRFSTDELNKHFSSISNDPPAPAVEDYLLTLESLDLPEHFKFSTITESDVLAAVSHFDTQARGSDGIPQVVISKALPVLAPLLCQIFNLSLSESRFPSAWKLSLVRALNKVSSPTALTDYRPISLLCFLSKALEWLVHRQVSEYLESRLFLDNLQTGFRTGHSTQSGLIKLTDDVRVGINKKKVTLLLFDFSKAFDTVCHVRLLRKLSTFGFSKQVIRWFASYLTGREQAVVGDNSERSSSRPLNIGVPQGSVLGPLLFALYINDIGFCLDSDVSHLIYADDLQIYSQCHLEELDSxSNKMSANAERIMGWAAQNRLKLNVIKTKAIVLGSPYYINALPSVANTFINIGGARVNYESSVRNLGLVLDSKLTWKEHVTQMCKRAHSLMYRLYFFRKSTNLRLRKHLVQALLFSIIDYCSLVYCDLTQELDTKLQRLVNAGIRYIYGVRRDKHISPYRRELQWLTTAGRRKxLFNSAVPSYVLAYFDFRVALRPVRGEVTPLDIPTFATETLRNSFHISASYLWNDLPSHIRNTTSITSFEKLAKEYFFELENTSCTHTH
>L2-1a_Cis_gag#LINE/L2 100-795 [Ciona savignyi]
QARNMNTMESALMKKLEELDTALAHIKSKQDKYESNCSLRPDTAPPVPVSDSTHPKELQEIRKSLNDLEASLKDLKAVVRDTDERLDNLEQYGRRNCLIIHGCKRXPQXNFISYVLSILNRLKLPYTISKAAIDIAHVLPSKRDSTPIIVKFVQRMVRNDVYDSKKHLKGTGMSMTESLTLRRLRIVEKAREAFGFRSVWTNNGVIFTVHQNTRRVIHRLSDISSILARSK
>L2-1b_Cis_pol#LINE/L2 855-4205 [Ciona savignyi]
LLIMQTISIRKNACLNCSKTIRVNQNFIYCDNCNANFHCKCLPTPPKQQLNIKKNVTTLHHKWFCDNCQDPPCLPFSNIPDLELSSLLSISSSQTNPDQVTRLTLDPEKLNNFFDNLNENMLDEEDELTSIRCPESYVNTNQCKSFLFEKHQGLTILSLNIRSLANPNNFTKLEALVASLQFKPEVIAITETWIVDNRSGHYSNLPGYVFVGNSRSKSRGGGVGMYIRSHLEFQIKDCISIMEEKVFESLFVVFPTLTPHXKPNPKSSLICGVIYRSPKLDKQSNSVFMHKLSESLEKIDNRNCNCIIVGDFNYDLLNINNNTVTDFTNTMQDFCYESIINKPTRFTDSGATAIDHIWTTIKPPLVKACILTDTLSDHLPVILALRPNSENNSKSNGSQSSSRSFSDANIVSFNNNLQHLNTDNIFCESDPNLAYSNLIEQYNTEFENSFPLVSNKAPKYHLKWFNEEVKELNKTKQKLYKKYILKRTVSSKLEYNKARNLYHHKIQAAKKCQYRKIFKTNRNNIKATWRTINELLGKSKPQISKSFEIDGLSTSNPIHIANHFNDHFSNVATELVNRIPPSTSHHTDYLKSQSSSTMYIFPTSPHEIKTIILDLKSKSSSGLDHIPSKVVKSTPVNILQVLSYIFNLSLQSGKFINDFKIAKVIPVFKKGKHSLINNYRPISLLPSFSKIIEKLMYNRTHSFLSHNNVLHNNQFGFRKAHSTSHASNLLVNIISDHLENKKSVIGVFLDLSKAFDTIDHDILLNKMSHYGIRGVALDWFTSYLSNRQQIVDFNGTLSSNLNPVKLGVPQGSILGPLLFLIYINDLPNCLTHSKAIMFADDTTIFTPGRNQSITCDNANADLDRLYTWLSSNKLVLNTDKTKYMYFSNSTKSTSLPPPLISINNYKIEQVNSFKFLGLTLNDNLSWKPHMQILHKKLNTNLLMVRKIKPLVDQPSLLTLYHSLILSHIHYCISTWCYGNNQMLTKLQRVCNKFIRLIFNLGKRENTVSIMRQHGLLTIHDMHKLEILSIMHKCHNNTLPPALHNCIPNKPKTTMKTRSNSQFLIPFCNKSLSQQSLKYIGPKFWQQLPNNIREIKSLKKFTKVVKQHLLEDPHPLP
>L2-1c_Cis_gag#LINE/L2 77-778 [Ciona savignyi]
NRKMESLLMEKLSKMEETMLAFKGKQEGLEARFEKEPDTAPSLNIAGSSDRRKEILEMRSSLNALEASFKELKALIERTDERLDGLEQYGRRNCLVLHGCQGIPNNRDQFLKYILNXFNKMXLPYPIVPAEIDIAHVLPTKENRTPIIVKFVRRMVRNDIFNSKRCLKGTKMAITESLTARRLRIVEKAKEVFGFRSVWTXNGAVYIMHNNKRQVLHRLSDITNILASTPGST
>L2-1c_Cis_pol#LINE/L2 832-4155 [Ciona savignyi]
TSRMPPSKRKTCLICSKLIRINQNFVFCDSCHSNSHLNCLKNTHLSLNANNIKKNIYXSHCNWLCNTCSSESHLPFHEISDSELSLLLSPSTTAQINLDPSKLNSFFNYLDDDVLDKEGNEETTIGCPELYITSNQCKPHMFESEQNFSTLSLNIRSLANPHNFSKLEALVLSLKFKPEVIAITETWIVGNQTGQYSNLPGYVFVSNSRTEHRGGGVGMYIRSDLDFHVKECLSVMEERVFESLFVTFPNLLPQPTPNSKSSLICGVIYRPPRSDSESNSFFLENLLKLLEKIETRHSQCIIVGDFNYDLLIGNNNHINNFKDAMHENCYQSIINKPTRITDSGATAIDHIWTTIDSSFIRAGILTDSISDHLPVIMALNTKTDNKSSIIQSKSRIFSQSNMSHFNTAIQTMELDSIYYESDPNIAYSKLMTLYNTKFDSSFPLVKITSDKSNTWFSEDIQKLNKIKQKLHKKFIQKQTEDSKLKYHSARNIYNRKILESKKAHYRKLFDFNKKNMKATWRSINNLLGRLKSKNPRSFFVDGVRTSDPKCIANHFNNYFSNVASGLVKQIPKSXCHHTDYLGTQSPSSMFLFPTSPSEIKTIIKDLKSKSSSGMDQIPTKLIKSTPENILLALSHIFNLSIQSGEYINAFKIAKVIPIFKKGKPTLINNYRPISILPSFSKVLEKIIYNRTSAFLTRNCFFNNQQFGFRKGHSTSDACNVLVNIVNEQLEKKKSVIGVFLDLSKAFDTIDHGILLSKMSHIGIRGVALDWFGSYLSDRKQIVDFNGVLSSHMNPVKLGVPQGSILGPLLFLIYINDLPNCLKHSQTIMFADDTSIFTPGVNQSVIYKNVNDDLGRVSSWLCTNKLILNIDKTKYMYFSNSTKPVPQPPPIVINNYPIEKVHSFKFLGLTINEHLSWKPHMLTLIKKLNTNMLMIRKIKHLIDRPSLITLYHSLIVSHITYCISTWCYGNNQLLNKLQRICNKYIRMIFNLGKQENTVRIMQQHSFLTIHDMHKLEILSIMHKCKHHNVPPSILQCIKLKPMTSGMSTRQKSRFIIPYCSKTTTQQSIKYIGPKLWHQLPTSXRDIKSFNKFIKVVKQHLLDDPHPLP
>L2-2_Cis_gag#LINE/L2 58-924 [Ciona savignyi]
YLNKYNLNKPCKKIMSPATPKKPAATTTLIAKMDNVLEQVCANKQELNSKLNAVLTELQDIKQSQAFLSKKYDALLNQSNKTNEEMKNMKLENATLKNDIEEMKNEVKLCKKSINALEQYGRRDCLEIKGVQYNDQENTDEIVIAVAKSIGVNITRSDISISHRLGPFRTATKNNQPTTIIAKFTSRKSRDNVYNNRSKLHKPYTPGSQQSRIYINESLTKENRRLFNNCLQFKKSNNYKFLWTRNGVILLKRDDASKTITITDEEDLQRNEIPINITSNHPVTSNIV
>L2-2_Cis_pol#LINE/L2 947-4165 [Ciona savignyi]
YSIYKIMADKIISQQCLMCQECCTDNQDSICCDQCNNWMHLSCTSLTKSQFESLGCSQDPYFCSLCFHNTQSQNVSPNNNVNKSFSESNSLHACEDDDDNLSFNGNSLYYGQDRLNGLMMSCASHVSIFHFNIRSLAKNKYRIEEFITSLPTLPYFIGITETKISKLSLNNYEIDQYNFIHNDSLTHAGGVGLYIRNDISYLIRSDLELEIDHCESLWIEVKIKKISSLIIGVIYRHPCYNFQNFQNKLCETLSSTKVINKDYLLCGDFNINLLSSNRQESVANFEQSLKSIGCTNIITQATRFSYNSIPSLLDHIYTNILTELTGGICLFDASDHLPTFCIIYGIQISYTNSSKYVKIRCMKNFVVEQFLNELQNIMSVATSEKNNTVDFLFERFVNNFQYVLNKHAPLCNLSRKQKKNLYKPWITKGILKSIKHKNCLFRACYKHNDIEQILYYKKYTNHLTRIRKLSKQQYYFNIFHENRYNPGKTWKTINEIIAHRNVSKHSISEILLDNGTKTDEPEKVCEVLNNHFASIGKTMASTISDPSVKFSSFVHSSVHSFYLEPTTSEEVSQCISNLKINNSCGPDNISSKFVKMANSIISPILAELFNKSMDQGAYPKCLKISQIIPIPKCRSPKTVNDYRPISLLPTFSKIFEKIIHFRLYYYFNKYDLLTPCQYGFRTNHSTELAVTSIHEQMLSNLDSGKITCSIFLDLQKAFDTIDHSILLQKLFLYGIRGVQNDLFKSYLSGRLQCTTVGNIRSLYKSVDCGVPQGSVLGPLLFSIYVNDLPTSSNFQTTLFADDTNLHMCDFSFSNLQYRVNLEVNKVDVWLRANRLSLNHSKTVFMLIHNHKNNYQFNVVINKKPVQQTNNIRYLGVILDHKLKWNMHIMNLRDKLSRVCGVFCKLRRYVKQNTLRCVYFSLFHSHLQYSIINWGRANTSAIHPLEMLQNRALRHILFRSNRDHASPLYNELKIMKXHDIFIHEIGKFVYKFSNKSLPSYFNHFFTPLDAMHKHATRQKDIGTFYHPRVRTNYGKSMLQYLGPCVWGEIPNDYKCMSFNLFKLRFKQYLIQMY
>L2-2_NVi_pol#LINE/L2 1047-3104  [Nasonia vitripennis]
FRQALCHRCLARHLDLLSCCDWTAMNSIETDLEGALCXLNNNIKLAIDELAPLKTVCPRRKYAPWSGPELLFDEVLRLTNEVDMRSAQERESFLRQLSDALDENRNIWKVMRHLGLLPGRKEEEFFGFTPGELNEHFAGVSVSPLENIDNATDTILLASEEGFTFSPVSMSDVVLAISHFSSQARGVDGIPCGVXVKALPIIGEFILNLFNCSFAQGIFPSIWKQAQLIALRKTSAPSNVKDFRPIALLCFLSKVLEKIAHAQITEYLNKNHILDPFQAGFRKHHSTQTALLKLTDDVRMAIDKKKVTLMLLFDFSKAFDTISPSKLLSKLRQLGFSRAALLWIKSYLQGRSQMVISNKNGTSEWLETNLGVPQGSVLGPLLFSLYVNDLQNILDGNTIKHLFYADDLQIYLHTNKDNFLDGVARLAEAARLVSGWAESSGLRLNSGKTKSIFFGSMKNVNDIKSWNLPGVPLPDGVIVPFSETVVSLGVVLDSKLTWKPQVDAITKKVNKALYSLRFIRGCTTETLRRRLVETLIQPHIDYCTVTILDASNEQRIRLQRLSNSCVRFIFGVRRDEHISPYRRRLEWLRTDSRRLYFEAILLYKXIRIGEPSYLASFFNKHKPRPSSRGVPPELSIPTVSTETGARAFQVQGARFWNSLPSTLRNLPSLASFKGALRRHLLATES
>L2-2_NVi_pol#LINE/L2 389-3101 via tfasty with CR1-8_DR_pol, 1 frameshift and 2 stopcodons. About 60 AA missing at N-term. [Nasonia vitripennis]
LARPPDNAPGXGSGLRAGFLNVNSLRARIEIVRNFLTERPSFDIFGFAETWLGPIVDDSLVSIGGFSIIRQDRNVNGGGVALFVRNGLKIKKLASSDTMGLGKPGIPEYLFCSVQRGDSPPVLLGVIYRPPKIPMQKDSDLFDVLRDLCDEFSHKIIMGDLNSDLLSDxRCYYQASVELSLQIIRHGPTHHTSSSHTWIDLIMTDETTRSWTLRMSGCLVSASIVSxMSARHLDLLSCCDWTAMNSIETDLEGALCILNNNIKLAIDELAPLKTVCPRRKYAPWSGPELLFDEVLRLTNEVDMRSAQERESFLRQLSDALDENRNIWKVMRHLGLLPGRKEEEFFGFTPGELNEHFAGVSVSPLENIDNATDTILLASEEGFTFSPVSMSDVVLAISHFSSQARGVDGIPCGVIVKALPIIGEFILNLFNCSFAQGIFPSIWKQAQLIALRKTSAPSNVKDFRPIALLCFLSKVLEKIAHAQITEYLNKNHILDPFQAGFRKHHSTQTALLKLTDDVRMAIDKKKVTLMLLFDFSKAFDTISPSKLLSKLRQLGFSRAALLWIKSYLQGRSQMVISNKNGTSEWLETNLGVPQGSVLGPLLFSLYVNDLQNILDGNTIKHLFYADDLQIYLHTNKDNFLDGVARLAEAARLVSGWAESSGLRLNSGKTKSIFFGSMKNVNDIKSWNLPGVPLPDGVIVPFSETVVSLGVVLDSKLTWKPQVDAITKKVNKALYSLRFIRGCTTETLRRRLVETLIQPHIDYCTVTILDASNEQRIRLQRLSNSCVRFIFGVRRDEHISPYRRRLEWLRTDSRRLYFEAILLYKIIRIGEPSYLASFFNKHKPRPSSRGVPPELSIPTVSTETGARAFQVQGARFWNSLPSTLRNLPSLASFKGALRRHLLATES
>L2-2_XT_pol#LINE/L2 723-3932 [Xenopus (Silurana) tropicalis]
MTKLTSFLLIVCMVLPKVVSSFNPPVACPYSIHISSSLLPSTYSGSFTLYNYLRHLCPPVTVRMRRRNHFKSSAHVFSLLFLLLLAAGDVSPNPGPCSIPTYIRPRPSVPMPKTCRSAVSNLIQVPTLPSSCLPFSCALLNVRSLTNKATLIHDLFCSKSFHLLALTETWLLQDDTATEAALSHGGLSFSHTPRTTGRGGGVGILLSSRCRFAPIPIPPAFSFNSFEVHALQIFHPLSVRVAVIYRPPSASSPATFLSDFETWLSFFLSTDGPAIILGDFNSHIDDPSQPWPSRFLRLTSSFELQQWTNAPTHKDGHFLDLVFTKNLSLSDFNSVPFPFSDHHLVTFSVSHSPSQPAPSPTVLIRNTRDVDLPALARSFRSSLSSFNEMSDPDTLVSEYNSILASTIDLFAPLQPKRTRVQNPRPWLNVHTKFLRSCARSAERMWRKSRTQADFIHYKFLLACLNSALSKAKQEYYNTLINNNKSNPRRLFSIFNTLLRPSQTPLPHFMHSPQDFADFFMNKVESIRNQIPPSTNTNQLLLPQPPSACLSSFGPVTVSEVSRLLLSAPLTTCSLDPMPSSLLKHCAAELTPALTHIFNSSLTSGSFPSSFKQACVKPILKKATLDPSCLSNYRPVSLLPLASKILERIVFSRITNFLNAHNLLDPLQSGFRPAHSTETALCRVTNDLQVAKAKGHFSILILLDLSAAFDTVDHSLLMQILHSIGLRSQAASWISSYLSNRSFTVSYANKTSSPVPLNVGVPQGSVLGPLLFSLYTLSLGDLIRSFGFKYHLYADDIQIYFSTPSLTVETETQISNCLLAISNWMNQRHLKLNLTKTELMIFPPKPGPTPPFSISIDGTLINPVDSARCLGVIFDSSLSFSDHINTTVKTCHFFLRNIAKIRPFLSTATARLLMHALILSRLDYCNLLLTGLPNSHLSPLQSILNTAARILLLSSRRVQALPLLKSLSWLPIKQRISYKLLLLTFKALHSSAPHYISSLVSPYVPGRLLRSSQSNRLVAPPTTTAVSRLKPFCLAAPYIWNALPDFLRRESSLSLFKTKLKDYLLEHSPST
>L2-3_Cis_gag#LINE/L2 3-896 [Ciona savignyi]
FYLNKISDFTLMLNLMNKIDLSKKMNNNTAGNSGKEKTGKRSTSALTSSVELVLLEKLNDFQQSSEARFLTVINDLQEIKASQQFLEARYEEIKIEISDHNKQLKKLKNENGNLKERIRELENKSLENSNTIDALEQYGRRECLEFHGISSHADESTDDLVVATVRKLGLSINKSEISVSHRLAKPSHDRPRPPIIAKFXSRKVRDNIYGNRSKLRQVNENLPTGQARIYINESLTKSNKDRFMKCRTYCKANKIRYIWTRNGTTFIKEDDGSSTICIKSDKDLQHLLKQVPLLKTT
>L2-3_Cis_pol#LINE/L2 941-4204 [Ciona savignyi]
MTVKYPCRICNLPCKSNQNSIACDICNYWLHAKCLNINEHDLANFATDQLPYFCPVCMEENVPFQAIAQNTFIETISSHAMHSDYFQCIKNDIRNSYVENETIESISSSEYYTVDKMTELNRNNDFCIIHVNVRSLQKNYDKLYQCLLEASILPDVIAVTETKIRHSMSNGMLNINIPGYNFEHADTPTFAGGVGLYIKQSLSYTMLDTTMCIAPEQCEHLCIKVRNMDKSCIVGVFYRHPSAIFSLFQTSLSNLIDFLNPSKCNLYLCGDFNIDLIKCSTNHNINNYYNTLCSCACKSLITNPTRVTPHSATLIDHIYTNDYKHEIISGILITDISDHFPTFIIIKSKNQHVKPSKQYFRNMSNFNEENFLDELHNKLSREFPQNLLNIDGPSVNTIMASLLCELEELINKHAPLRPVSNRILKLKKKPWLTKGLLKSIKIKNHMYHKIMRMRKLNLGSEHDFSQYKVYRNKLNHLIASAKLMYYRNRLHLYNKNTAKQWETIRELVTFKSKRKCGPSVIIGENNEIISDSFQISNKFNNFFSTIGSAMASSIPKSNCPPQQHMKWASSSLFLYPIVPDEIHNLISNLDCKKAVKQSDIPTKFIKLSASVLSPILADIFNSCIQTGTFPDVLKIAEVIPIHKTGATDRCTNYRPISLLSQFSKLFERLLYNRLYDYLIKFNLLSPHQYGFREQCSTANAVCDVYNQLLLNSENKFYSCCVFLDLSKAFDTVDHQILLGKLNYFYGVRGTPLLLFKNYLINRYQYTYVNTVKSESSMITCGVPQGSILGPLLFLLYINDLPCASNFKTKLYADDTVLFLKDKSLNELETKTNNELLKVTEWLHYNRLSLNHSKTNYMIINPFKYCSTTDFKVVLDGTNLKRVNSVKYLGVYIDDKLNWNEQIKCLEKRISKYCGIFYKIRRYLDIRTLRLLYFSFIHSHLQYAIICWGAANKTVLKPLNVLHNKIIRIITSSQRSCSVTPLYQKLYLLKLNDIYDLEVGKFMHKLFNNTLPQPLQLLFKKINTVHCYDTRQTKTTVYFHPSFTTNFGTKTILHNGIKVWKLISESLKHASYSVFCKQLKVQLISNYI
>L2-3_NVi#LINE/L2 936-1778 Probably missing N-term, via tfasty with L2-5_NVi_gag, 2 frameshifts. [Nasonia vitripennis]
MLKWRPSRPRTSCRRGFLKLSSGLGPLEKRLKALDELPALKTRIHNAESTITELQAQIQDLSSRSPTMQQDNGSTVPNTAEICSLRSELAEVKRRQEQTSNCVVVVTGLHYTRETSLHLLAFSVVNALDPTVLRRDVASVRTMGRLDATNSSARGDGRLPPLAVTLSSSALARSIVIAKARKRKLHTSELDATLLEEAKALSPDHQGLININELLPSDVHKLRTRARLEAKKRQGCRTFVREGRLYIMRCNDDSERATIINTDAELETFLARFPPAANIVQH
>L2-3_XT_pol#LINE/L2 1042-4303 via tfasty with L2_Mars_pol, 1 frameshift. [Xenopus (Silurana) tropicalis]
MFYPALLLFALSCFLKHLQPHPPSSQKGITITASLLSSPSLSAHEVFKLLCSITPVNSFSSHKTKTYKSRSHLAFLSFLLLAAGDISPNPGPYPIPVLLGTRSPNPPCTPLKYRTLTPIPKASIQISCALWNSRSVCNKLTSIHDLFIAKSLNLFAITETWLSPTDTASPAALSFGGLHLTHTPRPGNRAGGGVGLLLSPRYSFKVLPPPPSLSFSSFEVHSIRLFSPVSLRIAVIYRPPGPTSQFFDNFSAWLPYFLHIPTSWTDPQFFDNFSAWLPYFLSSDSPSIVLGDFNIPVNNPNAPATSKLLSLTSSFGLSLCSDSPSHSNGNSLDLIFTKCCSTSNFTNSPFPLSDHNLLTFQLSLTPSTPSAVPQTYTYRDLQSLNTSHLSSSFDSLHSNILTVSCPNQATSVYYSTLTTALNELAPAKTKRMRPKPLQPWHTAHTKSLQKQSRTLERRWRKSRSESDFCSYKSALLSYNTTLCQAKQTYFTALINSLSKKPAQLFSTFNSLLSPPPPPPCASVTAQAIAEHFKNKIDTIRSDIAQLNPHNHSPPSLHAPQSLLGSFSPVTEEEVSKLLSSSHLTTCPLDPIPTKLLRNANPCLIKALTHLFNLSLSTGIFPSQLKHALVTPILKKPSLDPSNPTNLRPISLLPFISKLLERLVYNRLTLFLSDNNLLDPLQSGFRQQHSTETALTRLTNDLLSAKAKKHYSLLILLDLSAAFDTVDHPLLLQTLRSLGLRDTALSWFSSYLSDRSFSVSYNGESSSPLPLSVGVPQGSVLGPLLFSLYTSSLGKLISSFGFQYHLYADDTQIYLSSPDLNPELLTRVSSCLSAISTWMSQRYLKLNLSKTELVLFPPSNAHIVPEVSITVNNSTITPSSQARCLGVILDSALSFTPHIQSLIKSCHFHLRNISKIRSFITQDAAKILIHSLIISRLDYCNSLLIGLPLQRLSPLQSIMNTAARLIHLSNRSSSAMPLCQSLHWLPLPSRIKFKLMTLTFKAVHNSAPPYISELISRYHPTRLLRSSTDLLLNSSLIPSSHARIQDFARAAPLLWNSLPQTVRLSPNLSAFKRSLKTHLFREAYPNLV
>L2-3b_Cis_gag#LINE/L2 57-905 [Ciona savignyi]
IDLNKKMHKNTGAKLGKEKTGKPNELSFFAELXEKLDNLTADLKLGQQSSEAKFLTVINELQEIKAGQNFLTARLEEIKIEISEHDKHLKKLKNENGILKERIKELENKSVENSNTIDALEQYGRRECLEFHGISSHADESTDDLVVATVRKLGLPINKNDISVSHRLAKPSHDRPRPPIIAKFLSRKIRDNIYGSRSKLRQVNENLPTGQARIYINESLTKSNKDRFIKCRTYCKANKIRYIWTRNGTTFIKENDGSSTFSIKNDXDLQHLLKQLPLLKTT
>L2-4_NVi_gag#LINE/L2 1105-2313 [Nasonia vitripennis]
MLDLFSNQFDLLERTVGDLRTLFVGKLDAISQRSDPGPAASEMIDRLVDRVSSLEEKVVMQNSKLEELHDDRFLLSQENKILKDKLEELTRVMLKVENFVDGARSGRDDGSSNTSPSNSTGGDANNNNNNECDFDASRVFVSLRDIESADANGGAGASTSTDTDDFEVCKSRRRIRGRKCRGRVCEHSAGGQSSSTDGLSSVESTTEIIVSNIFDGSEQERGDVAHAILSTVLPSVARDDIISTRLLRANDDSRRLSPWVVRLSSGAVVKEIMRAKHRITGLNTRHINVSHMPSETSNSLVQSKIFINEMLSKELFLQFNSLKSLARGLGFKYVWHRGGRFLVKMRDGELSHSFKTAADLHAIAASYDCAISTKNCVNSGNVRDVDAASLDSQTVTSEKTSNN
>L2-4_NVi_pol#LINE/L2 2317-5127 via tfasty with L2-1_NVi_pol, 4 frameshifts and 5 stopcodons. [Nasonia vitripennis]
LDRGRVTGAECXGFRAGFLNATSLYAHMGMFRQFLDTAWPSYHIFGVAETRFGHEVDDVFVRIDGFSIMRQDRNKRGGGVALYVRNDYKATLLCSSPTQIEGKPGIPExLMCSVQQGTLTPIFVAVIYRPPGISLENSNFTDDLRNYSVGYDCRIVMGDLNANMLLASRDAEFFRELACEMNLKLVNHVGDSHTWIDVIFTDDDNVVLNENNSLATFPSKHNIIDVxINFQTVELPALNSFTYRDFKSINTGELLSLLASCDWSMVNCPDSGVDTRLEHLSQNIISVIDQLAPLKEYKPKKEGLPPWVDAELINQRDAVKRRHKQARRDTPRRDELxMEYQSLVTEAEERTAQARETFIQNRIFDALDNDKNIWNEFRNLGLITKAKNDLHGFTPDELNAHFAGVSNIRPRAxDRSDIMSEASEGGFTFREVTFSDVVLAVAHFSSQAKSEDGIPQSVIAKSLPVLGHHLVALFNASLSSGIFPGAWKGALSKVLEKIVHDQISEHLESRKILDPLQTGFRSNNSTQTALLKLTEDIRTGIDSDKQLLTILLLFDFSKAFDTISPSKLLRKLIGMGFSRAVVLWVKSFITGRNQRVVTTSNGESDWLTTNLGVPQGSILGPLLFSLYVNDLKDVLTDFERSERPEELLTNSVAHLLYADDLQTYTQCTRDNLRAGMDRLSAVARAVSGWASDNALHLNTGKTKAIIFGSDYNINQLQGLNLPGIEVRDGIFVPFVDTVTNLGVVMDSKLTWKAQVDAVSRKVNRTLYGLRSFRSCTTEALRKQLASALAVSHLDYCSVVYLDVSEELQTRLQRLQNACVRYICGAGRREHITPYRKKLGWLDTKERRRVLCGGVSVxSLLHGAAAVPCGPLKKKQYRTSSRVSRDISVPGSRTDVGLHSFAVYGASLWNSLPQGVRTLPSLAEFKRALRKHLMRNDL
>L2-4_XT_pol#LINE/L2 188-3430 [Xenopus (Silurana) tropicalis]
MLSLLSLQLSTFFLLLRAKNSFTTFIAPDTVQIAPSLFPSPSLCSHELLSLLRSLIPSPHTTKHKPRAFKSRSHLLSLTLLLLLAAGDISPNPGPPPKLCSYTHPTPNSCSPSNSHSAHLQKGRNTDNLINIPIIPATPAPISCALWNARSVCNKLAAVHDLFISRGFQFLGITETWISPTDTVTPAALSFGGLQLSHTPRPGNRHGGGVGILLSEHCSFQPIAQIPSLAFHSFEVHAVRIYSPFALQVAMIYRPPGATSKFLDDFSAWLQSFLSSDIPAIIMGDFNIPIDTKRSPTSKLLNLTFSYGLKQWVSEPTHQDGHTLDLIFSHLCSLTNLLNSPFPLSDHHLLTLTLSLSHTTLPPPNPTARRKNLHHINLQHFSSTLQPVLSSISSFTDPEPAASFYNHTITTVLDNFAPLSTHHPRRTNRQPWHTKHTKQLQRQSRRLERRWRKNNSRSNFDHYKNALHNYRDALSSAKQSYFANLISTQSRNPKQLFNTFNSLLHPPTQPTAASSITSEDFASYFIDKIQKIRTEINRNPKDITLSNIPSAATFLASFPALTEETVSLLLSKAHLTTCSLDPIPSHLIPPLSPIFTPTLTSLFNLSLSTGIFPHSFKHAIIKPILKKPSLDPTLPSNYRPISLLPFSSKLLEQHVHNKLSHYLTSNSLLDSFQSGFRPHHSTETALTKVANDYLLPKQRATTLLILLDLSAAFDTVDHSLLLHILSSLGIQDKALSWISSYLSNRSFSVSHSASTSTPQPLSVGVPQGSVLGPLLFSIYTTGLGQLISSFGFHYHLYADDTQIYLSSPDLPSLLARVSNCLTAISAFMSSRHLKINMDKTELVIFPPSNSVSLPDITVCVENINITPVPQARCLGVTFDSALSFTPHIQTLSKSCRFHLKNIARIRPFLTHETAKILIHALVISRLDYCNSLLCGLPLSKLTPLQSIMNSAARLIHLSSRSTSAAPLCQSLHWLPVTYRIQFKILVLTFKALTGAAPLYLTTLIPKYTPRRNLRSTHDLLLSSSLITSSHSRIQDFSRAAPILWNALPRPIRHCQTLQAFKRSLKTHLFTQAYNLNPPNIH
>L2-4_gag#LINE/L2 100-792 not in repeat database Perhaps: [Ciona savignyi]
MEATMLGKLAAMEEAMKNIQGKQEIIEAKLDNKSPDTAPVSSISDSTVTAREVAEMRSSLNGLEASMKELRAMLQRTDERIDDLEQYGRRNCLVLHGCQDIPKDHRFLGYVLAIFNKLPLPFPVSPAQIDIAHVLPTKNGRTPIIVKFVHRIVRNQIFAAKRHLKGTKMAITESLTARRLRIMEKAKEAFGFRMVWTINGVINAMVNDKRQVINRLXDITALLARNSSST
>L2-4_pol#LINE/L2 892-4206 not in repeat database Perhaps: [Ciona savignyi]
MSTPKRCFCQSCSKLIRINQNFIKCDNCKSNYHYKCLTDVSNYSHISVNNIKKQLAPSISNWLCDHCSFEHCLPFSTISDTELSLLLTSTSSYGNLDPNKLNLFFNDLDYDILNDGDEVTSVRCPELYITSEECKSHLFTNHQGFSTLSLNIRSLTNPNNFNKLEALVSSLKFKPEVIAITETWIVANQTGHYSSLPGYVFLSNSRSKSRGGGVGLYIRSDLNFQVMDCLTVMEERIFESLFVVFPDIFPQHSTKLKSSLTYGVIYRSPKLDSESNALFLHNLSNTLEKIESRDSQCILLGDLNYDLLKENNNNNITNFTNLMHDYCYQSVINKPTRITDSGATVIDHIWSTFDPTILKSGIITDSISDHLPVIMTINTEITKTCTELPSRSFTNLNTTIFNNNIQNLDLHEIFCESDPDTAYXKLIDQYNVEFENCFPIIHLKSKKAQNQWYTIKIAQLNKTKQKLYKKFIRKKTMQCKDEFVTARNIYNREIRGAKKNHYRKLFESNRKNMKATWRSINSLLGRXSQPTSKXFEINGRMTNDPVTIANQFNDHFSNVASELVRHIPXSTSLPSDYLGPQSPSSIYIFPTSPLEIQAIIHXMKSKSSSGVDNIPSKLVKSTPNNILQALAHIFNLSLQSGKFVNAFKSAEVIPIYKKGKHTSVNNYRPISLLPSFSKILEKLMYNRTHSFLKQNNFFHNHQFGFRKGHSTSYASNVLVNLLSDQMEKKKSVLGVFLDLSKAFDTIDHKILLNKLSHCGIRGVALRWFTSYLSNRRQIVNFNGVLSSNTNSVTLGVPQGSILGPLLFLIYINDLPNCLKHSETIMFADDTSIFTPGPNQSVICQNANNDLERVSTWLSTNKLVLNIDKTKFMYFSSSTKPELLPSSIIINNYQIEQVNSFKFLGLTIDNRLSWKPHMLNLAKKINTNLIMVRKIRPLIDRSSLLSLYHSLILSHIQYCISSWCFGNNQILAKLQRVCNRYIRMIFNLGKRENTVKTMQQHQLLTIYDMHKLEILSIMHRCNYQKLPTALLXSIQLKPMTTRMTTRSKTKFAIPFCSKTISQQSIKYIGPKYWHQLPIKIREIQPHHKFIKAVKQHLLNDPHPLP
>L2-5_NVi_gag#LINE/L2 475-1554 [Nasonia vitripennis]
MNTPPARPRPRRRELNQQQRQQQQIHLPRARLERMCPKRINRHPHRLLAPEPNRLREHRLRLSRRPLRTSSRRWMTFGRSRMRPFRHKTPCLKGSLELRKGLALLQSRLKALDDLPALKTRLNNVESSISELQAQYQELSSRSPAEQQNISIAPASEEINNLRSELAEVKRRQERSANNVVVISDLAYTQETSLQLLAFTVLAALDSTVLRRDVATVRTMGRLDATTTNAQGDSRFPPLAVTLSSSALARSIIVAKARKRKLHTSELDAALLEEARALCPDHQGLININELLPPDIHKLRIKARLEAKRRRGCRSFVRDGRIYIRSGEDSERATIISTDAELEAFLAHTPPIANTDITH
>L2-5_NVi_pol#LINE/L2 1554-4319 via tfasty with L2-1_NVi_pol, 1 stopcodon. [Nasonia vitripennis]
RHTPIIPPKPPSKSSNSSTSASKASLSEGLRVCHFNANSLTGHIEMVRLFLSTRSPFHVIAVTETWLSDKITSIPSLDDYILYRRDRNRNGGGVALYIHHSLTASVISSSDGEWSGKPGKPEYLFCEISAKGVSPIFVGVVYRPPHSPFIQGSNFIEQLTTHMHNYSTKVIMGDFNSDQLSSSEDANFIRAFIDENSLTSVPYGATHHRQDSDTWLDLCLIDEQDCLLSHWKTDTPFINGHDLITATLDVQIPRHVPATYSYRNYKGICAEKLRDFLSACDWSSFTTSSLDECITILNANLTNAINHLAPLKTVTPGRKRHPWFTAALRDLLTERNRLYRRFRKSRLPWDLYFYRIARDDAHKQVEEARLNYYYSRLSTLTDVAEIWRELENLGITTSKSPSPARFSSDALNKHFSSISNDPQAPSVEEYLRTLESLDLPEHFIFRAITESDVSAAVSHFNTQARGSDGIPQVVISKALPILAPLLCQIFNLSLSEARFPSAWKSSLVRALNKVNSPTALTDYRPISLLCFLSKALEWLVHKQISEYLETRLYLDNFQTGFRTGHSTQSGLIKLTDDVRLGIDRKKVTLLLLFDFSKAFDTVCHVRLLGKLSSFGFSKQVIRWLASYLSGREQAVIGDNNELSTSLPLNTGVPQGSVLGPLLFALYINDIGFCLDSDVSHLIYADDLQIYSxCHLEELDSCSVRMSANAERIMGWAALNRLKLNVLKTKAIVLGSPYYINALPSIANTFINIGGARVDYESSVRNLGLVLDSKLTWKEHVTQICKRAHSLMYRLYFFRKSTNFRLRQHLVQALLFPIIDYCSLAYCDLTQELDTKLQRLVNTGIRYIYGVRRDEHISPYRRELQWLTTAGRRKYFMACFLRKIFNTSVPTYILAFFDFHVALRPVRGEVTPLDIPSFKTETL
>L2-5_XT_pol#LINE/L2 1-2859 [Xenopus (Silurana) tropicalis]
RLGAVNTDLKSQESQIKAVLCNARSIINKTAVIHDLIETSDLAFITETWLSQNFGPTLEATVPKDFSVLHYQREDRIGGGVALCFKHSLRIKPLAVGPTYSFECLAAQLSAEKSINILLIYRPPGNGSDFLKEIADLLSCLVLEPRWIILGDFNAWVDTHSSQLGRELLLTMNELGFSQAVHLPTHKRGHTLDLIHSGLSISNVEINPVVWSDHHTIHFSLAEPALNRQAKDLTKYRSLKGLTPQHLQNNLNLDGLTEHSLDLDSLVHKYNCCISSAFDSIAPLRIKRSSPSHHAKWFDNSLKELKKEGRRLERQWRKHQRSKDKHSLICHQKNYQATITKKKSSFLSQEIAKAANKPAQLFRTVDRLCNPSCLKPNITSSKDLCEKFALFFTDKVSSIRSAIKSTTPKTYAEPQNGCHNNLPSWSDFQVITEEVISHILLNLRQTTCDLDPGPTQFMLKCPNLFRPAFHKIVNCSLQAGKFPTCLKEAIIRPLLKKPSLDPDNLSNYRPVSNLPFLGKVIEKAAYLQLEARLSMNNIFDPLQSGFKKHHSCETALVQICNDLLMARDRGECSILILLDLSAAFDTVDHEILLNRLQEYCGIDGLVLQWFSSFLAGRTQRVALGPFQSNPVPLKYGVPQGSILSPLLFTIYMLPLGKIIQKHGLTYHCYADDTQLYMSFKPDTTDPIPKINTCLAELQEWMNENWLKLNADKTEVLVIGGQRLTAKQLQTQSMPLRLGTSDLASSNTVRSLGLLIDGELNFRSQISAVVKHSFFHLRNIAKIKHLIPSEVLPTLVHAFISSRLDYCNALYAGLPNKDLHRLQLVQNAAARLLTSQPRHCHITPILRSLHWLPIKWRILFKIGMLTFKSLHGLGPGYLKDLLQLRHTSHNLRSNGSNNLTTPRVQLKTFGSRAFCHAAPTLWNALPNGIKTAPTLDTFKSKLKSHLFSLAFMST
>L2-6_NVi_gag#LINE/L2 884-1966 [Nasonia vitripennis]
MPVCRKCGRNIVTRAVSCYQCGLDFHAGCLARFVKSKSCSGCCLKTHKALSTPPDITSLPSRCERDSIFDAGRDLGSTSLLDISDLSIASLSSEFTRSADPASLTENRLDDSSSHSLPCSSTMSTPSNWNAMSVDDKLGELFNVITSGNTALSSKIDALAAKVDNQESRVTLLENENAKLTKEVASLKERFDKSCKYAEIKVSGIPPTCQASLHDITRAIFTKLNVANYITDVHSVRAIVSRPQSNAAEASQLSSQRAPRPLVFCIRFKSFCVRDDVLRAKRLFGPIKFSDIYPGGSDTSIDMHDMLSPFLHNLRLAVKTRANALGYKYVWVRDDKILVRKADGSEIIPIITANDLERMV
>L2-6_NVi_pol#LINE/L2 1967-4906 [Nasonia vitripennis]
QSEASIPKTVSAPARKSSKIRIAHLNVSSVKAHFNEIEILLSDNSIDVLIITETWLTPSMQSSLFSIPGYNFIRNDRGLVSSRILNPATEDDVTYVLGGGIGFYIREDLRFTLLEASYISNINETEYMLISVDCGSKILLGGVYRRPKGHTLSKFFNSLQNHSHRFGNVVVAGDLNSDLLSDNYYGNHLRNLINENNFHFVPFGATHHTDSSDTVRIDVMLSDCGDKIMHYEKSAAPYINGHDYLLIDFTFDLPEKQELLIISRDFRRFSSAAFLADLLPDLSLPAFSDPLASVNDKLVGFQQVACRALDIHAPFTARKPNRNATPWFTPDLKRRCKARDRLYSAAKLSRKRAAIIRYKTARIEVKRAIRSAREEYLLHGCSVRTKCWGFLRRNGLVSAKSKSPLHFFDKDTLAKYYSSVTCAHLVCSSDSLRAILDGQYNSLGSAFEFRFRNLDCVEVAQFMRACLSKAKGRSCDELSLSYFEQVIPQIAPFFTEVFNLSISSGVYPSIWKKSVIVPLSKCSTPSSPGDTRPVANIPHFAKVFDKIITDQVIAYLEDNNLISPYQSGFRSNYSTQTALLNVTEDIRRGADMGLLTLLLLFDFRRAFDSIDHATLLAKLKSIGFSNDAILWFHSYLTGRSQAVVGLDGTLSDFLPNTSGVPQGSSPGPVIFLIYINEIVSVLRHCSKSCMLFADDLQIYIQCAPGDIGRAVASLNEDASCILKWSQDNGLLLNVAKTKAIIVGSTQHHMRLDLQRIEPIVVDGVPIPFDDSVKNLGVILSKTLSWNAHVSRTYSNAHFALYRLRFKGYCLPTSLKTQLVNALVLPYIDYACLVYMDLPDYLAIKLQRLCNSAVRFIFFLRKDAELGPYYAKLGWLSLNHRRNYYLGITLYKIFVHKRPGYLADLFALPNEDLRRSVRNNPSAFVIPTARTEIFRNSFTVKGMHFWDSIPTTIRLSKSLGAFKQRLYVYLLSLQQCYVHY
>L2-6_XT#LINE/L2 1-1860 [Xenopus (Silurana) tropicalis]
DPDFIHFKFMLSCYNQALSIAKQLYFSSLISTLSSKPQRLFATFNSLLCPPPHPPPVTVTAQDLAHFFKDKIDLIRQSIPFDDNLKLPCYSLTSALHSFSPATLDEVSKLLACSNPTTCSLDPIPSHLLHPISDTLSPALTHLFNLSLSTGTFPLSYKQALITPILKKPSLDPSSPANYRPVSLLPFASKLLERLVYNRLVQHLTHNSILDPLQSGFRPTHSTETALTKVTNDLLLAKSKGHYSILILLDLSAAFDTVDHPLLLDILYSVGVRDTALSWFKSYLSDHSFKVAFSNSTSTSLPLSVGVPQGSVLGPLLFSIYTTSLGKLIQSFGLQYHLYADDTQLYLSTPDLSPSVLSQVTDCLSAISSWMSQRHLKLNLSKTEFIIFPPTSSPVPQVSLTVNNITFQSSTQARCLGIILDSQLSFTPHIQSLAKSCHFHLRNIARIRPYLSLDTTKTLIQSLIISRLDYCNLLLTGIPTHRLSQLQSVLNAAARLIHLSHRSTSVAPLCISLHWLPISSRIKFKLLTLTYKALTNEAPPYISALIPKYTPSRNLRSASDLRLSSPLITSSHSRLQDFSRASACLWNSLPRPIRLSPSFQTFKRSLKTHLFREAYSMYLN
>L2-7_NVi_gag#LINE/L2 457-1492 via tfasty with L2-6_NVi_gag, 1 frameshift. [Nasonia vitripennis]
MVKCRKCSRNVATVSKSCTTCGSTFHPRCHVTFLIGKPSDTCCKALVTLAADTQVEPTLTVQNHPSSIAALTSDSPSPLSFAATSEAGKKLRRKASPPSPSELLASKQTRREFSSSSESSNDSHNMPDSAADEAPAWFKAYLTEYRNDKAEVNQRLNNLETGMRKTVSSVVRNIALVDSCEITISGLPPDTSIQPRELARKVFAAIELEWLLNFVIRFRDWPQKAQANEASTSSRTEPGSRTIVVKLMSAPLRDSALENASLLDKTSAQALFGSGGARKIYINPLYPKPVYLLRKKAMRVAKQLNYARPVVQNLVVCMRQTKESPLIPIVSEEELAALEPYRPQQ
>L2-7_NVi_pol#LINE/L2 1538-4393 via tfasty with L2-6_NVi_pol, 4 frameshifts. [Nasonia vitripennis]
RPASGPNSSGPLDSINIGHINVNRLASHFALFEEHCTTSHFDVIGVTETFLSVADPDDQLTLSGFNFFRVDREGQAGGGVAFYARDFFKVKILAHSGGNIPEFVIAELIYNNFKLLFAVVYRRPNSAHPSHFFQCLAPLLPHYLNAVVTGDFNADMCTLNANSNNLRSSLESLSLYLVPSEPTHHVFRYDRPPSHTWLDLFIVNCRDSVVALRKSDSPFIAGHDFIELTIRAAKPPACEKVIMCRNLKKVDPAVISAALCDILAPLANPFQHGQNRFLTASPTLPVTLGPCPADTDVFQRHITSALISTYDAVAPLRRITLSSRRKPWVSPAIKALMKRRDAAHGLARSSGIHSDFERFRALRSEVSNLLDTAKNEYLAGRLVSAPDSNSKWRELRSMYITSPRLPSPLLYFDADVLNRHYAAIVNRHPPLSEEVFQVLFDSPLAEPAADRVFDLRPVTLAEVRDSVLNASSKASGVDGISVPMIKAALPGVLDHLTDLVNACILNGTFPTDWKKALIVPLAKSKTLTSPSDTRPIAQLPELSKVLERLVHSQLTSYLEAHRLLDPRQAGFRAGHSTQTALLGVLDDIRRGIDDRKLTILILFDFSKAFDSIPHAKLLAKLKAMGSESDSLRFFFNYLADRFQAVIDKGGTASDWLRASSGVPQGSVLGPLLFAVYINDLPRVLQFSRHMIFADDTQIYHQCYPNELPSALAAVQANLNKCKAMILGSQFYVSRVDLPTLPKITVGGVRLDYVSEACNLGVWLTPSLDWQLHTTKVLRKIYGALYRPKDIRKDLVESLVFPCFDYACAVYHDVDVTRNQKLQRAQNACTRFVFGISRSAPMLHYRLELGWLSVMRRREFLLGSLAYNVLAFENPIYLASGFKRITLDLSVRRSERNPPQALLYSAPRTEALKQSFAITASSLLNSLHQAEFSPDKIGAFKRSMRAALLERDRRDWADRVTNKGLTI
>L2-8_NVi_gag#LINE/L2 1292-2590 [Nasonia vitripennis]
MGALRYCTLPSSMLTLFSNQFELIERSVDDLKTLLVRRLDAISQRSDPAPAALEMIDRLVERVSSLEEKIEKQVSKLEDLQNDRLLLSQENKALRESLDDAMRVMHRVETRINADDGGSCTSRNLSRNLSLSLSNSSNKISNDNDGDSSSADICIAEASRVFVSLRDCESVDASGGAGASTSADTDGFRVSKGRRHTRARKRRGEGREHSAGVRSSPTDGMSSGESTAEIIISSISDCSEQERGDVAHAVLATVLPSVARDDIVSARLLRPNTRVATVGGRPSPWVVRLSSHLIVKNIMRAKHKITGLNTRHINVSHLSQETSNSLVQSKIFINELLSKESFLQFKSLKSVASGLGFKYVWHRGGRFLAKMRDGEMSHHFQTAXDLQAIAASYSCTTSNDNLVNNVTAVHNGNAITGTAPCTGSLDKDSKKN
>L2-8_NVi_pol#LINE/L2 2591-5530 [Nasonia vitripennis]
LGGVKVRGAECDGLRAGFINATSLNRHMEMFRQFLATARPFYHLFGVAESRFGPSVDDVFAQVKGYSVLRQDRNTQGGGVALYIHNSYKATILCSSPTTTDGRKPGIPEYLMCXIQKGRMPPIFVAVIYRPPGISFTTNSDLVDKLKLYAEDYNHRIIMGDLNANMLSTSXDANFVKDLACELNLKLVEHGATHHVGESHTWIDVIYTDDNEVVLNANNMMATFPSRHNIIDFTIRTPKSESPTLTPFFYRDFKSIRCEELLSLLEACDWSTISCPGMTTDSKLEALSGNIMTVIEKLAPLKKFKPKNKKSSPWVNAELQDLYDKRDAVERRFKRTRDSRFWSEFQSLAAQAEQRTIEAREAFIQARISEALNNNKNIWIELRNLGLLSTTKEELHGFSPGELNAHFAGVSVSESESEVNLDEIVATASEAGFTFREITFSDVVLAVAHFSSQAKGEDGIPQDVIAKSLPVLGHHLASIFNSSLSSGVFPGAWKKACLVPLKKTAIPSAASDFRPIALLCFLAKVLEKIVHDQISEYLESEKLLDTRQTGFRRYHSTQTALLSLSEDIRAGINSKKQLLTILLMFDFSKAFDTISPSKLLRKLIGMGFSRSVVLWIKSYITGRNHQVVTKTVGNSDWLTTNLGVPQGSVLGPLLFSLYINDLRDILASFKGPKGELSDSVEHLLYADDLQTYTQVARDDLSGGVDRLSAVARAVAVWASENALRLNVGKTKAIIFGSDSNINKVQSLKLPGIEIEDGVFVPFADTVTNLGVVMDSKMTWKPQVDAISRKVNRVLYGLRSFRSCTTEELRKQLAGALATPHLDYCSLVYLDVSGQQSTRLQRLQNSCVRYICGARRDEHISPYRRKIGWVPVKARRELFAAVMLYKAXVMGQPPYLAALFDRNQSRTSARDPQELVVPSARTDAGLYSFKAQGARLWNSLPRDVRDLPSLKSFKAVMRRRIYVREIECTVDQNTDSATVS
>L2-9_NVi_gag#LINE/L2 151-1572 [Nasonia vitripennis]
MNLSTPKVRLPRNSGTNSTKSNNLAVTTPAPKPAASEGKSTPEEVEEAISTKQSTTPDAGHHCALPSSMLNLFSSQFELLERAVEDLRSLISRKFDAVAGATVGAPASSGHQEDFTARIASLEGKIDAQSTKLDGLHNDRMLLLQENTVLKEQLNGLVRKIEGMADSVASKCRAHDVSHSDSDADDSRIMISLRDIDVSASCMRDAGSPVIDVANDFKQIRAAARSRVGGRRRRDAGAQFVSRAVDGESGSVSGDCGSDSRGIESESGGAGSSQTTKHKRLSPLSSNTSELGGMRGSENEADLIISNVSDGTDAQRLNVAHAVLAAIIPSISRDDVVSLRMLRREVDDGHGSRQRRSPWVVRLSRRDIANSIMRAKSSFVAFSTKDINVSLLNEETRNSLISSKIFINELLSNDNFIKFNNLKRIARGLNFKYIWHRGGRFLIKRGDGDRTHEFTSAADLHALAASYNNNNTC
>L2-9_NVi_pol#LINE/L2 1787-4551 via tfasty with L2-4_NVi_pol, 3 frameshifts. [Nasonia vitripennis]
MGMFRQCLANARPSYHLFGVAETRFGSEVDDVFAQVDGYSVLRQDRNKRGGGVALFISNVFKATILCSSQSEVEGKPGIPEYLMCGVQQGNKPPIFVAVIYRPPGVSFSDNSELANNLRRYSAGYDYRLVMGDLNANMLSTSHDAEFVRDLACELNLKLVNHGATHHVRDSHTWIDMIFTDDDNVVLSASNSPANFRSSHTIIDVEIYFQTTEPPALNSLTYRDFKSIKSDELLSLLAACDWSSVSCSDSGVDTRLEHLSQKLLTVIDQLAPLKEFKPRQKDYPPWVDAELRHLYSRRDALKRRHKHARRGSRRRDDLWTEYQALAAEAERCTNQAREEFIQNRIFDALENNKNVWNELRSLGLISKAKEDLHGFTTDELNTHFAGVSISDAEREVDLSGILAEANEDGFTFREVTFADVVLAVAHFSSQAKGEDGIPQSVIAKSLPVLGHLLVTLFNASLSCGVFPGAWKNAHLVPLKKKPIPSTVSDFRPIALLSFLSKVLEKIVHEQISEFLASKNILDPFQTGFRHNHSTQTALLKLTEDIRTGIDSDKQLLTILLLGFSRSVVLWVMSYLSGRNQRVVTKLNGESSWLTTNLGVPQGSILGPLLFSIYINDLQEVLAGFRGPKGLLTDSVAHLLYADDLQTYTQVTRDNLREGVDRMSAAARAVSDWASHNALHLNTGKTKAIIFGSEYNVNKLQGLNLPGVEVQTGVFVPFVDAVTNLGVVMDSKLTWKPQVDAVSRKVNRALYGLRSFRSCTNEALRKQLAGALVISHLDYCSVVYLDVSGELETRLQRLQNSCVRYICGVGRYEHISPYRRKLGWMNIKERRTVFHGGVNVQGAQHGATAVPFGPLEKNQCRTSGRSSRDITVPGTRTDTGLKSYRVQGARLWNSLPRGMRTLPSLSRFKLAMRNYLLPTLSET
>L2-22_NV_pol#LINE/L2 2-2908  [Nematostella vectensis]
NGRSNLILGLSETFLDESWTDTELAVDGYSLVRADRTYNSGGGLLVFIPSHISFKRRVDLEFEGIEAIWLELLFPRSSPCFVCFIYRPPSSTSAYIALLDEMFSHASSAISQQVVVLGDLNFDLLERPLPAPTKQYLSIFDSLGYQQLITKSTRPISNSLLDHIFVSSSDFVIEADTVSNTASDHLPIFVAWKLRAGYTRPTGHKVLRFRSRKNFCTESFMHDLSLVPWSTLDIYDDVNDALDQWYKLFNDILTVHAPIKEHRIKRPLKPDWFNAEISAAIKARNCLHRIATSLKTDTSWSEYRRARNHVVHLIRKAKKTFYNDAIKNNLENPKNLWKIIRNISPSKHVNLPNRLTVNDTLYEDTFDIANSFNEHFSNISSQVSIDAVPEFPDWSVLTNFINSKHQPGSYFSIPPISEDFVLNSLSRLDIGKAAGLDELNGFFIKSAAPEIFRSLTKILNLSISSCVFPDPWKSAKVSPLFKDGSLFDRTNFRPISVLCILSKVLERHTHTSFYYFLTSQDLLTDFQFGFRWFRSCELATINLSDSILKNMDNGLLSGMLLIDLKKAFDLVDHNTLLLKLGLYGCDELTLKWFKSYLSGRTQKTCFKGVLSNALPINVGVPQGSILGPLFFLLFINDLPLFLSSDFVTDTTMFADDTTFLISGPSVPDVELKLNKLAADVHKWATLNRMVLNTKKTKSMLIGSHQKISNLAESSLSVTLNSCPIEQVNSARVLGVVFDNHLTWEPHVEHLCKKINSRISLLRRIAPFLTPAGAIHYYNACIHSQFLYCASVWGNCSQTLQLLLLRSQKRAARTILSADFSVPSVSLFSRLNWLPICDLIKQRKLLTLFSILINPDSPLCLRSKFSFVSHERRTRSSTSHNLVLPQPRTDAGKRTFSFSAVSLFNLLPPSLKQLADSRILNPNQLXNVTSLAKKKVRDIFHSHLNSVSHLEQLFCHTCRFYIDCRCYFS
>L2-24_NV_pol#LINE/L2 2-3270 via tfasty with CR1-42_HM_pol, 1 frameshift. Basically complete. [Nematostella vectensis]
DECEKPVIKNHKRCICTTCVAFTHAKCSRIFDVKLIKAATPKEWTCPRCLLSELPFHVVPQLDSSDMTEIAADGSFDAPCCADVTPTVNNSLTSELANLPPYVLPDLIEENKHLETLRKCNTKDILLCHININSIQNKFEELSRLIKKLNVHIMFVSVTKIDSSYTNNCFALPGYSIHRDDRKKGGGGVIAIVSACLTYKLLNITKKYKTIEPIAIQTKIKSETVTMLCPYRPPKPLTGNYQILLENELSDICNWASLQSNNVILVGDLNLNRLRPDKPEGKLLPDLETEQGFLCTITKPTRIEMRANKLTLSLIDVLLVNKPETIKHSGNYYPSLSDHALVYGILNDRVNPNKPKVISFRSYKFFDCDDFKMQLNVAPWHVGDIFDDVDDKVYFWSSLFQSITEEAAPMERMKVRDKDVPFMTSEWKQAIRAKRKATSKFLKNKTPENWENKRAARNEATRQRRIAIKHYWRKQCEHLKEKPREFFKTFKPFLSSKNTTRDNEIHLNDVDGTLVKDQSRVAEILVDYFSTIADGIGGDKAKLSSPDDFMDHPSTIRILDVCSNTTPCRELRPVTEGQVLKELHSLKPGKAAGCDAIPPKLLKIGETELAKPLTSLFNSCIKSKVWPGSWKLGDWTPVFKKDEKYSKENYRPMTVLPCVDKVFEKLICSQVAEGFERHFFTNSSAYRKSHSCETTLINLIEGWKKARDNKLSVSILSTDMSKAFDSLHPPLLLSKLKAYGFQENLIALLGSYLSERNNRVRLGRHVSSYKNINRGCPQGSALGPLLWNIFQNDLCYHIDGSLSMYADDHQIYHTGSDLSTVISDLRVSADHASQWYDSNLLAGNLKKYQVLHLTGNRRKNADANAALYVHGEIINDTNELKLLGVTIDDQLNFSTHINEICKRASQRAGVLMRLRNLIPTNAKLQLFKSAVLPHLTYCHLVWHFCRSSDKRKLERVQERGLRAVFKDKSSSYANLLERAKLPTLLNRRLQDIAILMYKVHNNLCPPNICGIFNRHSANYNLRQADFSLPRYNTTTYGKHSLRYLGPKLWGKLSVTIRSSPSLNTFKRKIREIDISLLIDDGTKCCSLCKN
>L2B-1B_CQ_pol#LINE/L2 2-1171 Fragment  [Culex quinquefasciatus]
CESALNLLLLKWKQCIEKGNIVLSVFVDLKRAFETIDRTKLIRVLKKSGIRGTVLKWFSSYLENRKQVTRYNDAVSAETAVDLGVPQGSVLGPLLFILYINDIKQALKRVQVNLFADDTVLFVVGDSFDECFDIMNEELGGFSEWLKWKKLQLNITKTKCMLVTTRQTKDCRRSVQMDGGIVERVETMKYLGVMLDEKLNFNEHIDYTIRKAARKFGVLCRINRYLTAETKVQLYNSLIAPHFDYCSSILFLATQRQMKRMQVLQSKIMRLILRCDRLTPRRSMLECLQWMSVKQRIEYNTLVFVFRVKERMAPQYLTEAMVRGRDIHEHDTRGADDLRLQIWRKACTQNSLFYKGFKLYNQLPEAAKMTSNINEFKRSCKEFVRQRPLE
>L2B-1_AG_gag#LINE/L2 364-1710 [Anopheles gambiae]
MSCKKCIRPVLISDDPVTCMGICHGQFHRACTRLTKPAAKMINDIVNVKYWCDDCLEXEGSGASKSDEMLEIKAILENIKLSIVAIXEKIKTSVCEVVSIGITNMQKSSIDAIETKLASSVSDAVNTGISSIEKKLNAKVACNMPQKNLVEKSDATSLILQDTEHTDSIGTTEWTTLTRKRKRTNSGRMETPRNTKLPNVSKIDNQVKNNTGTLIIIPKIDQTCDKTRSDMRANLDPRIHKITNFRNGKPGQIIVEWASQEGIDHIRKEIQTSLGEKYLTSLPTRKFRIIGLSENYKEDEMVDLIKTQNNGFSTAYIKILGKFEKADYKYKKYNVIIEVDHDTAIYLDREEKINIGXDRVYIHESFHIMRCFKCGQFGHKSTTCDNEETCSKCSGKHKTSDCKSSSESCINCSTQNMQRGLKLNTAHSAFSKECPTFKWLKSRKQQLSK
>L2B-1_AG_pol#LINE/L2 1714-4515 [Anopheles gambiae]
QLQNKQSKNIQMLYMNVAGLSSSHIMLNHIVQTIQPWLVFITETHIVEAEAFEQFGIPGFTAISCLSNSRHTGGVTIFIKESITYKILINEARDGNWFLSISATISKKSFIFSLVYHSPSSSNAHFVNLLEWWFDKFLDLGEDNILIGDFNINWLNSAESKPLRQLMESLNMNQIITEETRITQRSKSLIDHVYCNHNSFIAKTDPTLKIADHETIVLTLQKCNVSLNNKKTFKSWKRYSKDKICSSVNVNLPITNLCLHDKAHRLEQVIKNSIAQLIDVAVVNNNNYQKWYTGDLQCKKQRLDKRYFTFLKTNSELDWLSYKTSRNCYLRELRMTKRNYFERKINESKNDSKQLWKLLKSWLQTGSNETGRVQFNDKIIEDESEIARLFNEHFVNSVMDIHKSIPQCNEPEQIKNMEQTRKRFHFQPIDIQTLQRICFKLKGASGLDDINGKVIRDCLSVTGDTLLNIINDSLITGQFPNTWKESIVIPIPKINGTIIAEEFRPINMLNTLEKILELVVKEQLVQYLKENKLLVPEQSGYRESHSCETALNLVLEKWKTNLNKKHITLAVFLDLKRAFETISRPLLINALKNFGIVGQELDWFKNYLEGRTQRTRFKTTTSESLENSLGVPQGSVLGPILFIMYINDMKNVLKFCDINLFADDTVVFLSCSSVKEATTKLNEDLASLDQWLKYKKLKLNAKKTKMLVLSRTKTLFNLQINIDDEAIERVKEIKYLGVTIDEELKFKSHIDNIIKKMAKKCGIICRLKKDLSVFAKIQLYKSLMAPHLDFCPSILFMANAGQTTRMQKLQNRAMRAILGCGWYTSSLIMLDTLKWMSVKQRVMYQTMIFVYKLLNSHLPQYLCDRVVRGLNVHDYNTRRAADPRVPKVETVSAMNSLFFKGIQTFNMMPRVVCNAETIPQFKRLCATHIKATIV
>L2B-1_CP_gag#LINE/L2 260-1600 [Culex pipiens]
MSEEMDTGGRNEGETTVLAHPCGQCAAPIANGDEKVDCFGKCRLSMHTRCLPRATAVGIKMLSQMPNAVFVCDACLASHKFDDGNTEKILQVIDAKFNNLAGVIDFVKNFDSAVKKIVREELVRANGKKTVVAEKTEESRKIFTRSAAKAAASANKRKAEEEVEETGASFSTPKTSFAEVVRKRVKISEEEVKKKQSKKPDPVVVIRPKEGVQVEDVRAEVQKKVNAKDLNVHRVTSSRSGAVIVSLKDEASVAVLQANVEKQLGGRFEAQLRESFKPSIKIIGMSDEMDEDELRDSLVEQNDVFANLKHFKLRKTFHIEKWRFNNIGVFVELDAETFFKVLDLGKVNCGWNRCRVFDGLQVTRCFKCNGYGHKGADCRSEKQICPICSEDHKWEECKATAEKCVNCEKLRVQRKVNVDANHSAWSSDCPVFQKEQEKRNRLVDFTT
>L2B-1_CP_pol#LINE/L2 1604-4405 [Culex pipiens]
QPKPDGDILYLNIAGMKSHFDELKLIIQKTTPKIIVLTETHLTEKHDLDEFQIQTYSCSFCLSRSAHTGGVAVYVDDRLKYETISNMAVGENWFLAVDVKSSALNGIYGGIYHSPSSSDTEFIDSYEEWLRSVFADERRNVFVGDFNIRWNEPGCSRELKNVADAMGMRQIVLEPTRVGPTSSNIIDLVFTNMENAEARVVEELKVSDHETISIAIGNDTINLPEREESYVSWKRYSKDKLQEILRRNRSNNSRIDETIGEASRNFSTNLVSAVESLVDVRCCRRTETSDWYTDHLRAMKNERDNAYRQYRCTKSVPALERYKLLRNAYVRGLKQAKNQSVEEEIRSCHGDSKKLWRCLKSLIQPGGKQHAEIVFGTGCSDAETARRLNNFFVDSVEEIHAKIPPPSVVPVAVQEEPEESLYEFQQVTMAKLKDTVRSLKDCAGVDNVTKRVMLDALDVVGGELLDIVNRSLSQGEFPQHWKQTLVIPIPKVPKSTRPEDHRPINMLPLYEKVIETIVKEQLTAFVDRVGVIVEEQSGFRRHHSCESALNLLLVKWKQYVEEGKIILAVFVDLKRAFETIDRSKLKAVLHRCGIRGTALRWLSSYLSSRVQVTRYNSATSPATDVNLGVPQGSVLGPLLFILYMNDLKQALRQAQVNLFADDTVLFVVGDSLDECFDVMNAELAGFVDWLRWKKLQLNVSKTKSMIVTTRRLNDISKSVMVDGEAVERVEAIKYLGVMLDEKLNFNEHINYTIRKAARKYGVMCRISRYLTSEAKIHVYNSLIAPHFDYCASILFLATRTQLKRMQVLQSRVMRLILKCDRLTSRQLMLECLQWMSVRQRIEYNTLVFVFRIRKGMAPKYLTDTVVHGSDIHQYNTRQADDLRLLQCKKTCTQNSLLYKGYNLFNQLPDEAKLTSNINEFKRHCKTFVLRRPLE
>L2B-1_CQ_gag#LINE/L2 267-1607  [Culex quinquefasciatus]
METGEGKGGGTNHPCAQCSQPISETDHCVECFGKCRLSIHVGCVPRATAESIELLGQLPNAVFVCDACYALHDYGDDGHTEKILSDVVAKLDELSCMIDFVKNFDSAVRNVVREEIARDRKTSTASGNKDGTRNRVITRSESKKRKAEEAEDSESKKMRAEEVGDTVTEFVTPKASFAKVVQQRIVLSEEEQKQKQTQKPDPVVVIKPKEGVEVENARMEVQKKVSSKNLNVQRVYTNKNGEVVVALKDEASVQVLQENVKKQLGERYDVRLRDSLKPTVKIIGMPEELEEDELRETLIDHNDSFANLKHFKLCRSYRNEKWSYDNNNAVVELDADTYFKVLDAGKVNCGWKRCRVFDGLQVLRCFKCNGFNHKGADCKAAVVTCPICSGPHELKDCKAEREKCSNCEKLRSEKNADVDVNHAAWSSECPVYRKQQQRRNKLVDFTL
>L2B-1_CQ_pol#LINE/L2 1611-4412  [Culex quinquefasciatus]
QPKPVGDVLYMNIAGMRTHFDELKVIIQQNKPKLVILTETHLTSQHDLDEYEIQNYRRSVCLSRSAHTGGVLIYVDDRVDFETISDFVAGDNWFLAIDVKSPTLNGIYGGVYHSPSSSDTSFIGSLETWLRSVFVEDRTNIFAGDFNIRWNEPGYSRELRNVTEALGMKQLVSEPTRVGPSSSTMIDLVFTNMVGGDARVVEELKISDHETIGINPGKSSVHLSERSKTRISWRRYSKEKLQEILLSNRSRADPMASVNEAGEKFDAEIVAAVGSLVDVRFDERSDPHDWYGDQLSTLKTLRDDAYRKFKSTKLVSDWDRYKRCRNRYVNQIRTSKNSSINNEIRSCGGDSKKLWRCLKSLIQPGGQPPTEIVFGGPRGDAETATLLNEFFVQSVEEIHGKIPPTAFTPPTTGGTEHKELLSNFEPITMNKLKETVRSLKNCAGVEHVTKRVMMDALDVVAVELLDIVNKSLSRGEFPDAWKRTLVIPIPKIPKSKNPEDHRPINMLPLYEKVMEIIVKEQLLAFIDRTGVLLKEQSGFRKNHSCESALNLLLLKWKQCIEEGRVVLSVFVDLKRAFETIDRTKLIGVLKKSGIRGTVLKWFSSYLENRTQVTRYNSAVSSETAVKLGVPQGSVLGPLLFILYINDIKQALRRVQVNLFADDTVLFVIGDSFDECFDIMNEELVGFTEWLKWKKLQLNIAKTKCMVVTTRKTNDCRRCVQMDGGVVERVETMKYLGVMLDEKLNFNEHIDYTIRKAARKFGVLCRINRYLTAETKVQVYNSLIAPHFDYCSSILFLGTQRQLKRMQVLQSKIMRLILKCDRLTPRRSMLECLQWMSVKQRIEYNTLVFVYRMKKRMAPQYLTEAMVCGRDIHEHDTRGADDLRLQNWKKACTQNSLFYKGFKLYNQLPENAKATSNINEFKRNCKEFVRTRPLE
>L2B-1_HM_gag#LINE/L2 126-1334  [Hydra magnipapillata]
MTKTKKHLSPHNADKLDEDSDHSISNLKTSVFNCIECEISIHGKSVECGVCKEWCHLKCSKLTNDDFNAITKLKKSRVIWFCFKCEKKLVKMNKNDKKVKYTFIKELYTDNKILNKEITELKIENELIKKELQDKIKIKQIPIISSNVNSISERTFSEIVVKKINNHDKINTKKLIMDNIKPKELGVEIQHIRNQNNEVIIRCNDEKSKDKLYQEIKGKLGVNVSVEKGNTEKMKRIEFKITKHDEVFNEILANDIIALNNLNNKAKVIVVKRINMTKNKYELVIADIDINTYEYIINKKNGRLAIGWESVQIRKHINIIQCYHCQGYNHIAKNCHFNTPSCCYCSGDHYSKDCQNHESNWCVNCLSKNKKFNLMINPQHCAFDKKCPVYNDIKNRVELKYDN
>L2B-1_HM_pol#LINE/L2 1338-4280  [Hydra magnipapillata]
QSIVVKDIKIAYTNINGLINKLDRVTLYVQKFKPHILGLTETHITSLIFEKELEIFGYSFINLESSSAHTGGCILYYKNGIKVNSDPKSIVKDKCHWLLSTELVINKIKFHFSVLYKSLQENKTIFLEFFDTWITTIRSKNIIILGDFNINTLSNDKHSIALKQSIKNNQMYIFNSTPTKISEKSSTCIDLAISNCTLIETNEKEKLSDHEMITCKYSIKEKRQFKTKKAKNIVVNSSKQNFHKIDYSLLNKNISVELKNIKKEIDIEVMANSYTTIIKNNINMQEKFYKTNKEINNNNPSILNNWLRNSKYTDIVKEYNQEWKTFVWFKYHGFSESKCKIQYNKFKKIRNKKTSLLRKLKADYYKIKIDSVKNDPKAMWNSLKYLTSVKPVIKSNIMDDIKFDEENVIRSFQRDDTKKSIPDKYNEFLIQSIIDIETSIQSDMSYNAMENLSLNDNIPCFCEFTPLTMQDLNDIVNQLQNKNSMCEGLNVIIFKELYSSFSSILLKIINLSLKNGKVPSKWKKSTIIPIPKLMSPKLPQDLRPINMLPTYEKILEIAVHKQLSSYFESNNIFYNNQFGFRKNRSTESAIQLLLSKWRTSLNNNKFVVTVMLDLKRAFETVNRKILIQKLQGYKIKGTVLNWIADYLSMRTQVVKIKGEESGELVCDIGVPQGSVLGPLLFIIYMNDIASKIEYSFVNLFADDTLVCIEGTNLEETFFKLNQDLKILCKWLSNNKLKLNTLKSMAMLIVNSKKRKNSLINHNNNIKVILDDVVIEFSDSVKYLGIIIDYQLNFTEHIKYISNKIAKKTGYLGRISKYLTYWTKKIIFQTIIAPHYEYCASIFLDVNTNNLNILEKLQNKAMRIILKCHWLTHKTEMLNLLGWISVKNRIIFKSLCFIHNVTSTVNDIFKPFYSKNSELHQHYTRQASYFHKSSQCNRAGQKLLFVFGLKLYQEIAGGFVQLDYKKFKKKLLQTLKNNQLIQ
>L2B-2_CQ_gag#LINE/L2 322-1718 via tfasty with CR1-1_AG_gag, 1 frameshift and 1 stopcodon. [Culex quinquefasciatus]
MSLCGKCEQKICFEDAVPCSGKCGAFFHRSCTTLTKAAAKMINEQPNVQFKCDPCLDSGVDAEIAVLLADVKGIKEELKKYSDISDSIPGINESIATRIDEAIKKGIEDVMKACSEIFQKKIKTVVESSVATQIEKAIKSNSQKCKNERIVKVTRKRGTHSESDGLPGSKRRAVDTDDLEPMVVDDEEKDNVFETPTFAEILKGETPEIKNGLQNKKLRVHRPKIVIKPNETNQSNDQTRTFLKSNLDPKLHKINNLKNGRDGSIIAQCAPGQNLSKVKSDIENRLGxNYTAIVSTGLPKLKIVGMSEKYAPEDFVELLTTQNDEIFIEHVKVISSYENPRMKYNKFSAIIEVNNDTFDALITAGKVNIGFDRCSVFEAIKVLRCFKCGEFGHMSTTCTNSETCSKCSESHKTSECTSTVMKCVNCLKKNKEQKMNLDVNHAAFSSKCPVFRHLAAIKKDRMYENE
>L2B-2_CQ_pol#LINE/L2 1722-4466  [Culex quinquefasciatus]
QSNAGRKVNATDIIYLNIAGLTTNYVALRQLVESSQPLLVLLSETHITQPEAFDQYSIPGYKVVFCLSHSRHTGGVAIYFKESIHLKVCLNEFSENNWFLGITVEKGMKTGNYGVLYHSPSSSDQRFIQILENWLENFVDMSKFNLITGDFNINWLDEQNSAHLKSLTEYLGLTQKVTAFTRISRNSRTLIDCVFSNIDCVKAVVKSDWKITDHETLVITISEFNLESSDDRIKIKSWKNYTPSAFCDLLERHVNFRTLTGELDFKSRILTNTLKNCTSELVTTEYINRKDSNSWYNGELMRLKQKRDKLYKKFCRTNNPRHWNKYTVARNKYTKSLKTTRSTHIQNNIERNKNNSKELWKILKKLMKSKDSLPRTILFGDIEECSDDVIASKFNNYFIESVVEINESIERTDEPVEIRNMMNRNCRLEIFNPITYVQLKKICFDLGNSAGIDNVNAKVLKDCFHVIGHTLLEIINESLLSGQVPTVWKESLVIPIQKVAGTKKAEEFRPINMLHTLEKILETVVKSQLLEYLNINKLLIPEQSGYREGHSCETALNLVLAKWKEFFENRNSTLAVFLDLKRAFETISRPLLLQTLQHFGIGGAAFNWFKNYLNFRTQRTIFNEAISESRENNLGVPQGSVLGPILFIMYINDMKLVLKHCDINLFADDTVIFVAAKNPIDAVLHLNEDLDALSKWLKFKQLKLNINKTKYMIISSRHQNIQDVQISIDGEQIDRVNSIKYLGVTIDENLKFNIHIDNTIKKIAKKYGIMCRLRNDLNFQSKIQLYKSIISPHLDFCSSILFLANETQLSRLQRLQNKIMRLILKCNRFTSSTWMLDALQWLSVKQRIIFSTMIFVFKLINGLLPRYLCDRILRGSDLHDHFTRNADEPRTPNFLFGAAQNSLFYKGVNIFNSMP
>L2B-3_AAe_gag#LINE/L2 297-1682  [Aedes aegypti]
MSVQCDVCCKAISAAKERVFCFGGCGQVLHAKCADLTSAGETALRENLSIKYMCHDCRKKQVSLNDMVGKCDSILNAINEIKNRLEKIEAKLERNGCDEAVKQCEQNVKMVVEESAKLHGEQLKILESQIAISANSPAIGKGQAEGDEYPSGGSFVEVVRRKKNKRDTGSVLRSGRVRNRSVATPDKNENTSRSAKAQPISNANVKEVELSVSNKKFGCKVRVKPIATQSNHQTKKDVRNIINPTQMGIKSVRNGVNGSIIVECGNEDEAEGFVKMINEKLSNGYSVDIEQPKRPRIKILGAXGNYDSNELIDIFRDQNDIEDVEFLKVLKCIPTKNNPENKCSLICEVDANTFERVVRKGKLNIDFERCRVLESIDIFRCFKCCGYGHKSGECKNNLHCAKCADRHDVKDCSSDKEFCVNCINSNRERKTQFDVNHSAWSVDCPIYLKKVTISKSFINYNA
>L2B-3_AAe_pol#LINE/L2 1686-4487  [Aedes aegypti]
QSRRATDVVLLNIAGITSHFNELEIIVSRQKPKIVMLTETHLTSDIGISEYAIKNYHMICCHSASRHTGGVVMYIHEQVKFHVVDNSTCGSNWFIAIKVVKGLKVGVYGVLYHSPSANQQEFLLHLEQIWLERVIDDKVINLIGGDFNINWKNVSDKRKLQNLMQCFNLNQKVNDITRRTIRSQTIIDLVFCNDDELNVTINQGNKISDHETIQIQFNECSEPVEDYITFKCWKKYSKAALISLLRRSMSDNSERELDEKADILSTLLKENINKLVVIKSIKCNSRKKWYTIELKSLQLARDDAYRKASTSWDEADWRQYKVLRNEYAYSIRKAKAEFTQRKIEQNRGNSKQLWKTLKSLWKSREKPPIRLTFDGEVVENDHEICERFNSYFVDSIQQINSSIEDVPNCFEDESDHFAETWNVFHRISYDVLCRSIHKIGSSSGIDNVNLQVLKDSLEVTGEYLLGIINESLEQGNFPRSWKQSTVVPIPKVSGTTKAEEHRPINMLPIYEKVLEIIVKDQLLEYLNEQKILISEQSGFRQNHSCESALNLLLYKWKRMIEEKKTIIVLFLDLKRAFETISRPEMLKVLKKYGIGGQVLKWFESYLSSRTQICQYRNSTSVPKSVPFGVPQGSVLGPILFILYINDMKKAIKHCDINLFADDTVVFIAEKNEKTAIRKMRDDVELLSKWLKIKKLKLNVEKTKCMIISNKKQLNYTELKMDIEGIEVERVNVFKYLGVYIDDKLKFKEHIDNVIKKVARKYGMLVRLGSQLTFWSKIFLYKTLVAPHIDYCSSVLFLASDTHLSRLQRLQNKFMRYILNCSKYTPILGMLEALQWLSVKERIVFNVLTIIFKLTNNQMPEYLTNIIERGRNIHTHQTRRNYDLRVVPFTMTSTQKSIYYRGIRIFNELPNEIKHAQSIAEFKRKCSNWIKNRYR
>L2B-3_CQ_gag#LINE/L2 2-895 Fragment [Culex quinquefasciatus]
AAGKRKAEDRAEDVEETGIGFVTPKTSFAEALRKRVKVTEEEVKKKQARKPDPVVVIKPKEGVQVEDARAEVQKKISAKNLNVQRVTSSKNGSVIVELKDEASVGVLKASVDAQLGGRFEARLRESMKPSIKIIGMSDEFSEEELRASLVEQNDVFANLKHFKLRKTFQIEKWRFNNHAAFVELDAETFFKVLEQGKVNCGWNRCRVFDGLQVTRCYKCNGYGHKGADCKAETLVCPICSEDHEWKDCNAETEKCANCEKLRVQRKLNIDVNHSAWSSECPVFIKEQEKRNKMVDFTI
>L2B-3_CQ_pol#LINE/L2 899-3718  [Culex quinquefasciatus]
QPKQCGEILYLNIAGIKSHLDELKLMMQNTKPKIVFLTETHLTEKHDLDEFEIQNYRCSCCLSRSAHTGGVMVYVDDRLEYEIVSNTVAGDNWFLAIDVKSTTLNGIYGGIYHSPSSSDAGFIDSFESWLRTVFQDCRTNLLVGDFNIRWNEPGYARELKNVTEALGMKQIVSEPTRVGPSSSTIIDLVFTNLEGVEARVTEELKITDHETICIHVGETTINLPEQKKSYVSWKRYTKERLQAALRAKLRRADAGVTVGEAAQTFGSTLATAVAELTDLCSNDRKVSNAWYGEQLRNLKTERDDAYRTFKHTKRLDDWNLYKVLRNRYVRGLRSSKNLAVEEEIRSCHGNPKKLWRSLKSLIRPGGEPPMEIVFEGARSERETAERLNQFFVKSVETIHRNIPPAQVEPAVVPAEVRVNEDGSEDLLTELQPITLTKLKETVYSLKDCAGVDSVTKRVMTDSFDVVGEQLLAIVNRSLESGEFPQPWKRTLVIPIPKVPKSTRPEDHRPINILPLYEKVLETIVKEQLLAFVDRTKVLLEEQSGFRKHHSCESALNLLLLKWKQAIEEGKIVLSVFVDLKRAFETIDRTKLKAVLRRYGVRGSALKWFSSYLDSRTQVTRYNGSTSAATAVDLGVPQGSVLGPLLFILYINDLKQALRRVQVNLFADDTVLFLTGTSFEECFNVMNTELASFTEWLRWKKLQLNVSKTKCMIVTTRPSDGVSRAVRIDGEEIERVETIKYLGVMLDEKLNFNDHIDYTIRKAARKFGVLCRINRYLTTEAKIDVYKSLIAPHFDYCASILFLATRQQLKRMQVLQSKVMRLILXCDRLTPRQNMLDCLQWMSVRQRIEYNTLIFVFRVTKGMAPKYLTGTVVYGRDIHQHDTRGADNLRLQMCRKACTQNSLFYKGYSMYNQLPEAAKNTRNINEFKNLCKNFVRQRPME
>L2B-4B_AAe_gag#LINE/L2 305-1720  [Aedes aegypti]
MTECKQCGAPVLISEIPTTCTGCLSVYHYKCTPLTKAVAKLVSENENLLFKCSDCLSSQCCGEQNLTLPTVRMFEEEMKKISSISDSFGGVREQIAAQINDALKTGMEELVRSLNSTMDKAIFEMSKSVSKELESMKCSFFEFNSNNNLVAMNDKHGTSSTASEPSLLPRGKKRKVQEDVCAMSDDVFVESISFADVVKSNAGIKIRNKSTKKKSTANDVMQVTRKARPVIVIKPKESNQSSEDTRKILINKLDPKKHKISNLRHGKDGSIIAECATGYNVNVVKDGIQSDLGENYNAVVPSSVPRLLVKGMSDQFSSDEFIRILKDQNEDIAINEVKVIRMYENPHFKYKKYNVVIEVDKETHSCLLTAQQVYVKFDRCRVVPEISVLRCFKCGEFGHMSTNCKNCDACCRCSGSHKTSECTSTVLKCINCIKMNKERKMNLDVNHGAFSYECEVFKNLYQRKKSSLHFNE
>L2B-4B_AAe_pol#LINE/L2 1724-4534  [Aedes aegypti]
QPSSSSNVNQFDILYLNIAGLSTNYVELRQIVEEKRPYLVFLSETHIVDIDAFDQYSIPGYNVAACLSHSRHTGGVAIYVKESVQYRLQLNEVCEGNWFLGIAVDRGMKMGNYGVLYHSPSSSDQRFIEILENWLEMFVDCSKLNVLAGDFNINWCDNSNSNHLKRLADFFNLKQKVNVYTRISRHSQTLIDHVYTNLDSVSVIKNSDLKVTDHETLVINIDDNSRNKSDFVKLKCWKKYSKHAVSSLVERNVDFHTNDGSLDQKSAVLTDVLKTCTNKLVEHKFVSLKNSNSWYNLDLLRCKRNRDKLYKKWRRNNNNTNWNRYKVARNKYSQMVKQTRCEYIQRKIDQHQNNSKELWKILKSLLKPSNCKPRSITFNGTLEESEQVIACKFNEYFVDSVSSINQSIELVDEPDEIKQPINNNCTFECFHPITLEDLRNICFSMGKTAGVDNVNARVIQDCFDVIGHNLLDLINESLQTGHVPQVWKESLVIPIQKVAGTIKAEEFRPINMLHTLEKILELVVKGQLLAYLNSNNLLIPEQSGYREGHSCETALNLVLAKWKENVERKDTIVAVFLDLKRAFETISRPLLLRTIKRFGFSGSAYRWFESYLTDRTQRTAFNDSVSSPVVNSLGVPQGSVLGPVLFIMYINDMRRVLRFCDINLFADDTVIFIAAKNLDDAVAHMNADLRSLSRWLKYKQLKLNISKTKFMLISRNRTNIDVSIQIDDETIDRVREIKYLGVIIDDRLKFDAHIDNVIKKIAKKYGILCRLKNDLTIASKIHLYKSIISPHLEFCASILFLANETQISRMQRLQNKIMRLILRCNRFTSSSFLLDALQWLSVKQRIVFLTMVFIFKVINGLLPRYLCDRIERGSDVHRYNTRNATELRTPQFLYGASQNSLFFKGINVFNSMPIHIKRAATLSQFKRLCISHVKAAF
>L2B-4_CQ_gag#LINE/L2 278-1603  [Culex quinquefasciatus]
MSTSVQCSVCSAAIKEGNEKIYCFGPCGKIMHPKCCGEINMDGIKAMQTNRGLKYFCHDCRNSQCDYNNVLGICNSILTKVNETEKMMKKEITEQIREYTKTANEANEKGFVLLKDYIMSENKKLEDKLSAKTNTSGRNRKEETSLSGPSGNTRSQSKQKTAKAGETGSVTQNYAEVLINGRKESEIDQNREIPKEKETVIIIKPKEGDQSAKKTKQQLKEKLNRTENHILNVREGRNGTVILGVLDNVESVAKSVQEKCGELFNVTVPKPKKPRLKIVKVAEELNEKELREALIEQNDVSDDIELRLVTSFKNGLDEYCVWTYIIEVDSSSHEFLLELEKVNIGWERCKIVECFGIIRCFKCCCYGHKSNECKSDREVCSICAENHRTNECKSEIECCANCSTMNRMRGLKLSTDHVAFSRECPVYKRQVARKRHQIDYTR
>L2B-4_CQ_pol#LINE/L2 1607-4432  [Culex quinquefasciatus]
QSTKNKNNKQKWSVISLNCGGLSTNFEEFKLLVQTYKPRLVLVTETHITEQLGDEHLGIDGYNHVSCFSDSRHTGGVMIYSQSNIEYNVLCKSQIGRNWFLSIDVTRGMKIGRYATLYHSPNEPHATFLKILEENWLEQFVDLSKFIVVVGDFNIDWSRETSDASNLKQICDSLGLKQNVQDYTRITRLTKTMIDLVFSNCDIGVRTVSEMKISDHETLCWYNVNECTVASKSMKKITCWKNYSKSALVNLLRQNRNLTFNFENIHENAINLISNLKKCVQTLITEKLVSVDKCCKWFSVELLQMKQRRDQAYLKHVTEGGANSWAIYKAFRNEYSSTLRRKRKEYIQKSIEENKNNSKELWKILKKMIKPESAPANTICFDNVNEKNRVEIPRKFNEYFVKSVEEISNSIEEVNAPPELECQFSATNMSFFETITLEKLKSVIWSLESKSGSDNISASVLRDAFEVIGQDLLNVINQSLISGVVPDSWKESVVIPIEKVQGTMNASEFRPINMLPLYEKVLELTVKEQLLNYLNVNKLLAAEQSGYRKNHSCETALNLVISKWKKQLESRKKIFAVFLDLKRAFETISREKLIAVLKQYGITGNVINWFSSYLVNRSQRTKFNSVISVSIETLVGVPQGSVLGPLLFILYINDMKRVLKHCDINLFADDTVLFIASDNAVAAIEKLNFDLENLSRWLKFKKLKLNVSKTKYMIIANNKASLPNLIVSINGERLECVTEIKYLGVIIDDKLDFKKHIDYSIKKIAKKFGVLCRLRNDLTQWSLIYMYKALISPHFDFCPSIIFLANEQQMNRLQKIQNKIMRLILKCNRRTPRQSMLNALQWLSVRQRVTFLTVVLIYKIANGMAPEYLQKILIRGSDIHQHNTRMASEIRAASFLLTSTQNSLFYKGIKLYNTLPRDFKNEKNFAVFKRKTLGFVKENVGI
>L2B-5_CQ#LINE/L2 1-905 via tfasty with CR1-1_AG_gag, 1 frameshift. [Culex quinquefasciatus]
SRKRKLEAENQNGSNGDETPKSIPSFAEVLNSKRAKKDDNVKTVPAERLKVKPNPVVVIQPRKGVDIGEKTAKKELKQKVNPKNLNVNRVIEGKDGAVIVVVKDDESSQKLKESVEKEMGDQFEVNVRDSMKPTVKIINISEEFNEDELKATLIEDNDVFHDLKHFKLRKFYRNEKRSYAQFTALVELDATTFFKVMELEKIFVGWDRCRVFDGLEVPRCFKCCKYNHKIAECKAEVDTCPKCSGNHRGKDCKSTVEKCANCERDRVEGNLDVETDHAVWSTNCPVYQRFIKRLNKRIDYTA
>L2B-5_CQ_pol#LINE/L2 909-3719  [Culex quinquefasciatus]
QPDKPHDVLYLNIAGLPTHFDELQLLIQNQKPKLVILTETHLTASHDLARFAVPCFEMVNCFSKSLHTGGVSMYIDDRLTHEIVSNKTVGANWFLSVDISNSSFNGIFGGVYHSPSSSDRDFVECFESWLQEVVVEDKTNVIAGDFNIRWGQGPYSLELRNATDVAGLKQKITEYTRSHGGSRSIIDLVFSNIDECDASVVEEFKISDHETIGVCVPGALVVSLPDNKKKFVSWKKYSKSRLQALLRSDVTLQTQEVSVDAKAKVYSSSLVKAVSELTEERVVRATRSNAWFGSSLQMLKQQRDDAYKTYKRTSSEECWQRYKILRNLYVKELRNAKNGSVRQEIDRCSGDSKRLWKCLKSLITPGGMKKSSIVFEGDEGGSCSDEMTARKVNKFFVKSVEEIHKSIPAPQLPEVSSLPPQNLFDSFQPITMEKLIEIVASLKKCSGTENITKQVLLDSLGIVGGKLLEIVNVSLQQGVFPKEWKKSTVIPIPKVAKSTKPEDHRPINMLPLYEKVLETVVKEQLLDFINREEILLTEQSGFRKKHSCESALNLLLLKWKQAIENKRTILAVFVDLKRAFETIDRRKLVEVLRRYGIAGNVLKWFSSYLEERTQVTLFNGVLSPEVAVDLGVPQGSVLGPLLFILYMNDIKKALQRSEVNLFADDTVIYVTGSCREECCEILNAELNVFADWLKRKKLKLNVSKTKCMLITNQRRDDTDGTVYIDGEVVERVDVIKYLGVMLDNKLNFDEHINYTIRKAARKLGIMYRLNKYLSFDNKLMIYNTLIAPHFDYCASILFTATQQQQKRMQLLQNKVMRLILGCERLTPRSFMLDCLRWMSVRQRVEYNTLVFIFRLTKGMAPQYLTDTIVYGSDVHQHFTRQAREIRLLNFKMTSTQNSLFYKGYRLFNMLPEATRNSDNLRDFKKFCKSFVRQRPLL
>L2B-6_CQ_pol#LINE/L2 1-2547  [Culex quinquefasciatus]
NWMLAIEIHHQQFNGIFGGVYHSPSSSDRDFLDSFENWLQQVMADDKTNVISGDFNICWNNEGYSRDLKNIADAVGLEQKVLEHTRISVRSRTTIDLVFANVEDCTVKVLADWRITDHETLGINVEGVCKINMPEKKTEYTCWRKYSKERLQNTLLCDETLWRNNLPVDEKAQQFSRALATAVGQLTETRMRRSADTKRWFTPHLQAVKLKRDEAYKIFKTTNXAEHWERYKQFRNEYVRELQKAKNSSVQQEIQSCSGDSKKLWRCLKDLIKPGGTPEKEIIFDDKTEPCSDEETANRLNHYFIKSVKEIHDSIPTVNQPQQDPLPTVRTLDISEFSQFQPISMEKLRKIVAAMKNCAGVENISKRVLEDAMDVVGDKLLDIINSSLNLGVFPQEWKKSVVVPIPKVPNSTRAEDRRPINMLPIYEKVLETVVREQLVEYVDRAGLLIEEQSGFRKQHSCESALNLLMLKWKQSIENNKFILTVFVDLKRAFETIDRRKLLEVLRRNRIKGDVWRWFKSYLEYRTQITRYNNSVSEAEAVELGVPQGSVLGPLLFILYINDLTKALRRACVNLFADDTVIYVAGDKLDECYEIMNNELAVFADWLKWKKLKLNVSKTKYMVVTTRRSESNCTISVDGELVERVNAIKYLGVMLDEKLSFAEHVDYTIRKAARKLGVLCRINRYLSFDNKIMVYKTLIAPHFDYCASILFLATNQQRKRMQIVQSKAMRMILRCDRLTPRILMLDSLQWMSIRQRVEYSTLVFIFKVVNGLAPQYLTKTVQCGRDVHRHFTRQAGDIRLLNFKKSCTQNSLFYRGYNLFNMLPESTRATTNLREFKKLCKPFVRQRPLE
>L2_Ele3_gag#LINE/L2 660-1893 via tfasty with CR1_Ele15_gag, 2 frameshifts. [Aedes aegypti]
MDACKACGSNLVRSDRSVLCSGLCGSVFHPGCVGLNATNFKAWTATIGLLWFCESCRINFNPSVMDREALIIKTMRDLLLRVDSMDLRIGQFGENLKTLNSVLSLTTSARRDSDVSTRVHRFLSGTTVHDHTDFYNSINRLNLDSSLHSNAANNTIVFPEEDQGAMLDDSVSNAPVEPRGVRPKTYASVVSKTTANVTNSASXVTTANIFATTAVTSVSPATTANAISTTTTIANVMPPTTATSATAYINATLNPAKATGAPTDTIPAFPIMRTTLPAGDSHPTSHASVSNGVPQTNCRLKVVSKHRQTRNRESTEEQLKSFYVTPFTIEQTEDDIIEYLRETINTNESIVKCVKLVPRNKNINELSFISFKISVSEDLVSLIGDSFYWPEGVEIREFQSKNEMRSNQMLSM
>L2_Ele3_pol#LINE/L2 1887-4814  [Aedes aegypti]
VDVIHVSDFNANVPLNSNFTLNSVLPHPAQTKEVIYEKNINMHYFNYLQTKTFLEKFSRIFLKIGVHNARSLSNNIDNYRTFLEKSEINILAIVESWLKPSITNKSVELNGYKIVRSDRCNSKKSRGGGVAFYLKSNTKFSILRKSGKDSDVDYLFIKLNLANLVCGVVYKPPDVNISKLDDIFNIVSEISSTEPNILVMGDFNINILNYNSPQTRRLIDQLSSLSLKLIDTWPTCHKSGCQPSVIDLLMGNCTGNICNAYQSSLGGISDHDFICVDYRFKISKSKPEVYWARDYHKINNETFLSDLRDCSFDRLYYCSNVNEKLNSFNEIIFSVLDKHAPLKKKTARDPVSPWIDNHVRRAFKNRSEAYECWKRDKSNRGKWNNFKCLRNLANREIKRKKHEYFTSKLNIDLPAKQLWNNIKRLGLKQVNTKAGGGDVTAASLSTYFISHFVPETFVENPGGIDAQSRFSFRGVTSNEILTEFTLASCDSVGNDLIPLNVLKMSLSVTLPYITDIINCCITTSEFPEIWKVAKVVPIGKTDNPTVESEYRPISILCALSKIFESIVSKQLNEYLVSNKLLSPLQSGYRKSCSTITALIKVENDVREALDKKMITVMALLDFSKAFDTISHHLLCNKLKFRFKMDSLSVNLIYSYLSGRSQYVDFNNTMSDKISVPCGVPQGSILGPLLFSMYINDLPLVLSFCKFHLYADDCQLYISESIXNLNDSVQKINNDIQNILNWCVHNGLILNAKKTQTIIFSNKRMKVINPPKVKVDNDFIEYSDVVKNLGILMDCKLTWNDQVNAVCCKVYKALHSLVALRKCTPQHTRFQLARALIVPLFDYGDILFSLVSNNNFRKLNHAFNTITRYVFNLRKFDHISRYVNLLLGRSFNNHLSLRVCTQTFKILNNPPSYLENFFSYTRSPRTPLLVVPRSASGNLKLSFRHRAISAWNKLPRNCRSARNYSSFKNNIELFYNS
>L2_Mars_pol#LINE/L2 277-3246  [Metatheria]
MMNILTPGHTLHIPVILNSCRSSSKPHSPPPTTRFLIPIPLNPPTPKFXPNXTQPFHCALWNACSIGNKLPFILNLFLSHSFHLLALTETWLPPDDTASLATLSSTGCTFTHSPRLTGRGGGVGILLAPHCHFQVLPLPPSLSNLSSFEVHAIHIYHPIKILVAVVYRPPGHSPSFLNEFGTWLTIFLSSPTPALILGDFNIHIDSPSNTLTTQFLNLLTSHELLLHPTSATHKDGHTLDLAITHKCTTSMFKNSEIPLSDHNLLAFHLSLCLPLQNPTLHPHHDLQSLDPSILSQAISPALATLSSSPHLDPLVNQFNSTLSSSLESLAPLSYHRLCPAKPQPWITPTIRRLRSYTRAAERRWRKSHNRSDWVHYKFMLHNLNWALTAARQSYYTSLINSLSHSPQQLFQTFSSLLKPPMAPPPPTLSAENLASYFTEKIEAIRHELPLLPSSSSPITQMPSATISSFTPVSHDEVALLLTKANPSTCSSDPIPSRLLQQIAPSVIPTLSLIFNLSLSTGSFPTAYKHAHVSPILKKPSLDPSIPANYHPISLLPFVAKLLEKAIYNRCLHFLSSHSLLNPLQSGFRPYHSTETALSKVTNDLLVAKSNGLFSILILLDLSAAFDTVDHSLLLDTLFSLGFRDTTLSWFSSYLSDRSFSVSFAGSSSRSCPLTVGVPQGSVLGPLLFSLYTTSLGDLISSHGFNYHLYADDSQIYLSCPNLSADLQSRISNCLSDISNWMSSRHLKLNMSKTELIIFPPKPSPPPTFPITVEGNTILPVPQAHNLGVILDSSLSLTPHIQSVAKACRFHLCNISRICPLLSSDTATTLVQALITSRLDYCNSLLVGLPASSLSPLQSILHSATKVIFLKRRSDHVTPLLNKLQWLPIASRIKYKXLCLAFKALHNLAPSYLSSLLTPYSPXRTLRSSDTGLLAVPRTRHSISRLRAFSLAVPHAWNALPPXLCLLTSLASFKSQLKSHLLQEAFPNPS
>L2_Plat1a_pol#LINE/L2 1417-4647 [Ornithorhynchus]
MLLYYRFRLLLFIVVSAATHLSGLAMSLLPPSPLPPLPILPFPFPSLAQLFPALSSVSSPPPLSRPRTPLYQRYPSSPSPYSSPHQTPSSPPPPFSLPHPCPIPVLLSHRHPSSPSPRPGPRHLLPIQTLPSPRPSPPPPLAPTATFKCGLWNPRSITGKLPFIHDLFLSRSLLLLALSETWLSPEDTVSAAALSGGGLSFSHSPRLTGKGGGVGFLLSPRCRFRTIPPPPSLSFPSFEAHIIRLYHPLQLLVAVIYRPPGPTSDFFNHLDPFLTFLLSFSLPTLILGDFNIHTDVPDDSSAARLLSLLDSADLLLHHTAPTHRLGHTLDLVISYRCTISSLTNSEIPLSDHNLLTCLISHTPSPCKSSLLPHRDLRSLDPIRLSNSISPHLAALSSLPTLDDRVSALNSTLSTHLDSLAPLSLRRSRSTNPQPWITSSVRLLRSYARAAERCWRKSKHRADLTHFKFILSCLNSALSSARQSFFSSLIDTHARHPRRLFRTFNSLLRPPVPPPPPSLTPNDLATYFLTKINTIRSELPKVTPPPLPSPPPTPSPTFPSFPAVSSEEISSLLASATPSTCASDPIPSHLLKTIAPALLPSLTSIFNHSISKGSFPSAFKHAHVSPILKKPALDPTSPSSYRPISLLPFLSKILERVVYNRCLEFLNSHSLLDPLQSGFRPLHSTETALSKVTRDLLLAKSNGSYSILILLDLSAAFDTVDHPLLLHTLSHLGFTDSVLSWFSSYLSGRSFSVSYAGASSPSHPLTVGVPQGSVLGPLLFSIYTHSLGELIRSHGFDYHLYADDTQIYISAPVLSPSLQARISSCLRDVSTWMSARHLKLNMSKTELLIFPPKPGPLPDFSITVDGTTILPVPQARNLGVILDSSLSFTPHILSVTETCRFHLYNIAKIRPFLSTQTATLLLRALVISRLDYCVSLLSDLPSSSLAPLRSILHSAARLIFLQKRSGHVTPLLKQLQWLPIDLRSKQKLLTLGFEALHHLAPSYLSSLLSFYRPPRTLRSSAAHLLAVPRSRLSRRRPLGHVLPRSWNALPPHLRQTDSLSLFKTLLKNHLLQEAFPD
>L2_Plat1i_pol#LINE/L2 1544-4684 [Ornithorhynchus]
PHHFLLPPLLPSAPPDTHLPLPLSRPALSRFLLRLLPSSPALTKNLTLPAPPLIPLPLRSSPPNSLLPPTPHPGPSVPPPRLILLSPPRPPPPRSHPNPALPPLSPPPSPATTAAFKCGLWNPHSITGKLPFILVLFLSRSVLLLALTESWLTPEDTVSSAALSSGGLSFSHSPRLTGKGGGVGFLLSPRCRFRTIPLSPSLSFSSSEAHVIRLYHPLQILIAVICCPPGPASNFFNHFDPFLTFLLSFSMPTLILGDFNIHMDVPGDSSAARLLSLLDSANLLLHPTSPTHQLGHTLDLIISNRCTISTLTNSEIPLSDHNLLTCLLSHTPPPRKSVLLPHRDLRSLDPIHLSQRITPHLASLPTLPTLDDQIDALNSTLSTQLNSLAPLSLRRSRTTNPQPWITSTVRLLRSYARAAERCWRKSKHQADLVHFKFVLSCLNSALSSARQNYFSSLIDTHAHHPRQLFRTFNSLLRPPVPPPPPSLTPNDLATYFIRKINTIRSELPKITPPPPPSPLLSTPSSTFPSFPAVSSEEISSLLSSATPSTCASDPIPSHLIKTLAPSLLPSLTSIFNRSLSNGFFPSAFKHAHVSPILKKPSLDPTAPSSYRPISLLPFLSKLLERVVYTRCLEFLSSNSLLDPLQSGFRPLHSTETALSKVTNDLLLAKSNGSYSILILLDLSAAFDTVDHPLLLNTLSNLGFTDSVLSWFSSYLSGRSFSVSFAGSSSPSHPLTVGVPQGSVLGPLLFSIYTHSLGELIRSHGFNYHLYADDTQIYISSPVLSPSLQARISSCLQDISTWMSSRHLKLNMSKTELLIFPPKPCPLPDFPVTVDGTTILPVSQARNLGVILDSALSFTPHIQSVTKTCRSHLHNIAKIRPFLSIQTATTLVQSLILSRLDYCISXLSDLPTSCLSPLQSILHSAARIIFLQKRSGHVTPLLKNLQWLPINLRIKQKLLTIGFKALHHLAPSYLTSLLSFYXPARTLRSSGANLLTVPRSRLSRRRPLAHVLPLAWNALPPQIRQTSTLPPFKALLKAHLLQEAFPD
>L2_pol#LINE/L2 216-3170 [Mammalia]
MPFIPVYVSHHKKPKTPRSSLIPQTLIPIXLCTSPFLTPSPIPPQLLKPFHCALWNSRSVISKIPRILNLFSERSLHLLALTETWLSPEDTASPAAFSSGGRFLSHXPRTTGPGGGVGVLLAPHCCFQTILPPSSLKHPSFESHVIRLHHPLPLLVAVIYXPPGHSPSFLEDFSSWLTVTLSNTTPVXILGDFNIHIDDPSNTLASQFLDLLSSNDLVLHPTSATHSHGHTLDLVITNNCNPSIISISSIPLSDHHLLSFQLTPSSTLTPTILRPHRDLQSIDPTTFSLSLTPLMSSLPSLPSLNSMVNHYNHSLAYTLNSLAPLSLRXTRLAKPQPWLNPTLRLLRACTRAAERGWRKTHNHADWSRFKFMTTNLKWALNAARQSYYISLVHSLSHSPRXLFHTFSSLLKPPTPPPLSSLSADDLASYFTEKIEAIRRELPXTPTTTSTHLPASVPTYSAFLPVTTDELSVLLSKANPSTCALDPIPSRLLKDIAPAILPSLSCIINFSLSTGSFPSAYKHAVISPIFKKQKFSLDPTSPSSYRPISLLPFTAKLLKRVVYTRCLQFLSSHSLLNPLQSGFRPHHSTETALVKVTNDLHVAKSNGQFSVLILLDLSAAFDTVDHSLLLETLSSLGFQDTTLSWFSSYLTGRSFSVSFAGSSSSPRPLNVGVPQGSVLGPLLFSIYTHSLGDLIQSHGFKYHLYADDSQIYISSPDLSPELQTRISNCLLDISTWMSNRHLKLNMSKTELLIFPLKPAPPTVFPISVNGNSILPVAQAKNLGVILDSSLSLTPHIQSISKSCWLYLQNISRIRPLLTTSTATTLVQATIISRLDYCNSLLTGLPASTLAPLQSILNTAARVILLKHKSDHVTPLLKTLQWLPISLRVKAKVLTVAYKALHDLVPRYLSDLISYHSPPRSLRSSHTGLLAVPRTRQARSCLRAFALAVPSAWNALPPDIHVAXSXTSFRSXLKCHLLREAFPDHPI
>LINE2_CH1_pol#LINE/L2 1-661 [Crotalus horridus]
DLSAAFDTIDHGILLRRLGGVGVGGTVLRWFSSYLSGRSQSVLVGGQRSTPRPLECGVPQGSVLSPLLFNIYMKPLGEIIRQHGVRFHQYADDTQLYISSPSSLSEAADVMGRCLEAVRVWMGVNRLRLNPDKTEWLWMLPPKDHVNCPVLTLAGENIPPSERVRNLGVLLDPQLKLEHHLTAVAGRTFAQVRLLHQLRPYLDREALLTVTHALVTSRLD
>LINE2_NT1_pol#LINE/L2 1-661 [Natrix tessellata]
DLSAAFDTIDHGILLHRLEGMGVGGTVLRWFGSYLSDRTQCVLTGGQRSTLRPLTCGVPQGSVLSPLLFNXYVKPLGEIIRGFGVKYHLYADDTQLYISTPNHPNEAVEVMSRCLEAVGVWMGDNRLKLNPSKTEWLWLPAPRFSQLTPSLAIGGEQXPPVERARNLGVLLDARLSMDDHVASRGKGAFHQVRLVRQLRPLLDRDALRTVTHALVTXRLD
>LINE2_VA1_pol#LINE/L2 2-663 [Vipera ammodytes]
DLSAASDTIDHGILLWRLRGLGVGGTVLQWFSSYLLGRSQSVLAGGQRSTSRSLVCGVPQGSVLSPLLFNIYMKPLGXIIRGFGVGYHQYADDTQFFISTPNHPSDALDVMSCCLEAVRVWMGRNRLQLNPDKTEWLXIPASRDIQNIPSLXMGGEXLPPVDRARNLGVLLDSRLNLEDHIVAVTRGAFAQVRLVRQLRPXLDRDALCTVTHALVTSRLD
>LINE2_WA1_pol#LINE/L2 3-663 [Walterinnesia aegyptia]
DLSAAFXTIDHGILLRRLEGLGVGGTVLQWFSSYLSGRSQSVLTGGQRSSPRLLPCGVPQGSVLSPLLFNIYMKPLGEIIRGFGVRYHQYADDTQLYISTPGHISDALSVMSRCLNAVQIWMEGNMLRLNPAKTEWLCIPASXSDAEVPSLVMGEEVLPPVDRARNLGVLLDSRLKLEEQVGAVARGAFAQIRLVRQLRPYLDRDALRTITQALVISRLD
>Maui_gag#LINE/L2 146-1078 [Takifugu]
PILNKYRAPPIISISMASPSVSPGVSPCVCSACEMFSYSSASFSEGNRCRKCSLFMALEARLSELETRFRSLELXGVASGSQEKVAAAELPSVATASCPPAAAEQPASQGGWVTVRRKRSPNQRPTVHHQPLPVANRFSPLGDTPAEKPTLVIGDSVLRYVKPTPATIVRCIPGARAGDIEANLKLLARSKRKFGKVIIHVGANDTRLRQSEVTKINIESVCNYAKTMSDSVAFSGPLPNLASDEMFSRMSSLRRWLSRWCPENQVSFVDNWNSFWGKPGLIRRDGVHPTRDGASLISSNLANFIXPKVT
>Maui_pol#LINE/L2 1079-4186 [Takifugu]
QTRVQTRMQSCSLTHLSAASVEPSSTNNNIFNTIEVVSVPRLKVHQAQSRGAVNHHNLIKINTKAQVGETNSTIKCGLLNIRSLLCKSLLVHDLIADHHIDLFCLTETWLQEEEYVSLNESTPPTHLNYHIPRVTGRGGGVAAIYHSKLLINPRPKHGSSSFESLTLGITHLNWRTEKPLLFVVVYRPPAGPHSEFLSEFSDFLSDLVLRTDKVIIIGDFNIHVDVVNDSFRNGFISLLESVGFLQQINQPTHSFNHTLDLVLTYGVEVEHVSVFPQNPLLSDHSLITFTFMIKDSSMFRTQSYYSRCLSDNAVAKFKEVIPVLIPGPPCVXXGXSHYNLSPAEVDSIAEGAAASLXITLDSVAPLKKKIVNQRRCAPWYNSHIRTLKQKARRLERKWYSCKIXSYHLAWKDCLVAYKKALRKARTAYFSSLIEENQNNPRFLFSTVAKLTKSHSVLDPRIPSSLSGEDFMSFFTDKVITIREKANQAIPTAARPSPDVLTVGTYRVSNEPLNSFXPIYFSETSSLIQKSKSTTCLLDPIPTHLLKDVLPXIGSSILDQINCSLATGYVPRSYKVAVIKPLLKKPSLDPDVLANYRPISNLPFISKILEKVVVTQLLDHLQRNSLFEMFQSGFRAHHSTETALVKVTNDLLXASDHGLVSMLVLLDLSAAFDTVDHSILLQRLEHVIGIKGTALDWFRSYLSDRYQFAHVHGVPSSYSRVSHGVPQGSVLGPILFTLYMLPLGNIIRQHGINFHCYADDTQLYLSMKPEETEQLVKLQACLKDIKSWMXSNFLLLNSDKTEVMVFGPKXLRDRLDHXITLDGISLASSLSVRNLGVTFDQDLSFNSHIKTVSRSAFFHLRNIAKIRKLLTQHDAEKLVHAFVTSRLDYCNSLLSGCPNNSLRSLQLIQNAAARVLTGIDKRDHXTPVLASLHWLPIKSRIIFKILLLTYKVLRGLAPSYLEELVTPYXPNRPLRSQNAGLLVVPRVSKGRMGGRAFSYQAPLLWNQLPVQVREADSISTFKIRLKTFLFEKAYXQ
>REX5_pol#LINE/L2 31-3360 via tfasty with CR1-17_DR_pol, 2 frameshifts. [Xiphophorus maculatus]
MAPVCTAGRLSLPYLCVLMFVLALICQSFYTSALLIYDRRTLLDLRSSAETKFLYGNPKTLPPVLMGVPDYLLCILATPFRRKRHRVRGRRSGRLVRLKFSLSRIATTGTNLFWSPLDSAYTWLVPLAGSEGRVFQQRPRYRIQRRSRQQGVNSTNLQALRRGVYSAKDQNRPAPVRIGLVNARSLSNKTYILKDFFISNRLDFLCVTETWLSVGELTAFSELLPPDCVYLNCPRKSGRGGGIATFFRNVYKCKPLPASFSSLHSSFELSMFELGRSYPMLCAVIYRPPGYNKDFMNDFSELLAYVLPLYDQVLIVGDFNIHVCCPDKQMVKDFLNLIDSFNFTQWVFEPTHEGGHVLDLVLSFGLPISHLMVGDAVFSDHKPVLFNIDMPSNFVKPCVSARCHRVISQQTAIRFSELFESKISMPSFNDTETLTAWLYSTCQPALDEVAPMKPRKWRTKMEPWLNDRTRAARRECRKFERKWKKDKLQVSFQLLKDSWHRYQLIVKDTKREHLSNIILLNCHKPRLLFHIVDSVLNVPHYTGFEPSLEVCEKFRVFFEDKVAGVRANIMCSASDPSVAVKCSTALSQFEPVTLSLIHEAVGHLKASGSAADILPPRLFKEVLPVLGISITAIINSSLITGVVPKPFKQASVQPLIKKPGLDPFLLSNFRPISKLPFMSKILEKVVYNQLKAYLDVNNILEDFQSGFKTLHSTESALLRVFNDILLATDAGDPVILVLLDLTAAFDTVDHDVLLSRLEHYVGFKGTVLVWLRSYLTDRSFCVDIDDFRSSSAPLLCGVPQGSILGPLLFSLYLLPLGSIFRKHNIAFHCYADDTQIYVPLNRKGVNTVPILLECLDDIKTWMALNFLNFNERKTEVIIFDPGTTCKSTPVDLGPLSHYVKPFVTNLGFVMDVNFKLDKQISAVVKTSFFHLRRLAKIRNIVPVDYFEILIHAFITTRLDYCNSLYVGVSQSSLSRLQLVQNAAARLLTGSRKREHVTPILYSLHWLPVHFRVHFKILLFVFKSLNGLAPFYLSELLHTYVHCPPRALRSASQMNLEVPRTSRRQRGDRAFAVAAPKLWNSLPMLVKQAPSLAIFKSALKTYLFRLAFDSV
>Rex2_Xm_pol#LINE/L2 Translation of AAY298859 28499-29795 via tfasty with CR1-3_DR_pol, 3 frameshifts and 1 stopcodon. [Xiphophorus maculatus]
SGKKKSPWRNAQTVRSARQLCRRAERKWRKTQLHVHCDIYKERLRNYHLTLKHAREPFFADVINKNINNAPALFATVDRITNPPVTLPPEFLMYCNQFSSFFSEKIQKIRGLICTSTIKSVPMLSPNKTNTGKMTQFQLLNYKTLQGIISQLSSSSCCLDVLSSHFFKKVLPVIAADLIQIVNSSLSSGVFPQALKTAVIKPLIKKNNLDKSLLQNYRPPFISKLIEKAVCFLTINNLFDSFQSGFHGYHSTETALVKVFNDIHKNTECGRTTVLVLLDLSAAFDTVDDILLNRLESWVGLSGPLLNWFESYIKNRDFFVSIENFxSKRSKVTCGVPQGSILGPLLFNIYMLPLAQVITGNNISYHNYADDTQLYITMSPGDFDPIQSLNRCLEQINVWMSQNFLQLNRNKTEFIIFGPKEERSRSVVLNLL
>Sake_BM_gag#LINE/L2 290-1933 matches REP_Tth_pol#LINE/L1 check.  [Bombyx mori]
MMTRSIKSRQVDEQLRIALEQLKNTREKYDILLQESEQNEEEMLSVISKNTDLKKQLSQLFIEHSEALEINQKLQDTINTFSQCSDEFCDSLKITAELRHKLAEADDCISDLRSELCKLKEQQPQSLYSELVKSEPSLVAVDTALNFDITTIDLTGSDAETSERSQLVLSKNKVRKYVKINKLIYKTQRKLRNYKSQEYIKFICKQRTSLSHQVAVLTEQSQQIHHKHMEEIECLSTQINNLKSSLENITLNYELAQRDISEHVLAMDNLIDTCNYNQQRFDSLTMQYAECKCSASGCQELPHVEIQKHNVSILSVLESQSNDIMKAAPICIPTTASSQVSREDKIKIKIFSDELGKQMGVALHDLCFGQHVINYCMPGANPAQIFDKILNTTHCLNTVIIIMLGRRENVNQKQILHYVEQVNMLNIKKIIMFTFPYLQDLPTENKIRFNINNAIYNAFDNNNCILTSKKYAFKLIDINNIIKFRYLRTSKNDIFKLSNKNFRQVATSLQYFIHNFLAINLAKKIPASIEQEKNMTCFKTLESASNLN
>Sake_BM_pol#LINE/L2 1906-4878   [Bombyx mori]
DFGICFQFKLISKTKESHSCNYKSINTTTRLYPSKDVNVSIINIFNLVHQNLQGMMGKELEIEMFLNMHNINVFCVTEHWFRNYELLFNFNDHQLSSSFCRENAIRGGSLILVSKCLKCKERKDVVALSVERIIEISCVELEHLIVVCVYRPPDALYDSFENILENVLLKLSVSNKQIFVCGDFNINLLENTNTTIRFRTLLKSYNLPNLFLEPTRTTTTSATCLDNIFTNVTPINKKIINQLTSDHSGQFVSFESNMNSKDKNTLVIVPINKKRIEKFRNNIKQEHSEIIYNKNPNLSYQNMFERINLVFTDVFIPKTVTLKNKTVFSEWATTGVYKSRKKLYDLYSEKAYNNDETFHQYVRNYSKLFRKVCLAAKSLHLSDLIKNAPDKIKMTWNIIGRESGKVRNSHQEFSLKIDDKLVTSHEDVANAFEKFFSDIPVSTTTSLNSSPTAAEILLHNHVNKCNEIFKFKKINSSNIIKSFNSLNVKNTADLWGISVKVLKSVIDIIAPHLVSIFNDCIRCGVFPDLMKHSKVIPLFKSGSTDDPSNYRPISVLPTLSKIFEKIILTQLLEHFNSNNLLHNKQFGFTRGRSTTDAGAYLVKNIFKSWEESHDCLGIFCDLSKAFDCVEHETLVRKLHHYGIRDGALELITSYLSGRIQTVDVKGNRSSGTLLKMGVPQGSILGPFLFLIYINDLPSFIESRHEVVLFADDTSLLFKIKRQLQVYDEVNDAISCVVHWFRINNLLLNSKKTKCIKFTLKCIKPSLNVRQVDSNVIVSEESLELVESTVFLGITVDSKLQWGPHIHKLASKLSSAAYAVKKIRMLTNADTARLVYFSYFHSVMSYGILLWGNAADVEMIFILQKRAIRAIYNMHSRESLREKFKEIKVLTMPSQYIFENLMYVRKHIEEFPKMSDIHNRNTRNKHKLVVPMSRLHKIRNSFGCLSVRLYNKIPQDVQNLHIHRFKKTIKEHLCNKAYYKVNDYLEDCTKWE
>UnaL2_pol#LINE/L2 Previously 55771211_Aja_pol and corresponding to gi|55771211|dbj|BAD72127.1| reverse transcriptase [Anguilla japonica]
MFINPIPLCALPRPKWSIHRRRNLSNMIYPPLSTPQEFTVTGGLWNCQSAVKKADFITAFAKTKSLDFLALTETWITPDNTATPAALSAGYSFSHTPRASGRGGGTGLLISLAWKFCVLPSPNPTSSSFESHAITVTHPSKFHIIVLYRPPGPLGSFLDELDTLLSSLPEDGTPAILLGDFNLSPETSQLSRVASLLQSFGLSLSSSPPTHKAGNQLDLVFTRSCSIPQLTVTPLHVSDHFFLSFPLSYLHPLNSSNSSPTVTFRRNLSTLSQSSLISTALSTLPPPASFSNLPVDLATSTFNSCLSQSLDSLCPLVSKPARSSPPCPWLTESLRSSRTSLRAAERKWRKSRSSDDLTAYHTLLAAFTSALTSAKASFFQSKISACVSNPRKLFSTFSSLLTPPPPPPPSSLSADDFLAAFEGKVATIRNSFAHPVSPPPPRDRPTATLTSFEMLEDSDVLQLITSHRATTCPLDPIPSKVLQSISSEFLPYLSSIVNSSLSSGHVPSDFKMARVTPLLKKPTSDPSDVTNYRPVSLLPFLSKTLERAVLKQLTSFLHQNNLLDPHQSGFRSGHSTETALLGVTEALATARASRLSSVLILLDLSAAFDTVNHKILLSTLAGMGIAGTALSWFASYLADRTYQVTWKGSASASHPLVTGVPQGSVLGPLLFSLYTRSLGSVINSHGFSYHCYADDTQLFFSFPPSVTQVNDKISSCLADISTWMASHHLKLNLNKTELLFFPCKTSLLRELSITVDGTTVTASHSAKSLGVVLDDQLDLKEHIKATSRSCRFLLYNIRRIRPYLTTHSTQLLVQATVTSRLDYCNSLLASLPACAIQPLQMIQNAAARLIYNLPKFSHVTPLLRSLHWLPVAARIRFKTLTLAYTAANRTAPIYLQDMIRFYVPARPLRSAEAGRLVTPPTRPKGSQSFSTLAPQWWNELPVPLRTSPSLPIFRRGLKTHLFRLYLD
>CR1-12_HM_gag#LINE/L2-Hydra Fragment.  [Hydra magnipapillata]
RSIMKPIFGKKVAFNRNSIAGERTVRESYIFVGGVCNSMSEEDLSNHIKNEIGIEPIKVELNRENKYNRSFKVIIKSTEKDIILNPDIWDTNIIVKPFRLHRVTSRNETPQQSAVNTLHSVQPTQQIFSTSKEQPSFAQQHSYSTRILNSNSKWKET
>CR1-12_HM_pol#LINE/L2-Hydra 461-3506 via tfasty with CR1-43_HM_pol, 1 frameshift.  [Hydra magnipapillata]
MEGNIESKTFENISFCAYNCQSFKSNSIYISELVKSFDIIFLSEHWLLNIELFVLKNIALPTHKVFFHAAEKKAFGRPFGGNAFIIKKDVLLSPHIIYEDDNILAIKGKNKCHNLVFIGIYLTSCRNNEESLSKYEQQLNLITSIVKNYEDVSECIIAGDFQSYPETLYDSEIRNNKKRNKFSNHLTNFIKSNKLSFIDIISGAGPTYTYQHKTLSNSSYIDHIAALKESSLSFINTSVIPPSPFNFSDHLPIATNIVVTHTNLSTVINSIMHKYNYIPKYAWNNEKFINIYNHNLSVAFNYYTFNEEEIEQELKQTCEKIQNAALLAVKQCFKQQICKYSKSWWTTDLKKCKENLSFNYKQWQKSNYNKTQECIEYKRYIFSRKNFRKAVKAAHNKKIHEKTINIENLRTTNPQRFWDNIRKIKTKATTRLFTINKSQNIKDIVQEFRQHFQTLLNTPLITNNNHNPSQIPPLSKEPNSLIITSADIINCISQLNSNKSPDSCGLSAEHLKNSHNNNLLLWLAKFYNSILSNGKVPNDLSTSTIIPLVKSYKKSLNNPDNYRGISILPIFTKLLEYLILLICPSITDSHSHQFGFKKNSSTLHAEFLLSETVKHYKNNNTPLYMCSLDANKAFDTCNWDLLFEKLYFQKKLPLSVVHTISSLYHSGTANVSYQGVTSNQFSLSQGVRQGSILSPHLYNIYTESILNEIVSECKVGSTINGIYTGVIAYADDVILLSPTISGLQELINRFQTYGVANFIKLNTEKTEFLISGKSYIPNNVIKINGVSIYLQNKLKHLGFQWDNDTSKNKIATLQKTNLNERITQFQSVAKALIDSGIRYCQPSTIVHLYNTLTVPKLIYGLELCKYDTNFLSKIDAVGRAVLKSFFCISKYSKNYLHSFFKIEDISTILLRNKVNLFIRLLKNQTCYSLIINQIQETQNKKSFTNEAFDACNTLDLNFIQCMLNGKKIKLTQPVVELQTNVMLILKETFQFWNLKEKREAFKILMEENVPRTLSQ
>CR1-43_HM_gag#LINE/L2-Hydra 121-1391 Distant similarity to WORF_DMi_gag and CR1-1_DWil_gag at C-term  [Hydra magnipapillata]
MAPREIGELFLTIQSSNNILENYIINVEEICSHPRDVIIYGFSQFKEAEVFKLRVELFQEILERFDIEQFSLLNIILDAEDPVKKNLRKRYKILTCLDDIYLMSISLAENQLHKDFIKLISNSKQASQQMYQPPDINMALILKEVIDRLKALQLENKKIMADLHLLQVKYDELQKTNNEIVKNQCASQFNNTSNCEPHKSQENIKSIVSNSIKYHSPNQRNTLEEVTAHSSTEISSLYTDRKNKIRDSYATVVKMQNPEQNNRKPEKEKDCVTDYQEFKVVGKNNKVNKSHMDKQKKEPVFGNKVASNRSSIAGKRIIRESYIFVGGVCNSISEEDLSNYMNKEIGITPLDIKLNRENMYNRSFKVKINSTEKGMVLKPDVWDNNIIVKPFRMRREALTIEKPHQNTENHLPQFLHHSSAFMQQ
>CR1-43_HM_pol#LINE/L2-Hydra 1406-4453   [Hydra magnipapillata]
MGEKELNVTNTNITLCAYNCQSFKSNSYYISKLLKSFDIIFISEHWLLNIESFLLNNIALLTHKVFFHAAEKNTHGRPYGGNAFMVRKKLSSFYIIHEDENILAIKGTLNNRNLIFIGVYLSSCRNNNESYAKYSSQLQTITSIMNNYEDEGECIISGDFQSFPYKIYDSELRKNKTRNNFSKHLTNFIESNQLAFVDIINGAGPTYTYQHKTLSNSSYIDHIASYKQTELCFTNCQVMQSSPLNLSDHLPVSTNINFEGTGLSHEINNIMQKYNSIPKHAWNNERFIDFYNLNLSKAFTSYAFKEDKIEEEIQKTCLYIKNAALLAVKQCFGQKEFYKYSKPWWTPELKKIKDNLSFHFRQWQKSGYNKSTECISYKRFIYSRKNFRKAVKAAHNKKIHEKTKNIEHLRNTNPQRFWGNIRKIKKNTNNRLFTINKLQNKNEIVEEFSHHFQKLLNTPQYTNNEFNPLQIPHLSKEPNSKVISTADIEKCILKLKNNKSYDCYEISAEHLKNSHNKNLLILLSSFYNNMLTNGKVPHGLSTAKIIPLVKSYKTSLENPNNYRGISIIPIFTKLLEYLIIHICPDITESHSHQFGFKENSSTLHAEFLLSETIKHYNHNNSPLYICSLDANKAFDSCNWELLFEKLYYQKKIPLSIVHTILSLYQTGTSNISYLGCTSNKFRLSQGVRQGSILSPHLYNIYTENLLEKIVSESKVGTSINGVYTGIIAYADDIVLQSSTISGLQSLINIVQKYGLSNFIKLNTEKTEFLISGISSILINVIYINGDPIKPQNNLKHLGFLWDNKNKKMTATLQKQNITERVTQFLSVAKGLIRNGLRFCQPATIVHLFNSLAVPTLLYGLELCGSSNKFLNSIDIAGRSVLKSFFNISKQSRNYLHSYFKVDAVSDILFRNKLNLFIRLLNNPICYSIIRTQMPLMNQRSFVGEVMIMCKKADINMLQFMIEGKKIIIARPQEALEANVAAILKQSFQHWNLKEQREVFRTLMEENIPRTMQENT
>CR1-46_HM_pol#LINE/L2-Hydra 1406-4464   [Hydra magnipapillata]
MDERAINSNTCSFSLCAYNCQSLKSNSCYISTLINSFDIIFLSEHWLSNVERFILYDLSAPTHQLFFHSAEKKEYGRPFGGNAFLVRKNLLLSLHVIHEDEHILAIKGSYGNSVFIFIGVYLTSCRNTSESLEQYLSQLSVIASIINTYEDEGECIIAGDFQSFPENIYDTEVRNNQTRNNFSXHLSNFLETNELSFLDIISGTGPTYTYKHKTLNNSSYIDHIAVLKESSICFTNCKIIPPSHLNMSDHLPIATHINLKNNSLTPVINNILKKYNTIPKYAWKDDNFIEIYNRNLSQFFKDYTFIGEAIEKQTQTTCEKINNAATLAMEECFQKKEFCIYSKSWWTPEVKLCKDILSFHFKEWKKCNYNRSQESISFNKYKLARKNFRKTVKAAHNLKINKITKNIEYLRKTNPQKFWNNIRKIKSSPNTRIFTINKKQDRKEIVEEFRQNFNTILNTPTITNNNSEHRNIPQLIVEPNKILLSTSDIESCIRKLKSNRSRDSCGITAEHLKYSSNNNLVTWLSKFYNXIFNNGAVPEYLSTSIIIPIVKSYKKSLNNSDNYRGISITPILTKLFEYIIMQVCPEISDSHSHQFGFKQNSSTLHAEFLLSETLKHYNNNNSPVYICSLDANKAFDSCNWDLLFEKLYYNKNLSLSVVRALQSLYRSGTANISYLGHKSNNFRLSQGVRQGSILSPHLYNIYTESILSQIVSDCKVGTTVMGLYTGIIAYADDIILQSPTLSGLQELINKVQTQCQNLYIKLNTEKTEFIISGKSLVTKNIIQINGFFLKLNNKLKHLGFLWENQGHGQNIATIQSANVNERIIQFQSISRALIKSGIRFCQPVTIVHLFKSLAIPNLSYGLEICDYNNTFLNKLDAVGRSALKFLFSISKYSKNYLHSYFKIDDVSTILVQNKLNLFIRLLSNPTCFSLILTQISNVNKENCFINEIMKICNRLELSFMQCLIKGEKIIIKRRNDDVEDNIAEILNQSFEFWNIREQRMIFKNLMEESIPRRI
>CR1-58_HM_gag#LINE/L2-Hydra 138-1541   [Hydra magnipapillata]
MAPRTVSEIFVYLNSDLNTFECNFLKNLEEICSHPKDIIIHNLNSMKENVIRSLRERLFFEVLDSFSSEQFREINVTLDSENPMEKNLRKRYKTTKCLEDIFIFSITLCENQLHKEIXKTLISCKNIETAHLDDKFLTSSLKDLLQISKSIQNENIEIKVELGLLKEKISIQNELIQDLIVSNDNLLFLKNQPRQNINSSLKHDKNTCSKSIAEDTQNVNNSCGKLFKSIPKVSNANTENLKSDYYAQCENKLFNYHTLNENKNSNVTANAAKDNFQQPCGKTNASIYTESQPHNIKTYAKVAAQKQQTSDKTNQFKEKPSNIDDNPNSFNLVGKNNKPVRQTNILPLEKKHKLSEPIFGTKTPGNETIAGSRIIRRFEVFIGGVSNRINEEHMKLYMETELGVTPISITLNRENEFNRSYRVSVSNSEKDKIFNPSLWDNNIIVKPFRKKRIYSNVDQNLVSNGGQ
>CR1-58_HM_pol#LINE/L2-Hydra 1558-4650   [Hydra magnipapillata]
MDPSTIREXNKSSTTFDICTFNCQGLKSNIDFTKSLIQSYDITFLCEHWISKLEYSVIRDISNNTHSIYFHQSNKHEKGRPFGGNAFFIRKNKFQNIRVIYEDDHILAINFEKNDLNIIVIGLYLSSSRNSLSSLEEYKGQLDTVKGLIDSYEGNGNIILAGDFQSFPHQMYDLFERSNSKRNSYSVHLSEFLKTNQLELVDVTKGSGPNYTYRHQTLPNSSYIDHFAVSKYTSFINLKCIVHPECSNNLSDHLPLSISVEVKYTECNTIELAEDTNIPSYAWNDSNFINSYNVHLTNRFNNLNFTNDYEYDLLQIYKKITDSAQIAFKETLKNKKQCLYSKSWWTPELSRSKTILSIHFKKWRDSGFSKELNSVSFNRYQMARKNFRKAVKSAQNNKICAQYIKIEKLKNTKPKNFWNAFRCLNKDVNSRLFTINNKKDKESITSEFANHFERVLNTPKITHRKENHRRIPPCTKHDDVTITEENIIGAISNLKLKKSPDSFGISAEHLKYAKCDTLTKWLIKFFNYSINYGSTPISMSTSTIVPLVKSYKKSLDSPSNYRGISIIPIFTKVLEYLILIICPDIRDTHSLQFGFNANSSTLHAEFLISETIKHYNSNHSPVYLCSLDAEKAFDSCNWNILFEKLYFDKKLPLCIVNTISSLYNNSSATVSYQGCKSNSFPLNQGVRQGSILSPHLYNIYTESLLETIKNQGIVGTSINGNFTGVVAYADDIILLSSTLSGLKKLIKTCNIYSNLNCIKLNAEKTEFLISGKAQIQTNTITISGNKKNLQNKLRHLGFTWDTKHSVFASLGYSNVDEKISNFRAVVQTLIQSGIRFAHPSSISYIYKSLAVPTLTYGMELCENNPGLMKKLDIIGRSALKSFLNVSKHSKNYMNSLFKIQEISKSVQQNKLNLFLRLLNNETTADIIFSQLQHPLFQHSFVSDIQELCHLQILNFQNLIQNKKKVKIPLSKSKIPSEVERNLKYAIECWNAKEQRGVFKQILEENVFKRKSSEITFLFFSFYLVNWVLNK
>CR1-67_HM_gag#LINE/L2-Hydra 148-1448   [Hydra magnipapillata]
MAPRSIEEMFIYLKCDIYTFEENFLKNIEEICSHPKDLVIASMNSISESTIRNLRERLFAEIVETFCADEFSEANITLDLTNPVEKNLRKRYKTSLCLEDIYILSITLCEKQLHKEIVKVIISTKNVDTLPNDKFLTKSVKELLHISKEIQKENKEIKEELILLKEKIIFQNKLIEKLKIENRQSELDISLLQPCQIPKLKIDGYTQCENKINNPAATKNQTQTTHKSFLNVEYKPQLLKTFANVVAQTHSNTNQPQIDAMLTTKINKKTNIDQQLHASNTNNDENNFTLVCRNSKSNHKTQNRSLVKKHRISEPVFGTKISENKTIAGERIVRKFDIFVGGVSNQINEELFKNYLETEIGISPLSVILNKENEYNRSYKVTVNNTEKNIIFNPALWDNNIIVKPYRKKRLYTNISQNLETNGNQEDFHRSKWI
>CR1-67_HM_pol#LINE/L2-Hydra 1439-4472 via tfasty with CR1-58_HM_pol, 1 frameshift.  [Hydra magnipapillata]
MDLGNIFKEDKLPTTFNLCTFNCHGLKSNFEYTKSLILSHDITFICEHWLSNLEYFIIKNIYKNTHSSFFHQANKHEQGRPFGGNAFFIRKHLFQNIIILYEDDHIFAINLKKNQTNIIIIGIYLSSSRNNQTSLEDYKSQLDIISGVINNYEGVAEFIVLGDFQSFPHGIYDSLKRASSTKNNYSVVLSNFIKSNKLELVDVTKGSGPNITYHHNTLPNASYIDHIAFSKYTSLLYSNCFVIPFLSQNMSDHLPVSIEVGIIGQSSQENNHKNSDKYSIPNYAWNNNDFLQLYNNRLNTNFNFHNFTNDNYDEELIKVYTVITKSASEALNQYLSMKTPSLYSKSWWTPELSRSKNVLSFYFKKWRETGFVKNLNSQIFIRYRMARKNFRNAVKNAQNKNLYKEYIKIETLKNTNPKYFWKTFRNIKKDANSKLYIINNKKDKDSITKEFAYSFENRLNSKAITYTSTNLKIPPCTKFDEVIISDENIKTVISRLKLNKSKDAFGISAEHLKNASCEALTEWLRKFFNFSINHGQTPKSMSTSLIIPLTKSYKKSLTDPNNYRGISIIPIFTKLIEYLILLICPEIKETHPLQFGFTKNSSTLHAEFVISETIKHYNNNNSPVYLCSLDAEKAFDSCNWDILFERLYNDKKLPLYIVNTISSLYYESSASVSYLDCKSYPFYLTQGVRQGSILSPHLYNIYTQNLLETLQNESVVGTSINGNYTGVVAYADDIILLSSTLSGLQKLINICNMYTHKNCIKLNADKTEFLLTGKKQIKNCTITLNHQQIKLHDKLSHLGFTWDTKSSPFASLNKSNIDHRISNFRTVIQTLIQSGIRFAHPNSIVQLYKTLAVPTLTYGLELCEHKKMLMQKLDIVGRNALKSLLDVSKHSKNYIHTLFFIEDISIIIQQNKLNLFIRLMNNKMTYDIIRSQLKNKTAPQHFLDSIKGLCNNHELNLETIMESKKKIKIVGLKNLIPETDLQSLKCAVEYWNLKEQRTIFKDILEKHIPR
>Baggins1_Cis_gag#LINE/LOA 632-1808, 1 frameshift [Ciona savignyi]
MEQKKNHEKQPADDGLSSTSLSRLADKPEANPDXASIQCSAASPPTTSAAPQAFFSDSDGVSAVTSVTSPLAHKLSNLTMEQAELSDLSDSGEANSIRRTREACEPAPSKAEYKREKNRRQKARKRARKANDNLCNRPGPSNTSVPTAAPTGEWQSERQRSAKRKRQSKTSSSTTPTPATKKPRGPSASSTRATSYADAANSSLRLDVLPASGSESLVQADIRYIESAMADSMLDGTLPLIKAKGLVLLKSGTMKVTCMDAASLAAFRRFIRGLPPMPGKNIGYTANGPEDRLNERVYTVWVSDPKVRTNPERFIRLLGFQNSELPIEKFHVRGYVGEVTEEGTHLRVGVEMSAIEDLRKMDFSPHYMAGLLTFVGNRSVEATTHSESLKH
>Baggins1_Cis_pol#LINE/LOA 1809-5513 [Ciona savignyi]
CVMEALKKTSKDLVLCQINLHHCIAAAQQLMGRFQTMGQTPLALIQEPYCKRGKVAFVPQNACCFSDPNSSKPRACILSAKNLVAWPLLQFMDRDTCTIAIADNTNSKNPVVFCSVYMAGDDPTEPPPHKMRELVTHCEQSNLRLLIGTDANAHHYYWGSTDCNSRGHALMEYLMSTRLSVCNTGNSPTFVTRNRAEVLDLTLCSANLLSKVSDWKVSKEASLSDHQLITFRVNNLCKTTPSHHRNVRKTDWMLYLQELTLLCEAIPAAPPKTAKEVDMLAKAVETAITLSYEKSCRLIKRTSNDTPSWWCAELTLLRRCARRSHRKALKLKTPAAWDESKASTRAYKNAIRSRKRASWRKLCEEVNTLPAMARLHRILKKHRSLQIGSLRKSNGDFTSTPSETLHVLLDAHFPENVNNQGSSTNHVKQWSSIQASDEVLVNNIITAERIKAAYTSFKPFKSPGPDGIYPILIQKGLEILCPLLIQIFKASLLLGFIPQRWLVARVVFPPKPGKEDYSTAKAYRPLSLMSFVMKGFERLILWYLQEGPIGQSPLHPNQYAYRAGFSTEDALHNMIIKLEKAVFHNQYALGVFLDIEGAFSNATFDSMIVPLRKYHVNETVIRWISYMLKHRTATAELHGCTEKKQVKKGCPQGGILSPLLWNLLVDTLLRQFTSQEAALVQAYADDLSVIISGPDPSTIGTIAQSTLNRLEKWAINNHLRFAPAKTVVVMFTRRRKWSLRPIFLHNIQLSLSKEAKYLGVILDNKLSWKNHHSSRIKKATAALAQCRRAVGPTWGLQPKIMMWLYCQIIRPILTYASLVSVSATYQRNIQDNLRKVQRLACLCITGAFKGTPTRAMEMLLNLPPLHLYLQGTAIKTAHRLRFLGHWKGTGYSVWHKKSHIDICNQAMEDIHLLSLPVDCSSCTLHLERHFAIQISDRDNITPPVRPSDPSQLVCYTDGSRLDGSTGAGVLIQSTKFDYKFSFPLGSFPSVFQTEILAINHAARILQSWNTAKMSITIHSDSQAALKALMSLKIHSPLLRETWYLLHNLGGLNLVELCWIPGHSNFDGNDQADELARDASSTAFIGPEPSLCIPVCSVRTELEAWMSRKHAEEWRQHCGCRQTKEYLGQGLSLSRELLRLRRRQLRSVLQIITGHANLAKHQSILMRTACATCPFCQEEDETPLHYVGHCPAFAVTRWRNFGVFKSDDLASIPVKHLVSFLQDTGRLDRYIPDPC
>Baggins1_gag#LINE/LOA 332-1771 [Drosophila fruit fly genus]
PYPGTADLCPGGPFISLQLVGTMNNRPKNIKIPQALTAGNVARQFEDRLLDGERPTSVVTPKNAPNRSVPTAQARPVAGGKNRAATPSHSTVVQAGQAGRAKNPLPQLGQPGARDDPNRKGLSGARTKWYLRYLQQGKSPAEALSLAKTPQPLEQRPNSASKRANSTLTPPTETPKRQKVEKSRPLTAPFDGPSTSRAAKATEVRKPSYAAVTGAIKVAVVPEGYPKVVLSSENLSQLEDALLEEIVLSGWDSPIKFGGIHFRVGHLIVDCRNATTAEWLQLAVPSLSKWSGVSLEVKMGDDLPSSHNITIFCPRTGDKTTKWIMELIKKQNDLDTENWRLISRKNEGGGSLLSLGIDDNSCAKIISSDHKLSFRFGDISVCGLKKAKAIKAGTRRVETPRNPPVSAEKEKPNKLSESSEDLADDEDLDATVIEMGDQTPISSQELGMELDLLSKEEAVPADGDLGISRSATPTMEPII
>Baggins1_pol#LINE/LOA 1723-5385 [Drosophila fruit fly genus]
SGHLQISNADDGADHLMVGSTGIAQVNIHRAKAASAVLARMFTKQHLGLALVQEPWYNQGIKGLYVKNAKVIWDQRASSPRACILACRSINYYILTEFLTRDCVPIVVEDVGAAKKTVVASAYFAGDEACPPPEITALAEHCKRMHSPIIIGCDANAHHVIWGSSDVNQRGESLLEFILNNNLEILNVGNVPTFVTRVRSEVLDITLSSRSVASHISDWHVSPEESMSDHRIIRFNIGLNLECSERKRNPRNTNWEGFNASLLRDPVTRVTGKLRTTLELEAAVEDINSCLTNAFRENCSLGRAKRDKDAPWWNDQLEKLRKATRRLFNKAKREGNWDAYRNKLTMYNHEIRKAKRRNYRTFCEAIVNTCEGARLHRAISKGVPESNQALRKEDNSYTIGSKEKLELLLATHFPGSTLQTDGNTPVTAQSRPRATDWAKAKSIVTTERLRWAIGTFQPYKSPGPDGIQPILLQRALSQLAVPIRKILISSLALGHIPTAWSIAKVVFIPKAGKKDITDPKSFRPISLTSFLLKTLEKLVDVSIRSTLLVEHPLQRTQHAYRAGRSTDTALYHLKSLIEDSLTHKEVALCAFLDIQGAFDNTSHEAVNASLARRGLDATTSRWIKSLLASRRAMATIGGQSSTVSTTRGCPQGGVLSPLLWSLLVDELLDRLTRRGILCQGYADDIVIIARGKYEETLCDIIQLGLNMTSEWCKEVGLSLNPSKTVIVPFTNRYKLQRMKAITLSECRIEVSKEVKYLGITLDSKLSFKTHVDNTIDKCTRALFTCRNIAGKSWGTSPRIIRWLYLMVVRPILTYGAIAWGDRARLSTTKVKLHKLQRMACVCMTGAMRTCPTAALEVLMEVTPLHIVIEMKRKATLIRIEGAGNDCNLTSKDAESLKRDIPLLMQPRDEMPAEHRFAQNFSTHLSNKNSWTSLGKVHPTKPQTIKWYTDGSLTDEGSGLGVVGPRLKYHESMGRYTSIFQAEVCAIGRCAEFNLQRNYRGKDIAILSDSQAAIKALSKAKITSKLVNEVRTALDKLGAVNKLTIRWVPGHNNIPGNELADNLARKGAENPLIGPEPFCGVGHHRVLGLLKSIEEEKRLSFWEHLPGLRQSKILLREYNHKRFKTLMTHGKNTVRILTGLLTGHCRLHSHLHKIGIADSELCRFCCMEEESSAHIICDCMALSIRRNRLLGMYVVPRETIAALNPNKILAFIQCIGLQGDL
>Baggins-1_NVi_pol#LINE/LOA 1255-4944 (really starts somewhere around 1340) [Nasonia vitripennis]
MRVAVLSNKMADRGQRNSVNNMNGAGSVPDTTIEFTQINLHHCKSASAVLARRMAGVRTGICLIQEPWIHNGKIAGLNGIGTLISGSPVSTRTCLIVKGLQVETVPKYCSRDLCTARVSYKGTEGERKVIMIAAAYFPYEEACPPEEMVALIRECEAEGTKLIMGCDANAHHTCWGSTDCNSRGESLLEFLAATNMDFLNTGSRPTFRNAVREEVIDITLASRNVWSEVMDWRVSEEVSMSDHQHIVFRLGGQSTLDQLIRNPRKTNWVGYREELKAKISCFPVTYGTAEDIDHCSRILRDIIISSYENNCELRLKRPSKGAPWWNKSLEKRRKKVRRLYNRSKHTKSDKDKRAYRAEQKEYKKEIEKAGVEGWKRYCKSRSTLSDTARLCSVLQHPKKPLTDSIRLVTGDWAKNGQEALXGLMETHFPDFREGARSEAVQLMARGEDWRLAKRVTDKARIRWAIGTFEPYKAAGPDGIFPALLQQGMDVLVPALEKLYRACLALGYVPEEWGQARVAFLPKPGKTQHAVAKDFRPISMTSFLLKTLERLVDRYIEESSLVEAPLHSKQHAYQTGKSVDTALVDAVSFIQKGMKNRGLVLVAFLDIEGAFNYTTGEAISAGMEEHAIPATVARWISVMLRTRTIVAAWGAYSCKGVVRKGCPQGGVLSPTLWCLVVDSLLCILNEAGINAQAYADDIVILIRGDDEDVLAGLMQFALGLVEKWCNKVKLGVNPNKVSVMLCTNRYKTKPMEGLQLHGVPLKLVKEVKYLGVTLDARLNWGKHIKDKCEKAIGTFWACRRAFGNTWGLEPDKVRWLYDAIIKPRLTHGALVWGHKCELKTHTGALDRVQRLVMGGITGSMRTTPTVAMERLLELPPLGKVIRANACRTFCRIAESTNCSDFKDAALLEQVMPLMEERGCDRMAERIYFSKPFSIIIPEREEWKTGSHELLENSVVWFTDGSKNENGVGAGAWEKGDTQEIVCSLDHYATVFQAEIRAITEAAKWLLERGTGQRTVSFCSDSRAALMALDSISISSKEVLRCRQALESLAEHNAVRLVWVPGHSGVVGNEKADRLAGRGADGIRARRCAVAVPTCEVNRAIKDWLNSQLSDKWTNANGLRQARALMGSSPPEEWLRTIRGLSRNRLRLAVGWLTGHWRVGYHLWNLRLRDSGSCRWCEYETETTSHLLCECPAFAGTRQRVWGVPMLGLEELRLKSLASICRVAEAINKGL
>Baggins-2_NVi_pol#LINE/LOA 1-3611 via tfasty with Baggins1_pol, 1 frameshift. [Nasonia vitripennis]
TQINLHHSKGASAALVRRMAKMHTGICLIQEPWLVAGRSGVWVGAGRIFRDPTCSVPRACILVKGFDALLLPARCSRDLTAIKIRLPVGEGSEREVVVASGYFPYDSQEEPPPREVQDLVEYCRQRSIPLILGCDANAHHIVWGSSDTNGRGDALLQYLVTTSLCIMNRGREPTFYNSVRSEVIDLTLCTVGMEGWVGSWRVSNEPSLSDHRYIQFEWKERCSETRAFRNPRKTDWAFFRENLRNELQSFKPSFGTTDELDHWAFELGEIVNISFQRSCPWTIPRGTWGTPWWNRELEDLRRETRRTLNRAKNTRNSIDWRIHREAQRLYKNRINAVRIKGWRDYCEDIERYPDAARLLRILAKNPEVWLEAIRLPTGEYATSEEECLKLLLEANFPGFRLSHEMGDESSGRNRQQRAAWDLAAKVVTPEKVKWAIRNFQPFKAPGIDGIYPAFLQEGLEELVGPLVKLFRASVALAHVPEIWKTAKVVFIPKTGKPSHTTVKDYRPISLNSFVFKTLERLVDRFIQDDILTVFPLHPNQHAYRAGFSTETALHSAVWRIEEQLERGEVMVGVFLDIEGAFNCTSIEAVVKEAGLHGMPGPLIKWLQGMLTRRTVISSLGTVTVSGEVSKGCAQGGVVSPTIWCLVANGPLEALNGWGCYAQAYADDFLILIKGSEIGAAMDAMQLALRKVERWCCSTGLSVNPDKVEMVIFSRKYKLDAYRAPKLSGVALQVKDSAKYLGIVLDKKSTWEKHLTAQCDKFLVALWTCRRAFGSTWGLSPRIILWLYRAVLVPRLAYAALVWWPRAELAGARAAPEKLRGQVLRGATGAYRTTPTKALGILVKVEPLHLTIIGMAAKAAHRLNAYGQWTQGTRHTRLPGGVGLLPEFSIKTDMMIPRYFFGRRYGVVIPTREEWKARRDSLPGTGDVWYTDGSRAETGTGSGYYCRRDGRGTFFSLGRYATVFQTEIYAILTCAQRNIELGARDRIITICSDSQAALRALMAHRTTSRLVWECKVVVNQLTAHNNKVRLLWVPGHTGIRGNEIADRLAALGAKHPPIGPEPYTGAARCLLAGEIRDWVEREHTKEWQGTQGCRQAKAVMGQDTNVGWTKCIAGGSRNNSRLLTQIVTGHIRLRYHGLKMGKEATGVCRWCEGAEETPTHVLTVCPKFAQLRHQCLGELFPTYEEIRALDAGAILTFWRRAGLPA
>Bilbo_gag#LINE/LOA 456-1865 [Drosophila fruit fly genus]
RRALPGWTVPLLCSSWEPYGEIIKYCKQNQKRERHSPNACREKSQAGEGSGPKAGPIRSDAGKTCTVKDAGMNPGGSHPKPGMGGKSTPKTDTMVGQLSNIAAAQPSGEAAGEDLPSTSVQAKKYSYAEKRSAGHILRRQNASQEVSPTADWLKKVEWASTVLPNFSVEPQKVAAQQKRQRSQETPGPAAKRSRILPNVSFAQIAKERTLIGVLDKGSAEGKIPRSQWKWVEAALADRCFELLEKDPGPPPVCKDMGWFQGNIKVVACEDERSVKLYKAAVAQIGEVYAGAKLVAVDWSEVPSRPRARIWVPATFKEPERILTMLQRCNPTLPTSDWKVAKVEASKGPTNQAVVILNKESLAPIEAARGELNFGFSSVTMKVYKSDAAAEARSANKPVEQDVASEIEAPEVDPEPEPALESYSSETELLLDFEAMCRDDILDDSDADITVVENVSNEVSEASADKSPPL
>Bilbo_pol#LINE/LOA 1813-5410 via tfasty with Baggins1_Cis_1809-5, 1 frameshift. [Drosophila fruit fly genus]
MFLMKSLRLLQINLHHCKAASAALILRLVASGGDIVLIQEPWVVGGRVCGLATKDYNLIVAQTEGKIRTCILARKHLNIFLLHNFSNGDNTAASLELQGTRLNLVSSYMAHEESDPPSDLVRKIVSDSERSDTSLLIGCDANAHHTQWGSSDTNVRGESLFSFILNSNLFIGNRGNDPTFIIKNRQEVIDLTLLSHKLLDTIKSWRVLEDHSFSDHRYIETTLSLESTIPTSYVNPRKTNWDTYSAKMEELLPPLAPKCPDTQDDFNRLVDNFTEACNKAFMAACPSTKPRGKKKPPWWSKHIDTLRKDCRTLFNRAKSSSEVAHWENYKSKLTLYKKETRRAKRASWHKFCSEIEDTSEAARLRKVLSKTSPSVGYLKRTDGTWTNSSEDSLHILLETHFPGCTTIEPADTPSEGPETSMGHILTKRNISWAVNSFKSYKSPGPDQVIPAQLQKAGDVAINWLQSIFRKILTVGKIPRAWLKAKIVFIPKAGKPSHTTPKDFRPISLSSFLLKTFERLVGLQRGKPLNLRLSGAQHAYRKGKSTETALHEVISAVEKSLHVKEYSLIAFLDIEGAFNNVIPGAITEALTDLGVDRHLVMLIDQLLTCRTVTSSMGSSTQSRYVNRGTPQGGVLSPLLWNIAVNKILCDLEGEGCKVVAYADDVAIIFSGKFPQTLCELMTAKLARLSEWTKSRGLGINPSKTELVLFTNKYKIPPLNPPILNGCRLSFSDSASYLGLVIDKKLSWNLSIKDRVKKATIALYTCKKAIGLKWGMNPRIVQWIYLAIVRPILLYGVTVWWTALSKGTITKQLSKVQRTAALSISGALSTTPTDALNAILCLQSPELAGKEQAEMAAIRLRDSDQWVSQRTGHASILNGNNIVPAKTDYCVPREYTDTPFETIIPHRNDWLEGPPGPKEAIQIFTDGSKLDNKVGGGIYSELLNISYSFRLPDHCSVFQAEVIAIKEALSCLQELTPEATYINIYSDSQAAIKSLNAITTSSATVANCRKSLHEMAYQFVISLIWVPGHQDIEGNCIADELARAGTTIPLLNDKEDIRMPMATCKLRIKEHFKKLTNDRWQTVPLCRITRQTWPNINRKRTDELCKLSRSRCSSVIRSLTGHWLIGTHANRLGAPYNDFCRSCRDEDEEETVEHLFCSCPALSRRRLQYLGSPFLNDISDMSTISPRRIAGFIRASGWDNG
>CiLOA_gag#LINE/LOA 156-1226 via tfasty with Baggins1_Cis_gag, 3 frameshifts and 1 stopcodon. [Ciona intestinalis]
MPAASGVAAPPVLNTPLGTPATAVETEQVSDALTKKMCSLKVLKPKHNEGGASTSRVASTEDVPNPGTSEEFVDPHAKRRAKRLRQKARIKASCDNPEASSSCNPGNNRPTTSPSGAASGKQQRKRTRAVKSSTGSASSTPGAKRRVEPVLPRKGGETSYKEAASSALRLDVRFATGTDPMTPADIAYINNLLAKAMVDGHLPRTAAKLHECKHLWRLVIxGSSVRTWLRKVPARPGAPARLHSLGPQDRPKERMFIAWIPCPDLRGNYEQFLPVIGRQNPEIPIERVVSAVGNGNDYGFHLRILTALPSLRKANFQLNFLFGLINLVGSQAKAAEEGSESPGQETNPNNQDGALKTG
>CiLOA_pol#LINE/LOA 1253-4778 via tfasty with Baggins1_Cis_pol, 6 frameshifts and 2 stopcodons. [Ciona intestinalis]
QINLHHCIAAATELMAKLNAEGHTFIALVQEPYCLHGKVRYSPTSTTIFSHVTSIHPKTCVIASINLVTWPLAQFTNRDMCTLLLSATNNNKNKTILFSPQFACQVTTEMPPPSQLVQDLITHCELNNTNVIIGTDANSHHTFWGSTDCNNRGTALLEFLMSTMLTVCNTGSTPTFVTKNRAEELDLTLCTNHXXXSHSVTNWKVHKDISLSDHRLITFQVDREYSTYPSHYRNVRNTTWDKYVVHLDKSLSGIPHKLPTTVEELEKYSMVVERAISSAFECSCRLVKRSSTRRQSWWSAELTSLRKLAKRSHKKALRSKSASDWSASKEATRAYKAKIRSSKRTSWRKFCSEANNLPAAMRLHRVLKGSKSHQIGSLRKPNGEFTSTPGEALNVLFDAHFPDDVNISHRHQNTDPSLVLGDDDLETRIVTEDRVREAIKSFDPYKSAGLDKIYPVLLQRGIDILVPHLKNLYxSSLKMGQVQSRWNEAKVVFPPKPGKGDYTSAKSYRPLSLTSFLLKGLERLYWCIYRQVPLGTFSPSQIYQYTYRPGVSIENSLHAVTTKFEKAVFNGQFGLGIFLDIEDAFSNATFESMIEEPLRSRHVHGKVIRWISNMLRNRVATAEIHGHTEVKRVTKGCPQGGILSPILWNLVVDTLLLQFTSxDAAKVQAYADDLCITITGLVASVVGDIAQSALQRLEKWAKTNYLTLTFAPAKTVVVMFTKRRKWSIKPLTLNNELLKLSSEVKYLGITLDSALTWKPHCINRIKTATMSLAQCRCAVSTRWGLNPKSMMWLYCQVVRPMLSYACMVWVRATFSTTLQEKLRKCQRLACLTITSCFRTTPTRALEALLNLPPLHLHLQGNAVYRSHRLKTLGQWEGGDYYTSRNKRHTYICNRISKEIQTLSLPCDRCIPSLHFDHSLRLVIEDRSSFKPPDPPHQSDGIICYTDGSKTVDRTGSGYLITRCTETKQVSVSLGSYASVFQTEILAINMVAKELLYDGTDSKSVDIYSDSQARINSLLVRDTWYFPRCSFRETPEAAKSYVKKRQKLRSILQVITGHGMFASHLQNLKKSESPICPVFDEEDETSFHYVGICPAYANARREHLNLTELSREDLPSITIKAFVAYLRGSARLLKLGRSMQ
>LOA-1_CQ_pol#LINE/LOA 2-3052 Fragment. [Culex quinquefasciatus]
SEVISEKILNWKVSDEESLSDHRQIEFEYNAGDIIKTNYRNPKKTNWILYKKCIDVYEFNSGGEIRTVDQLENASSHLINGILNSYAASCPFQHNSSNREVSWWNDNLAALRKRSRKLFNKAKASGLWDSYRKSLTEYNIEVRKSKRKDWNRSCEKIESTPVVARLQKALSKDHTNGLGNLKKADGSFTQDSSETLEVMMKAHFPDSIVVSSESDQASEGEGPTKDWSENAHLKSCEIFTQSKVEWAISTFKPFKSAGRDGIFPALLQHAKDKISIRLTELFRASISLGYIPKAWREVRVVFIPKAGKKDKTNAKSFRPISLSSLLLKTMEKILDDFIKGTYLKNYPLSKSQFAYQSGKSTITALHSLVTKIEKSLLNKELALCAFLDVEGAFDNASHCSMRSAMESRSFDLCVINWIETMLRNREISADFGGERLVIRPQKGCPQGGVLSPLLWSLVVDKLLKKLAELGFEVVGFADDICIIVRGKLNNFITNRMQSALNFTSKWCRSEGLGINPAKTVIVPFTKRTNTSLQKLSLCGVTIEFQSEVKYLGVTLDKKLTWNPHLENVINKGINAFWVCKNTFGKKWGLRPKMIHWIYTCIVRPRIIYAAVVWWQKTKQTAVQKKLSKLQRLACISITGAMNSTPTEALNALLNLLPLNQFIELQAVKSALLMNRSVKIQEKDMTGHLELLKTFNLNPTLNSIVDWMPTRANYDVPFNVVATSRYIWEQGGPTLRSGSIVFYTDGSKMHNMTGAGVFGPGIKKFISMGLYPTVFQAEIFAIIECIHICLNRNYRYSNICIFSDSLAALNALKGYTCQSKLVWEAIMLLKQLSLKNTVNLYWVPGHCGIDGNEAADCLAREGSGTNLIGPEPFFGIPDCSLKMELKRWETSMVMSNWNAAIACRQSKRFIYPCEKSSRVLLKLDKRNLRIIIGLLTGHCPCRYHLVKMNKLQDSRCRFCNIENETSEHLLCECSALIQRRILFLGKGFLLPKDIWEASPSRVIDFIKRVDPNWDECSF
>LOA-2_CQ_pol#LINE/LOA 1119-4808 [Culex quinquefasciatus]
MNNIRCIQVNLHHAKGASSILSRRFTKEQLGIALVQEPWVNHNKILGLSCQSSRLIYSNTQATPRTAILLSGNIKCTPITEFVQRDIVAAMVTVPTTKGKQEMVVASAYFPGDQDDVPPPEVAALVRYCRAVNKPFLIGCDANAHHTIWGSTDVNDRGERLLEYLTSNNVNVCNKGNEPTFVTVARQEVLDLTLCSAAFADKIKNWHVSEEASLSDHRQIVFDIEASQLKRETFRDPNDTDWNAFRGHLCRSKQDAPSRIRTPEELDTAANTLQRRITAAYQASCPKKVREICRDVPWWSESLSSLRKEARRLFNRAKLTSEWDAYKAALTKYNAELRRAKKTSLANFCEDISSMSEATRLQKALSKDHSNGLGQVRDEQGTLTVTNKETLQVLMSTHFPESTEREEDAASTRTADGVWCRPSRESVHLARRMFNQSSIRWALGTFEPLKAAGPDGILPIFLQKAADTIMAELINLLRASFTLGYIPRSWRKVKVIFIPKAGRSDPTMPKAFRPISLTVTLLKLMEKITDNHIRAEFLKDFPLHKHQYAYQAGKSTETALHALVSRIENALKYKESALCAFLDIQGAFDNTSYTAINEALRSRNVDGTTASWIHAMLTSREISASLGDTSITITAAKGCPQGGVLSPLLWLLVVDSLLRKLTLLGYEVIGYADDVVLIIRGKYDGTLSDRLQSALNCTMSWCEQEGLTINPNKTVIIPFTNRRKHDLRPPTLKGTQLTFSSEVKYLGVILDKKLNWNAHLDYAVKKATTAIWACNKMLGKTWGLKPKLAFWSYTTIARPRVTYASTVWWPKTEQKTCQSKLTKLQRLACLSVTSAMKTTPTAAMEAMLCILPLHLHVKQEAALGALRLQRCNNWVEGDGTGHSRIVKAFDISPLATSVSDCMEVRPNMDIPYEVIETNRQMWSNGGPTLPEGTIRFFTDGSKMGTSTGAGVFGPRTRETISMGKWPTVFQAEVYAIHICARTCIMRNYRHAKIGIFSDSQAALLALKSSKCESKLVWECVASLRELASRHNRVMLFWVPGHCGIEGNEMADELARQGSSNIFVGPEPFLGISKSAVKQEITNWGQLQIASIWGEMRGLRQAKTFITPSPSIARKLLGLNRRELRILAGLLTGHCPARYHLHKIGRWPNNLCRFCLTELESSAHLLCFCGALVSRRLRFFGSHLLTPYDVWHHTHPKKVIQFIDCIAPNWDKPCLQNNPSSSDPMDTSNL
>LOA-3_CQ_gag#LINE/LOA 1-891 Fragment [Culex quinquefasciatus]
IYIESQNDGINTNNWRVIERKIIYEKHVEWLFTVDEASMNHFKDHDFLINYKFGQTTLRRKLPNKENTNENAEXMGNPNDNQRRNDQETAKTPENQGEVCVSGPSGIQKPLVNGKSSNYDHQHQKRSGSFANQNNSQLSNGNMASKYSTQYKKRSGSFVNQNYKQKYNTNKHSNNYPKXQNCSGSSANQDNKQPRSENKRAGTYMNPHGFWKSTTPIDHDQKATGQPRHKKYPQAMLDRKADGELRARNLSRPQKSLDRPEIPSGSGATLDQSLSPPSNITRSSGPSKDRKKDLKQ
>LOA-3_CQ_pol#LINE/LOA 960-4634 [Culex quinquefasciatus]
MSKSIKFIQINLHHARGASGALSQKCLKENVSVALIQEPWAHKGKVLGLDTQNSTIIYNPLNDKPRTAILIKRDLNYVPITEFILKDIVAIKLEIPTAQGKTEAYIASAYFPGDENEVPPPGVAAFIQFCKQNNKQFIIGCDANSHHTVWGSTDINNRGEYLYEYISANNIDLCNKGNQPTFITKTRREVLDLTLCSPFISPRVRKWQVSDEESLSDHRQIEFEYDAGEIITVSYRNPRKTNWELYKNKVKSIQIDKIEDKNHLEKAAKNITDVIISAFNESCPVRKQKSNRDVPWWNDALGKLRKKARRLFKQSKKTKQWEQYRKALTAYNKELRKSQRKSWRNNCEKIEKTPDVAKLQKALSKEHSNGLGSLKKPDGKFTENSAEVLEMMMETHFPGSMIVSSDSGEMEEDTNSGLEWTIGRNTNLPSTIFTRSKVAWAMNSFQPFKSPGLDGIFPALLQYGGNKLLESLTEIFKASFKLGYIPKIWSKTRIVFIPKVGKKDKTAPKSFRPISLTSTMLKIMEKIIDEYIKSNILKTFPLSKAQFAYQQNKSTITALDTLVTKLEKNLEAKEIALTAFLDIEGAFDNASYSSIKKCMEKRGFDPCIIQWIMTMLNNREVFAELGMSTITVKTTRGCPQGGVLSPLLWSLVVDDLLNKLTTEGFEVIGFADDVVILTRGKFAHVLSERMQYALNLTSQWCANQGLSINPAKTILVPFTRKRKFTLKTLSLNGSNLKYSTTAKYLGVILDEKLNWNSHLEQVINKATAALWVSRNTFGKQWGLKPRMIHWIYTAIIRPRITYAALIWWPKTKQLTAQNKLQKLQHLISTSITGASRNTPTKALNAALHILPLHQFVQMEAAKSVLRLRRTNNISEYNSVEHLQILAELEINQGVFEITDWMESKLDLDVPFKVVETNRLEWESGGPTIPPGSIIFYTDGSKMGNKTGAGITGPGLNISIPMGQWTTVFLAEIYAIVECTAICLKRNYRFAKICIFSDSQAALNALKSPTCQSRLVWECRTLLKQLASRNRVHLYWVPGHRGIDGNEIADLLARRGSDGHFIGPEPFCGVSKSTLNMEFTQLEKKLIQLNWVKAHDMRQSKMFIVPSKQKFAQLMNMNKKYLRIYIGLITGHCPSRYHLKKIGLSPIDICRICNCETETSKHLICECSAVSAKRRRIFNKGIISPNDVWLENPGTVVDFILEILPNWGTSQCQPMTVTLNGNVSS
>LOA-4_CQ_pol#LINE/LOA 149-3775 [Culex quinquefasciatus]
MKRFIQVNLHHAKGASAVLCRRFMKNNIDVGLIQEPWINNGKIKGISAQMGKLLYDDSSPNPRAAMLVKNNTKFIPITEFISRDIVAIQMEVPTVRGSTWVCIASAYFPGDTDEAPPADVTMFISYCKKMNKQFIVGCDANAHHTVWGSTDINSRGENLLNYITTNNIDICNNGDCPTFVTATRQEVLDLTFCSEVISERVINWKVSDEISLSDHKQIEFEYNAGEMIVGKYRNPKKTNWDAYKIQLNDYDFNSEDEIRTVEQLEKASSELIIAITDSYTASCPVQQRSSSREVSWWNEKLAVLRKGSRRLFNRAKKTGDWDSYKRALTKYNKEIKRSKRSDWRRSCEKIEETPIVARLQKALSKDHSNGLGNLKKADGSFTKNASETLDLMMKSHFPGSTEVTSGIDQAEGERLAKDWSVLAHNQACEIFTRSKVDWAVSSFKPFKSAGTDGIFPALLQQGKDIINAKLTDIFRASIALGYIPKAWREVRVIFIPKAGKRDKTSPKSFRPISLSSILLKTMEKILDDFVKRTFLTKFPLSNGQFAYQSGKSTITALNCLVSKIEKSLKAKEVALAAFLDIEGAFDNASHSSMRSAMEARGFGSCIIKWIEAMLIEREISADLGGERLVIRPRRGCPQGGVLSPLLWSLVVDDLLKKLASLGFELIGYADDICIIVRGKIGSEICNRMQSALNFISKWCKNEGLGINPSKTVIIPFTRRRSLVLPDLAIRGITIEFSNEVKYLGITLDRKLNWNAHLNNVLNKGINALWVCKKTFGKKWGLRPKMIYWIYTCIVRPRITYASLVWWPKVKEKTAQNKLAKLQRLATISITGAMHSTSSAALNSLLNLLPLHKFVELEAFKSALLMNRSTRIQDKDLTGHLEVLKNFTLNPALNSIVDWMPTKANYDIPFTVDAKSRYEWDNGGPNLRPGSIVFYTDGSRMNNKTGAGVFGPGIKTSVPMGQYPTVFQAEVYAIIECLRICLKRNYRFANICIFSDSLAALNALKGYTCQSRLVWEGINLLKQLSQNNAVNLYWVPGHCGILGNEIADSLARKGSETDFIGPEPFFGVPDCSLKMELKRWELSTINSIWNSTDTSRQAKRFIFPGGKLSRELLKLDKKNLRVITGLLTGHCPCKYHLFNMRKIPNAICRFCNIENETSEHLLCNCGALIQSRISFFGKGVLQPSNINRFRPSRVIDFIKQVDPNWDNTQ
>LOA-5_CQ_pol#LINE/LOA 2106-5786 [Culex quinquefasciatus]
MSSIRCLQVNLHHAKGASSVLSRRFTKEQITIALLQEPWVNNTKILGLPTQNSKLIYCNTQSKPRTAILLRCGIKYTPITEFIQRDIVAITVEVPTATGKQELIIASAYFPGDQDDVPPLETTAFVRYCRDVNKPFLIGCDANAHHTIWSSTDINKRGECLLEYLSSNDVNVCNEGDKPTFINAIRQEVLDLTLCSSSISEKVKNWHVSDEPSLSDHRHIVFNIEARALETEEYRIPAKTDWNAFKEHLQGTRMPINPKIRTPMELETEAENLQGRIIEAFNASCPLKKRRVCRDVPWWSEKLADLRKEARRLFNRAKLSGNWDAHRAALTKYNAELRNAKKESKKRFCESIATMPVATRLQKALSKDHTNGLGQLRTEDGSLTKTNKDTLDVLMSTHFPGSSTKDEAVTNRPADFNVRRSVPVEAIHLARRMFTSTSIKWALHAFEPLKSPGPDGILPIFLQKAGDIILPEMITIFRSSYILGYIPESWCKVKVIFLPKAGKPDKTLPKAFRPISLTSTLLKLMEKITDNYIRAEFLKNSPLHRHQHAYQSGKSTESALHHLVTLVEKSLRHQETVLGAFLDIEGAFDNTSYGSIKTALLNRGIDATTTNWIETMLISREISASLGDTTVVVKAAKGCPQGGVLSPLLWSLVVDTLLQNLSELGYEVIGYADDVTLIIRGKCDATISCRLQSGLNYIIHWCTQEGLSINPNKTVLIPFTRRRKHNISPPVIKGVRLDFSSEVKYLGVFLDRKMNWNSHLDYAVKKAISAIWTCSKLFGKTWGLSPQLALWSYTTIARPRLTYASLVWWPKVNERTAQAKLNKVQRLACLSITSAMKTTPTAAMEALLHILPLHLYVKKEAENGALRQRRHNINYEGDLTGHLRIMKEFDITPLVTTVTDCMEARPNIDTPYDTVETTRRLWCAGGPELPPGTICFYTDGSKIGDLTGAGIFGPGIKLSISMGRWPTVFQAEVYAIYSCAVHCLKKNYRHAKIGIFSDSQAALLALKAARVESKLVWDCIDVLRELSRRNKVSLFWVPGHCGIMGNEFADQLARQGSSAKFVGPEPFLGTSKCAVKYELKKWEDNQISSTWFATQGCRQAKNFITPKPAITNKLIGLKRSELRTVTGLLTGHCPAKYHLKKLGIVDNDICRFCNTELESSAHLLCTCGAIATRRLNSLGSRLLSPYAVWRTHPKKMISFMNCIIPEWDKSTGQPTTNSLPPVNGYE
>LOA-5_CQ_pol#LINE/LOA 436-2109 [Culex quinquefasciatus]
MMNELDPKRSANCSQQLEKTEEKEEVKKGKESAVIEEKIENMECGGVDDGDGDDLEDQLGDLGLDGGSSVSSSVLDSPQRSMEVDAPEDQSAGPGIPPGDNDSLHSSGDTSGSVTPTPVDPAGSNRKRRKPGKPKLTNAQLRRMDYFVRNGHPPKEARELALVPVEQNYLNKRQRSKDEPSPNSSGQGKGPDKKRIRNRGSEGPAPPPAAQAGMISYKEVAEAIHVAVIPLGYPAKTLTTEELKAIRTQLLDLIIKLETPVVRPKYRNCTFKYGYLILACADEATAGWTKEVVNKLQPWEGAELVAVNLADLPKQVLFLGYFQDSLQYTSEDIIRLVQNQNDDFRTEQWKVARRTEHSKTIELLIEMDEKSAEQVAAQHFQLNYTFGKARLRKVTGSTANSDQKDSATLTGKVQTEHVPQPPAQDSQITERTVLSGAQPSCSQPLDRIDVTAKPGTVLQKSESESKQQPLGSSRKTKPRKVPQGASSNKKLQPPGSSKNKQSNLQGVGRGPVTGRIQPLESAIAGASKKHGSTAAGNCRPKPGSLAGPATGSSSSQQ
>LOA-6_CQ_pol#LINE/LOA 1-2361 Fragment [Culex quinquefasciatus]
KVAWAVHSFEPFKSPGLDGIFPALIQHGGKKLIEHLSNIFKASLTLGHIPQIWSKTRVVFIPKAGKKDKTIPKSFRPISLTSTMLKIMEKIVDEYIKSKFLKKRPLSRFQFAYQSNKSTITALHELVTRIGKSLEIKEIALAAFLDIEGAFDNTSFNSIKNCMIKRGFDSCIVQWIMTMLDNRIVSAELGISTLTVKTTRGCPQGGVLSPLLWSLVVDDLLNKLTDDGFEVIGFADDLVILVRGKFDLTISERMQHALNLTSQWCRNEKLNVNAAKTVLVPFTRRRKLTLKTLKINGLDLQYSKHVKFLGVLLDXKLNWNIHLEQVVNKATNALWISRKTFGKHWGLKPKMIQWIYTAIIKPRITYAALVWWPKTKQTTTQKKLEKLQRLVCLSITGAMRSTPTKALNASLHIPPLYQFVQMEAAKSALRLKKIQSKVESIEHLKIISFIKINQNVFMTSDWMESTLNLDEPFKVIETNRNEWESGGPRVLPGSVIFYTDGSKMGNKTGAGITGPGVSVSIPMGQWTTVFLAEIYAILECASICLRRNYRLAKICIFSDSQAALNALKSPTCQSKLVWECRKLLKQLASKNQVHLYWVPGHRGIDGNEKADFLARNGSEGHFIGPEPFCGVSKSVLKMEFVKHEEKTIQSNWTKTQLLRQSREFITPSTQKSKKILNLNKKYLNIYIGLITGHCPSRYHLKKLGLSQIDICRFCDCETETSKHLICDCSALSARRRQILNRPILSPKEIWQENPSKVVDFILEIIPEWGIPQRQPMTATLNGNVSS
>LOA-7_CQ#LINE/LOA 2-2646 via tfasty with LOA_Ele6_pol, 1 frameshift. [Culex quinquefasciatus]
RKNWRFYCEKVEKTPDAAKLQKVLSKDHSNGLGSLKKNDGSFSKSDEETLEIMMETHFPGSILAANEDLGTKSVDYGRDTTMEKSFVPKSIFTRAKVAWAVSCFEPFKSPGRDGIFPALIQKGGGKLIECLTNIFKSSLELGHIPKIWSQTRVVFIPKAGKRDKTAPKSFRPISLTSTMLKVMEKIIDEYIKSKFLHTKPLSRFQFAYQQNKSTVTALNELVSRLGKNMSAKEIALAAFLDIEGAFDNASYKSIKKNMEKRGFEHCITRWVMAMLDSREVFAELGGSSVTVKTTRGCPQGGVLSPLLWSLVVDDLLKKLSELGFEVIGFADDVVILVRGKFEEIITERMQYALNCTFEWCKNEGLNINPKKTVVVPFTRKRKILLKTLTLDGSALEFSKNVKYLGITLDAKLNWNLHLDQAVQKATTALWVSRKTFGMKWGLKPKMISWIYSAIIRPRLTYAALVWWPKTKQKTAQKKLEKLQRLICISITGAMRSTPTNALNAALHLLPLYQYVQMEAGKSALRLRRNENLFKNCKEHLGILKELNIDPHVFMNEDWMEYTLNLDITYKVILTDRQVWESGGPSLPPGAIIFYTDGSKMGNKTGAGITGPGLSISAPMGRWTTVFLAEIYAILECASACLKRNYRYSTICIFSDSQAALNALNSSKCQSRLVWECVILLKKLGNKNRVFLYWVPGHCGVEGNEKADLLARKGSDDLFVGPEPFCGVSKCVLKMEITKWENSMIQQNWIASHSAKQSKLFITPSKQKTSRILGLNKRSLNIYIGLITGHCPSRYHLKKLTRSQTDICRLCDCEVETSRHLLCECGALIAKRIKFFNKGILTPSEIYSENPTSVVDFILEAMPNWGISHPQSVAVTLNGDLSP
>LOA_Ele2_pol#LINE/LOA 402-4058 [Aedes aegypti]
MNRIKIIQVNLHHAKGASAVLSRRFTKENINVGLIQEPWVNNGRVLGCPSSSCRVLYDETQSKPRTAILVNRDTKFVPITEFIRRDIVAIKVEVPTIRGKTEVCIASAYFPGDVEDVPPCSVVHFVNYCKKINAQFIIGCDANAHHTIWSSTDINKRGEDLLNYMSSNNIDICNRGDSPTFVNSIRQEVLDLTICSDLLSEKIVNWHVSDEESLSDHKQIRFDFKAGSEITESYRNPKKTNWDLYRFHLTNKNSYNGEQFTTVSQLENASDGIIDQMVSSYHASCPIQQRSSNRDVPWWNDKLAGLRKKSRRLFNRAKITLDWVEYKKALTEYNRELRHAKRKDWRRVCETINNAPAAARLHKVLSKDHSNGLGCLKKEDGSYTVDSSETLEVMMRTHFPESIPYSDEEQVSDEARHVWSINAYQKACEIFTPSRVEWALSSFQPFKSAGKDDIFPALLQQGKETLCPLLTEIFKASVALSYIPKAWQKVRVVFIPKAGRKDKTTPKAFRPISLSSVLLKTMEKIIDDFIKSTSLIEMPLCKYQFAYQSGKSTITALQSLVNKIEKSLEAKEIAVVAFLDIEGAFDNASYSSMSSAMEARGLDKSVIEWVMTMLKGRTISADLGGAQISIRSTKGCPQGGVLSPLLWSLVVDELLRNLIDQGFEVIGYADDVAILVRGKFDNTISDRLQTALNITLKWCRKEGLNVNPSKTTIVPFTRRKKVKLIQPSLNGVQIQFSEEVKHLGVTLDKKLNWNSHLSKVISKGTNALWVCNKALGKTWGLRPNMVNWIYSAIVRPKISYASLVWWPKTNEVTAQKKLAKLQRLACISMTGAMKSTPSVALDALLNILPLHQFIKLQAAKNALQFIRYNKILDGDLIGHMKIIKEFNLNSDNKTIEDWMTTKTNYDVPFKVVKPSRYTWDSGGPSLRAGSIVFYTDGSKMGDNTGAGVFGPGISKVIAMGRSPTVFQAEIQAIIDCTNVCLKRNYRFAKICIFSDSQAALNALKAFTCRSKLVWECILSLKQLASRNEVTLYWVPGHCGIEGNEIADNLARQGAASSFVGPEPFCGIPECTLRMKLKNWEMSMVESNWNATDTSKQAKRFIKPSLAKARAILNLNKGNLRVITGLMTGHCPSRYHLKNIGKIQSSECRFCQAEDETAEHLLCNCGALLNQRTLTFGKGLLEPLEIWQGSPNRVIDFIKRVVPSWDSVTHQPMSITSQL
>LOA_Ele3_gag#LINE/LOA 344-1921 [Aedes aegypti]
MSANNQTKIKGVDCLPQFEKGDDCLSQSDETETENAFGKLGLTEDELLSSSHENMETDLPLTLPNDPGLHPSVEPMDDEEDGITVTINLSGSQPSITGSNVTSGPIDGKTDQHPTDDANKQKPTGTKKITRSQRKQLKALRQSGLSRPEALSRITGGEAMVSTPSKRTRQDLDKSTNAEEEHKQKRMKQHLNPRKRVGQQETNSSTASTINKPPPEDKKQTSLSYGEITSRRRVGIIPKDFPTTQLSTTQLDVLQEALLLRVEQQRNATMKPKFSNLIYKSGHMVLICKDQETAEWVKEITPALNPLEGVELVAMDEDKIQRPELIRAFFPQSAQYTDDRIKALIESQNDLITNNWRVMQRLTPNNKHVVWVFNVDGPSMEKLIQSKFILNFRFGEIQLRKVKSTTPNSNDNPTGQPTQEKSEEASSSIPQPTPTIQASLSSSDGKDAYLTSLPGPSGVTSMAPNKGSGNVKSVKLTTGDKPAGLGKGKDKNQNLRHPPKSKVDDPQHPKKDGKRPENAERLSND
>LOA_Ele3_pol#LINE/LOA 1854-5576 [Aedes aegypti]
MIRNIQRRTANVRKMRNASAMIKILQVNLHHAQCATDVLCRRFTKEHLSVALIQEPWVNKTRIQGIQLNSCRLVYDDSQLSPRAAILIRNDTKCFPITEFIKRDIVAVRMEVSTARGSTEIIMVSAYFPGDAEDIPPPEMAALVSYSQKHNIPFVIGCDANAHHLVWGSTNTNIRGEHLLQFLSSKNIDICNVGDKPTFENILRQEVLDLTLCSQSISDKIKNWHVSNEISMSDHKHIVFEWEGGLMIQKSFKDPKKTDWETYSAILRSEDYIIEPNIQTIIQLEAASDSIKNKILNAYQESCPIKTVSSNRDVPWWNFNLDKLRKTARKEFNRAKRTSDWSLYRKALTEYNKEMRRAKRKSWVLMCESIEKTPVAARLHKTLSKDHSNGLGSLQRTDGSLTVEPRETLSEMLRVHFPDSIPQTSLNAEGARLDVSVPHGFLSGDSGAKRDAIKVAKEAFTRDRVVRAVRSFEPFKSAGMDGIFPALIQKEEETLIPHMVEIFKASLVLGHIPNDWRQVRVVFIPKAGKKDKTNPKAFRPISLSSVMLKIMEKVLCEYIDSKFMKTMPLSKSQFAYQSGKSTVSALHTLVNKIEKTFNAKEIALIAFLDIEGAFDNASYSSIGSAMLRRNFDPCIATWVHAMLANRQISSELSDSRITVMATRGCPQGGVLSPLLWSLVVDELLDSLERRGFEVVGYADDVVIIVRGKFDSVISSRMQIALNHTLSWCQKEKLGINPSKTTIVPFTKRRKVQLHPLFLNQIQLVYSNEVKYLGITLDAKLNWNTHLQTIINKGLNSLWVCSKTCGKTWGLKPSMIMWIYKTIVRPRITYASLVWWPKTKEATARAKLNKIQRTACIAITGAVRSTPSFALDAILNLPRLDQFIKLDAEKSALRLKRSTVLLSGDLTGHLSILNEFSINPIVEKCSDWMEKVVNYDSPFTVVFPSREEWEGGGPTISPGSIKFYTDGSKMNNLTGSGVYGPKTKISVSLGQWPTVFQAEVYAIKECAQLCLKRNYRHATICIFSDSQAALQSLKAFTCNSKLVWECILALKSLAERNRVKLYWIPGHTGLEGNEIADQLARNGSTNMFIGPEPFLGISNSALNTELNNWLFGQIQSNWNTVSNANQSKRFVTINTTQTQKLIGLNKRDLRTYIGLITGHCPSRYHLYKIGVVQNTNCRFCDETDETSQHLLCSCSAHIHRRFKIFGKHYLQPADIWNASPREVVSFIRLITPDWGNYNTAT
>LOA_Ele4_gag#LINE/LOA 1080-2624 [Aedes aegypti]
MEFTRENDLIEKESLEGVSSCSSSILNTPEREDMYVDDDDYDDGINVTLLSSSVIMESNKDSLQNTVEEKQMEASIATLNSTNNGDEKGCSKLPSTAVATSDKKQKRLNGAGKKRFKYLVAHGHSPNDARILAEXPFRVVQPDPSKRRRNADLSESTSSDTNPPKKLARQVVRGQSSKAKSSVQQRLEQASKGGVSLDPKEAEGNNRLNKPLFSEVVNCTRIGILPEGFPNTEFTTQQLVTIQNAILKKVAEQRKEPIKPKFGNCLFRPGHMIIICKNQDTVNWLKAKISNIKPWENASLIAVEEKDIPRPEILVGFFPRSEQDSNEEILAFIESQNEDLIVDAWRILKRYTVKQHHVELIFTVDAVSMKSLENCKFIIDYKFGVAYIRKRNSKAEVIEDNEEKASKDETGKSRQHFEGARDVEMSEPGPIGVDNTLKSAENNAHCTLTTSTTIVNQCSPHSKEKKNDKSTVVHSISQPDHTKKRNNNLEYRQIESHKQTLKKEADKLPANQNK
>LOA_Ele4_pol#LINE/LOA 2563-6270 [Aedes aegypti]
NPTNKHLKKRRINCLQIKTNNLREMTKRSIKFIQENLHHAKAASAILSKTFIKGKLDVALLQEPWTKNHTILGLQTTGCKLIYDNTQLAPRAAILLNCNVKFTPISEFIGRDIAAISLEVPTAKGKTIVYVASAYFPGDVDEVPPPEVAAFVSHCKKQNKAFIIGCDANAHHTIWSSTGINSRGELLFDYVSQNDIDICNKGNSPTFSNAIREEVLDLTLCSSKLSDNINNWHVSDEISLSDHKQILFEFCAKDILRETFRDPRKTNWELFCSRLKYQKESISDTINSSLELEKAADCLTSSIINAYNESCPAKERSTCKDVPWWNYRLEKLRKNARKQFNRAKLTRNWSLYKEALTNYNKEIRRSKRKNWRYMCEGIESSHEAARLRKVLSKDHNNGLGTLKKDDGSYTADTQESLELMVKTHFPGSIPITNRSRNQDISTSLNGSDRSNIEVADIFTYSKIEWALDSFESFKTPGLDGIFPAHLQKCKETIIPILMTLFKSSFLLGYLPTKWRQVRVVFIPKSNKKDKTVPKSFRPISLTSIFLKIMEKLIDEYIKSNILKNKPLSRAQFAYQTGKSTLSALHSLVSKIEKTFDTKEILLAAFLDVEGAFDNASFTSMKNAMRNRDFPEKMIEWIEEMLSRREISAYLGDSVVKVTAVQGCPQGGVLSPLLWSLIVDDLLVKLKLQGFEIIGFADDIIIIVRGKFDKTVSERMQTALNLTLAWCNNEGLSINPDKTTIVPFTRRRKVCISALKIGDTKLSLSLSAKFVGVILDCKLVWNKHIEQQIEKARNAFWGCKRTFGKKWGLKPKMICWIYSAIVKPIISYASIFWWEKTKQVATQAKLNKLQRLATISITGAIRNTPSNALNAMLNLLPLHDYIQMDAVKSAIRVRRSLDSADSELKGHMTILKHFKISPVYLVNEDYMLKRNFFDHRFWVADVTRQDWDTGGPTFRSGSLIFFTDGSKQDNMVGSGVFGPGVNVSYALGSWPTVFQAEIYAILECADICLKRRYRNANICICSDSKAALNALKSRTYTSRLVWECSKLLQQLSYRNKVNLYWVPGHCGIEGNEKADQLAKQGSSMQFIGPQPFFGMASCALKMQLKSWMKAKIKLNWKNAMDSRQSKRFIEPDAYQTLRLLNLNKHDLSTYTGLLTGHCPSKRYLKIIGKLPEDMCRFCKLESESTEHLLCKCVALYHKRCRYLDKGLLEPNEIQYYHPKQVLHFIRNVVPDWDARQ
>LOA_Ele5_pol#LINE/LOA 689-4354 [Aedes aegypti]
MKFIKFLQVNLHHAKGASSVLSRRFRKEGLDVALIQEPWYNKGKILGIETNKCNLFYDGNQSSPRTAVLINNTLKCYPLTEFIQRDIVAVMVEVPTTRGITEVVIASAYFPGDALEVPPPEIVSFVNHCRKINKSFIIGCDANAHHTVWGSTDINSRGEYLLDYLCSSNIDICNKGNEPTFSNAIRQEVLDLTLCNAAIYDKISNWHVSEETSLSDHKHIMFEWSGGDYPRIAFRNPRKTNWEQYAQCLNSNSFTKDENIDSIQKLESFSQEVKGKIIHSFHTNCPMKQSSSSRDVPWWNTKLERLRKLSRKLFNKAKQTSDWAQYRRALTEYNREIRKSKRRSWIQTCENISATPVVARLQKALAKDHTFKLGSLKREDGVSTKTPDETLNLIMETHFPGSISCVDSNSSEPIEYERCSVEALSSDRTVISEPDLADEIFTNARVKHAIRSFQPYKSAGVDGIFPALIQNGEAVLISPLIEMFKASLRLNYVPSDWRAVKVIFIPKIGKRDKMHPKSYRPISLSSILLKTMEKVLYDYINSTYMLKCPLSDSQFAYQSGKSTVTALHTLVTKVEKTLSVKEIALCSFLDIEGAFDNASYSSMTRAMKKRNFNKNIINWINNMLAKREITSELGSSSITVRATKGCPQGGVLSPLLWSLVVDDLLKSLEEKGFEVVGFADDIVIIVRGKFDNIISERMQLALNLTNSWCIQEGLNINPSKVVIVPFTKKRKFILKALKLGGVQMHLSEQVKYLGVILDSKLNWNAHIEYVTNKATSSFWACSKIFGRRWGLKPKMIMWIYLAIIRPKVTYASLVWWPKTKEATTQAKLSKVQRLVSIAITGAMQSTPSKALDAILHLLPLYEFVQLEAEKSFLRLNRLNKFKSGDLVGHLNISQHIHCGPVMTMHEDWMKTVDNSDIPYNVCDTTRTDWDVGGPNVRQGSIKFFTDGSKIGTQTGAGIYGPGTNVSVAMGSYPTVFQAEIFAILECANICLKRKYRHANICIFSDSQAALKALGAYKCSSRLVWECILSLRKVCQENSVCLYWVPGHNGIVGNEKADELAKQGSNTQFIGPEPFCGISYCALNMELKSWERQRVMTNWMVTTRCNQSKRFLVPNETITKRLLELNKRVLCIYTGLLTGHCPSRYHLKNIGQVQNDICRFCNMERETSEHLLCSCSALYKRRSKFLNGGYLPPSEIWTGNPSKVVGFINSILPDWEKTRQSA
>LOA_Ele6_gag#LINE/LOA 3-1424 Fragment [Aedes aegypti]
FKKLLLSGHGREEALSMVLVPPKESTPKRPRNINNSSNSDSKPIPKKQKGQSIHISVNSRMENIRQDQPTALENQQSTYSEVAKWVRVGILPKNYPQIQLTDEQLYSLQEAILLKVTLQRRESFKPKFTNCWQRTGHLVINCQDRETSDWLNSVVPTLIPWKGAELTVVNADDIPRLDVMVGFFPQSVNDENDTIRVFIESQNDGLSTDRWKIIQRNILYENHVEWFFTVDEASMQHFKTCNFLINYKFGQTKLRKKGMYKPGVDGMVISRDEPKELEPVSSVDPGTEQSLSVPVTSGTDGKVPEAKSSKNHHQSTQSTGLPKNENSQGKFDDRIYSGPSKNSNHFGLQVDVQCPGLAKDQQCSTILMDQKSSERSKDRNTFGLPKDQSGYQKDQNYSGRLKDQNAAGPSKDRNCSGSQRDRNTSGLPMDRNTSGLPKARSRSGHIKDRNSSEPSKEQMPSGPEKDQHSRKYK
>LOA_Ele6_pol#LINE/LOA 1477-5163 [Aedes aegypti]
MNTDIKFIQINLHHAKGATGILCRRFLKENFSVAFIQEPWVNKNRVLGIAGQIGKLVYDEGNSNPRTAILIKGGIKFVPITQFIAKDIVVIRMEIPTTRGKTEAYVVSAYFPGDVEAVPPPELTAFINYCKTNNKHFIIGCDANSHHTIWGSTNINKRGEDLFEYISSNNIDLCNKGNQPTFITKAREEVLDITMCSPLFSTRIKNWHVSDEQSLSDHKHIVFQYNAGEIVKIAYKNPRNTNWERYASTMQSECLLLNTTIQSTMQLDRVAKNITEQIIQAYNVNCPVKEEISNREVPWWNKTLNNLRKKSRKLFNKAKISGQWDQYKKALTMYNKEIRKSKRRTWRSYCENIEKTPDIAKLQKVLSKDHSNGLGNLKKTNGDFTVNSQETLEMLMETHFPGSNLVVSDNEESINVNDNYGPTGTIRYNSLIPDTIFTKSKVEWAMNSFEPFKSPGMDGIFPALLQKGGEILLDSITNIFKASLMLGHVPKIWTQVRVVFIPKVGKRDKTNPKSFRPISLTSTMLKIMEKIIDEYIKTEYLQKIPLNRYQYAYQTNKSTVTALHNLVTKIESTLDRKEIALVAFLDVEGAFDNATFSSIKKSMENRHFDPGIIAWIMEMLKNREVSAELGVSSITIKTTKGCPQGGVLSPLLWSLVVDDILNKLTEQGFEVIGFADDVAIIVRGKFEHTITDLMQSALNCISRWCQNEGLNINPSKTVLVPFTRRRKVTFKNITIEGCIVQYASSVKYLGVILDDKLNWNLHLEQVISKATIALWVSKNTFGKKWGLKPKMIHWIYTVIVRPRVVYAALVWWPKTKQSTAQKKLEKLQRLACMAMTGAMRSTPSKALEAVLYKLPLHQHVQMEAEKNALRLRRTNIFLEGNLSGHLSILKDFQINPLVVMNEDWMERTLNLDIPYKVVETDRQMWESGGPSISPGSIMFYTDGSKMSDNTGAGITGPGVNVSIPMGRWTTVFLAEIYAILECASICLRRKYRHARICVFSDSQAALNALKSYTCQSKLVWECIQVLKQLAMNNQVSLYWVPGHCGIEKNEKADFLARRGSNTQFLGPEPFCGVSKCVIQMEIKKWERNMIQSNWIGTNTSRQSKLFITPNKQITEKLLNLNKKSFCIVIGLFTGHCPARYHLKKMGRSPTDICRFCDCEIETSQHLLCECSALFAQRRQYFNKGILSPFEIWQGNPNKVVEFILRIIPDWGTSHYQSTAVTLNSNLSS
>LOA_Ele7_gag#LINE/LOA 318-1970 [Aedes aegypti]
MSDIGEKQLMEIDVEDVLXSSSVDDVPSCSSSILDNPVGDDGYEDDGDFEDGINVTILSSTANIVHDTSAVDKTVLGSSAGKQPVLPGDQQRTKLNGAARKRYKRLVAEGIDPEEAYTLSRVPLQTPNSEKRSRNADLSGSTSSGENPRKKQNVRPLLEPRTGSNHQSLGKFSVQGRLQINSNVCSGRNETIQSQNKASYSEVVNYVRVGIVPKDYPNVELTSAQLLATRKAILSKVAQQRKEKIKPKFGQCLLRTGHLILVCKNQETAGWLKSIASTISVVEDVELTALDEKKIPRPEIIIGFFPVSAEDSTDDILELLESQNEGLNTDEWRIKERNIINQLHVELIFTVDGASLDAIKKCEFTLDYKFGTAPLRRKIPPKIKMPNQGVNNDLVSPSDNLNNRRVLEEQQTTLIGSGVIRQTATPIENLKTTGDSSSASNREIQNMPGPSGIRDASFKGARPKQILEGTSSGLVRKNDTAPQSPGSNGTMESKRNVKKTKILPVKDKNPLHKNKYIAKYMKNLGDRVTNTEGGKPPRESDTTMKHENGQH
>LOA_Ele7_pol#LINE/LOA 1954-5749 via tfasty with Baggins1_pol, 1 frameshift. [Aedes aegypti]
MKMANINVNKSCNIQSSNQNNHSSITNTNTNNINRQNRFIKFIQINLHHAKGATAVLQKKFVHNKMDIALIQEPWAYDRKVLGIPTSAGQLIYDENQIVPRAAILISNRMKFLPITQFISKDIAVVLMEVPTTRGIAEMYVASAYFPGDLEAIPPPDVVNFVSYCKKNNKPFILGCDANAHHIVWSSSDINYRGEYLLEYIITNNIDICNQGCEPTFITSTRKEVLDLTLCSTNISENVKNWHVSNETSLSDHRHILFQYQTNEIFTNEFRNPRKTNWDLYYQNILNESHISDEKFNSITELEKASVQVSNLMQHAFQASCPITVRSTSRDVTWWNDNLEALRKKTRKLFNRAKRTMKWENYKIALTDYNKEIRRSKRMDWRRTCESIENTPVVARLQKVLSKDHVNGLGTVRKSNDCLTSNGLETLEVMMQTHFPCSTVINYDENATEDNTSNELSRMTSLGEIHDSKDNLDLLPILNMAAQKADEIFTKNKVEWAINSFDPFKSPGKDGIYPAFLQKSNGVLTSALSNMFKASLVFGYIPKSWRQVRVVFIPKANKKDKTSPKSFRPISLSSIMLKIMEKLIDHYIKTAYLKQNPISIHQFAYQSGKSTTTALHALVSKIEKTFEAKEVLLATFLDIEGAFDNASHKSMARAMLKHGFDICIVKWISEMLSKREITADLGSVSISVKAVKGCPQGGVLSPLLWSLVVDELLTNLESQGFEIIGFADDIVIIVRGKYDSVITNRMQRALDYTIQWCITEGLDINPQKTHIIPFTKRRKLIISGLHMKGTLMTLSTEVKYLGIILDCKLNWNSHLKQIIDKATNALWLSKRTFGNKWGLRPIMIHWIYTTIIRPRITYASLVWWTKTKEKCAIQKLAKLQRLATMCTTGAMRSAPTKALDAILNLLPLHQFIQLEAEKSALRFQQWKPLLSGDIKGHLSILNDIKINPLVTVNTDWMEIQFNFNRMFNVVESDRTVWTMGGPQIRSGSIIFYTDGSKQNGQVGAGVTGPGVNLSVSMGRWPTVFQAEIQAILECASICLKRKYKHSNICIFSDSQAALSALKSYTCTSKLVWECFLLLQQLCINNTVNLYWVPGHCGIDGNEKADELARIGSTEKFLGPEPFCGVSTCSIKMELRNWKQSMVITNWNKTAVARQSKQFITPHASNTQKLLFLSKKDLCTYTGLITGHCSAKYHLRLMGKVEDDICRFCQESCETSEHLLCSCDALFQRRVKFFDKGDIQPFEIWSLPPGKVVRFIRHIIPNWDNT
>LOA_gag1#LINE/LOA 288-1813 via tfasty with Gypsy7_Dpse_gag, 1 frameshift and 1 stopcodon. [Drosophila silvestris]
MAVQRSNEDIAASINADMVLCNICRAPVLINTEIAETPCKHKFHRSTxLRTNETCPSCRTPCTLSQLIDVKSQSSKGPFQVPRTVRGGHRVGATHRNIPNIKSNNSGAQAYRPNTNFNVGNRRDSFNASLDPSIPSEQRIQQLISNSLDTFRASMVVAVSDEIILAIRNLNISNNQQEARIESGVEQNIRTAVDNRSTDSIERPDKVSSIISSWHVQFCGSFNEISVEDFIYRINRLTDECLNGNWNLLYQFAIILFCGPALQFYWRFQRTNSRSNWFQLSDALRERYREQRPDEKIKDSLRSRKQRSGERFVQFLDAIQCIADTLREPMTDRELVANIKRNVKVEMRLELLHVASPNIATLRTECHKHEQFCLSMSSKPVPRPTNTSHFLNEVIHEEESIDTSHIYSTESTEINAIRSVDRIKCWNCNEVGHRYQDCIKTRRRPGVFCYGCGRFDTTHRKTCNRMSTEHNQLISTYSLGSTICTPPIPNNNTSLSKNLRCKQLHGNLN
>LOA_gag2#LINE/LOA 1786-4116  LOA seems to encode two gag proteins, or pos 288-4100 encodes one gag, with errors. In-frame with pol. [Drosophila silvestris]
MQTVAWQLELILFKKKIIASVERKYSICKSIRFPKVRIDEFWRNKRSPKNITFISTIRNRNDSASIFTNLMLFGQSYLALLDSGANKSVIGGQLAIRLLAADLKLKKLKGNFRTADGQHENVLSALLIPLEYDLLQKEFEFMILPSITQDIICGMDFWKSFGINISTTTVISELDYSDQTCNNRCLVLQRGPGLKNVWDGSERAELRHQAGRGLRIGNGLPAGRLAANNTRFVVNKQSRTNSGRIMSIVPTRRLYCRLPKCSLPQPPLSPHIFTYPILSPHLTPGWTKASFEPCRESAWLAARIKTSQVVNPSILHTVLLQQLLGDAAGTRNFGCEAWGRWLVHPDHRAQHRTPRGNPLSAQRGRESSCHLGVNSVDWMTRTGGISAVQGSNGTSNQELTPDEALKKAKEPREEIAAHAPRPKRRTSNLTPPVATPKRICPEVVGATRGSATAKVLNKNGAGNLDLRPSTSRAAATKPSSPTPTEPRLSYADMAKNVRVAVLPVDFPRVMLSHGDLSVLEEAIIDEVIASGGDIAASFTGIHFRVGFLLIECSGEASAAWLRTATSRLKSWKGVPLKCKVGDDIPSPHCITLFCPRSVGRSTESLLVLLRNQNRIETDTWKVISRRNEGGGALLVIAIDELSKCILWRRGTMSSPLRTIPVSGLKKKTGAKPQPAPTGKEDVSVGNITTSDTPASEQSSPTAQPADPSEDLAEDEELADVTLCQEGILGEEDIPMSSQELAEELQDAAVADVVMTNSGDGCSSRPHSPCQLEPSQKY
>LOA_pol#LINE/LOA 4117-7716 In frame with gag2. [Drosophila silvestris]
MTKGINTGLAQVNIHRAKAASAVLARMFTNKHLGLALVQEPWVNNGIKGLFTADSKVIWDRRDPAPRACIMVRKSINFNILSEFLTRDCVPILVYTKGSAVSMVIVSAYFAGDAPCPPPEVERLVEYCRKEKMPVLIGCDASAHHTIWGSSDIHLRGECLTDFIFKYNLELENVGSAPSFVTRIREEVLDITLISRSLKPHLREWHVSQEESMSDHRTILFNLKLNTDSSTPGRNPRRTNWEGYKSTLGLNLANGLSGTPRNPIELDRATDDLNKCIISAFEENCPVGKRFMEKDAPWWNDSLERLRVTTRRLFNKAKRDGIWEQYRECLTSYNKEIRKAKRKNYRDFCESIVSTSEGARLHRALAKRTPDANLALKRGDNSFTISNKQRLELLFETHFPGCTPLQEEAIVGISRYRPSTDDWACAKSTVTKEKLNWAIGTFQPYKSPGMDGISPAFLQTGQDILLSRIRKALVSSLALGHIPSACRRARVVFIPKAGKKDITDPKSFRPISLTSFLLKTLEKMVDYKIRSTLLKQRPLHPAQHAYRVGRSTDTALYQLQRTLSAAIDYKEVALCAFLDIEGAFDNTSHDAIKDTLSRRGLDPTTSRWILALLRSRQVTASVHDSTVTVLTTKGCPQGGVLSPLLWSLLVDELLNRLTNSGIQCQGYADDIVIMARGKFEESLCDMVQSGLRITYDWCKEVGLNLNPTKTVIVPFTRRHKLQRMRQIWLSGTPLERSREVKYLGVIFDSKLNFGTHVQNAMLKCSRALYTCRSIAGKSWGTSPKIVRWLYLMVVRPMLTYGVIAWGDRARLITVKKQLQKLQRMACVCMTGVMCTCPTMALEALMELTPLHHIIRLKQKATLLRMSAEGVGCPTLSNELPLLLQPRDEMKVEYIFERNFTVYMSSKRNWTTLEEVHPMKPHTIRWYTADHSPTRAQVSVWWALGCHTTNPYGTHTSIFQAEVCALGKCAILTLKRNYRNTDTSILSDSQAALNAITGTKITSKIVQEARSKLNLLGTHNRLACDGSRATGIYRVTRRLISRREWGQKGPLIGPEPYCGIGRHTIRLVLRNEEKQVRQQSWSEAVGLRQARCLLGGYNLKRFKQVITMGKNNLRILTGLMTGHCRLRSHLTRLGIYSSDLCRFCEIEEESSVHILAECVALARRRCSILGMHVLNFRDIEDLNPTKILTFVREVGLMEEL
>Lian_Aa1_pol#LINE/LOA 641-4210 Previously called Lian_Aedes. Corresonds to gi|2290213|gb|AAB65093.1| Lian-Aa1 retrotransposon protein [Aedes aegypti]
MQNGAAQVALVQEPYFRRGNFYLGNLVDPVFATFSKLEMANSRSMPRACVLVNKAIVATLISELTTRDVCAVTIDVSVGDLNRKYVYCSVYLPHDEPSPTDDFKRVVVHCVTKGLPLIVGSDANAHHIIWGSSDINLRGSSLMEYLSSTDLGLLNIGNRPTFMVSNREEVLDITLCSNRISHELTNWHVSDEESLSDHRYIFFEHSNVTAQTLRFRNPRSTNWELYIELVATKFHGYSPSIENPSDLDDAVDTTTSYIMEAFEEACPLRSVKTTRGTPWWNSDLTRLRKQCRRSWNRRRSAGSESFKSARKAYKKALRSAERSGWKNLCTNVSSLSEVSRLNKILAKSKDFQVNEIRLPNGDFTSSDEEVLECLFNTHFPGCVDIASTDEPNVFSCSYESLASARSIVTTESIQWALNSFAPFKSPGADGIYPVLLQKGFEFIKHVLKKLLVSSFATGYIPKSWRDITVKFIPKGGRASYEEAKSFRPISLTSFLLKCLERIIDHHIRDVYLANMPLHVNQHAYQSGKSTVTLLHKVVYDIEKAFAQKQSCLGVFLDIEGAFDNVSFDAILEAARNHGLPTMITNWIHQMLKNRHLFSTLRQAAIRKLSVCGCPQGGVLSPLLWNLVADTLLRQLNNCGFPTYGFADDYLALIVGMCISTLFDLMQSALQVVESWCRQYGLSVNPNKTSIVLFTERRNRDGIRPLRLFGTEINVTDQVKYVGVILDSKLSWTPHIDFRVKKACMAFGQCRRTFGKTWGLKPKYIKWIYTTVVRPILAYGCLVWWQKGEVRTIQSKLGHLQRMCLMAMSGAFSTTPTAALEALFDVAPLHIYLKQEALSCSYRLWVLDLLEKNPVNRRSTHTSLFPLLVNWDKIVLAPSDLTIACNFPYRTFTTQFPSREEWTSGYLERSISNNIVCYTDGSLLEGRAGAGVYSRELRLNQFYSLGRNCTVFQAEIFALMCGVQSALQQRVMGKVIYFCSDSQAAIKALASANSRSKLVIACRTQIEELNSVNSVNLVWVPGHSSIAGNELADELARDGASHDFIGPEPAIPISKCWVKLQINSWAATQHKQYWNSLESCRQTKLYITEPSPKVAKYLTNLSKQNCSLLVRALTGHCRLNYHMANIQRADSFVCDSCDSDYGTSYHLICNCPVFAQMRFQLLGKHLLSETEYRSLNLQDILLFLTRCGNEL
>TRIM_pol#LINE/LOA 2-2952 via tfasty with Bilbo_pol, 3 frameshifts. (fragment) [Drosophila fruit fly genus]
FSDHRYVETVFSFSVPKPVRFRNIRRTNWTRYSDYLCRVLPEPPSEEEFSTEATTRLLKIFTDACNKALDKACLSGKNRGRRKPEWWNPKLGELRKASRRLFNKAKAENVEQNWAEYKASLSTYNKELRKAKRASWRKFCSEIESNSEASRLRRVLSKTTPTLGYLKNTDQSWTTSSEESLNLLLNTHFPGCDENRPNYLAPPSVASNAILRLLSQENISWAIRSFKPYKSAGPDGIFPAQLIHAGYKAINWLKIIYEGIFPDTWLQTKVVFIPKAGKPSHTAPKDFRPISLSSFLLKAMELLLGLHLTACIPSSLISDSQHAYRKGRSTETALHSITSIIEASLNFKEYTLVAFLDIKGAFNNILPTAITGALTDLGVDSRTVSLIDQMLQCRTVEASLGTLTCTRFVSRGTPQGGVLSPLLWNVAVNTLLREIEGGGCRVVAYADDVAIAFSGKFPQTLCECITSTLTKMSEWADKCGLGVNPSKTELVLFTRKYKVPVLIPPRLCGETLVFSNNAKYLGLILDRKLDWKLSIEDRVKKATVALYTCRKAIGLKWGMTPYIVRWLYTAIIRPIMLYGVVVWWPALDRRTCLNKLSRVQRMAELCITGGLRTTPGEALDTVLDLLPVDLMGKKVATLAALRMREARLWKASAVGHSGILMRLPQLPERTDYCIPSDHLSTPFQVSIPSREDWEMGEPGPANAVHFYTDGSKLDGRVGGGVYCSELEISHCFRLPDHCSVFQAEIEAIKEAISIVSKLRLDTHLVCVFSDSQAAIKALGSISSNSATVKDCRRSLHEIAEQLDLFLIWVPGHRDIEGNDAADELARQGTTIPLLSEREQVAMPLATCRLLTHELFEQNANRRWQQTVSCKVSRLICSYRSKKRSAELYRLSRAQCFAVTRAITGHWQIGTHASRLSIPHNDFCRSCRDEEEEESVLHFFCHCPALGNRRLRILGAAFLADISGLSEIKPGTLSKYIQATGWDCP
>Odin-3_p2#LINE/Odin 6769-7617 [Oikopleura dioica]
MIIKLREKEIKLVNFQELSSIEKLQNANHTLLPSGIIELAFPGLALTNKISARADLTALLEKFENNKISVPIRSVALPGEPMLETFQKWFNIQNSSFNPFATAIFWAHLINLNHVEXSSPIPNLTGGLALXINFLPRCITAVKNPDPFLTGHIQRTFTGAPRTLPLFNLAHCHPAFDLSNCGLHVNPESPELLDGWMXVPALLGQLKSHWLDLVPSIPNFKTGIPTQTRDDLIKHFTELHLVKGDNIIATRAALFCISKALQHNNIEISNPIWQRIAHLSPTI
>Odin-3_p3#LINE/Odin 7804-9351 [Oikopleura dioica]
MSTTSSGIFTDLHAKRAPPYTSEEAKQYRFNLYIDNVCINIIQDTPEDCLSELTCCGILVTNALNRHGIEITDDTVVLFKMISCDALLKAILNKVPHEYIDFFASLNLLTNEVQTFSTASCLAGYLQTITEKIVPSGIIALGNNQNSIYRISGELAFIRIRGELHVTALKQWSENNPIFSPXWDVNIKRILAPSAINAEALTNWIASRLYIKRKGWDIKYAFAIHLASSSPGQRYPTPSGKVPILTKDAHLSKAELTQKINSPPTVRTTTIKPAELEVLNLANAXLVSKFSNPALLHPLRVFALSKSKKVLDLALRLYRSKMADVQDFLTIKACKAHNGLMLSSSICMASSPDSNCSSRISEILNEASTLPLERSEHLYKNEIHRIVRDITPNGSLTTLLSRLVKSINGHNASPTWADLLVEITQLDKKDAAVVKNYCSEKKLLPPDXKGDPNSTLVLLTDSDEDDRIAERASSTLMPRSVPQQEDLDFSPPSLSPINSPEQDSPPFWTKSTASED
>Odin-3_pol#LINE/Odin 885-6587 Virtually identical to Odin-2. [Oikopleura dioica]
MESQXSXSSRAITDAFDKCNVRSPARYXXNQSLSHHQGQXXXLTXLPXTPXXXQNTXGTXPXPXANXXTLNSAPXXQSXCSLISFNXDDSIISLHNXNVLTSTLLPXSVTEQTVTNAHSSIKKKGKRSLDQANLASQETPSQDRGPKSQRLMQTTLAFRPKSSPIRNPNNRTPKPVNLFPNRASTPPLHLFAGIIEKSPELASNPLLQSIASTSLEDALERSPARRSLRTAKKSSQSNGGTSAESTSSSVNDSETTSLNGTLGLSETDNSQNTFIGPPIAGGNIFLNELSKYNTDEFTGQRLQPNFAQLKEFVDSQLVKSKARVMAGHAKIGNNYFLPQSAFTEVASLMGGSVTLNEYIDSGNHSAIPNDSSEIADLNNFAKNQMECLTRDFHKIGIEPREGREIWLTLIGNHCQKIITRLNAIIRDYHSMSLTQKKELYILEPSDFAAIKHIRERLIELLDIFKNGLKLVEHFANGGQWLGRLIPLPHSKKIFKLMTTKIVHEQHRAQQSPIKTLLNLNTFHLDRMGIAYCNKNYSRIVLGIYANGGLQIKRQITYMIAKKGNENLRNKTQVKIVKKSLENLLIRNSKVNPKLVDLNNLDKIKYNKEAWNIALKFMFLFNNNILTYDNITKDNYPLHIFQFHSSLRKPNDSTNCRPIGXNETSDNCDEGNLDSQNANTKVNDRXNAAEIKRGIIPRTRITNTQIPSPLTFLSNLIPLTLLANIRADWEDYNADLAKTRAAKNFLATNSCDKDILKTINSATIVNPSESDITHLEKTCEIYNKEALNNYKPLRICNINPGKAKTNGETFRMIVRELPKIDLFCLNEIRLPHSTMTNSAIWPEGYSIMTHDRIEAVNPAMLNTDESLCYSAIMIKNESFSECELERHSVGPLTAIEITNDKRQSLVVASIYRFCENDNKAKCFYNILFGSTPEIFCEWIEQILKLTRVNKAQVILAGDWNCDFMRKRDNDQVVKRLSFMLKHLTNLSHSPTFFRGTKTASIIDHIFVSHPANTNYKNLRLNISLKFDGHTGQSIISNFNTNYRAFKLIQITKNGSDAIIKKTAIKYFNRIQNSLRMLDDPKKRLESSIKWLNRIYNETKVVVAKICKNKNAFAVKKGKDRVDYENLLRFLKESPKYAPRSGEVNRPIDRAKIGLSILILKLKKRDQRLAHKKLSHRAENDRNVIWDIFKLEIQQTQAWNPEQECSPDELADMVDSLQKVTLSANENFTPLVDHPFPFEKLSKISYSINGESQFPSILAMFDLAKQHTKGNSGINKSFLSILPISVMDSLIVSPIQNAIDTGTYPLSLRTSRITILPKKSRGIRPIAINEVLATIIEKIVAWNLTNYLEATNSIPPMQAGFRSTLNCANSIADIIRNSETNRLKGNTTATIFLDLKNAFGSIKHANLDKTFALYFNGPALSIVSQSLFRNYRVNGNGFFSTTRAGLRAGVPQGGTISPLCFILFVSQIQNIIKGKEGVKINLFADDMGVQVTAKNYAELVTKTNDIIGILETALQNMGLMLVGSKSHILITGKSKSKNFGLDLEFEIDGTIIKPEKQAKYLGTTLSVSNGQLNLDREADIMICKFRNIVDKLNCIKSTLTLTTNGDLLRACAYGTFLHNTSTTPYFSNKTLSQLQKIYDKGICIASNGKILSSDSEVIRLADCPNRAYLPRLDYERIIKNLNRAGHPTLSKVKGLAACNFMRTLLRELKSTSLAEFTSSCLSLRITHSSERLSNFCPSLFQHESFLKKMGTLDTLKIKHCFSSELSTNQVIARELLINLLQEELITFTIESPPNIPKAASHKLIWPLSFRKYINSLPVNIRNLILTSPNKEALKNKFSTIHNHVENSYYCVDCISFDSTLDNTQAREDDLAAFIHEHQSKLNELDLDCSQPIAELVMDVIRMA
>Bridge1_FR_gag#LINE/Penelope 684-2497 via tfasty with Neptune1_Ren_gag, 1 frameshift. [Takifugu]
MEPGWTEVRYGRGRQRAHRQQQGFQGYGRSVGRKDRAFPVSYGRQGTFPYPIRPVLPPRIAHYPVPQQRTYAAVVRQGYPQASQRRVFPRASRPGVQYQYQYQPADPQFGKLVRKLHSVIKTVHHLQNVAPKEGKPEPRMISRMVDILTDMIKPAAPTQRTKDLISGNAKNWGYNTYLILMEHYEANLAEYLDEVSGLLTPEWRAAFEVAVRWARRNLPRITRDEIDHAQALVTARVDTMVPAVVQVPQQTTVSTDTRDLACGHSPRQTVVTAATQCCGQCIAQVGSRDEIEGRAETPLQPTTKRAVVTMTDSTGQHSDWHFDPPYVEPPRELRVGRKCLRKTKHFVPNEDDLLQDDPEDLMGRGTPVGDATLLDLSGLFVESQNEEAEVGTARHEMVVQAPRGPSLFEEDSFEDSFDHFVEAGPPMFQVLRHPNTQRKLIDWDLVVRKKWLIIGDSNLCSFPDFAIKNLQIDSYPGAHFRHAQALIEKTEPPLDLVVEKIVLSFGINSRGNSSKGTTVKNVQAALRVAKKKFPYAEMWVPLLNFSNNLPEEERENLQLLNHHLERNMPFIPLLPGRFFRTGTDNVHWTVETGRAMFHHWMEFLN
>Bridge1_FR_pol#LINE/Penelope 2455-4206 [Takifugu rubripes]
NRKGYVSPLDGVFKLHHPLSLEQRGIDGPQSSHSQEVVVLAKNFKLFRPQQDLLSKGLSFIPSWNVGRDQKVQLQLDIQNYHRKIKLATYYRDSTKKLYSKFIGTSDWTPPLGELPPVIGELIRKDLETFKNHFISVKENLNISLPEIKALQELQHKKNIVIKPADKGSAIVILDREQYIFEVERQLNDTEYYKKLEKPIYLDTIPMVATILDTLKRKKFICEKQRKYLVGDVEPRERRFYILPKIHKEPEKWTIPYELPPGRPIVSDCGSETYFTAEFLDFYLNPLSTKHPAFVRDTYHFIEIIKTLKIPADSYFFSMDVDSLYTNIPIESGINCIRNIFEKYPDPKRPDEELLQLLEINLSRNDFIFNGKYYLQTKGTAMGKRFAPAYANIFMANWEEEALLKCKHKPAHYLRYLDDVWGIWTGSELQFREFVETLNSHDPSIKLKTEINKHSINFLDTTVFKGPDFLKTAKLDIKVYFKSTDTHALLHKTSFHPKHTFKGIVKSQIIRFKRICTRDEEFKEAVNVLFKALRKRGYSKPFLKHCFKSVQKRKNGGDRGDLIPLITTYSSVNKSLNIGLKTI
>Bridge1_TN_pol#LINE/Penelope 1-2048 [Tetraodon nigroviridis]
LTKTEKDLLSRGLNSAVTPEELPVVDLITATETAIRNNKLPETEAEQIRLKVSAALANAKAPASNITAQEKRALASLAKDKDITILPADKGRCTVVLNTTDYDSKILSLLGDSNTYEKLKRDPTSTYKKKVIDLLQKLEKEQAIDKPQYYRLYPGEATPCFYGLPKIHKEGTPLRPIVSSINSVTYNISKFLASILAPMVGNTPHHIKNSQDFAEKVSNLQLESGETMVSFDVTSLFTCIPTSEATEAIHKRLLLDKNLQERTTLSPAQICTMLDLCLNTTYFQFRESFYRQKHGCAMGSPVSPIVANLYMEEVEKRALLSFTGAAPSRWFRYVDDTWVKIQTKEVEKFTTHLNQTDTFVKFTREDVKGDSLAFLDCEIRIEEDRNLSIEIYRKPTHTDQYLLFDSHHPLEHKLGVIKTLQHRATKVPTTSHGRKKEQDHLTTALKTCGYPDWAFTKTRKKRDPSNEEEKDKRHSVSIPYMAGVSEKFRRILQKHNIPVQFKPSNTLRQKLVHPKDKTPRHKQSNVVYAVQCQQECRDLYIGETKQPLHKRMAQHRRATTSGQDSAVHLHLKESGHSFEDNQVRVLAREDRWFERGVKEAIHVKMEKPSLNRGGGLRHHLSPTYNAVLHSFHKQKPKHTHSFTRAGVTSPGDPAVKRKTSQTETRSTTLPTTLPTTPETSIQTTGILMQRLSVDISMPMVQKGYIFKLCTEPDQN
>Bridge2_FR_pol#LINE/Penelope 1-1395 [Takifugu rubripes]
TQTTSRRDMVSYDVTSLFTCIPTASAIDTIHKHLLLDKNLPERTTLTPAQICTMLDLCLNTTYFQYREGFYRQKHGCAMGSPVSPIVANLYMEKVEXQALTSFTGTAPSHWFRYVDDTWVKIRTQELEAFSNHLNKTDEHVKFTREDVKGNSLAFLDCAVKITEDRNLTIEVYRKPTHTDQYLQFDSHHPLEHKLGVIRTLQHRAREIPTTSQGRKKEQDHIKTALKTCGYPDWAFTKTSRKRDPSKGEEERNKRRSVSIPYLSGVSEKFRRILQKHDIPVQFKPSNTLRQRLVHPKDKTPRXKQSNVVYAVQCQEECKELYIGETKQPLHRRMAQHRRATSSGQDSAVHLHLKESGHSFEDSQVRVLAREDRWFERGVKEAIHVKLEKPSLNRGGGLRHFLSPTYNAVLHSFQQQTKRSHHSRRPGDSPPCXPADKGETPQXKLGERPDQRPCQRLSGDHPDH
>Coprina_Cc1_pol#LINE/Penelope 127-2549 [Coprinopsis cinerea]
TTPSLTAAPWQVEQTSEPPRKRRKTTEDVQRRPEQAEEGRQGKGKGQLAVGVLPSDFRYDNPSSYPDWLLTVPYPVAISTILLNTPARILEAAQFRNYVHLSPGVNVPLEYQYALSVGLRYMFPTPRNELLIRDAWKDFERRIRWRLFFTFSNEDNSLFDPDYEVPKQKSSAPPRLPAYLEHGLQRGELFVNQTIAKIRRLPVEAPTYKSLKPNRDDLFEFLTSNNYVITGTDKNLGIAVSERTWIDERCKEILDVRSDYREIHIIQLNQICNEQCRQMELIAQLATATHPNGKQLGEFFRSKITEKCSDTSGREYGDHTVPIFYGIPKIHKVPTKMRPIIPCHSAIQNPAAKFVSKNLKFLIKESPTILHGSKDLAQKLSNVKLKPGRRWFFISGDVVAYYPNIPREDCLREVFKMWSDARFGRTLDDNDEGTAEHYEFSLMYNALMTGNKKLVFRYGSKYYEQIRGLAMGVADSPDLANLWGVRSEISCGVLTNPLIEFYGRYIDDCLGVVYAHSEEEALSIAESIKIEGCTIEWTASEQYVHFLDMTVYRDSYSQLQWQPFRKAGNHQERIPWISAHPLDVKRGTFLGEMSRLATLSSQYDTYREALHGLAALYTKRGYPSELVSKWLKDNASDKWEKRLSDRNHDSTGTDGVLVLKSTFNTAWNYFSARELGDTILGYWKTYAEKAKKDQLGGIHWQQFSDNVGDFTDVPDELMSLFRTTKGLRYMPDVSKTNIWQRKVLVSRKRTRNLFDLTSLWKKQVLSKLEEDILMDVDSDSDQMSVDTPSDRSDGIDPNFFINYTLGRT
>Coprina_Pc1_pol#LINE/Penelope 345-4142 [Phanerochaete chrysosporium]
MPAQDTTRRAVRATASSSTGHFPSFTRALSPSQASVVLGEQISFGTFDERCAAALAHCTLLDEVIATLPKLYQVALSPVLTDIHHDATKRVEIAAQLERLRQHKAAGTLPSPLKGLGSTPAIQFMKGFLESQKPDFPGKAPDIVKACAAKLLDGFIETKAAEHAWYESRLQAMEVTRRVLTAADTHWKDELEQRYQVLEGFVRPPVEGQVPATVPSAEELHPLKFVTDPVMVAQHENIRRSIPRLASTVIMLVVNRALTQQQRNKAKRDLKDQADVEMATDDTAVDSAVKRLEKQVEGLVSGMKALTNGKGKVSFSSSSRTHVEDAHPFVSGQSPSSRPFSLVDHRARHEAQGVQLGKRLRQRQDDGHQGPSRRLRCSSGEAGSPQEGQGEGTREGQEDPEEIVAYVRAAPWRYDAPHSYPDVILMLPAPRAIQLLLERVPLEVKRAARFRSRVFLGPHVTVPEHLQMHVSSSLRYLMYSVPSSNVVREAWEDFKDRFRWRVFFTEKLIDSPNDDDPDFDPDYVVPKARKRFDDGVRTTPAYIELGLRKGDKFVDDYISNVMPSVKATSRSLNLVWLDELKDYLSANKYIVSPSDKNLGVCILQADWATDQTRTLWNDPSNYRKLGSLLEADEIMEEKHERIFRAARLARRLGKRQLAEFLVSKIHGKDAKTAGYTLGQFYGVPKVHKRPVKMRPIVPCHSVSQAPSATYVSKMLKPLVSRQPHVIHGSKHLVRQLESLQLDKHRKAWIVSGDIVAFYPNIPLENCIRVVTQMWRNSPEAEKLSPEERQLFLMSFMTANKRLVIQFGDEYAEQIRGLAMGIACSPDLANLYGSHYENPILARPDMKSKFAFFGRYLDDVLGIVYASSAEEAMSYANEIRYDGVEIEWSVSEYHTPFLDLFLYLDPVEKRLHWKPYSKPLNHRERIPWASHHPKDVKKGTFIGEMSRLATLCSKLEHYRDAISDLSNLYLARGYPDDAVRSWVKAHFSQRWERRLGEPIVRDEVFVLKSHFNPAWSAFNVHGLSEVVVESWLSSLSKLDGANQSQDRTWHAAESTDGSELKIFRQTTLGQFQGEQSSLYPGESRPEGVAGRVGVANVAKPRVTYDPRDVMDVDELVALSEPSFSAHDLSVVWTDNALRVPKSLRIRYAMAELRLDADPQVNPALHVPLGVEDQVGDLGPASDAESVASGDDGTTNSKPYRICTAKKDSGIVQEDLDIRSVGFHDRAWLVSRKKIRNLGDIVNSWKKDIIQAALNSDSVPHMHVDEWQ
>Coprina_Pc2_pol#LINE/Penelope 27-3662 [Phanerochaete chrysosporium]
MSSRATSLPPAFAGLGLGESRRGPMASLDAVLSRAGSPVPEGRAAALHTSGADSLADARGSSALYRVLENCTSLNEILAVFPPAYRDCVRGTLSDLNRWARVYAANWLAQQRAARHAAAGTFPSALNSIKVPTFQLSQEWSKEDLARGLNTSAAQAVQKAKQACFDAYKFALEQEEHWLHEKLDHTRRVREMVAAINVAWENHVKPFALIPKDDAYLDPDSMLVEDGSHPDTRDKWIAPASAKGEHNRAIRLCQLAFGRVVQIRLAEVREEERKRLAKQEVKAAADVALGAPVNQQTVQRLVAAQVKAALKARGSSSGSRPRGVPGGKPSIKGKAKTAPAPPRKSKSLFSAGVRSPLTFSKRRNIRGSGQGTTSLRLGRKDLQPFQFQAPTPTSGSRRPATPGQKQRQGAVERVLRDPRWRYEHPSSYPDELLTLPLRTQIQILHTRVPLELVEAARFRAGVHVQRGVEVPWEIACTLSSGWKYLLPVTWNFSGVFQGWEQFEQSVRWQAHFATNPPPVRFYDHDYDTGRRSERAPPPAPIHIEAGLAAGRAFLNRLSGEAEQVARRKRREELANLVPVKSALRYLKEHSLVLLGTDKNLGVAVCQAKWYKEQCQRYIDSDKAIIEIDRETAEELVRRLSRKIGDVIASPKFTDSERRYYAQLFDWLGSKRPEAHGNRVYIPKFHGIPKIHKDPWKIRPIVPGFNVVAAPAAKFISKMLKKYIAAAPYVLTSSKTMAQELLQLPKFGTEPYWLLTGDIVAFYPNVPLVDASVVCQQYVFNDPDVALPLRVLFGELIGLVNWGMVYEFDGRYYEQVDGLVMGLACSPDIANLYAAHHESPLVPQVEGLVYYRRYIDDAFAIVAAPSKEEALRRMRIVQFGKCTIEWECSGTSTAFLDMHVMIDKFSRKVEFQPFRKSMNHHERLPWASAHPFDVKKGTFVSEMSRLAALSSKVSYYQDALAGLKSLYLARGYPLAVVSSWLRSNGTRMWLNRYTSEAREARGRTAVWVVKTSFNPALEALRVNELWETVKEQWRNVPPGTRTAFDISKTDFLDRRMLISRKRTTNFGDLIRRVCREVLQHDEMTDEHDVVDPELVDQLKRLARTARGVMKRISVMAVYPLPSASVSLRGYKPLLDSAHGLSGGTLLTDFASRHRHGYLLGELTDTLHAGLLVLAFVFTFISVIRRFGSLGREPPDFRLGIMCVRSVVLQGT
>Nematis_C4_pol#LINE/Penelope 118-1908 [Caenorhabditis sp. CB5161]
CQKIKKAPRGSGILEEQRRTALSISDKGGEFVVSTRDLYRETVEKHLQDRSVYREIRQLEYENAVTLLKHAQEEVYRSWNRWTVDRLMDPHPSINTFYGLYKTHKFVERGDKANSKNIKIRPIISGSGGPTDRPSWVVCTIITQLLQFVPCHLKSTSEFLEELGRINSPNELHYESFDVESLYTNIDNRMAMEAVVRKLRKHSTEIEWFGMSVREVTHLLNACLNFNMFQFNNKLYAQKRGLAMGSRLAPVLAVLYMDIIECPSKIHPTRLFKRYIDDFIIITESQETLDQVFKSLNAQAETIKLTREKPSEGWLPFLNCQIRQRGNGFETKWYKKPSNKNILIRIESCHPIRQKRNIVKVTRKTAERTTSEGNRDEAEKLAAKILLKNGYGTEWEKFRNTKGHRWKQPSRKTDPGKPVTTILPIPFISDQLSDLVRKTLNDVGIDATLVELKGKSLKDQLVHNRLFDIRCDKTKCRVCPTLGVGACGKKGGIYQLTCECGEAYIGETGRPLVMRIDEHVRAANNPQRPSYATNAFSKHAKAKHGGL
>Nematis_Cr_pol#LINE/Penelope 210-2309 [Caenorhabditis remanei]
MLLSKGPKFAPSGKFNQKVLSRISMGFVSLAATLRTRAASRSQNGITWDTLPPIPFPPAHFFLHPKSDKTDQQVAAAFNIFMKKINEQKCLHIADNMSKKMWSALKELGQNKDINITVSDKRGEFVITTNAFYRESTILHLTDTSVYTKITKTEYNEEVKKFYGGIESVLKSWNKKTADRLTDCHPSKNTLYILYKTHKFEERGEKATPSNTKVRPIISGVGGPTDRPSWVVCTIISQFLQFVGCHLQNTNEILKSLNDIRGKKIKTEIFYESFDVESLYTNIDNEAAYEVVITKLKQHYAQIKWYGVSFRDIKSLLKTCLNFNAFVFNEQHYVQKRGLAMGSRLAPVLAILYMDKLESPSKSLPTLVFKRYIDDFIVVAESKEVLDSVFKLLNAQTPNIRLTRETPSNGWLPFLNMEITVEKGIFATRWYRKKANKNLLLPIDSHHPTKQKRNIYDVTKSTAMSMSSITHRDYSMELAESLLRKNGYNSRPKCPRFTFSEKKQVSNSNGKLFTDLPILPIPFVSDWTTNTVRNTLAQVGIKAMIIELKSPNLRDRLMKSRRFDNKCQRRQCRVCPFIGNGGCGKKGVIYRIDCDCGDFYIGETGRPLAERFNEHSRAAEKPGTPSYKTTIWSKHSFEKHQGSPLSLKLSILETERNTTRRRILEGIYIKTVNPTLNTKEELSDMVADLGFGITLTRKL
>Nematis_Pp_pol#LINE/Penelope 3-2273 [Pristionchus pacificus]
ITKLSREIGDRLRASERTRLYKKLQYLCPSIIPSCSSPSSSISRVSVASDVVLSPDAISVLSLGPKFVPSRPFPRDITLNLSISLHQLSFSLRWAHTLLGNSSSSIDPLVHKIPFPSVRSGVPPPVLSIDSKISRLSTHIRDIVSNHRVLPLCNNLSRAQSSALRDLRSQISSGSLRVTKSDKGGDFFVVPQSLERDIVKLHLSDPSIYVTSSSAQFKRTCDSIHRQFRAISPNISLPKRTVDCLLSGVPQVPVMYVLYKTHKCDLASAGNDPSRYPIRPIIVGCGGPTDRISWFLSQLLIPLLKHVPTHLTNTRDALTALSSLDSNPDLCFESFDVSALYTNVSNRDAIRATMSLLSSHYRSLDLRGLSLLDIEDLLNSCLDCNIFAFDGLFYAQIRGLAMGNRLAPILAVIYMHYIEAQSIRDGIVWLGRYIDDYIVVAVTQNHLDSLFTSLNTIGAPHIKLTRETPTDNWLPFLNFQLSLTPDGVFNTKWYRKPANRNILLHASSCNPSHSKRSIVISTIRTAINVSSHTYRSQSRSLANHIVSSNGHCPPPRSKCVPNTRVSRRVDKPLPVFTIPFISDEFTRDIRDALCKVDLEVRIVEKPGPNLLNMLSRNRYLDPPKCPLRERCFFCPTGGEGCCQTAGVVYLIECSLCSHTYVGETGRPLHLRAYDHYKSSRNPTCNSYKHNAFAIHAISDHNSNPISLKGTIIHRESNTCRRKIAEAMFIVKLDPALNNRIELSKESAPITL
>Neptune1_Ac_gag#LINE/Penelope 1-741 [Anolis carolinensis]
MAEWQQGLSFDDKFKESLIKDRSLFESGESTSGNPNTATGIREYEKLKRREIRLDLHASTLAEYIRANRIPRGLRIFKPPGMFHDDESFNQKWVAILNKCSQDLMLLLIARSNDEIANVRTQTQVILERLNSEDQFKTDLDTLTCKLKEFSQQLRSFKLKKFERDENDYNNNRVYQWLYSKRQYSKKQVRFSEYTSEEDTESMSDSSGRSMASTRSDNIRVPRRTGRTRNRPNRFFQEAPN
>Neptune1_Ac_pol#LINE/Penelope 693-2936 [Anolis carolinensis]
TQSFFSRGSKCQTEDLVVNLSRRVLTPQEREVVNKGLSFVPKPKYNPFRMRIELARLFRTIRLRHHFGTKINPITSTFKPRSNFFPTTDHIGLRVFEKTVSEELCCTIIKQKRSYSTNFSSKEWHILHNLANDKDLVWKPADKGGAIVLMNRTDYMDEIHRQLSVREHYLNIERDPTHHIQSIIRTVTLEGLALGYISEDVYKFLHTPWPRIPVLYTLPKIHKNIRPVPGRPIVSGSGSVLEPLAKFVDHYLQPFVKQTSSYVRDTKHFINIIESLVIPTDAVLMSVDVISLYTNIPLEEARYICESTLNRRPNHHPPTFFLLDLLDIILEKNYFKFDEKYYFQIQGVAMGSPVAPAIANLFMDNLENETILNHTKNPVADGIIKYCRFIDDIFIIVNSHQEAVTLLSWINTIHLKIKFTGNISSTSLIFLDVVVTKENDRLKVSNHRKTTDRNSLLHYNSYHHWALKNNLPFTQMLRIKRNSSTLQDFNQEMEETKSRFRNRGYPESIIQSAYSKVASIPRSKLLEDKIRPGVDRLIWPLTLTSLSNLAIKTVKKYWNLIRDIPGCDRPPLVAYKRTRNIGDILVHSNITNRPRTVKSNLVGNYRCHHCSVCSQLIETKILTHQHLSFEFKFPHFATCTTKGVIYMIICDCNLSYVGQTRREVKSRIIEHRSKIRNHVRESILYKHFCDLQHSPESFKY
>Neptune1_Ap_pol#LINE/Penelope 100-2535 [Acropora palmata]
MRITIRAMCVKRDDLDKQILQCRSELSKICPVVLLNSIRAKIQELNAALFNHLHQIKTLKLKHFIGPKTSSHGTFDSQNTVVTIPENLPLTDSEKSVLSRGLNFVPIAKSTDEFSVKQDVEKFPRRIQLKAFFREKEDNSYASDKDIFETLHVRKSKWTPPEGQFASLDFFIKKCRHDVHKLKSNCNTKLSNLSKEEWTALINLKNRNDLVIKAADKGGATVVWRTDLYHQEAIRQLSDPTFYTKVNKDLTPANQKIVKDTIQELITKQELPVTAQNLIITTPRTSCIYFKPKIHKTQQPRPSIVSACSCPTELISSYFRQSHDTHSQITTFIYQRQQPRTRNIPGNFQFSQAENKIIFTMDITSLYTVIPNNEGLQALKYFFNQRPIKKPSSETLLRLAELVLTLNCFSFGDNYYKQINGVAMGTKMGPGYANLFVGLIENKFFSNYHGPKPDLYKRYIDDCVGATSSSKEELNLFINSVNSFHPALKYTWEISENSLAFLDIKLSINDNGLSTSVHYKPTDSHNYLLHSSSHPQHVKNAIPFSQFLRLRRLCSDDTDFNNKCEEMCQFFKKRGYPDSAVTTGKHRAQEIDRETALQTSQNEETDRIPFTLTYHPQNLAIKNVILKNFKILRNDPETKHIFSLPPLISFKRDKNLGNFLVRSAFKFNNQPGTFTCKRTRCKTCPFISNTVKISGPNRSVKVTDHFTCISTNVIYCITCTLCKKIYIGETGRRLADRFREHLRDVEQNNTDASKPVARHFNLPNHSHHNMTICGLSLHHGNTESRKNLEQKFIFQLGTLSPH
>Neptune1_Nv_pol#LINE/Penelope 334-3378 Longer than others; perhaps p1 and pol combined. [Nematostella vectensis]
MGIDITAYRVHIGSFPGRHMARSKPKNISTRQRSPTNLKCTLHNRPAIFMLFVLPILIAKSMDIETNPGPVTNMFMDSSDPQPLTDNLIYPLTPLFNKTKKIQLKLVRFQHHLINFTFYRVHNLLPQPILPRPPIRSHDRNFNRQWYFISRNAATKHLKLLTRECNRKIAASSQELLHHRTLLERSCTNNAYIFYCRKLDSMALSLKSLLENRRNNKYSRRNLPNPDNDNTSTITPQAAPNTNPPPVATPAPQRRRRRRRRRRKNNSVVTLDSTSVINISSTSLSPDETSVLARGLTFCPTPRKIDWSQVNADIYDFNRRMRLAEYFFNEDKPNDNDTLSFDSSFNPFRNKSTWTPSSGRDNSLDTFLNSVKLQIQNSTLNKTRSNITPGERNALTQLNQRQDIIIKPADKGSGTVVMDKDWYINECNRQLNDTKFYTQLDADITNDIQKRVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNPGRPIISSNSHPTERISEFVDYYLQPLVSKLPSYVKDTNHFLNILLTLSNLPTDSLLVTLDVSSLYTNIPHNDGINACHHFLRTCNTNPIPAGTICDLIRMILQMNNFSFNDKHYLQKHGTAMGTRMAPSFACLFLGLFETNALRDAPYKPHTWLRYIDDIFVVWTEGLDKLNAFVDYLNNLHPTIKFTSSHSYNNVPFLDVNVSLVNSKIETDLYSKPTDKHQHLLFSSCHPHHTKKAIPYSLALRIRRICSTEESFNNRCNELTNYLLKRGYKPAFLKRQILRVANISRIDALRPNNNNHKNSRRIPFVTTYNPTLPNINNIIRRNYNLLLSSKRCHKVFTEPPLVAFRRSPNLRDILVKAKLPSDRSPTNQPPGAFRCGKNCLTCPYIRTDGLTSYTFFSTGETRPITSHITCNTKNVIYMIQCNRCNLQYIGETKRKLKERFNDHRRTVDSQSRSIPTHAAEHFLKPNHSASDIELIPIEKIRNNRDSIRKAREATLIARAGTLEPGG
>Neptune1_Ren_gag#LINE/Penelope 1-1632 [Reniera]
MLPNYNNHWQEARNRNTNRQPNQYHVPYNGPVFHRPLPPTNRRPPTNPSSYIPPHRRPTYNTAYQSRGNHRPDQQQKRLPAHRRQPVPTHKEEEPFVKVFFQVLQCLHHLAILTLQQQGQPAFTFKRKVSELDGFIRPAMKTSAVDANIRSLNRTWLCKVTQVLIDHYQTTLKEKLTTIRTKSLSSPAVDRIVSHALSWARRSYGKRLTQAVISKFYQTINETKTRVTISLPTEMDTTPAPSRATTLPNQTPKRARSSPTPSPADIGKRSRREGTPLLFSLSDSSSPSTPSESSPRDPGSANLSSFCAFLDQQTTPRSPSKSRHVSRPSPPRTRSQSVPNATILTTTKPVPITPSTTIISATKPYYHQTKDKSLWKLPALKKSTLIIGSSNLNRITKTSSDTEIHSYPGAQIHHIQSILESYDHDPKPTTIILHVGLNNRDQIPKTSFNQAQKLIATANKTFPNSKILFTCIPISNKISKKAQQNLSTLNNMMMESSINSATILPPYEEEFETVDNLHWSPETANSIYLFWIHQLQASSKSLN
>Neptune1_Ren_pol#LINE/Penelope 1620-3890 [Reniera]
VFKLITGDKNTERPPLGQTVVNLSRKILTPLQHSILDRGLKFIPTPKIANLNYLRPSIERFQRNLSCTYFFRNHPPRGARTMFIPKSTWTPPQAAIHPEILKAFASMNSQTVNLSITHEKPNLTRVEREALNLLKKDDSIVIKKSDKGSCCVILNREDYVSEAENQLNNPKHYAILPKPIFKETANMINNILADLVKTSYLKQKQYDYLSAKPDCRERHLYTLPKIHKNPTKEWFISNKIPKGRPIISDCGSESYAVSEYIDHFLLPLACQHRAYLKDTTDFVNKIKNLRVPSNAILISIDVSSMYTNIDNTTGLTAVRKAFNRNPDPNRPDDAILQLLEICLSRNDFTFNGKTYLQTSGTAMGKRFAPSYANLFMAEWEREVLPLCPFDPLFYGRFLDDIFMVWTYSIEQFWEFFEILNNHHPSIKLTANVSDKSIDFLDTTVFKGDSIAETNKLDIKVYFKETDTHQLLHKSSFHPKHTFSGIIKSQVLRFHRICTRSSDFNQACTIVFSKLKERGYSKRFLRNIKNSTLAQIAAKNRLYAEVPPGLRSAPCLSSRCKTCPFISETHYFVSNSTNKRYPIQEHLTCEHSNVIYLISCKKCPKQYVGETKNNLRTRFNAHRSDIKLKKDKPVSNHFNLDDHSIDDLTLIPIERIEIDLPEDETTKFRQSREAHWIETLNTARPIGLNIHHNVGIAPFVVPFNTTSNRASKIVHAHYKSLQEKFPHVYKQKMIVAYSKNKNLNDNIVHSKL
>Neptune2_Ap_pol#LINE/Penelope 1-1542 [Acropora palmata]
ANTRPVVDSENIDKYRNTAKKIGKYRNTASKVDEIPKLQKRGIRRNLLKDFDLFARRMRLKDIFSRERNKQHPFHVKSTWEPPVQQSVALETFLEEVEFELANSPSKRPKDNLSPGERRALHNLLGDKTIIVKKADKGTTTVIMSREQKIKEGQILLNDLDNYRPLEKQMADETVEKIKQLTTSMLTESHIDEMTVKWLSQTPNPPRIPEFYTLTKIHRPTLVGRPIISGCDGPTERISCFVDRLIQPIAQQQESYLKDSKDFINFIENTKLPKNTILASKDVTSLYTNIPQEEGITTVCKAYEDFYKNRLPIPTNFLRRMLCLILKENSFQFNKRHYLQTHGTAMGTKMAVAFANIFMAKIEKGIISKSIIKPLVWKRYIDDVFCLWDTNEDNIKEFVTRANHYHDNIKFTAEISDSEIAFLGHKSVQRREIQQRLPPSMCKRIINKQRPFNTRNFYSCHPPGVKKGFIKGEALHLLRTNSSHSTFNKNMQSFKT
>Neptune2_Ren_gag#LINE/Penelope  388-873 [Reniera]
NHKHSISIENTPNQRKKVLILEKRIKYHKKILTNKSIPAKYKPQHLLESSEASQNEMNSLFIKEYNEIFFKHLKRVIEADTTVLKVKMARLQSAKSYHHQPTTVTCKTHTSAKPQQANIYASQEANSRKRKNTDSQSTN
>Neptune2_Ren_pol#LINE/Penelope 708-3224 [Reniera]
NPHISKASTSKHICISRSKLKKKEKYRFTKYQPNKATENKSFFREKSSQTTKHRMTNSNTIYNLSSYKLSQSQLNILNKGLSFSPSQPFNLQDHLSFLNQYDAFSNSLRDLALTDNDRPQHTPDLSLDSVTQHLYREMKFLKGSTQPHYPPYFTTNIASVENFIESTKIEIDELLSKITSKQKENISKQELKAIKSLKKSNLVIKPADKNLGIVVMNSNDFVEQCLKQLTSNTYVRVETVPEEEIKKKIQNTLVKFKNQFGASNNRLYCFLQPNQKYQTPNFYGLPKMHKELDVNGLPPLRPIVAHNNSLLSNTAKFIDHILQPLAQAYNDYLKNSTQLISYLETSTIPNDIILVTLDVKSLYTSIPQSECLESVRNEMFNHQDLIIFDPDLITHLLSINLNNNYFEFSKKVFLQVIGTAMGAAFSPTVANIYMSVLIKRFLSSTTEKPFFFKRYIDDIIMLWPKHQDLNNFFNKLNKFHPNIKFTMSQSETTINFLDITIYKGEDFSETNKLSIKTYQKEINRYQYLHFNSNHPIHIFKGLIIGETIRYVRTNSTIIEYKKQIKRFTERLISRGYKINFINTAIRSVNYKNRAKYLQNNNNNTTTKQRLQQPILKCTPPPNFICIKRIILEQFHEYNLSRYSKEPLFVTLKSNTLKDILVHSKHRPSTKDLRKITEETSPIPQHNQPKRIVTLRTTGPNKCNKKRCSTCNHFNSSAIFKSTANKRQFKIEHPFTCTSSNVIYLITCLKCQKQYVGKTSKTLRERICHHRSSINNNEPRYISKHFNLPGHQLSHLKVQVIDS
>Neptune3_Ren_gag#LINE/Penelope 664-1050 [Reniera]
MKYKPRKMVVISHPSQDELNEAFMQDFKDIFLKHLEAAIDSNKTTLEIKKSRLQSLSNEQGTNHHQPIQQDRANISVSEATRPKPKSR
>Neptune3_Ren_pol#LINE/Penelope 879-3410 [Reniera]
SKYISLGSNKTKAKVTRDNQGTSKKATLKLKSTSIKKTENNQRFFSDRPKETTGQYIDSNTIMHAQHSSIHNFSNFHLTTNHINILNRGLSFSPTQSFNPQDHVSFLTQYDLLSISLRNNALTSNSNNTVTISDVETEEEFLYRPMKFINKEKETVKIRENRFITDIPDLESFIEGTKILIDKLLKREYRTRKKSNLSNNERKALKNLKTTEITIKPADKSLGVVILNSSDYVHQCLEHLATDTYARVNSFPSEDIKRKVKNIIISFKKDLEPHKRLYNYLFPNSSHRTPRFYGLPKVHKSLNERGIPPVRPIVSHTNSILSKTAGFIDHILQPVAQFFPDYIKNSTELITELENLTLKQDVILVTMDVINLYPSIPQKECIEIVHNEMVTHSELVTSNPNLITQLLQLNMTNNFFEFADITFLQRKGTAMGAAFSPTVANIFMSTLLRKFLSSTSDRPLFMRRYIDDIFMVWPRNKDLDKFLSELNNFHPQIKFTTTQSDTAVNFLDITIYKNSNFTATGKLSTSTYEKENNLFQYLHFESNHSISIYKGIIIGEAMRYVRTNSTEEKYKEQLSKFIQRLKERKYPESFIYKTLRNVSYKRRTLYLRKVTKAKPQIMNRPKMKCIPPPRYLQLKKIIINEFHRYNLSRYCNQPLFITLKNTTLKDLLVNSKHKPTEEDGRTIVAKTKEIKNHQSHNLNVIRKAEVKQPSKCNHNRCATCQHFNPNINFNSTSTRQTYRIRHSFTCSSSNIIYLITCEKCRKQYVGQTTKTLRERIYHHRSSIKTGQRRYISKHFNLEGHKI
>Neptune_Hyd_gag#LINE/Penelope 603-962 [Hydra magnipapillata]
MFKIMNGDCFYPMTNWPLDIQIIFWNYVTSDLETFKLTIFFLGNGCSPFVLFTFLILGFKRDPSKFNKRIYQIKWITKNLESHNSRWY
>Neptune_Hyd_pol#LINE/Penelope 1491-3356 [Hydra magnipapillata]
MRTLFPPGENFRHDRDFKRWVDSEKVRMLTALTDKMITNISDHVLTNEEKEALGKGLKFIPNSQKVGREVYEASVEKFKRKLRLKMFFKDRKEQKRSVFYKKSSWVPPETENENILEYFGKIDRDLEEMWNREIPRKRNNLKPEVWRALKNLQNNRDIIIKKTDKGGGLCIMNKTTYEEKVNELLMDRTVYRELQTDQTNNIVRGITDMSNYMLKLHKINEQTAEFLLPHKPCRPPLFYGLPKIHKPNIPLRPIVSACSGPTDNLSEYLTRFIQPLVESLPAYIKDSIHFLNMLQNIRLQSSEFIFVTADVTSLYTNIPHRDGIDAVVHYLRLIPLQDRPPDCPSPGIIGNLIEEILSNSTFSFGDKHYHQLTGTSMGTRVAPCYANLFMGRLDEQITNQFPNHITFYRRFIDDIFFIFQGPIEVLDQICNFMNTIHPTIKFTFNHSATSINFLDILLYKNEQGNIHTTIYRKPTDTMGLLHYDSHHPTHTIPGTIYSQALRYCTIITELNNLQKELKYLTMTLVLRDYPLHIINNNIKKALHKTQHELINNRRAQENTERLTIVTPYTPIGQQINSIILSNWNMIDPNLQLQDIFPH
>Neptune_Sp_pol#LINE/Penelope 3-1430 [Sphenodon punctatus]
CYIKPYCYKNNEIKEGIKTLLQEGLVKGYITEQEFNLLLNSSPRTPVFYILSKIHKKKLPPPGRPIVSASNSVLEPLAKFVDFFLRPIIPQLQSYSQDSTHFLNIINNTDYGRLKFGSVFLVTLDVVSPYSNIPPDRALTIVRSSLKLHHVQGPPPGYLCHLLGLFMTKKWVSGFFYLQNLGMAMGSPWLQKLQTCLWVLMSTVLYLTLIQTPFIDMYTYGGGLIWTGSEAELKGAHEFLNGCHRNISFYLHYDKFSINILDIRVTMEKEGFTTFTYVKPTDKNTYLHYHSFHPLHLRKNIPNGRFLRARRNCSSDVGYRLESDRLYQDCSRGYPRRYLDSARTRVSRFTHKELLDKQQNNSATVRHVCSLTFGHLSTWIRSFILKYWRLISHSPSCDLPPLFVYKRTRNWDDLKPLALQKDTKLFVTNGKTYYLKFFSTCNTQRVIYVLKCTTY
>PENEL1_NVi_pol#LINE/Penelope 581-2722 via tfasty with PENELOPE_SM, 2 frameshifts and 4 stopcodons. [Nasonia vitripennis]
MNFLKLKSEKLKEHLQEIIPHNVISIFEDLNNDHGDKLNKIKKFSKHxRQIRTPNRIAKNGFKISSIxTYQPIYNLxRHxDKNLIQKVNLSDTKTIECIKNIENLITYNNLSDKTANDIRNILIKKITQHRHKTKHIKIEETILRKNYKTLKILLKITKNIMFTLADKGNVTVAMLRSDYIEKMELQLSDRNTYTEIAKNPLSKIQNKVKKFMNNWNTNGFFGKKYSKFKFTQTDTTLPKCYGLPKIHKKDIALRPIISTIGSPTYFLSKSLLKILQNSIKKPDSYVENSYDFIEKIKNVVVPPNHRLISLDVKSLYTNIDKSLVKKSIEKRYIQIVQKSEIPLNEILLACELLMENTFFQFNGKFYKQLFGTPMGSPISGFFADIVMDDLETDCLSKLSFKPTFFYRYVDDIITCVPNDKVDEILKTFNSYNNRLQFTHETEIDNSISFLDVLLIKDNDKIVTDWYTKPTFSGRFLNYTSQHPMSQKIAMVYNLVDRAIKLSNKKFHNKNIQNIKKLLHENHYPPAFVNKYIRKRMSTLTSNTLSRQQISSNEKRNIVSLPYIQGFYEQTSHAFKTLNIETVPKINSQMKNIIIKGKDKKDKDLENNVVYKLECNDCSATYVGQTKRNVCIRINEHKKSKNTVISDHVNNLNHTFNFENYHIKDREINLNKRLVSEMLHIHLQENGINKKEDTQNLNTVYTHLIHQLKTKQT
>PENELA_Smed_pol#LINE/Penelope 2-1806 via tfasty with Perere_Smed_pol, 1 frameshift and 1 stopcodon. (5' truncated consensus)  [Schmidtea mediterranea]
YFGYLTNSSYSKFINIDKVKYGLQSSAVEYLKKNKLQNISDFAVLKNLSKKAVKVCNFDHEVDYFDKLYKVLEGPQFVKMDNLRKNFKYPPQKDEEILNKLVFRLMKDKHLDCDLGKQLYAVGSQPAKLYGLPKTHKKDVPMRPVLSMIGSAQYKVAKVLDSLLKPLISKEYECRDSFEFVDFITNQAVDSSDYMVSFDVTSLFTNVPLNETIDLCCDLWREKMLDYQTLDEVAFRELLRFATSNVAFLFNDKWYQQVDGVAMGSPLAPTLASIFLSKLEKQISEFPFVKPKIYKRYVDDIFLVFSSSDDVVPFFKIIxMGFILNIKFTVEEEVNSFLPFLDLLVEKTAKGFETEIYRKPTDTGLYNTLNSFCDFKYNRNMIKGLIFRSWSLSSTFEKSNKSIQKLVSLLNKNGYSKAFVERLTKETIDRLMIAPDENNGNHSPPNDGEPIKSHVFVIPYSEGFRNFKLSVTKSLDNSNLFKIVSKSLKSINMFSNKSQTPIGLVSDLVYKFSCNGCNATYIGETSRHLRTRVQEHSRLRGVSNIIEHRKMCKGTTDLKDFKILYKNFNNKWERILCEALVIKSQSPKINVQSATNLLRLFN
>PNL_SM_pol#LINE/Penelope 400-1923 [Schmidtea mediterranea]
MNLKKRLAKSFVTKNLDLPNFYHLIKINKDVPSIKNKPIVSKTNGSTTKTSWLLSKILKSLLNNVLYHLQSSDCLLARLNITGKTTHSKFKYPFSLDIIALYTSINQSEAIECVRGRLENNLLIKEMNTKNIINLLTVILENIYFTFDQKVYKQIKGLPIDSSISGLLAIIFMDYLEQQTLRTIQSIGFYARYLDDIFITTKSKKEAEQIFHIFNEAHRDIKFEIEYQDKNESLNRLDIRIKIDGNTPTYEIYKKSTHKYIFMHQKSALPYLQKVNVIKNEKQRIANRYTEGKKNYKKQLKFDKALRTNGYHNEDIERMNSKPKIPINRTQKKKKYFYLNIPFISDTLDFKIRKELNHTSLPIRISHKSWTLKQALANNTEKEKICTMKNSKTPKKICFRKNVVYCIICNACKEIYIGNTFRNLHQRIKERLDPAGKSSHLQKCQPKKEIKSISTKILARDNIQKNFRFKKAIIILDKHPSINTKEEISEIASLICCKLLTLILLLKD
>Penelope1_CI_gag#LINE/Penelope 19-588 [Ciona intestinalis]
IMATLFEDPEIEEVMVIIEEDINMLEQDDAGSVQTLPEKVTKNRKVKIMNLLQLNSHIQLAEKKAKAMYGSDFEDICQEGRKTDILAAYNEEKTNSSFTKKFMKLLPNSSIWEERSLLITLLDIXIDVRIADVQPTSTDMVELNPIDLNETELEVAYYIGGRVLRTLYYKTCKELYINFKDPNVKVYGC
>Penelope1_CI_pol#LINE/Penelope 1237-3182 via tfasty with Poseidon_Ac, 1 frameshift. [Ciona intestinalis]
MAWQIESSTGETLSNKDWVMNMSDKELTPAQSVLSLGLNFAVSPDNVPWKQIVASIEKGLVGQPLHIKSLLQSKLVGCIRSHKTATTNVPKSYLAAIRELQKDRSIVILSADKGNRAVVMNRTDYTAKLLELLKDARTYKKLARNPTPSLERKVNNYVRRLHREREVLSYSEFRQLHCTDGRTPQLYGLPKVHKPGIPLRPIVSFIGSPSYMLAKFLAKIVVPLIGNNSHHVRNSHEFAAEVTEMTIADGECLVSFDVVSLFTNVPIPLAMSDAVTRLRTDHLEDRTVLSCEDIEEGLRLCLNATCFAFQGAFYQQVFGTAMGGSPISVVIANVVMETIEEXALATFMHPPRYWKRYVDDTFAIIGAEQLHPFLDHINGIEESIQFTLERENEGRIAFLDVEVSRDEEGGIKTNVYRKPTHTNRYLSFWSAHPIEHKKAVVRSLKHRAEALVSDPLRLQDEMXFIKDGLRYNSYPPWMVKWKPTQKPKEITPTIATVSLPYVPXLSDTLKRMLTDHGIKVYPKPHTTLRSLLSHPVENQATEPKGVVYLIPCGDCEGVYIVETGRALKTRLKEHRRDVAAKDASKTALSKHSAVCNHRVAFENVRILERETDLTKXLFLETPLHIHKHRECVNNKEQCTYFPTVYNNLI
>Penelope1_Dw_pol#LINE/Penelope 32-2533 [Drosophila willistoni]
MTTTDGPPIATQTIGFAEIKLNYSNTKTTINRHQTTSKKLVRLKSSLKFLLKCRKSKLIPNFIKNTTRCDNIFKFDNNTFPDINKTLDRYTYFFHTKILNLLIKHKHNTLIRINNKLAETTKTLGKQLDEQSMSAFLEREQNAVKRLTKTLREHHEMKHEKLNNKRNFALLNNNRTDDWFVNETELEFPPDIKSLLSKGPKFALPIEHEKLPLIKYIADGEEIVQTIKEKEKQEAARTAFSLMVKEHRAMKYINATDRAILNITQRTYKFLKQHDDILILTSDKGNKTVAMKKIDYDHRMMDILSDLNTYRILRKDPTTRLQTKNNNLVDKLHKMGVISKIEKNRMTTTTAISPRIYGLPKIHKEGTPLRPICSSIGSPSYGLCKYIIQILRNITLDSKYNIKNATEFKQRINNTYICDDEQLISFDVVSLFPSIPTDLALDTIRNKWTKIQEYTKIPKALFMEIVKFCIQENRYFTYKDQTFIQLKGMPMGSPASPVIADIVMENLLDTTMDKLTRPPRLLTKYVDDIFSIIHQDDIDKTLDTLNSFDRNIKFTMELEDNGKLAYLDSMVIRRGNELKLKWYRKPTASGRIINFNSKHPKTMIINTARSCIQRMLNISDKIYHEETKMEIINILKDNDFPDNVIRTLFKKHKSTIDKTKNEKTYISVTYVPKLSERLSHSDCYDKDGIKIAHKPDNTLKHVFNKTKSKIEMTNRSNVIYKIPCNGQGNIPCNKIYIGTTKSKLKTRISQHKSDYKMRHYTDTPKTALMTHCATSGHAPNFEETTILDEERHYNKRFTMEMLHIINTPSATRLNFKTDTDNCAHIYRHLLDKN
>Penelope1_XT_pol#LINE/Penelope 52-2430  [Xenopus tropicalis]
FGHDIGGQPYLQTFFRNKNQIPEGIRRRKRTRRGGRKCKRETPQGEENIIFNLSKHILTQGETSLLSKGLSFVPSTIPNTFDTFVDIYRFQRKLKLKEHFRNSQDTARPRFRAKSNFEPPNTPAAVRTFGKVLSLEAKTMANNTKSHPNLSLAERQAIKTIKADRDLVIRPADKGGSIVLLDYSYYREELLGQLADTGTYSALPGDPTYKFKKELDGILFSALNAGWLTEDSTQYMITEHPRIPIIYTLPKVHKSLSSPPGRPIISAVGSLYQPVSTFIDSYLQPIVKSMLSYTRDSTHVIQRLRDLGDIPSDSILVTMDVKSLYTIIPHEHGINAIRRALAMSPLANTPTEFLLCLLELTLTRNYFRFENSYYLQVSGTAMGSALAPSYANLYMQDFETKYIFPLLGEQILTYFRYIDDLFMIWLDGEENMLRFHQELNDLDSPIKLTLNYHHDNVDFLDLNIFKTDSGLGTRLFRKPTDRNSILHASSHHPPATIRGIPFSQFIRVIRNNSSPDTARTQLKEMYDRFLARGYTKNLLDPQLQRALLQTQEGLLQKTNRNKTQATPLIFTTTYNFTSPHLSKSIQNNWPMIGQDETLSLYQAKKPLMGYKRNSSLRNLLVKTDFKGHSTPSTNWLSSQRKLGCYKCPDCVTCRCLLTGPNFPHPHTGKRFKINHRLTCTSIYVIYIISCPCGLYYVGKTITTLRERIGNHRSAVSRALKEGKADQPVARHFLKMKHSLPTFRCMAIDFQPPLSRGGNRDQALLQRESRWIHRLDCVTPRGLNETLPLGCFI
>Penelope2_Dw_pol#LINE/Penelope 73-2586 [Drosophila willistoni]
MAYAEIKSNYNKYKTVINKYQSTTKKSVKLKSSIKFLLKCRKSKLVPKFISNNSKYNRIFTKDTDTYSDINKILERHTHNFHTKILSLLIKHKHNILARQNKEKEKATKKLQEQLDENDFKTFMKSESTIAEKLSTTLKRHHESKHERLRKQRNSVLLNKNNNNTNDWFVNKTNIEFPTDVKALLAKGPKFAIPVEKRKFPLFKYIADGEELVQTLKDKEKQEEARTKFSLLIKDHKTSNKEDAADRAILDTVEQTRKFLRQNDDILILTSDKGNKTVAMDKTEYDKKMDSILNDLNTYRTLRKDPTTRLQTKNNELVEKLYKHELISRTERNKLITNTSIPPRIYGLPKIHKEGTPLRPICSSIGSPSYGLCKYIVNILKNITADSTYNVKNASEFKTRINDTYICDDERLISFDVVSLFPSIPIELALDTIREKWIKIKAHTNIPKLTFMEIVRFCIQENRYFKYKDNIYTQLKGMPMGSPASPIIADIIMEELLDKMMRTLQRPPRVMTKYVDDLFAIIKEDEIQNTLDNLNSFDRNIKFTIELENDNKLTYLDASIHRRGNELKLKWYKKPTASGRIINFNSKHPKSMIMNTARGCIQRMLNISDPIFHEETKKEIRRILKANDFPNYTIRTLLKSNNKKTNKEVSTKRFMSVTYVPQLSERLANSDCYDKEQIQIAHKPNNTLRSIFNRTKSKIDTMDKSNVVYKIPCNGTNEESCDKMYIGTTKSRLKTRLSQHRSDYKLRQHSNIQKTALMAHCAASGHSPNFDEVNIIDQEQHYNKRYTLEMLHIINTPTNIRLNYKVDTDNCAHLYRHLLGTSQCVAPRHSVRTCKNK
>Penelope2_XT_pol#LINE/Penelope 134-2506  [Xenopus tropicalis]
YFRFFRGIHKVPGTKKGHRNRRPRRGGHQTKTPQTTTQSDDQETVIFNLSKHSVSEQEMSVLSKGMSFVPTHHADPFEVTQDIFKFTRTLKLKDHFKNSNSTPITLFKPKSNYIPPNTPASISTFSRLLMKDCKTLCNVPDKSRTTYSNLSKDEWGAIKTLKADNDLIIRRADKGGAIVLLDRQYYRTELLHQLSDTTTYSNLMKDPTVKYSHELGSLLRLGLDSGWIDMPTYEYLLSPNPRTPFIYTIPKIHKSLDKPPGRPIISATDSLCQPVAVYLDHFLQPLVKSMDSYIQDSTHLISMLRTLSIPEDCTLVSMDVSSLYTIIPHNTGLEVIRTSLTNFGHSKPPIDFLCALLDFVLTHNYFLFENKFYLQTSGTAMGSNVAPSFANLFMHHYERTHIYPKIGTSILFYKRYIDDCFLIWQGTDSDLSDFVSHLNDLPSPVRFTAEWSDSHIHFLDLEIFKIGDHLGTTLFRKPTDRNTILHAQSHHPSSTARGVLFSQFLRVIRNNSDRNKAISQVDQMAERFLQRGYSQKLILEQKTKALKFTQDELLTPKTKNSGKQPPLIFTNTFSAESKSLQQALLNRWDIVTSDASLPFSGIKKPLMGYRRAKNLGDMLMVKDLKPPKKTPTWLGSLQKPGCFKCTGCQTCSGMVQGTTFRHPHTGQTFKIRHRLTCTSSYVVYLAWCPCGLAYVGKAATAYRDRMNNHRCAIRAGLSSGSADQPVAKHFVTAKHSLPQFRHMLIDHVPTPRRGGNRDLELLKLESRWIFRLDTVNPRGLNEMLPLSIFV
>Penelope3_XT_pol#LINE/Penelope 192-2516  [Xenopus tropicalis]
PEPFFRSRHKKRKFTRRGGGGKSQRQTPQKTDTVIFNLSQHVLTTGEVSLLSRGLSFVPVNNNNPFDFEVDLFRFQRKLKLRDHFKDVRDLSCEKFRPVSTFDPPNTATSIKTFSQIVQRDTNEIFGSPKKFFSNLTKAERDAISSLRNDKQLIVRPADKGGAVVLLDLPYYKQELLQQLSNTYVYDRLPGDPTKKFKQKLDRELELALSAGWISHDCYNFLVSKFPRCPVIYTLPKIHKNLSAPPGRPIISARGSLFSNVAIFLDTFLQPQCTRMKSYIADTASLLEILRQIGPLPENTLFVTLDVCNLYTIIPLEEGITACRKALVESHTGAPPIEFLCSLLRLALTCNYFRFERTFYLQKTGTAMGSNVAPSYANLYMNSFETEFIYPVYMDQILLYCRYIDDIFILWHGDHIGATSFVASLNALPTPVKFTLNYAKDMIDFLDVRIFRTPMGVGTTLYRKETDRNTLLHAHSFHPPSVIKSIPYTQFLRVFRINTDFAIASQQALEMCNRFIERGYTADFLYSEMEKAIKRTRGSSSEVRPNKTQSERMVFVTNYTPVSHDVNNALKKHWPILQLDTGLPFTQMPPPICAYRRGRSLRDILMVTDLKSESSGTWLKPGKTGCFKCGGCITCGCLITGNKFAHPHTGRKYLIRYRLTCISDHVIYCIMCPCGLYYIGKCVTSFRIRMNNHRSVIRAALASGESDTPLARHFVQQKHSLPMLRAILIDHIPLPARGGDRSKLLLQREARWIRRLDTIAPRGLNEMFSLSCFL
>Penelope4_XT_gag#LINE/Penelope 1-500 Matches Neptune1_Ac_gag [Xenopus tropicalis]
NVDFCKRWCQILNKCSMDLILLVIEEVSKNLKIVHTEISAFETAYLQTLSNDTEHKWLDKLQNQLSQYTSDLHKFKKQKVTTVTADYQNRRVYRWLTGGETQTWGRRAHFTHNPQFDRIDSSPYTTTSSDSDTPDRARSHRRRRQPRSSAQAPPRVPAVSSQSHFL
>Penelope4_XT_pol#LINE/Penelope 426-2837  [Xenopus tropicalis]
AATTTVFCPGTTPRTRSLISVPFFSDKPSPPIRGRPNKRRGGRQHPFRKKFTATEQVVFNLSTHTLSESELSLLSKGLSFVPTSKSYTLDTMIDIHRFQRSMKLRDHFRTSSPTNLTPFRAPSQFEPPNTPKSIAAFTRLLIDETSKHRLPTSTHPNLTNSEREAITSLAQNPKITIRPADKGGSVVVQDYSDYRQEIMQQLADTTVYRKLDRDPGMTFKKVIENSLSLGLNGGFITTDVFNFLTKEFPKCPIFYTLPKIHKNLNRPPGRPIVSACDSLLQPLSIFVDHYLQPIVQKMNTYIRDTGDLLVRLQELHPLPCKLLLATMDVSSLYTVIPITEGISIVQKFLQDQPDRDRPPIEFLITLLNHCLTLNYFKFELSYYLQISGTSMGSNVAPSFANLFMSYFENAHIFPKYGTHIYRLFRYIDDLLILWSGTKDQFLTMVQELNDLLKFTAHIDPISVAFLDLTISLSGSTFSTTTYRKSTDRNTLLHHSSCHPPHLLRSIPYSQMVRMVRNNSNRHLLHQQLDDLVQRFLQRGYPLHDLLHSKERALSLPRTHTLDTNKVSPQKNHSDRLTFVTTFTPDKKFLTDSILYHWSVVEKDRSLPPVFRTPPRIAYKRGRSLRDLLVKTDPIHCYSSETPTTWLPSARPGCYKCPNCTTCSSLITGPLFNHPHTGSPIQIKYRLTCTSKFVIYFIKCPCGLMYIGKTITSFRDRMANHRSAIRSALATGEANTPVAAHFLLKKHSLASLRSMLIDFVPPPVRGGNRDKLLLQTELKWMHRLNTISPNGLNEMVSYSSFYLQ
>Penelope-1_AFC_pol#LINE/Penelope 1-743 via tfasty with Bridge1_TN_pol, 1 frameshift. Fragment. [Cichlidae]
HTHVKEALKTCGYPEWAFIKSAKRHRKEDQTPAREDKKDRRNNIVIPYVAGVSEKLRRVFSKHDIPVYFRPSNTLRQKLVHPKDKTPKHKLNNVVYAVQCSEECPDLYIGETKQPLHKRMAQHRRATSTGQDSAVHLHLKDKGHSFEDANVHILDREDRWFERGVKEAIYVHCERPSLNRGGGLRHQLSAIYNPVLRSLPRRLNAHSHPGPSDLRKSHDRVGPGFTMSSPETLADWDPHPVSHLGSCD
>Penelope-1_CQ_pol#LINE/Penelope 1-1295 via tfasty with Penelope_pol, 1 frameshift. Fragment. [Culex quinquefasciatus]
VQHDIIYSWAEIAPHTQICLDLFLEIVAFLMDASYFVFRNQHYLQIQGTAMGNPASPVFADLTMETLIDNVLHTISCPITTVHKYVDDLFLVIPEDKIEEVLATFNAYHDSIQFTYEVERDGRLPYLDMTLVRQADGTIRTEWYTKEIASGRLLNFLSIHPLPQKINIATNFINRVYNLTFVGGDKDKENEQIVHKYLSLNDYPRSLINRCLNRKNNPNPQNRPNHPNSEELQRYRSIPYIPTLTPRIAKLLQQDYPNIVVAPRSTHTVNNLYTRIKDPIPMLNRHNVIYCIKCDQCECRYIGMTSNLLKNRLSGHRSDVNKLDQLIQSGHTYTDVEVQAHKEKTALVSHCIDTGHRFDTTQAKILDQSFKRSSLPLLEMIWIHNTADTVNKRTDTDGLNSTYAGILHVLHKHKTKTKPQKHTTQSQLNQST
>Penelope-1_HM_pol#LINE/Penelope 7-1217 via tfasty with Penelope-1_NV_pol, 2 frameshifts and 2 stopcodons  [Hydra magnipapillata]
KNSGLFDVTMGAFDGAEVCELVGIFLLFQLSQHLxQDNFGLYRDDGLAVFKNASGHLMDTIKKHIIQIFKNNNLSISIQCNMKVVNFLDVTLNLNDQSFRPFCKPNNELNYIHVDSNHPPSIIKQLPRSIELRLSANSSNETSFRNSAHLYQDALKKSGYKFKLNYIPKLIQPLPKNRKRNIIWFNPPYSKNVSTKIGKIFLDLIDKHFPVGHKYHKIFNRNTLKVSYSCMPNVESIVNSHNRHIMKSIPPESDKSCNCINKSKCPLNQQCLVNNIVYQATLYPGTPDGIEKVYFGVSETAFKLRYANHTKSFNIEKYKNDTELSKEVWKLKENGVLNPTIKWKILKRCRSYNPTIKRCNLCLYEKYFIISYTYDNLLNKRNELVSKCRHKSKFLLSNFDTGD
>Penelope-1_NV_pol#LINE/Penelope 46-2169 [Nematostella vectensis]
MEKFHINYSTKNIPLPSRSDYLQRLIEKTEHFLRRMRWKAHFFLNTDTASTSKETYGFRSTKNPPPVEELKEFEEDMLKMIQSVKFKNLNTPFLGKLKEDTDNIKKEPKLLIPADKTTNFYKLEPATYKNLLEKEINKSYKKAPSETTQSVHKKNKEIATKLDLDDRMDTTANKQAFITLKDHKPNFANKPTCRLINPTKPEIGKISKKILDRINSVIAKKRNFNQWKSTKAVIDWFKAAENKHQLNFICFDIVEFYPSISQDLLSRALDFASNYDEITPDEKEIITHSKSSFLVHNQTPWQKKGNTIFDVTMGSFDGAETCELVGNFLLSQLQDLNMNVGLYRDDGLAITNATPRATENLKKELCRIFNNNGLRITIEANKQVVNFLDVTLDLKRNAHQPYTKPNSSLQYVHRESNHPPSITKNIPAGINRRLSALSSDQASFDQTAPPYQKALDDSGYNYTLRYEPNTVTNRKTRKRNNILWYNPPFSKNTSTNIGHRFLTLIDKHFPKDNHLRKIFNRNTIKISYSCMNNTKQIIDNHNKRIITASSATEIASSAPTTTNNKTCNCRQKDTCPLDGNCLQTSVIYQATVTRKDNNTSETYVGLTENSFKTRYRNHTASFRHAKHRNSTELSKHVWTLKDNMIEYFISWRILSSHSAYNSTTKRCNLCLKEKLTIICQPKLSTLNKRNELVSSCRHRNKALLRNN
>Penelope-1_OL_pol#LINE/Penelope 1-2597 via tfasty with Poseidon_Ac_pol, 2 frameshifts. [Oryzias latipes]
DKAPWIRGETSSNFKNQVQMTAPKPTTMEPTWMNESLHRHVSSNFGNDTLQLVRELEKTALADHKNHLNMRCRQSNMIPKSLQMGKGVKGHRAENIMHRARTQLLKDRIRQTYFIINNLEGKMKNLQDNLAATVTEEVLEKIVGFTRTAQLAQHNKSKQRQIKKFQILTNQQQILKDRLNRESRGNHTKARIDRERWIKNISDRELTQTEKEVLSKGLNFSVTTNHIPVVDLITATETAIKRNNLTGSQAEELRLKISAALSSAKPPPSNLSSDERKALTALEKDHSINILPADKGRCTVILNAVDYEAKVNNLLSDTTTYEALRRDPTSGYKKKVIDCLQRLERDQVIDKPLYYRLYPGNTIPCIYGLPKIHKEGIPLRPIVSSIDSITYNMAKHLATILAPLVGNTEHHVRNSQDFANKVKHLQLDSDETMVSYDVTSLFTCIPTTEAVISVRKRLLQDSQLQDRTNLTPDHICELLEVCLNSTYFQFRGNFYRQRHGCAMGSPISPIVANLYMEEVERRALDSFPGTTPSHWFRYVDDTWVKIKIQEVETFTDHINAVDKNIKFTREDTKENTLAFLDCAVIIGEDRQLQVEVYRKPTHTDQYLLFDSNHPLQHKLGVIRTLQHRAQEVPTSSDGKKKEEQHIRQALRTCGYPKWAFTRSQHTGKQDKKEQEPKGNSISIPYISGLSEKLKRIFRQHNIPVHLKPVNTLRQKLVHPKDKIPSYKQSNVVYSIHCKENCNEQYIGETKQPLHKRLYQHRRANPSGPESAVHLHLKATNHSFEDSEVRILAREKGWFERGVKEAIFVKKDKPSLNKNGGLRFILPSIYGSVLKPKQTKPVPPGSLTAERDDQFGEGVTGSPTPS
>Penelope-1_SP_pol#LINE/Penelope (2-847) via tfasty with Bridge2(Xena)_1-139, 2 frameshifts and 1 stopcodon.  [Strongylocentrotus purpuratus]
HTDQYIAFDSHHPISVKRGLVKCLFDRASRIVTSPQQRMQRRTRVRSALSLNGYPRRFIHNTKNRSSEPRDQKVYKTFTVLPYIDGVSQQLKRRLESHGIRTVFRSDTTLRQQLTRPKDPIPPHRRDGIVYNIPCKGCDRSYIGETARPIKERITEHKRDVRLRRTDNSAVAEHAWDNQHQPDWDGVQCLSQERHWYTRRVKKAINIRLNPNNFNRDNGIDIPEFWMRTIRRHDTRRPASQQRSIPFSRRPEPAXPLIGxVPYASANRPGASANQRPNQRPC
>Penelope-2_CQ_pol#LINE/Penelope 503-1795 Fragment (TIR to pos 502) [Culex quinquefasciatus]
LDMFCEIVEFCVNRSYFSFNGEYYIQKFGTAMGNPLSSPIADLVTEELIDHALEAVNFPIPHIKKYVDDMFLSLPADKIDYVKEVFNSQDNNIQFTVEVEQNRRLPFLDMTLVRQEDQTVRTEWYMKPIASGRFLNYHSHHPPHHKLNVAFNFAKRVKMLSTNLDHNTAANIIRKHLLINDYPKSLINRVISRTPQNQLFEEVNNNTVIDNSENDTAMDASTNNTPIFYSLTNIYGLTQKITKTLHKEYPNIQIAIKNTKTVASLLPLVKDKTPIQEQSNVVYAIPCNDCDACYIGITTTKLKTRMSGHKSNVKQLQELKAKGYTNTDAEISWAKEKSALTSHVAAMDHSFGIDSVRIVDRSMKGANLPILESCHIKNTQHTVNKRTDTDNLHAAYAGILNEIKNIYTRKKNQNKINKNNNSRDNTHTNT
>Penelope-2_HM_pol#LINE/Penelope 3-1943  [Hydra magnipapillata]
TPQCPQQINDMRAFECDLFKLIKNIQFRIVPCSFQNKLKKDISTIRKSTYIYTRADKTSNLYKLSKDEYNKLLMNATTSNYKKTNPIIKDRINKEGKTILKNHEVFNKININSSSNCFITLKDHKPNFLNNPTVRLINPAKNEVGRISKHILSDINTNLRNILQLNQWNSTQNVINWFKNINDKHFYKFLIFDIVDFYPSINEKLLIDSIKFAEQYVSIDADHKSLILHARKSLLFTNDQVWIKKSSGLFDVTMGAFDGAEVCELVGIFLLFQISQFYNKTDFGLYRDDGLAVFKNASGPKMEKIKKHFTQIFKQNNLSISIQSNMKIVNYLDVTFNLNNNTFQPYHKPDSTLNYIHANSNHPPSILKQLPISIEHRLSSNSSSEKIFQKTAPIYNDALEKSGFHTILQYHSNLNSSITNKRKRNIIWFNPPYSKNVITKIGHLFLNLIDLHFPLHHKLHKIFNRNTIKISYSCMPNIRSIINSHNQQILRNKLTDNDINCNCINKTTCPLNNQCLSKNVVYKATLESPNTSLTEKSYIGISENTFKLRFANHLKSFNATRYRNDTELSKEIWKLKDAGNMPIIKWNIIKRCQSXNPSTKKCNLCINEKYFIMTFDSRLLLNKKSELVSACRHRKKFLLSNFDSGD
>Penelope-2_NV_pol#LINE/Penelope 522-2093 (fragment; poor consensus before 522) [Nematostella vectensis]
KDHKQNFENRPTCRLINPSKSEIGKISKQILENINKRLVTKTKVNQWKNTSSVLEWYRQLPSKENSAFICFDVVEFYPSITETLLERALEFASEHVNITTDEGDFITKDKHSLLFSNGVPWEKKSSSTLFDVTMGSFDGAETCELVGCFLLHQLKQIPEINIGLYRDDGLAIMSQAPRSIEMAKKRICKIFADNGLRITIEANKIVIFLDVTLVLNTGKFRPYSKPANIPQYVHSKSNHPPNIIRNIPDSINRRLSEISYDEETFNNAAPQYQNALRKSGYNYLLKFQPRAHRPDAQRRNRQRNIIWYNPPFNKNVSTNIGREFLKLVDKSFPASSTLKKIFNRNTLKISYSCMPNVKQLIDGHNKIILNRRDNEQVEDDRKCNCRKREDCPLNGECLEKEIVYQARVETGDKCETYVGLTANEFKTRWRNHASSFRIESRRNETELSKHIWQLKDRRINYTVSWKIIARAKAYSKESKRCNLCTTEKHFIIMKPEMATLNKRNELVSTCRHRRKFILKFGNY
>Penelope-3_CQ_pol#LINE/Penelope 1685-3532 Fragment (TIR to pos 1685) [Culex quinquefasciatus]
AKATREFLRTRKELVVLKADEGNKTVIMNGNDYKSKMLALLSDAKTYATANRDPTSSIQSKNDEIVKRLKRLDAINDRLENELMSRKALCPRIYGQPKAHKAGLPLRPVVPNMTAPTYALSKFVGQILQSSLQSTYNVRDSYSFCDYINGITLPADYVLVSLDVVSLFTCIPFELVRRDVTFNWSDIQKHTDINLEIMLEIIEFIMKSCYFTFEGKFYSQIFGTAMGNPLSSPLADLVMENLMHAVVKKLDFQPPVLKKYVDDLIVALPLNKLKHVQDSFNSYSQHIQFTYELEENRRLPYLDMVLVRTEAQQIRTEWYRKPISSGRFLDFFSCHTTSQKVNTAMNFIQRVDKLSTNLNTREKMKIVDRELEINHYPKPLRRRLINCQLCNRSSNGNQQQQQQTQQAEPSHQQTNICYRSIPNIPTLSQTIAKTLKQDYPEVRLAFRNTNTVGSSFFSNMKDKVPTENHTNVIYAIPCNECESSYIGMTTTQLKTRMSSHRSDIKRLDELLQAGHTTDDYKIAELRQKTALLEHSIAKQHSFDTKKVRILDQHNRGTALPILEMCHITNNNHTVNKRTDTEGLSIIYAGLLHTLKTKNYKHRKPNTVTPGETEQE
>Penelope-3_HM_pol#LINE/Penelope 3-2153  [Hydra magnipapillata]
LSTLLKSSTKMEKINLKYSIKNIPIPSEKEYKLKLLNKTEMLVKKMRWKAFFFINNYPRNDSNYTDYGIKSSKCPPQINEMRSFEKDLINLVKSIKFCNVNCKFQNNMQKDLKSIRTSHKTLIKADKTSNLYKLSKDEYNKLLTNAITSTYKKSMPELKDQIIKEGKNLLIHHEVYNNIEINGSSGCFFTLKDHKDNFINNPSVRLLNPSKNEVGRISKVILSKIIHELKNKLQLNQWQSTHFVIDWFKKIKNKHLCKFLIFDINDFYPSISENILTNAISFAEQHVIIKNDDKKIIYHARKSLIFNNDEAWIKKRGGLFDVTMGAFDGAEVCELVGIFMLFQLSQHYDKNNFGLYRDDGLAIFENKSGQQMEKIKKHFTHIFKSNNLLISIQCNIKIVNFLDVTLNLIDSSYQPYCKPNNQLMYVHSESNHPPNIIKEIPRTIELRLSNMAVNETVFNNSIIPYEEALRKSGYNSKLTYQPQINKNQKRHRKRKIIWYNPPFSKNVETKIGNRFLALIDQHFPVGHRLHKIFNRNYIKVSYSCMPNVKSLINTHNNKILHSDKNKTSKKCNCIDKNICPLNNQCLFSNIVYQATVSSGDPQCKDKVYFGISETTFKLRYANHLKSFNAPKYKNDTELSKEIWELKSKHINPVITWKIIAQCKPYNQASKVCNLCLREKFHILSYKGENLLNKRYEIISKCRHSKKFLLSLFDTGD
>Penelope-3_NV_pol#LINE/Penelope 1-1101 [Nematostella vectensis]
GLAIMDETPRNIERAKKNICKVFADNGLKVTIDTNKKIFNSLDVTLDLNTGKFKPYSKPENTPLYVHSKSNHPPSIIRNIPESINRRLSEISYDENTFNDAAPQYQEALRKSGYEYELKFQPTPQRTSTQRQSRNRQRDVVWFNPPYSKNVSTNIGREFLKLADKCFPTDHKLRKIFNRNMLKVSYSCMPNVKHIIDGHNKTILTKNELQQTETEKKCNCRKKDKCPLNGECLTQEIVYQAIVKTEEKTETYIGLTANTFKTRLGNHKQSFRNVNRKNDTELSKYVCELKEKREDYFIDWKVLARAKAYSNKTKRCSLCTTEKHLIITKPNMATLNRRNELVSTCRHRRKYILRFNDSRTGNVARA
>Penelope-4_AAe_pol#LINE/Penelope 2264-4594 Fragment (TIR to pos 2264) [Aedes aegypti]
GLYKDIAFLKQCKKHRLTPVSHKVIVKTAKNPDIIKDIEMQLLRRSIKALYGRINVKTLECYSLHLKLAKEFQDNFQIFLTKVKIAEFCESERKRKSLSEKFNKLKYQNPKFSRPSQRPNIHNIDGIVVNRSSEQFTDEQLTLLNKGLTYAIPKKPDTTQTVIDIETAINNNNLQTSQIQEIRTHTANIIRNTNTTPQNKEHNIIKQLNTKPVFYLRADKGNSTVIFDKSKYEEIMQNKIKHGPYRIQRTDPLPGMIRRVDKALKEAKPVLGNVVNSLKESNPSLPRIKGLPKVHKPGNEMREIVSAIGSPTHKIAKYLVQKFQNFPKQFHSKTVKNSKHFTEVIENLKIADDEVLVSFDVKSLFPSIPVKEAISLLEDWLLSQYEGTDWIKQVRTYIKLTKLCMEENYFSFRDETYKQLNGAPMGNPLSPFLSEIFMANLEKRLEDKNQLPEIWWRYVDDVFSIVKKHILPQTLETINKAHKNIEFTYEVEQDNKLPFLDLLIVKEHSSLTFEIYRKPTNTQRIIPNTSNHSHQHKMSSFNHMIHRMLTIPLSETGRRKELNYIFETGQLNGYTRQTIQQLIDKRTREQYKRSLTTLTQEQPTLKHIAVNYNDETKKLRPILRKFGFELVFTSRNNQLQTLLGSTKDPIDSLYKSGVYQITCDHCNKIYIGQTKRTLNTRFKEHVAEVTKAHKDTEKGHVHHFKSKVAEHIYNEQHFLNTKNIKLLRHISNPWKLDVAESIEIFKQNHNKLLNKDQGNGYSWLFRLIPNLHTHNT
>Penelope-4_CQ_pol#LINE/Penelope 1880-4429 [Culex quinquefasciatus]
MHSAKTLNQTTITMATKPSEHNKFIGLKKIIAGIHKDIAFLKKCVEHRVTPTSHKIRTKGHTDSKIIRRVELELVKESIKKLYGRLSIKTLECYSLHLKLAKEFPIEFEAFLTKVKVAEKCESERKRKILDNKFRQLISHIAPTMKPVVKPLEEFVVNRSSETFSEEQLTLLNKGLKYAVSSKPNLENIVIDIETVINANSIDEKQTKPPPLLPAQINSVRMTVSKLIREATTKHQDNAEVRVVKELKEKPVYYLKADKGNRVVIMDRDEYDKELLEKLGNREKYSLQRGYTLIDMVKKVENTIKECAGLLKSVGKTAKSLRVPNPTLPRIKALPKVHKPGNEMREIISAVDAPTSRIAKWLVEEFKSMPKPFPSRSIISSQVFTKELLESGPIAEDEIMVSFDVTALFPSIPVKNAIGTLRDWLQSQYEGEPWRQKTIQYITFVKLCMEQSYFQFRDCIYQQRMGASMGNPLSPFMSDVYMAALEHELQTKNLLPERWWRYVDDVFCIIKRDSLTTVLDTINSARRSIKFTYEMEVEGKLPFLDILILREPGCPSSFSFEIYRKPTNTRRTIPATSNHSFQHKMAAYHYFIHRMTTLPLSEAGKQKELEYIFETAEINGYSRTTIQAIIDKKERKLHRTSLTTLTPSAEPLRRAAVEFDYRITRPLRQKLAKFGIDLVFSSRNSQLESILGSTKDPIPTLGKPGIYEVSCGHCDMSYIGQTKRLLQTRLDEHIHTYVKIAMEEKRKGFVPHFKSAVTEHIIEEKHNITASDAVILRHITNPSKLAVAESLEIFKAGNKRLLNKDSGNGSTWLFKLLPIQAQKKNEEVVPTVTTNTDTPAMNLQSRTEH
>Penelope-4_HM_pol#LINE/Penelope 1-2135 via tfasty with Penelope-1_NV_pol, 1 frameshift.  [Hydra magnipapillata]
SNSSKMEKLNFQYSIKNISIPSRKNYILQLMAKTETLIKRMRWKALFFINKQTDEKNSEDYVNYGINSSKCPPQIKEMCSFENNLINLVKTIKFRKINNVFQKKLANDIKSIRTSKKTLTLADKTSNMYKLSKDQYNHLLNNAITSTYKKADPKLKDQINIQGKQILINHDVYNKIGINGTENCFITLKDHKENFLDKPTVRLINPAKNEIGRISKSILSNINSELRKKQFLNQWQNTQNVIHWFQTIKEKQFCKFLVFDINDFYPSINENLLKNALSFAEQHLIINSEQKSFIYHARKSLLFSNGTAWIKKKGGLFDVTMGAFDGAEICELVGIFILHQISQFYDKNNFGIYRDDGLAIFRNKSGQEMEKIKKHFVQIFKNNNLLISIKSNLKIVNYLDLTLNLKDGSFKPYRKADNILNYIHTSSNHPPSIIKSVPKTIELRLSAASSSESIFKESIPPYQEALKKSGHTCELAYHPSIKSSNNNHKRKIIWYNPPFSTNVVTKIGKCFLNLIDHHFPVNHRLRKIFNRNTIKISYSCMPNIKSIINSHNKNTLHEEAKVNEKTCNCIDKSKCPMNNHCLSNNIVYQATVCSNNPEYKEKVYFGLSETSFKVRYANHLKSFNSIRYKNDTELSKEIWKLKEKNFTPFVRWKIVKHCKPYNPTSRVCNLCLNEKFQILMYKGKNLLNTRSEIISKCRHKNKFLISSYDTAD
>Penelope-4_NV_pol#LINE/Penelope 26-2902 [Nematostella vectensis]
MEEGFYKLINLKKKRSRYLHHYHFLADCQLLGVVTKGLIIKKTANIGHISDGFRDLWDSTLYECSSRLQVLLLQETSKVLDGVTEKIERLESQLDEGHMSYYQNFCLDILPNFEDGLNKKHEQKLDALLSFYRREIVDVMETTVDHKDIAFDASHEVIAMNSEEQDYMVDGGAEHEAHSMDNIIGTLSGSIPETINTNTVTSTVGESTMGLNVVVNLSSRELSRGEVALLSKGLKFCPTPNELDVFALRKDINDFVRRIRLREFFYDPDAVDADFSETPAFRKKSSWCPEKGREIAIEAYAKALEEEILSSTKQGKIYSNLTQDERRALKDLRYAKDIVIKEADKGSGVVVMDKDKYIQEALRQLSDKEVYKETKDLTQYITELVNRRVRKLSADGFIDDKTLDYLIINGKPRAGRFYLLPKIHKKGNPGRPVISGCNTCTEKISEFVDYHIKDLVPSIPSHIKDTKHFLNIVRDMGTLPQGAILVTADVVGLYPHIPHDEGLEALKAALDKRGKLTGNYIPTEDLVDLARIVLENNNLVFNKKHYLQVLGTAIGTRMAPSYANLFMAKVEKEIIDSSPVKPYLWRRYIDDIFMIWTEGEDALREFMAHMNSIHRTIKFTFEWSTSQVNFLDVSLTLRDGFISTDLYSKPTDKHQYLFHTSCHPSACKKGIPFGQALRIRRICSEDSSFEKRVLELQGYLVDRGYDSRFVGREVDRVRRIPRDDTLKDRRKGKNDRVPFVVTFHPALPNLPGILRNLQPVLESSSRCRGAIGRVPMVAYRKPRSLKDMLVHSSLKEDSTQVRGCGKCGGKRCRVCNFLKTGREFRSTVTNKKYVINFDLDCNSDFVVYLITCSMCSKQYVGSTINSFRKRFNNHKSRLNKHPSLPVSERVKDDLIYQHFHCDNHLGLNNVMVQLIDKCNSEAQLREREGQWAYRLKSIYPRGLNSDDFFCSRNPRRDV
>Penelope-5_HM_pol#LINE/Penelope 4-2015 via tfasty with Penelope-1_NV_pol, 1 frameshift.  [Hydra magnipapillata]
FFINDDQNSKNNFYYNNYGIKTPNYPKQITEMCAFESELIELIKNIKFRKVYSKFQKKLKEDISNIRNCNLTYTFADKTSNLYNLSKQDYNHLLTNAVTSTYKKSDPKVKNDINKEGKRILQNHEIFNKIDINTSSNCFITLKDHKENFANNPTVRLLNPAKNEIGRISKVILSNINSELVKRLHLNQWKKTQDVICWFKSISDPNLYKFLIFDIVDFYPSISEKLLKNAISFAEQRLIIDPEQKSIIYHARKSLLFDSDQVWIKKSSGLFDVSMGAFDGAEVCELVGIFLLFQITQFYNKNDFGLYRDDGLAIFKNISGPHMEKIKKHVVKIFKSNGNDLLISTQCNIKIVNYLDITLNLNDHTYQPYSKPGNSLNYIHAESNHPSSILKQLPHSIELRLSANSSSEEIFQKSTPMYNEALKKSGFNYNLSYQPNLILSHTKNRKRNIIWFNPPFSKNVSTNIGKIFLTLIDKHFPKNHKLHKIFNRNTLKVSYSCMPNMKSVLNAHNRHVINNKKESAENNCNCIDKNTCPLSNQCLTKNIVYQANVCSNNLVQTPINKFYIGISETSFKIRYANHIKSFKIPKYKNDTELSKEVWRLKDENLNPVVRWKIIKQCDAYNPVTKRCNLCLNEKYEILFFKHPNLLNKKSEILSKCRHKNKFLLAQFDTGD
>Penelope-5_XT_pol#LINE/Penelope 37-2541 [Xenopus (Silurana) tropicalis]
MTWMNENLHRHIATHFGENTLKLVREYERTARKLADYRNHLRFNLRCRYQGITPCSLRLGSSVKGHRAKVILQKAQKQLLNERVRQTNFSIEVLVHKFDNAKQRLTAKLPVLTLQRVVEFTERAQLAQHAKGKERQINKFTSLLSRTNNTQRTDKSTGRKEDENKTCQNIKDLWVKNLSDRELTEPEKDVLAKGLNFAVAPRYVPVVDFITATESSIHNNKIPVDEAENIRLKVSAALANAKAPPSNLSLQERRALTSLAKDSSVTILPADKGRCTVVLNTSDYHAKVSTLLNDSDTYEQLKRDPTSNYKKKVIDCLQHLEKEKVISPALYRRLYPGEATPCLYGLPKIHKEGAPLRPIVSSINCVTYNIAKYVANILAPLVGNTVHHIQNSMDFVKKVKELKLEIDDTMVSYDVTSLFTCIPTAEAIDTVRKRLKQDTTLSSRTKLTPEQVCSLLDLCLNTTYFKHKEVFYRQKHGCAMGSPVSPIVANLYMEEVEKKALDTFKGTTPSHWFRYVDDTWVKIKEREVPAFTKHINSVDKNITFTREDVKDSKLAFLDCAIVIKEGRDLDIEVYRKPTHTDQYLLFDSHHPLEHKLGVIRTLHHRAETVASNAEAKEKEYKHLKGALKTCGYPDWAFIKTKSKTNRKTRPTNRREEHSRRNNIVIPYVAGTSEKLRRIFNKHRIPVFFKPSNTLRQKLVHPKDPTPKHMKSNVVYAVQCSEECSDLYIGETKQPLCKRMAQHRRANSSGQDSAVYLHLKEKGHSFEDSNVHILDREDRWFERGVKEAIYASLEKPSLNRGGGLRHRLSPTYNGALTSLPRQFHNSSHFQSCTLKD
>Penelope-6_HM_pol#LINE/Penelope 203-2035  [Hydra magnipapillata]
KDIINNXKSHKTLTHADKTSNMYKLSKEDYNNLLTNAITTTYKKANPKLKDHINKEGKQILTNHEVYKKIEINGSSNCFFTLKDHKENFANNPSVRLLNPSKNEVGRISKVILTKINCELKNKLFLNQWQSTQNVLDWFKKITNKHLYKFLVFDVNDFYPSIKESTLNNAMNFADHHIVIKSEDKALIKHARKSLIFNNDEAWIKKRGGLFDVTMGAFDGAEVCELIGIFILYQISQHYNKEDFGLYRDDGLAVFKNKNGQQMEKIKKHITLIFKKNDLQITIQSNLKIVNYLDVTLNLSNDTFQPYFKPDNQIRYIHSNSNHPPSIIKAIPRNIEQRLSSMSINEKFFKKAIPPYEEALKKSGYKSNLTYQPQIISSQNQQKKQRKRNIIWYNPPFSLNVKTKIGNRFLALIDLHFPAGHKLHKIFNRNSVKISYSCMPNLKSIINSHNFKILHNKNQLKTNQCNCVDKAFCPLNNQCLSNNIVYQATVSSSHHDRNKKVYFGISNTPFKLRYANHLKSFASIKYRNDTELSKEIWSLKDQNIKPIIEWKIVKRCKPYNLATKICHLCLYEKYVILSHNGKNLLNKKNEIVSQCRHSKKFLLSLFDTGD
>Penelope-6_NV_pol#LINE/Penelope 3-959 [Nematostella vectensis]
ISETSVTFLDISLSIKDDHLATSVYYKPTDSHSYLLFSSSHPKHVKTAIPYSLFLRLRRLCSDDSDFHSQSEKMCQFFSDRGYPAHVVTNALDRARSVDRSVALQPSKPKSEDRIPFPLTFHPSNLAIKHLVSRNFKILQEDPETAAIFPQPPLFSFRRDKNLRSSLVRSTLTPDNLEPGTFKCSRKRCTTCDYIVPTTRIIGPNGESYSVTDHITCTTSNLIYCISCKLCGMIYIGETGRMLGTRFCEHRNDVINRRTFKPVSRHFNLPGHSVHHLSICGVSLHNGSNDSRIQKENRIIFSLGCRAPLGINEKLSFA
>Penelope-6_XT_pol#LINE/Penelope 2-2311 [Xenopus (Silurana) tropicalis]
KGHRASNILQKAQKHLLNERVRQINFTIEALKQKIEQLKQSLTKQLPDVTLERVVQFIEHAQMAQHIKSKERQISKFTSLLSRSSGLKRTEELTWRQKDETSKNTKDTWVKNLSDRVLTQPEKDVLAKGLNYAVTPQHIPVVELITATESAINNNHIKVEEAEQLRLKVSAALSSARAPPSNLTTQERRALTSLSKDPNITILPADKGRCTVVLNTTDYHCKMTSLLSDSNTYEPLRRDPSSSYKKKVIDCLQQLEKEEAIDRALYHRLYPREATPCLYGLPKIHKDGAPLRPIVSSINSVTYSIAKYLANILAPLVGKTVHHIQNAKEFVTKIQGVKLEAEETMVSYDVTSLFTCIPTTEATETVRNRLQKDNTLSSRTKLSPNQVCLLLDLCLNTTYFKYKDQFYRQKHGCAMGSPVSPIVANLYMEEVERKALLTFNGTTPSHWFRYVDDTWVKIRSNEVAAFSEHINSVDNNIKFTREDVHENKLAFLDCLISIQEGGILKTEVYRKPTHTDQYLLFDSHHPLEHKLGVIRTLHHRAESVTTDTESKDKECKHLRGALKACGYPDWAFVKTRATKPNRNTKRNNRPEAERRRNIVIPYVAGVSEKLRRIFNKHHIPVFFKPSNTLRQKLVHPKDPTPKEKQSNVVYAVQCSEECTDLYIGETKQLLSKRMAQHRRANTTGQDSAVFLHLKDKGHSFENSNVQILDKEDRWFERGVKEAIHVKVEKPSLNRGGGLRHHLSATYNAVLTSVPRQFQNSSHIHSCNSNK
>Penelope-7_HM_gag#LINE/Penelope 28-885  [Hydra magnipapillata]
MSAXKQFSDYSDKLYEVIFNKLKDTLHLIISDIKPLIRETIESTLKECLSIYQQHNTTLHDNVEKEYMKFKNQHQRYFIKSLEKHEYLYYKHSRCTNLLNIYHDCLQQEPLFIPKKFRSDNFHFMSYDEKNAIKKFELQRLKSECEILTIRKDNFLSSLKNLEDEVTSFINNHASSEEVKEKLVFRYEECKKEDIDRIDKKWAKKLASTKTAYEKDRNNQNSKNLQNNEQEDNHQNHNIDCSTSSSSTNINNNHNQTSDIITSKNWSSPIQKKYNLRSSTYQLNT
>Penelope-7_HM_pol#LINE/Penelope 816-3117 via tfasty with Penelope1_XT, 1 frameshift.  [Hydra magnipapillata]
KKLVKPNPKKIQPKVINLSTKHLTTSQISLLTKGPKFCPTTKGNILHIDSDIKQFTRKLILKEKFHGTENTDISIIKKKSNYNIKTTLPYLDEIISKIEQIKPIKMQSVDNITQQERIALKDLKEMKNIVIKKADKGNTFIVMDSTYYNEKLVHQDHLLSANTYERTKPESDKIVFRDLIKMIGKYNFLTKNEINYITNFKWKSSSFYITPKIHKCQEIIDKVNASNSLYIEMKPPNDLKGRPIIAGINSPTSHLSQFLHIILSPIVTKQKTFIKDDWDFLRKIPRALNSDSCILTCDIVNLYTSIPHNLGIEALKYWIEKHKSLIDKRFTPEFIIESTYFILKNNNFLFNDQMFRQIIGTAMGTNFAPDYACLTIGYLEETRLFPKILPKYFSSKDVNDIQEFYYRYIDDGFLIWPKHLDIVKFKNSLTEIDNSISFTTDMGKEFIIDGNTYNIINFLDISIILENNRKIKTDIYYKETNTHDYLNYNSHHPYHIKKNIPYGLAKRIIVFTSDYNKEKQRLAELKTWLKECEYPNNIIEKAFHNAKLQGPAPQNQSKEIFPLVTTFYSNLNCQPFITETNLLLNLSSNERVKEVFSNVQPVIAYKQPPNLLRTLTSSKIQSTTKEVGLFKCNDNRCKICKFYLQEVNQFTTSNGTIWNIKSHITCNSKNVIYYLKCLSCNKKATYTGKTNNLRLRTNGHISSCRTGQSTDRFDNHVYNCQRAHNSVIEPFFQLFVFVELKNEKNLISYEKHFHNQKHDTFNCVYITI
>Penelope-7_XT_pol#LINE/Penelope 225-2101 via tfasty with Bridge1_TN_pol, 1 frameshift. [Xenopus (Silurana) tropicalis]
VLAKGLNFAIAPKTIPVVDIIAATEASIHNNKVSQNEAEQLCLKVSAALASAKPPPSNLTSQERKALTSLKKDSKITILPADKGRCTVVLNTSDYHAKVTTLLSDNNMYGALRRDPTNSYKKKATYLLKQLQEDEAIDWAMYHRLYPGETPPCIYGLPKIHKEGAPLRPIISRINSVTYNVAKYLANILAPLVGNTEHHIQNSQDFTNKIQGLVLGTEETMVSYDVTSLFTCIPITEAVETVRKQLLKDNTLGNRTKLNPEQVCSLLDLCLSTTYFKYKDKFYRQKHGCAMGSPVSPIVANLYMEEVERKALDSFKGITPSHWFRYVDDTWVKIHTQEVQTFTEHINTVDHNIKFTREDVQDNTLAFLDCLVRVREGGKLEIEVYRKPTHTDQYLLFDSHHPLDHKLGVIRTLHHRADKIPTSTEAKVKELEHLRGALKTCGYPDWAFVKTSRKRSNNTKTTGEGGKHDRRKNLVLPYVAGVSEKLRRIFNKHRIPVCFKPSNTLRQQLVHPKDPIPKHKKSNIVYAVQCSEECSDLYVGETKQQLHQRMAQHRRASSSGQDSAVYLHLKEKGHTFEDCQVQILDRENDWFKRGVKEAIYVKTEKPSLNRGGGLRHLLSATYNAVL
>Penelope-8_HM_pol#LINE/Penelope 49-1920  [Hydra magnipapillata]
TIKFRNLNNTFQEKVNNDIKSLRKSNKTLTPADKTSNMYKISKDDYNHLLKNAITSIYKKADPKLKNVVNKEGKQILKNHDIFNRIEINGTSDCFITLKDHKDNFLNNPTVRLLNPAKNEVGRLSKLILSNINSELRXKLCLNQWQNTQNVINWFQKIDDKHLRKFLVFDVNDFYPSIDEKILNNAITFAEQHITIDEQSKSIIHHARKSFIFNDGVSWIKKKAGLFDVTMGAYDGAEVCELVGIFILDQLSQFYNKNDFGLYRDDGLAVFKNKNGHQMEQIKKHVVQVFKRNNLNISINCNLKIVNYLDLTFNLTQNSFQPYCKPDNKLSYVHADSNHPPNIINNLPKNIELRLSANSSSEVIFNKSTHLYEDALKQSGYDYKLAYKPSITNVPKNHHKRSIIWYNPPFSKNVTTKIGQRFLTLIDKHFPKDHNLHKIFNRNTIKISYSCMPNIKSIINSHNKNILYGDVKLSEKTCNCIKKSLCPLNNNCLSNNIVYQATVSSNKPQYKDKVYIGISETSFKLRYANHLKSFNIKKYKNDTELSKEVWDLKDNNFTSSIKWNIIKRCKSYNPASKICKLCLNEKFEILFYKGDNLLNKRGEVVSKCRHKNKFLLSLFDSGD
>Penelope-8_NV_pol#LINE/Penelope 3-947 [Nematostella vectensis]
SHLYLPPTSCHPEHCKRAIPYSVALRLKRNCSDENFLCRRNNEYKNYLIEQGYKPELVSSKFNEVASLSRSELLKPKSNRAKRKVTPLVMDFNPNLPDIGQIVRKNLSFLHSSTFMKEVFPEGSIISAFRRPKNLKDILAPSKFKQRVATEISNQENNSGCFKCGKKCDLCSSYFVQSRHFISAATGKKYFIRQRVSCNSKNAIYLATCRKCNLQYVGSCTTEFKVRFRNHKSSMRTNKKTCEVAKHFNRSEHNLSDFDFIVIETIARQDLIGLDSVLLNREAYWMMQLFTLAPHGLNKRREYKSKNRIHFNNT
>Penelope-8_XT_gag#LINE/Penelope 64-1074 [Xenopus (Silurana) tropicalis]
MVDLNSRRSFRLKILQDCENHTQENTTVEGERFDFENCWFKYERFLEKEIKCWWEITSLEKYIKHKIIPRGLRINKRPAFEDGSLDFKRRWDEILNQSSIQLMELLIKEKQNKLRQLEEDIKQQKEKMMGMEKLPIYQDSVRELDTNLNTIDKEIADRKFRKFERDRGDYTNGNIYDWHQSRVKHTRENESYKTNKHRFPRMEKETKWSKTKTNQLPNMKVLNIKQSRDKKDIGNIDRIGGVEKGEKRLGTPLSNSNTNRFAPLTEKPIGSLRHSPTDAQSTPFPEKKKTPRREYPRDAWDARPKFGPQPKRMRRWEENLSLNLEERGPEKRPNYGN
>Penelope-8_XT_pol#LINE/Penelope 960-3836 [Xenopus (Silurana) tropicalis]
MGCTSEVWTPTEENEEMGREFVPKSRGKRSGKKTKLRELKEFVKNINPENLYRYGIYNLSGVCLTLGQISLLNKGLNFSPRSSVDRFNFFVDFGLFIRRLSIKRFFNINNSRKLQVPQRGESVLKEGIRCELLSRELSGLIDMHSLLSESLPIEGLKVSTNVRGTSKFYPCETKGPYISLFEKLVSRELLESKDLFWKDNLTTLEREAMRSIQNNSEIIIRPADKGGGVVIQDIEDYLGEAYRLLRDSSTYRKLEKDPTKEFQVELFVILRKAFCNNIIQQKEFDFLWIKNPKLAVFYHLPKIHKKLLNPEGRPIIAGIDSLTSKLSLFIDLFLQPVVPCIPSYLKDSGAVMEILNGITWESGYVLVTADISALYTSIEHSRGVEGVIRILEKFNFPERKQREFLRESMLFILRHNYFKFGKEFFLQIRGTAMGTRFAPSYANLYLGDWEDRFIWGPNRSPALKVYRRYIDDLLLIWDTKIASLDDFFMTLNDNDDGLKFSFKCSDISIEFLDLEIFVQDGKLCTKTFFKEVDRNTYILNSSHHKDTWLKNIPRSQFTRIRRNCTNDYDFMEQSIFLFKRFVEKMYDKEHLIREFVKVAGDNFSVFLPRLGEVFRADQIGIISSVEMVDLQIKNNLDLFLENGDDSVVYDRYQPMTKGNKVRYPKSNHKKVWREMRSGIRSQEKEVKNKRKKFFINKIDSVDVIQTTVNEPSNEYGELALVVQYHYKLSEILSILEKYWPILLHDPFLKNNLPKHLPVIYKKNKTLRDILAPTVLKQHRKNFMLERESILNYFPSTSNIKKDRPNNMTSRGWHICGNCSQCNYCPKKVSSINYYNSEKKYLIKGHISCWSQYVIYIVECSCNRKYVGRTIRSFRTRLYEHIRKIRLGSTEIPLYKHFKDIHASDVRHLKAWAIEHVEVDYRGGDRLTTLDKRESFWMFSLNTFEPIGFNENWNIKSFLS
>Penelope-9_HM_pol#LINE/Penelope 2-2051 via tfasty with Penelope-1_NV_pol, 5 frameshifts and 1 stopcodon  [Hydra magnipapillata]
LTEKVELXIKRMRWKALICEKNLNQETDYHFNFKTRKCPPQHPDLVNFENDLLKMIQNISFTNSQPFQKQLNNDICKIKSSENVFVFADKSHNIYELEKSSYNKLFNENVTRTYKKSDNSQYNNINNAAKIIAKNLGIDDRMECLAMNTAFITIKDHKDDFANNTKCRLINPSKPELGKVSKILLENINNKVRKATLVNQWHNTDDVINWFQSILEDKQNCTFIQFDIEEFYPSISKELLQNSLNHAKQFTEISEKTLDIINHSRKSLLFTEHNSIWVKKLGDPNFDVTMGSYDGAEVCELVGLFILHTISKDYGLKTIGLYRDDGLCCFHNINGPQSERIKKNIVNLFKEKFNLKITIKTNLKIVNFLDVTFNLSENTFQPYRKPGDHPLYINVNSNHPPSIIKSIPTMISNRISNISSSKEVFDRATPFYNNALKASGFKEKINFTPNIQKYKNRKSRSRNIIWFNPPFSQNVKTNVAKTFLNLIEKRFPKTHKFHKIFNRNNLKVSYSCLPNINNIITSHNKKILSNVSHENANQTCNCRQTTLCPLKGKCLTKNIIYSAMxKHHQEEEGYYYIGLTENTFKDRWYKHKNSFQYESKANSTELSKYIWELKNKGIFKSFFTWKIIDRAEPFKPGGKLCNLCLTEKYHIITSPLKLLNKRNELISKCRHENKFVIYNFNVI
>Penelope-9_XT_gag#LINE/Penelope 47-947 [Xenopus (Silurana) tropicalis]
MASLWAIYMQFDELCFFHYFIFGETTVLERQEPTTRSSSGYTELPAPLIPTTHWLMEGSSSQLTFEVDTSTDFTFTPQDVDKILFTETPLDLATNKPDIDIYHDLLNLKKKELDLQLHGIYLSNYHRQRLIPRGFRINNIPTIGRSNPEFCSKWCGILNHCSFDLLLLVVEQVGKELVSIRADINTLELQHLESLRADTTSDWIHKLQTNIDKYKQDLTNFKQKKLHKVADDYKHKRVYGWLLGLRPGDQGRRPIRRKRLPRSLTTVDSSDQSTDSDTVNTDNPGNRPFLGVTTRSRKEGG
>Penelope-9_XT_pol#LINE/Penelope 907-3240 [Xenopus (Silurana) tropicalis]
TFFRGNHKIKERRRRPTRRGGHKRKGETTKGEENIVFNLSRHILTPGETSLLCKGLSFVPSTIPNTFDTLVDIYKFQRKLRLKEHFRNTPRDIQPPFRAKSHFEPPNTPAAVRTFGKVLNLEAKATAKMARSYPNLSIAERQAIKTLQEDTNLVIRPADKGGSIVLLDYGYYRDELLGQLRDSTTYKLLPGDPTSKFKRELDSLISSALNAGWIDLDTAQYMNTEYPRIPIIYTLPKIHKSLSAPPGRPIISAVGSLYQSVATYIDSFLQPLVKSMQSYTRDSTHVIQRLRDLSDIPDNSLLVTMDVKSLYTVIPHDQGIWATRKALLHNPPINPPIEFLLQLLELTLTRNYFRFESSFYLQVSGTAMGSALAPSYANLYMHYFEEAYILPLLGKSILSYFRYIDDLFLIWKGDLDSLLQFHMELNALDSPIKLTLNYHEDNVDFLDLNIYKTESGLGTRLFRKSTDRNSILHAKSHHPPATIRGIPYSQFLRVIKNNSSPNTAKIQLDEMYHRFLERGYTDTQLQPQMQRALLHTQDELISQRKPEVSQTPPLIFTTTYNATSSSLSKSIRRNWPMINQDETLSLHLSDQPMLGYRRGSSLRDRLVKTDFKGPPKTXMDWLSKQKKLGCYKCPDCTTCRCLLTGPNFPHPLTGKRLRINHRLTCTSTYVIYIITCPCGMYYVGKTITTLRDRIANHRSAVSRALKDGKADQPVARHFLNMKHPLPTFRCMAIDFQPPLSRGGNRELALLQRESRWIHKLDCVSPKGLNETLPLGCFI
>Penelope-10_HM_pol#LINE/Penelope 1759-3687  [Hydra magnipapillata]
DQQRKLFTPSNEKRNFTPFTLAKLFSSTPHSNMRQYNKEIIQAKSNFSHLFYNKLVTNISKHVLTDDEKELLILGLNFIPSITNTSLNMHITAFERFKTTLLQQLYFGTEEIMRHPFHKKSNWSPPMTKNKTIINYLNLVECDITALIFSQLPKDKKNLTPKLIHALNSLMFNPTIIIKKADKGGGICILDKTDYEEKISLLLSDKNTYKLLSEDPTKSIARDVNNLIDYMFLHHMIDKKTSEFLRPKTPHRTPLFYGLPKIHKIGTPLRPIVSGCDGPIDNLSFFITEFIQPVAEQLPAYFKDTTHFLKLLQSHVLETNNYILVTADVISLYTNIPHREGIDAVKFYLKRAPPFNGPIKRPPIAFIDIILETILTHSNFQFSTDHFLQLTGTTMGTRMAPPYANLFMGRIDEKIIDQFSMWISFYKRFIDDIFFIFHGPPEILTQVFEFMNAIHPTIKFTFNNSTTSIHFMDLTINKKLDGQLETTIYKKATDTTALLHYNSFHPPHQKSNLIYSQALRYNKNISNNYNLIKELKQLAQILVIRGYPIQSINKGFKQALRHTQHELINNKYKEEREKEKILPMVTTFGKVGKLINKIVKKHWNIVEQDTDLKNIWPTPPIASFKNIKSIKKFLIQTAHKKT
>Penelope-10_XT_gag#LINE/Penelope 3-821 [Xenopus (Silurana) tropicalis]
MDMTYLGRNMERKMKREARLWWDVCSLENYIKCNRIPRGLRIKKFPSFSDVPRDFVTAWNLVLTDCSMKLMELILSYDRKELDIVQKEIADLHQNARPYVDAHDATLLDKITEQVKQYEFVVKNAKREKFLRDKRDYENDTVYMWNTHNYDTSFSQRYSGRVNKRRGGLPHPILKSSKSVQFVEHDARPHGAQESRSVSPSSFLMSDPDLSGSDPDEGQESNIRSGKRGNVSTPKKEPPRPYSYRSTRGEVDDAVGQQGYIKRSARNRRPPRW
>Penelope-10_XT_pol#LINE/Penelope 1058-3520 [Xenopus (Silurana) tropicalis]
VINLSSRSLSLDESNLLSKGLNFIPDEKLDIFSIILDLNKFIRLLTVKRHFANQDNMKVSGVHNNVDMADSLSQESLGVGQSLIDVSEGTGMQVALDDFRDFCALSDLQDLEAEGSISSGEYPHKLVTVSGMKKNSEFYPIQAKSQQLIMFHKLVQNDIEALGSNLGKNKSKYGNLTPGEYKALHALSRDDTIIIKKADKGGSVVVLDTPAYVAEVMRQLTDVETYTLLKRDPTEGFKSVLADLLSEGFSNGVLTTKEVEMLKCENPVIPVFHVLPKVHKSLDNVKGRPIVASIGSLSENLSCYIDRLLRPLVESLPSYIRDTTMCINQIQDLKWKPSYRWFTMDVVSLYSSIDHSLGLQAIGYWLDKERIFPKAQSDFILQAVDFLLKSNYFLFDGKFYLQRCGAAMGASFAPTYANLFMGWFERLYIFGDQNPFRSRIFSFFRYIDDCIGVWDGDDDTFSHFVAYCNERVSGISFTYETNKVCISFLDVNFSIQDGLIHCDLFRKPITRNTLLHSKSAHPASCLGGIPVGQFLRLRRICSTWDAFQRQAMALWDRFLERGYTPGVIKAAYERAVSSDRSTLLRPKRSDTQNVNGKEKSKTRFSMVYSKNAHLIRKSICKYWGILLQDPILAKILDKEPSFVYRKGRDMTSWLSPSLYTSKKRTIPWLNYTGNYRCGRKRCKACHFLNVSKKFISTHTGAEFQIKQYFNCLSKEVVYLITCSCGSQYVGKTVRNVSIRILEHVSAVERGDLRSAVSKHTIEKHAGKVSFTFQIIDKVSLQARKGDLEKRLLKREAFWIYNLHSLEYQGGMNREWELSCFY
>Penelope-11_HM_pol#LINE/Penelope 598-2505  [Hydra magnipapillata]
MPQWAGKLNANYNKQLKEKINITRTNMQNKTITNISGTQLTKNELTILNKGLKFIYSPQEPDFDLYTKQIKKFKRHIYCKMFFNKQHPTSQNPTKKDRTLKRPNPNWNPLADKNMKLKRYMTIIDRETERIMKDPTYTNANNTTINERKALYKLRRNKSITIKKTDKGGGICILDKKTYEEKILQLLEDKNTYDELPNDTTEMVTDKIINEIIMMRNARAIPEKVANFILPNTPSRTPLFYGLPKIHKQGTPLRPIVSGCDGPTDNLSEYVVKYLQPMAETLPAYFRDTTHLLRLLSDINSPESPITLITADVTSLYTNIPHNDGIQTIKNFITEHLHTIKFPPELPPIIPTRHFCHLIELILKNSSFMFGDRAFRQKFGTSMGTRMAPPYANIFMSTFDKTIHNKFKNSILLYKRFIDDILIIFTGTTQQTEELTTYANTLHNDIKFTFNTSNDKINFMDITLQINKNNNTLTSKLYRKPTDTLSLLNFHSNHPRHQKIGIIYSQALRLNRLISDEDELNKELKNLTITLVTKNYPLNVINHHISRALLKTQTELITQSKPLKLQDNDDTTSNQIPIILPNDNIGRELAQMITKHWAIIKNDPDLNTILKPALLKVLSNHKSLNDLLISTRHKA
>Penelope-11_XT_pol#LINE/Penelope 1-1605 [Xenopus (Silurana) tropicalis]
FQPLACYVDMALQELTPLLTHCLWDITQFLNVIGETVPPTEDFLMCSLDVKDLFTSIPHSDGIECVRMYLSRTNLPNHKINFICELLEMVLVKNYFQFNNEFYLQCQGCAMGANMAPIYANTFMDFIENTHILVGEYAQYIHTYVRYVDDTFLIWTGTVSKLHDFVEHLNNVHTTIKFTLEFHPNTLHFLDVDIMYMNNEFVTTVYKKPTDRNNFVQSKSFHPPGLLTGLPKSQFLRVRRITSNDALYDIEAEKMMSKFIEKGYDVASLRLINEQVKAMPREELLKKRKRENKKCQQSVFVTTFDNNAGLIKKTVLKYWGVLKADSKFGKLFNNPPMFSYRKGKTVGELVKSRVTCRKMNSELIEKGGTYPCVNCSHCNGIIRGANVIHPHNGSKMPIKGTFDCTSKNVVYYIKCPCGLGYVGQTSRAVRVRLNEHKSTIRNYKPPVSMVLEKGKENEPVKKLGKEKRETTLAKHFFECGHQVSQLRWQILEQVKGREDHDIKRRLLQRECYWIWALKTKYPRGLNEECIMSCFL
>Penelope-12_HM_pol#LINE/Penelope 1621-3555  [Hydra magnipapillata]
NNGSIFTPTDEPRTFTPITMKDLFDMHNIRGSFHYKIRVEKTRATAEMINRMITNKSDYDLTEAERQVLSRGLGFIQNDQYVPEKTFKDAISKLKRNMLLRVHFKDNGGLPRQTPMKRKLDTVWNPPASNNANLNLFFERIKSETDTVLNERMNIAHPNLTKNMKEAILTLKNNNNIIIKQADKGGSICILNRRDYEEKINTMLADDTTYKLLLYDPTIEMARNVVSTIDYILFKGVIDEKTANYIRPNNPCRPPLFYGLPKIHKTGIPLRPIVSACDGPTDHLSYFVTKFIQPLAETLPSYFRDSTQFLHMLQNQPLPPQKYIFVTADVTSLYTNIPHKDGIEAIKLLFNKIPHDLRPPNSPPVAYIQIMIDTILTNTTFQFDDRNYLQMTGTSMGTRMAPPYANIFMGTLDEAVTGQFKDSITFYKRFIDDIFFIFTGTIEDLEHVITFMNNLHPTIKFTFNHSDISIDFMDLTLYKNHLDKIQSTIHRKPTDTMSLLHFSSYHPHHITSGLIHSQAIRYNRLISDSHHLYKELRTLARQLVLKGYHLDIINRNITKALLHTQKDLIHKNKEADDTHIFPIVTPYNEQGIRINNAILHNWHLIHNDPELCTLFPPVPTLTHTNTLSLRDRLIRTKYTANHNN
>Penelope-12_XT_gag#LINE/Penelope 542-1297  [Xenopus (Silurana) tropicalis]
MSLRIGSQAGGEPLTFNVRERNERRKENLCQIFSNPITANLSLLSSNNKELLRNLKDALLQQTKSWWNKSFFEQYVKQGLVPRGLRIHTYPSFDLVNAVLKEKWEETLTTCSLELMNILIINEHEKLEKLEREIENIQQELDTKNIEIHKSYERLLTEIDKYESIVIERKKQKLSRDQQDFETGSVYTWPHKITHVPRKLDKELDTSDTDTEPQSRRLVRSRTDILESMTSQDRPRLKRNRGEQSTAYTRNA
>Penelope-12_XT_pol#LINE/Penelope 1213-3732 [Xenopus (Silurana) tropicalis]
YFREHDITRQTSLKKKPRRTIHSIYTKRKIRRGQGKRKGIPKTPDPAELQISGETAETVTRDALQVINLSKHTLNKDHMSLLMKGLSFCPTPQGDYFELEKDLNLFCRKILLKKYFKKDKLREPDIVDKDKEILGVLESLLDESDLDQKFQKANRSGLKKKSDFTPGYGISNYVSVFRDMASDALLKLNHKRQSDNLSKAERQALKELKSWEDVQIKPSDKGGNVVIWDNDMYILEAKRQLHSDTYKRLYGNPTEGFVAIHNNLINDAFRDLLISEQEKSFLLVDNPRVATFYLLPKIHKNKVKPPGRPIVSGNGNLTENTSKYVDCLLRKYVTALPSFVRDTMEVLARLNGTHVMKGTYLVTLDVEALYTSIRHKDGIEAVKYFLDIDPSINPDLGHFIIKMLSFILHHNYFVFNNVFYLQIQGTAMGTSCAPTYANLFLGKWEQDVVFGDDLSFFTNYIPLWIRYIDDILFLWEGPLNLLNDFITILNTNSLNIRLTQNISQNMVSFLDLTIGIDEKSNITTDLYRKETATNTILHFESYHKNTVKRSVPTGEFLRLRRNCTSFETFRLRSEQLKTRLKDRGYSNKILKQAYHRALTTNRDNLLKTKPVKTHDDQQLRFITTYGPQTYKVQQVIQELWPVIHQDADLRSILPETISFCYRRCQNLGDHLTRSHFTGRKRQPPVKGTFRCGSCVSCSMVKNQDSFTDRFGNLQHVNDYINCKTSNVIYCIECPCDRKYVGMTTQRLNKRIQKHVSTINMAKEDRQKNKILSTVASHFLTYHNGNPEKLQFWGIEHVSLGIRGGNISEFLLKRESKWIYTLNTLAPTGLNEKIDFSTFLR
>Penelope-13_XT_pol#LINE/Penelope 3-1694 [Xenopus (Silurana) tropicalis]
PKSAIFHHLPKIHKKERPPVGRPIIAGIGSLGENLCEFIDHFLQPLVLRLPSYLRDSGHLLYTLNNYQWNSTNLKWASIDVTSLYSCIPHDLGLQAIEYHLNQYSTYDSNFITFLLRSIHFLLTHNFFYFDKKYYLQCRGTAMGAKFAPSYANLFLGWWEDLHIYNDNNQFSDHIQYYGRYIDDIIIIWSGTDEQFSDFIKHINTNDYNLQFTSEIHHASINFLDITLSTFNQSVTSTIFRKDCSANTLLDATSCHPRHSILNIPYSQFLRIRRVCSEESEFMSKSTDLYYRLLDRGYPRKNIIKAFERAASVDRSSLFDRYKTRDSKVSKHKKNVHKKDNESLTCILTYSPQQKMIEKIINNNLTILKTDPILRQILNNGHRFVTRKTETLSNLLSPSLIHTNETTNTWLSTKGCFKCGTRQCITCNYIQKTNSFTSSITSKKYQIKHFINCNTRNVIYLLTCTKCMKQYVGQTGRKLKDRIREHVLNITNANSHTTVAKHFHECSNRSPSFLQVIGIDRVIPNPRGGNISSILIRKETKWIFFLKTRQPYGLNFDYDVTCYV
>Penelope_Ele2_pol#LINE/Penelope 333-2726 [Aedes aegypti]
MASTLSESNTFIKLKKSIAGLKKDIAFLSECRKLNLTPKSHKIKVRGQVPQDIIKKMESEYLRSSIKKLHSKLNSQTLKCYSLHLKLAKQYPWEFPLFLTKVIQAEECEARRKKDIHSKKLAILKNKQHNKVVTALPKVHSIEGFVVNRSTQQFSEEQLTLLNKGLAYAVATKPDIEQTIIDVETAITHTIPIEFQESARNDTEESLKGNKFQLRGQNSDEDKVLSELRDKSVYYVKADKGNAVVILDKDDYDNQMNEKITTGPYRHFRVDPLPTMVRHVEKTLKECKPLLGDNTSRLKVSNPVLPRIKGLPKIHKPGNEMREIISAEGSPTHKLAKWLVKEFQSMPKPFESRSVNNTQEFASQLQASGYIQDDEIMVSFDVKALFPSVPVKEAINLLEEWLLNQHNESNWKNKVRYYIKLTRLCMEENYFSFRGNFYKQTKGAPMGNPLSPFLSELFMANFESILKKKDLLPQRWWRYVDDVFSIIKKDYLPKILEAINSIHKDIKFTHEEEKDNKLPFLDLLITRESSHFEFEIYRKPTNTMRVIPSTSNHTYQHKMAAFHHMIHRMQTLPLSETGKSKELDYIFETARLNGYRNSTIQAVVDKRARDKYRKSMTTLTAEKEDLKRVAVNFDTKITQPLAKKFRKYGVDLVFSSRSSQLKSRLGSTKDKINKLNRAGVYKISCPHCNKIYIGQTKRTLEIRFKEHIAEVKKADKELEKGLAYDFKSKVAEHVFQDGHQMTSDNIDIVRSVSSSWKLDVAESLEIYKQKPSLLLNRDQGNGQSRLFKFVPKKYKRA
>Penelope_Odi_pol#LINE/Penelope gi|49035804|gb|AAT48673.1| pol protein [Oikopleura dioica]
MDNRRHLETRELIRNGEKLHRNKEHLHFLTKCHEAKTPPPYTSVPKQLLRTTNWSRDQLLSHRLKIIDKDIQATQDRICRLQTTFNTSLSKLQQSISSSAFLICKKHIFSKIATNQAPIDKKRTLKLKTLLSSSTAHKSPTPIVALTNVTIPQDLLNLLEYGIDLPIGGSPNDYKILTSLEKLTKNWTAYAEENNIDPFTIDEAKSYLKVNFHLLRKCYNPQNRQKLLTTFLDQNPEVRFIKIDKSKNLELISHKDYSLKLNKQFNNAHFEKLPRNPLTLDIKYFYTFLRKMEPYISKSTWHQITPNYALKAAYGIIKRHKPNHPLRPIVSSKNSITSGIESYFVKILNKLLPKIKYSFKSTQDFKKKFLIHRAKFNPKTDWIISFDVESMYPSIPLDRIIPKIVDIIYSDPKNFFESETRDDVECEIMPRTIFEEIFTKTLRHFTAFSTESSFFRQKQGVAMGSQMSGIIANITMSLLEQDIIDNEIVNKNLKFYGRYVDDIICIIKKSEVPRINHLINNWDKNMNFTIEFAKNHSLTYLDTRIYFDQNTKFLELKQFQKPSKTDTLQNFEEAVSPLSQKIGLLSGEIYRANNTTTTPENLDHALKSLVKKFTANSYPVKLVKSKIKNIQDANFIPPEKDPNITHRFHLSLEYTSPRVNKIAKTIANMIRKITPSYKVVLAFKTLRLGQIITSRLKRKIEYNEKSGICYKFLCSCNKSYIGETLRTFHLRRLEHTRLRSNTAIKRHFSNCPIFQNEYENHINSPEVTSEISEGNFAKTKFSILQSNLSQYTNRTLTESFLITLFKPTINEQTDYRKEICFL
>Penelope_SM_pol#LINE/Penelope 1-2370 [Schistosoma mansoni]
MVHLMITDAHYRIRKYQHVIEDQKRKLQQTLTPEHFETLSTAIETLCKRHKEKRRNILKKEIFKISKPTIEENTNNSVVNLSKQPLTNTEEQLLRKRLNYNTSDAPKLAFYAALESLLKTSGISEETQQEIRQSIIPLTQRMKGNNQLTSQEQTALKKLRTGKDIVIVPADKGRTTVIMDKEEYIKKAEEILEDKSTYKPMDINPVKKLDNRISKTLNKLVKAGEITKQDQWRVKSNGPVLPRFYGRPKIHKPNIPLRPIVALPGTPTYNLSREISRILKHFVDSSNHSFKSATQFLGQIRNIQINDDELMISFDVTALFTSIEPNLAKETLSLLLTNDENLAKYTKLQSQSLLELMDLCLTTYFQFNNKIYKQTKGTPMGSPISRLFAEAVMQRLEASILLMIKPKNWIRHVDDTFLIVKKEELEHTYKLINNVFNDIKFTMKQESNDKLPFLDILITRTNTKKPETQVYRKPTHTDQILNYNSNSPRTHKVNCVHTLFKRARTHCYTIPAQLYVVLYLKTILQKNGYLINFIKKYQPHPSSEIKSTTEINKRITIPYIKGISETTKRLLKAFRINVAHKPTKSLHSILCKPKDEITKEDKPNIIYKINCANCNKHYIGQSGRPLHLRLQEHQLAVKHHDMSSLISMHVDNYRHTFDWKNVEILDRGNSKNTREFVEAWHSGQSAINKHIEINPIYQPIKKIMQEHRSKNQTNRRYNQNKEINNDRFKVNKNQSTSRCRGQAVNHMWRNSNTSLLPEVCADDLVQKDDESSTTKPSSSENKPTSKSST
>Penelope_pol#LINE/Penelope 60-2567 [Drosophila fruit fly genus]
MSYAKIKTKYKDSKRTINKFQLTLVKLTKLKSSLKFLLKCRKSNLIPNFIKNLTQHLTILTTDNKTHPDITRTLTRHTHFYHTKILNLLIKHKHNLLQEQTKHMEKAKTNIEQLMTTDDAKAFFESERNIENKITTTLKKRQETKHDKLRDQRNLALADNNTQREWFVNKTKIEFPPNVVALLAKGPKFALPISKRDFPLLKYIADGEELVQTIKEKETQESARTKFSLLVKEHKTKNNQNSRDRAILDTVEQTRKLLKENINIKILSSDKGNKTVAMDEDEYKNKMTNILDDLCAYRTLRLDPTSRLQTKNNTFVAQLFKMGLISKDERNKMTTTTAVPPRIYGLPKIHKEGTPLRPICSSIGSPSYGLCKYIIQILKNLTMDSRYNIKNAVDFKDRVNNSQIREEETLVSFDVVSLFPSIPIELALDTIRQKWTKLEEHTNIPKQLFMDIVRFCIQENRYFKYEDKIYTQLKGMPMGSPASPVIADILMEELLDKITDKLKIKPRLLTKYVDDLFAITNKIDVENILKELNSFHKQIKFTMELEKDGKLPFLDSIVSRMDNTLKIKWYRKPIASGRILNFNSNHPKSMIINTALGCMNRMMKISDTIYHKEIEHEIKELLTKNDFPPNIIKTLLKRRQIERKKPTEPAKIYKSLIYVPRLSERLTNSDCYNKQDIKVAHKPTNTLQKFFNKIKSKIPMIEKSNVVYQIPCGGDNNNKCNSVYIGTTKSKLKTRISQHKSDFKLRHQNNIQKTALMTHCIRSNHTPNFDETTILQQEQHYNKRHTLEMLHIINTPTYKRLNYKTDTENCAHLYRHLLNSQTTSVTISTSKSADV
>Perere-10_pol#LINE/Penelope 3-1232 (fragment) [Schistosoma mansoni]
LSLGPKFCDFKTVNKMDVEIQFENLYAQTAELVSSSKDNVESFKSTLVDCCFRYLNHGHSSKGILTNKHKEALRKLKTNDNLLITKPDKGYGIVLMDKNNYINKMKAFLNDQSKFQKLVVKNDLADKIEKQIIDSLKQIKQQGFISEKVFEMLKSIGTRTPRLYGLPKIHKSGLPLRPVLDMNNSAYHTIAKWLMQILKPLHKEIVKHSVKDSFEFVNNIKNLSLKNKFMISLDVTSLFTNIPLLETVDFICNELTERHTETVIPVTAIKQLILRCTMNVQFRFDNEYYRQLDGVAMGSPLGPILADIFLAKLENGPLKDTISHLTSYCRYIDDTFIVLEKEHEKENILNIFNNIHPSITFTLEEEQNGSISFLDVQLTRRIDGTLKRGLHRKSTVGQYTHFYRAVSIK
>Perere_Smed_pol#LINE/Penelope 1-2523 [Schmidtea mediterranea]
MIAVLSKYIVRKVFYWRYRLIKSLPNLFNYLFINHAAAVPIFKRFMKVYNSLKRKELDISFLETCLEEKMIPSFIYKMKLSDCLSSKDVQLIHRRTLRRMLESEKIRRTSIDKKLTNIGLMLNNATNEFCLQVCVEWCIKNSIVQIKFKENAHIKKLINLRKIFGISKFSVENTVINLSKIVLNDDEERVLKFGPNHCIKNRLDETKLCAKIESLYFHIARSMKGINGNYVKSSLSASTMEYIDKNKKQNIRDFMTLKNLAKKNINICKFDKGNGIVILDHDVYVNKLNDLLNSPQFVKLPKGRKNGKLPPLKDEEFVQKMLNGFIEKKLIDEEVGKSIRPIGSQPAKLYGLPKIHKDGVPMRPVLSMVGTAQYKIAKFLDGLLKPLMRSEFECKDSFEFVSCIAKLQKRSMNDVMVSFDVCSLFTNVPLVETIDLCCALWNENDSEHHILDRRAFRKLLEFATSNVNFLFNDEWYQQIDGVAMGSPLAPTMASIFLASLEKKIASFQFEKPFVYKRYVDDIFLIFENQKHVEPFLQFMNSLHKNIVFTCETERKSSIAFLDLLIQRKDKQYETEIYRKPTDTGLYTSPESFCEFKYKRNMVKGLIYRSWALSSTFANSVKSVDKLVELLIKNGYSKSFLLLMIKETVDKLIKNPKDPCCGKSECNLSDGCELSVDLGDCKNGYKKIEPKYVLVLPYSEGFTNYKRKLGKLIGNLEYKIVSNSCKVRNMFINKSKTPVGLCSDLVYQFTCNGCNATYIGETSRHLCTRVLEHCRLKGLTNISEHNRGCKSDIGMSDFRILLR
>Poseidon-2_HM_pol#LINE/Penelope 12-1792 via tfasty with Poseidon_Hyd, 1 frameshift and 1 stopcodon.  [Hydra magnipapillata]
KLKKNIDIYPFDKGTGFVRIEHDKAIEKIREQIGPTKISEDPTLVMQLKLRYLSKLNKKHRFSKDEYESIYPSDPIPPRMYGLIKAHKPEKSYPMRVVVSTIGTPSYGISNYLVKIIQPVLNENPTRLKNSKEFINKTKSWxIDKDEIQVSFDIVNLYPSIPLKEATLILLDQLNKSVSYKNSTKLTLTETKQLIELCLFRCYFLWNDEIHELENSGPIGLSFMVVLAESFLQYHEEKAIKMAMTIIPLIDIKSFHRYVDDSHARFSNLNQAEQFQTILNKQHPSIKYTIEVENENKILNFLDITVINNTKGKYEFKVYRKDAITNIQIKPHSNHDPKILKAIFKGYIHRAYSICSENHLKDEINFLIQVFTENGYNEKINCSFINIYTHIYIYKKDISDQVRKKRFANKNEIPSNSNNLPTISLPWIPIISPKLRKIFRKAGYRTVFKSNANLKTLLTSKNKSKLPSNSHPGTYLIKCKCSKVYVGETKLQIRTRIQQHQKFLTEGKLNQSALALHKINCNEDIKWDKVKTLKVEDKKFERKVREALEIQKHQCSPTYGGMNLDNGQYVKTNFWTSFFSYLGKRSHYKGDVKI
>Poseidon-3_HM_pol#LINE/Penelope 3-2466 via tfasty with Poseidon_Hyd, 2 frameshifts.  [Hydra magnipapillata]
KDYITTFYGxKIYDDTKKLQDLKIRNANSKNQLVFLQKCLSNNITPKSFKIKTPVHTKKAKNIMKEYSKKLLIHARNEAKHRLYSSKKLINELNIFLQTKVRLHDYELINSITNKSKNYHYIKKKTEMKEKYHKLQITSIIKNTFRINPPNQVIKPAILNLTNVILDKSTTELLNLGPNFVPLQKKIPYMDIITNIETCALQLEKLKKPTQAETLRQNCSQILTNSLKLRLKDNLTKQQRLSINKLKNNSNVKIYPFDKGTGFALLNQKDASLKLEEQIKNSKIIDYDPTSTLTTKFQRQLCKLRKEGKLDTNTYFKMYPSDCNPPRIYGMIKAHKPEKDYPMRPVVSTINTPPYGTSDYLVKIIQPTLNKNKSRLMNSNSFVNEAKQWIIDPNEVQVSFDIVNLYPSIPIDEAIPVIIDILNADIDDLKTRTKLTLADIHQLIELSLSICYFLYENNIRIIPNSGPIGLSLMVVMAEAFLQNIERKALNIAIIRTSEPKTYERYVDDCHARFASIKQQQMFLNILNEQNPAIKYTVELENDLKQLNFLDINITNTGSGTYEFQIHRKEAITNVQLKPNSNINPNIIIGVFKGFLCRAKRICSQKHLQKEIDFLIDIFVENGHNKNILNNITIDYLKNGSKNTTFQPIDTQPFIKLPWIPIVGPKLRKEFRKQNIKVIFTSTPNLKNILCNNKTKLPPNTNPGVYQLKCSCNSIYIGETKKKVISRCIEHQKNSLKGKWSSSGATEHSETCHGKFDWSHPKTLSVAPEYQIRKIRESLEINKAKVRQEFGSDEKVLNNRDDGDYVTTKTWGPFFIXIXDVNI
>Poseidon-4_HM_pol#LINE/Penelope 3-1817  [Hydra magnipapillata]
ILTSSLKRKLPDNLTRQQRFALNNLKKNKDALRFYPFDKGSGFVVINESDAFKKLDDEIKKSVIINYDPTQTITTKFQKFLRKLRKENKFDKKTYFQLYPSDCIPPRLYGVIKAHKSDKNYPMRPVVSTIGTPPYGSSEYLVKIIQPTLNKNKTRLXNSSSFVNEAKSWVIYPNEIQVSFDVIALYPSIPIDKAIPVIIDILNNDKDDLENRTKLTLTDVHQLIELCLSQCYFLYKNEIRTIPNSGPIGLSLMVVVAEAFLQHLETKTLRVAEINLFSPKSFKRYVDDGHARFDSLEKHDKFLELLNQQDPAIQYTSEIENERKELNFLDITIINTNNFHYDFKIHRKPAITNIQIKPNSNINPAITSGVFKGFISRASKICSPKYLQDEIQFIINMFVENGHKKSELELITKNYLKIKNNPVGVVADQTKNGNITIKLPWIPRIGSKLRKELKRYGAKVIFTTPPTLKRILCNNKSKLLPNSKPGVYKLTCSCGGVYIGETKKKIIQRSIEHQINSMKGNWHASGATEHCKNCHGIFNWMHPKTIAFKSNYHERKIRESLEINYAQTNYEIRHFPPLLNKDNGVKIASNSWRPLFKKIIEISK
>Poseidon-5_HM_pol#LINE/Penelope 1-2142  [Hydra magnipapillata]
ARENMFIKSKERLVKKFLILQNEXENKNDNAEKTTNYKKNAVLNLCDTDIPVSHNNFLNLGPHFVPSLKSIPYMDIITATESSALKLEYNNKIENAQDLRKNVLRELKTGKKLNNNLTKEQWKAYREIKEEKNVDIYPFDKGTGFVRIEHSKALEKIREQIGPTKIVSEDPTANYAAKIRRYLSKLNKRNCFSKEEYEKIYPSDPIPPRMYGVIKAHKPEKFYPMRIIISTIGTANYGISEFLVKIIQPVLNENLTRLKNSFDFIKKAESWKIDKDEVQVSFDVVNLYPSVPLKEATLVLIEKLNNNTTYKKLTRLSIPEIKQLIELCLFQCYFHWNNEIHIMENSGPIGLSFMVVLAESFLQFHENNAIKIALNFNPALNLKSFLRYVDDSHARFPDLNQAKHFQYILNQQHPSIQYTIEVENELGTLNYLDIQITNKKTGKYEYKVYRKDAITNIQIKPHSNHDPNILNSIFKGFLHRAYSICSKSYLQNEINFLIDVFIENGYDKTQMMNIAHQFQHKRQNKITIPSEINNYPVVSLPWVPGLSPKLRKIFRKAGYRAVFKSNPNLRSLLTSKNKSKLPNNSQPGTYIIKCNCSKVYVGETKMKVNTRMHQHQKSIDENKQHQSALALHKTFCKKEIIWEQTKTLKVENKKFERKVREALEIQKNMCSAKNGGINLDEGQYVKTKFWTPFFKFQRKRSHSTADVNSNVLI
>Poseidon-6_HM_pol#LINE/Penelope 739-2946  [Hydra magnipapillata]
ERLYSSKKLIDELNLYLQSKIRSNDYEIINNITNKSKNYHYFIKKTKMKEKFYKLKNDISYKINFEKNRPNQILKPAILNLTNINLDKATTELLNLGPKFVPIQKNIPYMDIITNIETCALELEQQNKQTQAEILRQNCSKILTSSLKLKIKDNLTKQQRLSLQNLKKHSHLKIYPFDKGTGFALLYENEAKXKLEEQIKNSKIIDYDPTPTFTTKFQKLLCKLRKQGKLDNATYFKMYPSDCVPPRIYGMVKAHKPEKNYPMRPVVSTINTPPYGTSEYLVKIIQPTLNKNITRLINSRNFVNDAKEWKIDPNEIQVSFDVINLYPSVPIDEAIPVIINILNDDLEDLKTRTKLTLVDIHQLIELSLSICYFLYEDKIRILPNSGPIGLSLMVVIAEAFLQNIEKRALDIAFVNSFQPITYKRYVDDSHARFDSKEKQELFLKALNEQNPSIKYTVELENKRKQLNFLDICITNTMNGFYEFQIHRKDAITNVQIKPNSNINPSITIGVFKGFLCRAKQICSQKYLSQEIDFLINTFFENGYNKNNLIKITKNYLDGISKNTTSNQLDQKFVKLPWIPIIGPKLRREFKKQNIRVIFTSAPSLSNILCNNKTKLPPNSNPGVYQLKCSCGNIYIGETKKKIISRSAEHQRACKNQKWSSSGATEHSKTCRGNFDWLNPKTLAVVQEYKIRKIRESLEINKAKVRREIGIGEGVLNRDDGDKVKTRTWGPILTKI
>Poseidon-10_HM_pol#LINE/Penelope 217-2707 via tfasty with Poseidon_Hyd, 1 frameshift.  [Hydra magnipapillata]
MTLKLYITAKYGADVYKQTEQLQLLKKSVAKSKNQYIFLQKCEKHKLIPKSLRINSPVNTKRAVSIVIRYRFEILICIKNDAKKRFFMLVKKLKNLQKDLKVILDEIDYKKVEQVTEKAREIMFLKSKERLFKKFKILQNEFENNHSNKICKLTTHTKNAVLNLCNDDIPKNQNNLLNLGPHFVPSLKYIPYMDIIATTETSALKLEYSNKIEDAQDLRKNVLKELKMGKKINQNLTREQRKALMEIKKNKIIDIYPFDKGNGFVRIEHDKALEKIREQIGPTRILSEDPTSSYAIKIKTYLSQLNKKQRFSKTEYDSIYPSDPIPPRMYGLIKAHKPEKSYPMRIVVSTIGTPNYGISNYLVKKIQPVLNKNQTRLKNSFDFISKANSWEIDKNEVQVSFDVINLYPSIPLKEATLILIDQLNKDDSYKYSTKLTISETKQLIELCLHRCYFLWNNEIHELENSGPIGLSFMVVLAESFLQHHEQNAFKIAMAVNPPLDLKSYLRYVDDSHARFSNTQEAEQFLIILNKQHPAIQYTIETESENRTLNFLDLTIINNNKGKYEFKVYRKEAITNIQIKHHSNHDPKILNAIFKGYVHRAYSLCSNLYLQDEINFLIQMFNENGYNICQLKRIANLIGNKRSLKINKIQSDSLNIPTVSLPWIPSLSPKLRKIFRKAGYRVVFKSNPNLKTLLTSKNKTKLPQNSQPGTYLIECKCSKRYVGETKLQIRTRTQQHLKSLNEGKHYQSAIATHNKFCSQEIKWENVKTIKVETKKFDRKVREALEIQRFQCSPLHGGINLDNGQFVKTKFWTPFFTFLRKQERSHSTADVS
>Poseidon_Ac_pol#LINE/Penelope 1-2541 [Anolis carolinensis]
MPAIDVGETSGENASGTWPHSPKDIQQPCDPGHESLRQHIEHLYGEKLFQDTRRLEKLRTRKAHLLCSLTFLLRCRDTDTIPQFLAAKRTFKTPQAHRIYNRLERNLLRERIHTIRKELANTDKELLHLHINISQKMNTQDWDKIDSLTYKKMEKDMVLHTKRQKQKFDKCRKQQPKPELDKSRTIINLTDRQLTEDQVSILEKGGNFAVTTTRIPVENIIANVESAIYQLPEEEAEEVRMETARILRNAKLPPSNITRKERQAIKDLNSDPEIIILPADKGNATVIMETKQYKEKIRQLLDPTIYKKLKQDPTNKITRKTNTLIKNSSINFDIRQQLCKSEALPPRLYGLPKIHKDSIPLRPIVSAIGSPTYNLAKFLATQLQTHIGLTAHYIKDSTHFIEKISNLNLSTKDILISFDVVSLFTKVPVADTLTLIKQNFPEDITALFHHCLTTSYFQWDTGFYEQKDGVAMGSPLSPVVANFYMEYFEKQALETAPKKPTVWFRYVDDTFTIWSHGEEELSKFLDHLNSIHPNIQFTMEKEKEGKLPFLDVLVIRKPNQQLGHTVYRKPTHTDRYLHKNSNHHPSQKRSTIKALTDRAQRICEPHLLQGELNHLNWALQANGYSTTDIRRAARPRTSHESQDKDPPRGKVFLPYIKGTTDRIGKLMKKHNLQTIYRPTKKIQQMLRSAKDKRDPLSSAGVYRIPCSCGQVYIGTTKRSAQTRVKEHERHCRLIQPEKSAIAEHLMNQPGHRILFENTKMLDHSNNYHVRLHREAIEIHKHVDNFNRKEETMKMNKIWLPVL
>Poseidon_Ap_pol#LINE/Penelope 1-1767 [Acropora palmata]
TRQRELPESNKVDIRSRIASTIQSASLTDCNLTKDELHALRRLRNDKDIVILPSYKGCATVGMNKKDYSHKMDSLVNDKQTYEPVKRNPTPALQRRVSGKLLDFKKKETMDIQLYYRLRCRVPQSTKLYRLPKLHKPNIPMRPIVSFCGSPTYQLSKHLIFLKPLTDKSRHKLQSTDNFIDAIKTVQIPDDHKLVSFDVKSLFTSIPLQLALDRTKTAIKKSHYQPPLPTDDLMDLLHLCLTSTYFQYNGKHYKQLHGTAMGSPVAVVVAEIVMQNIEEQALATYSETLPLWLRYVDDTITAVHESKIDEFHEHLNEQNTSIQFTKEIEENGKIPFLDCLVTRENNTLRTTVYRKPTHTDRLLDQTSYNPTSHKATTVRTLTRRAQIVCDSDDSLTDEIKHLNTVFIKNNYNTDFIERNTYIRPNDSSNNSYTTTATIPYVRGTSETIARILRPYNIRVAHKPIFTLRRLLTHVKGKDKPEDRPGAVYKIHCSDCQATYIGETGRNLTTRLTEHKRATKKGDLNNNIAEHHLKTNHAIDWDSATCLT
>Poseidon_Hyd_pol#LINE/Penelope 23-2503 [Hydra magnipapillata]
MSLKFYITSSYGGKLYKNTVQLQVEKTKNAASKNQWIFLERCIKNNIIPKSFHIHCPVKTKNGYNLMVEYRKKLLIIAKNDAKKRFYQSKRRVIELSNAIKNIMKPEDMLNIERITNKSREIKFEQTKQHLIRKFNFLINSKKNDSLKKFNPLNIISIPPTNLIKNPILNLSNISISHEQENLLSLGPQFIPTQNKIPFIDIITSTEECALNIEKNVNVERAEFLRQNVSKTLTKYLRVKIDSNISKNQRLAINELKNSTNIKLYPFDKGNGFAILNSDSAIQKIKEQLGNCAISAVDPTQKFLSLIQRTLSKLKKDKKLDKKTYGKIYPSDAIPPRLYGCIKAHKSEKGYPMRIIVSTIGTPPHKLSQHLVEIIQPTLNKNECRVKNSSSFVSTAKEWFINDEVQVSFDVINLYPSVPLDKATITIIDMLNKDRDDLIQRTKLSLVDIHKLIDLCISKCYFLWEDKIYILKNSGPIGLSIMVVLSEAYLQHIESNAIQQALNVNIAPKTYKRYVDDSHARFTNIDDANSFLTLLNSQDKSIQYTCEYENAQHQLNFLDVCISTNHSLHKYEFSIHRKDAITNVLIKPKSSISPNIAGIFKGFLARAYKICSEHNIQDEINFLIKIFTENGHSYKQYSDIAKNYKYSTNPSCSQKFDTKNLVILPWVPKLGLVLRREFRKVGVKTVFRFGNPLINILCRNKSKLPPNSHPGVYQLNCTCGAYYIGETRKKISTRIQEHKSNVTKANWETSGIVEHSQHCNGKINWENPKTLSIISNNYTRKIREAIEIQRVQCSKPKENVLN
>Pt1_gag#LINE/Penelope ORF1. [Phaeodactylum tricornutum]
LGLGVGFLQFSNTLAAISLHLLISRRLMKSSILLFAIALCALLSACSALRTKPLSAVRMKIVTWSNLIYCSKKCPLIRLLPLPRWTSRPNLRSLLLLLRRSSPPLSTNASKLDLNSSLSKKKHLGAQAFLRHRRIVRRRRAPRQQRNPRPLRSSLPKNQPHKNRPVEKSCNSPTSLPTLLPPPPSPLRKRNRIFGIQNDSAVRDRRNENKASVRLCCQPCSHSLPQPKYPSARHACVALF
>Pt1_pol#LINE/Penelope [Phaeodactylum tricornutum]
MPAWLYFSRPLNAAFHNLCSSATTVPSNTRSLLGLGLSFCVRRSRTGGPRTVDFRRFRRDCFTKMLFAGSDPLPPTKLFIRSTWEPPPDEIPPEFRVRVATFSRDVRRLFRRQSCSSNLLPSQSAALRTLRTNYSLIVCKTDKNLGPAIMDRSTYICRAFQDHLADASTYRRLSEITATNRISAVRRIILGFISTTFPTRNDPTRKFLLRSLEQVSDPFGYFYILAKIHKTPWKTRPIVSVSGSLCHGLGRWVDSQLQKLLPSLPYVYNSSTHVCQRLRVHSDLPLSARCFSLDAVSMYTNIDTRHALSEIRAYFDSSGICERHGVQSMALLKGLEIIMLHNVFRFGDTFWVQKTGTAMGTPPAPMYATLYFAIHEHRILPSFSRELVEYGRYIDDGFGIWIPDPTLSDVDNDARWLSFQQAVNDYGRLTWEFTPRCSSLTFLDLFIELVPHEPIRTSLYEKALNLYLYLPPHSAHSPGMIRGLIIGQVRQIFLLTSTHGKRTELVRKLFLRLRARGYSRTMLLPLFNSALVLAESLLRPAPSASLSDSPPVADPVLFLHVQYHPLDVPTATLQQTFASTMLHPPGEPPLPDLRNRSFSRFGCNRLIVAYHRPRNLGNLLAPRRIRTTNDAPVSVILRDFDDPVGVINPDPLSLEP
>Sm1_orf1#LINE/Penelope 373-3192 [Selaginella moellendorfii]
MPATPPPPLPSAALVPIPDSHDVMDPSPLMPPGPAAPGSSNHAMATAETGYAPVPPAPVLQFELGTTSRATSSREHSQLLAEAIYDERASHRPLSPYLKRVLDTRRALRLRTTHVITAHIETRLENLEQDDTLSSVANFFCNEALRSALQRPPTSSDTATPQNSSDSVARSPDMSRLQQSMRHGPHSAAQERCMANTAASPAVNCDSPTSEQEVSQAEGTEHVVHVEHATEHVAHVEHAAVQPMRRFPMPDLPRALRAPRHQRDLRSFYVENFPHRYVRSQFQDAFESLLRDRGAYPHGVLPANPGPLTAEPSATAMRRIFPPPVVPNPVSSPPRPAPAMAAEQRPPSERGLPGPGPLRQPLRQPPSPATHGSVSRPVQPRPTTSHRQEQPVSTPPRPTPSPRTRRTPPHTSMPERPSTPRSPEAGPPPLTPRASPAQRAPSTRTTRTQASPRAASQELRRPPPAPVDPPVAPPPRDHPAAQGTRTDAEAIPPQPERCSGQPAPGRTPEPPAAPPPPLATGAEDGYTLGGFKNIDGAFNSILASSLREFLQEYNTLVSSRSALQGLKDLKEQKKRPQSLRTRPPKLKVSRHAQDGLTSRIAEAHERYLTELHDILIKAREDEIETLQRLVSSGLRDLFRSRLEDLVTSTLSYCSATEHDAVYHHLLALKQRCTLKFHTETSFFMAGKGIEHRAQTTATRRLEEAIDAANASADALPKEQTMAELVNAAVTKALQSQRHATPSNAGKKKRKREKKNKAREQRDGTPGKHAQESSKRHRVSFAANADEAGSRSATPARNDQGNGQRRNGATGTPPTRSAASASSSRGTPRRTSPARPGSREKNAGRDGPHRSGRSSSPQGRPRSTTPAPVTSGPQRPRGRSPTRGSKGARTRSPRPRPGRSQTPAS
>Sm1_pol#LINE/Penelope 2766-5036 [Selaginella moellendorfii]
PGKRTAAERGYWDSSHPFRCIGFFFEGDSAPDISSPAWFPRKECWTRWPSPFWPQQLPTGAPTLHDTGTGHLRSPATSRTFTDQRQQGSSHTQPSTSPWTEPDPCQPQEQDPSTTTPLSLALTFANRQSPREGNPQDYWSPLTSPSKAILDIAGQRPVSKFENRVETGAVHNLSSRALSAAEIRLLSLGLRYIPNPAPLRAPQIVESSDALCRAVRLRHLFKDDDSALPEFRVPNPSFEPPPAPAYVERRLAHVRGSLLHRLEGAHKPRSFAHGWKKRALHSLATDTSIVIKPADKNLGAVVLDRDWYTKEALRQLNDPLVYVKVPSVPSKSLQERLAELITKYRSCSWLDNSTQQFLLHQPAVPRQACMMYFLPKIHKQPIKGRPIASYIGTLWEPLARWLHRQLYDILLKQPTFLSDSRTLLQDLLHLQLPRDCWLFTFDVESLYPSIPTREGLQRLRDFVFAEYGNTTRSRFLMAAAALVLEHNYVEFDGNIYQQIRGTAMGSNFAVVYACLFLCSLEAEYKHATNDWPFYLRRYIDDGVGIWTGTRAGLERWLRGYGTLCPSIKITSVISLEELDILDIHFFKGPRFEETGCLDSSTFQKPLNAYQYLPWTSVHPRHQKVAFIRSELRRYLLRESTADGFHAMRTRFYHRLRARGYPTSFLHHCFSGISYDQRHQALLARSRRSSDACRRAPLAFKLPYTLHSAQLGLGDILNPKQVMDEAPTDTLPRVITCWRRSPNLGSFLVRAK
>Sm2_orf1#LINE/Penelope 329-2107 [Selaginella moellendorfii]
MQPTLSPATAPVATMPPRRSVVPPVTTSTSPMAVPTTNSLSPHAPAYTPMSTLACTSVLTTTTIHTPTPSTTSPPLFATTPHTPPTFSISPPVPLTFSTTPPFSMASTLPTLFSSTTSIPPPFSSPAVPSSTPFSGLVDLFTVLQNSAGISATGNTLPQQLPPFLAPGNALTSSSTEGLGRLDEALSAILECSIKEFMNELKSLNQAHKAVKRLTQLRDKKQFPQDLRIRVPKLEVTSHGQELLDTSIKAIHEQYLKDLLDSLLKAREAEAATLADLINHGLSQRFNDRMDDFVHCALQACGNAQREAVTHTLNARKHQLIAEYQRATAIGAVAYGVEESKKENARKQREAAEDAARAKAETLPKEDTVKMLVQSCFDKMWKERERGIPRQHHEDAGRGTRSQGKRQQRTDTSLHIREAGSSKTRKVSLPSGERDVTHGRQGNEQGRNVVTGTPPTHSDAPGFSSRGPLHRQSPTVLGSQPAMTGRGGQRQSRGNGRPPRSQPNWPSGRGRQTTPRPPPAAQQRQPTQNQKPPSPPRGQEMQPSQHH
>Sm2_pol#LINE/Penelope 1633-3951 [Selaginella moellendorfii]
RYPWTAGKRAGAECGYWDSSHPFRCPGFFFKGSLAPAISNRAWFPASHDWQRWPTPVSRKRSTPTVPTELAKRPRAPDYTTTSSSSPTTPANSEPETTFTSQRTRDAALTAPQQHPTPRTNPTLWLGKKLASTATPALSSYGSACGQKRQGKSFWLPLIAPHEALLHFAGNQKVSQLENRVEIGAVHNLSSRMLSAAEKRLLALGLSFIPNPVPLTAKKIMECLDDFQRSVRLRHSFKDSNSLIPEFRVPNPNFDPPPASWHMESRVARIREHLLQRLSCCKRPRSFLRGWRRDAVLALRHDHSIVIKPADKNLGVVVLDRTWYIQEAMRQLNDPLVYKRVESIPHQPMHERLLELLLKYKSCSWLDKNTAKYLITLPSPPRKACLLYFLPKIHKQPIRGRPIASYVGYIWEPLAKWLHRQLFGILLQQETFLMDSHTLLHDLHKQQLPKDCLLFTFDVESLYPSIPTREGLYRLHKFVYRNFGDSMQARFIMAAAGLILEHNYVEFDGSYFLQIRGTAMGSNFAVVYACLFLCSLEDEFKATSSKWPIYLKRYIDDGVGIWDGSKESLECWLASYGSLCNSIKITSVISFESMDILDIHFFKGPRFEKCRCLDSTTFQKPLNAYQYLPWNSTHPRHQKIAFIRAELRRYLLRESNPESFCAIRKLFYTRLRARGYPRAFLIEAFRTIHYTDRDNVLYSPSRKSSSNSLQAPLIFKLPYTLHSAALDVGNTLNPKQVISEVPSDSLPRVIT
>Proto2-1_BF_gag#LINE/Proto2 248-1501  [Branchiostoma floridae]
MPRCEDCREAGAQPCQGDLVLCQRCSDKRFPPSGSGSEAVCKDVIINDLLCFTVNKMDTLPFDIITKLCTETYMDEEIESAKRLVFDTCKPDERYIKRKGGDKSTANMEDIQRVLHSTAPPSLPTFVSATLHLPAVSLEHVDISVCMQELQIMRQEMKLIRDCSIDSVRVQTELVALRKEIWELKNRPSSAPPAPSSSAPPAPSSSAPPASSTSAPPVVSTSAPPAASTLAWPKESYADAVSDTCPSETIPKSLHAGLSGRQVERAPTTKSSQASRRRGYSSDSRALARPQSTSAGGHSDLDSEGFRLVQRKKKRSRAVVGTAVSSSLSAVKSRPAEIFVTRLEPDTLTQDVERYLTDNLSQKCAVSCSKLTTKYDGYSSFRVSVDYNALSEVLSPSFWPCGILVRRFHSRRRSSTS
>Proto2-1_BF_pol#LINE/Proto2 1504-4332  [Branchiostoma floridae]
MEQISKLNVVSYNCRSVKNSLQTVKDLCVTADVILLQEHWLLPDDLSYLSNIDGNFLAHGTSPIDMSEGLIHGRPYGGVAVLWRKSIGAFVNIDDLNDDRILALRINSDGKELLIICVYMPTESHNHTEIFMEKLGKIESFIDESGIPNVLIMGDFNTRPDGTFAPLLYNFCLDGNLHISDIEMLPEDTFSYLSDAHRSTSWLDHCVCSDSVHQCISEMCVLYDFVSSDHFPLRATLDWSTVPVFTNTADDVDSPASRFNWERASNDVLLQYHTCAENLLSEVMLPIEAIRCADPNCRDEHHRESLDSFSYEIINKLQEASKTSLPGRKRTVSHLIPGWNEVVKEYHSAARDAFTLWRENGRPRHGAIWELLRKTRAKFKYSLRQCRRFEAQHRANALATCLHKGDSRGFWSALRSQNGSKSSIPCTIDGHSGASDIANMWKNHYSALLNSVNSTAHKSHVNSTIQSGVSDNPGMSVTVDEICDAINELSNGKACDANCISAEHLKYAGPRLHALLSLLFSAVLRHGYVPPRLLNTVLIPIVKKKNGNVTDKDNYRPIAVSSPICKVLERLLLRRLDEFLHSPDNQFGFKKQHGTDLCVFALKEVIRYYQKRGSPVFVAFLDASKAFDRVNHWLLFKKMIDRNVPLYLIRLLVAWYNVLTFRVRWGNVLSDNFTATNGVPQGSLISPFLFNVYVSDLSVELNCSGVGCYIGNVIVNHLLYADDICIICPSVKGLQKLMSLCERFGSENHIVFSKSKSQCVYFPCGRLKLHGPPPSVTLYGTELQYVTSVNYLGNQITSDLSDDESIRYHVRGFYTKANSLIRKFRFASPGVKRVLFDAYCSSIYCAQLWCQYNLGTIRRLRVAYNNALRIVLGYRTRDSASQMFVTHGIDTFVARRRKLTHAFVQRIATSTNNIISRLYHSDAFFHSKFWTHYVNLVFKSPG
>Proto2-1_BM#LINE/Proto2 17-1009 Fragment. [Bombyx mori]
GTYATPVYACFLDLSKAFDLVSYDLLWKKLENIKLPTEINNILKFWYGNQINNVRWAGALSLPYRLECGVRQGGLSSPTLFNLYMNELIGELSRTRIGCFIDGVCVNNISYADDMVLLSASICGLRQLVSLCEGYAKSHGLVYNCKKSEIMVFETRGGTHDKIPPVVLNGTPLTRVYKFKYLGHVLTPDLKDDEDIERERRALSVRANMIARRFARCSLKVKVTLFRAYCTNFYTCSLWAGYTQRSYNALRVQYNNAFRVLVVLPRFCSASGMFADAHIDCFYATMRKRCASLVNRVRASSNSILSMIASRLDCIYMGRCGAISHGMLPQ
>Proto2-1_CS1_gag#LINE/Proto2 396-1463 [Capitella sp. 1]
MTRTPSFLGEESAMKLIPNELLCYAFNYADNSTVSSLSACLCEFYQPQEISSAREILWKEYEQVISTLTKKTRRSQAPTDAVSAKPFAEDIGVWINHVKNNTSASIMTTFCAVNIRKIPNCPPEEINLFSIVARLGALEKKLEDSEPTVHRVQTREDIAAPLAPVADDQLQTAVNEPPQKTSGVRPLVAQAEWTSVVKKRMNKKKKIRIAAKELTTVVGSASDCSIKASEPVRHVFINKVDKQCTNENIHDYIKKKGITPKDVRRTSKEGWLSTSFKISVPSVNFNDLLKAEFWPSGIRCREWLSYIPRKRIGSANADLNENDAFLSDGLSEEEEDAHDSFATSDAAAAHHSHHG
>Proto2-1_CS1_pol#LINE/Proto2 1402-4287 [Capitella sp. 1]
MLMTPSRLLMLLLLTILIMDSALRLCTWNSRGHGADRLIYINKLLQQCDILLVQETWLHDWELNKLSDDDAISILGVSGMDPQQLLVGRPHGGCAVLFHSSLKISIASVQTNSCRMFACVVNVINSIKFLIFNVYMPCDSVTNVDAYMDIMNEIESIISVHQDIDNVIIGGDMNVDLRRTRSANLRALENLCFNQSLLFCQSFDQCHVDFTYENEATGARSIIDHFCVSENIFNSIVHYLAVHEGDNLSDHAPVFLDIKLNLCNVTQSVSTSQNRVSWHRASSRDILAYKEMLSVCLEGINVPYEALHCVNCSNFNNDCLIHTHSVDKYYDDIVRAMRSSAEVTIPVCKKRGKAGWSTHVKQFQEDAIFWNRIWVENGRPTTGSLSNIRRSTRAQYRRASRWVVRNQDKLSADRMAQALASNNSRDLWGEVKKKANKVRDKPIIVDDADGELEVCEMFKVKYESLYSSVSFNENDMNEFIDQVTDRISTTCAAGSCYHNHFFSVDNVKSAVKMLKSGKSDSECNLSSNNYINGCDSLFVHLSILFNLMFARFSSPNEMLKSFLIPIPKNRKKSLSDSNNFRSIAISSIMGKILDHIVLKVHSNVLSTSDLQFGFKSNHSTTQCTYVLNEVIEYYNSRHTPVYTTLLDASRAFDRVHFIKLFNLLLFRGMCPALIKFLVHMYIRQTLLVRWQNTVSAPFSCRNGIKQGGVLSPILFCVYMDELLMRLKKSKIGCYVGHVYCGALTYADDLTLIAPTHSAMSHLIEICERFSLEYSVKFNSTKSHVVLFNNSSRTHCCQPFYLHGQPIEYVTNALHLGTLIGKDTHAKNLSKLSKDMIIKTNVLYSHYKHCSPDVLCSLFKSYCTSFYGSPLWSLSNINDFIVCYKKCIKRLLNLNLRTRSKYVYLLMHQPDLDTQLMYRFSSFWNNCFKSDNVLIQLCANLSLTSNSVVAKNLKKNISIPTM
>Proto2-1_SK_gag#LINE/Proto2 173-1483 [Saccoglossus kowalevskii]
MVLRCNDCTCGVLSKQVTISIGDLQLCGKCTDKRPDGLTANNDVECVQEYEDDGHKAIVVNELLCFLSNKMDSMANDMLIKLCVDNFSDHDIEIAKRSLYEHCGSSTRFIRRQGHNKKVNNLQDTITLFHEADIHTLPWFVARDLSKLPPIDFNHVDVSGMVRDLKFLRQEINILHDSLSQSTNCALSVASLERNVCELRSDIANIKAKVASNDTCSSTVPKSRDMSLSEDNGCVSHKVSPEKEMAGDPGIADGLIDNVLIGETHPSIKSYANAVITPSTGENVKQTRLRSKSLNAISQPTILESQPGGPTRQPIKSSGLLDEYGFTTVTRRRKKKPPVFTIGEGNCNSDLHVVIRSQLPAKIFVTRLAPDTTESSIVKHIKKTVNIDAKCEKLRSKFDTYASFVITIPRDTVSSVMQPTSWPAGVLVRKYYQSRS
>Proto2-1_SK_pol#LINE/Proto2 1480-4317 [Saccoglossus kowalevskii]
MNSLTISSFNSRGIKSSVNDVRSLCNRCDICLIQEHWLCTSELGILSRIHPDFNSCGESAMDEFNNLRVGRPFGGIGILWRKSLDHVVSIKRFDDPRVLGISIECNNNTSILIICIYMPTDNSDNFMEYLNYLAKVKSIIHNSNTCNSLIIGDWNANVTSPFGRELINFCNENNLVLSDYVHLHTHGEPFTYYSESHGTTSWLDHCVSTINAHDGISSINISHDVISSDHFPLTVRLNIDKLPTIETRRLCGVACNTDNVSVNWDKISSSQLNDYREMSDRLLKEVTIPIESISCKNANCHVASHRDDLHTFYCDIITALNSSTRNIQHTPRNKSVNLVPGWNEAVKEVYDASRDAFKRWVSFGKPRYGPIYELMRKTRAQFKRVFRACRRDEDRIKADKIATHHCNKDFSKFWKEVNSDKVNQFISCCVDGQSTEVDIADMWKDHFSSILNSVKNCESRDSVEASLGNIMFHPSMIIQVAEVKEYIMRLSGRKAVGTDNISPEHLKHASDSLYVLLSLCLTGMLVHGYLPNELLETIIVPIIKDRSGDITSRDNYRPIAVATSMSKLLELILLKRLEDFITTTDFQFGFKSNHSTDMCVYVVKEIIDFYKSHNSPVFLCFMDASKAFDRVNHWSLFKKLIERHVPLFIVRLLMYWYNSQQFYVKWGSVMSDSFGVSNGVRQGGILSPFLFNLYVDDLSIELGNISVGLKINSMFINHMFYADDLILVSPSIKGLNFLVKKCENYANEFDILFNFKKSVCMYNLPSQCGIKRVPNVYLNGKPLKFVSQYCYLGYHFTQDGKDSICMRKQIRGLFARANFLLRRFSKCSLPVKCTLFRSYCSNLYCSYLWSDFTVADFNRIRVAYNNALRIICNVSRSFNSSITETFARLHVDDFQVKLRKMCYSFSQRILLSKNSVLINLLSSDIFFKSRIWQMWRGRFYLRHTV
>Proto2-2_CS1_gag#LINE/Proto2 369-1562 [Capitella sp. 1]
MSETDATPPDDPGDQSSPVTNALLGYVFNCMHFSSVYNLRAVVLGHFSADAIHKAKETLAQHVASSVVGEAFFTTRRGSSARGKAKARTGKAKEKEEMELDDIIEAMEAMDKAGVSVEFHIPAFELHLLPRTRPEDLLSVTFMENVKRLEARVAALDTHAALSTEQMSILKQKVDHLETTAHASGSSCVSPETIPMSSMHFPSLNAINSAGTMSSSMDPTSSAPVYSTRDKPFLEPNHANPPRSYSVALQKNSDGGTAIPWTKVRKTRKSRPINRTDVKNATQQLRTVTGKSARDSELVGSMPAKHIYVSKLNTDITSDHISDYMRKKNIHVRQTRKVSKDEWLHGSFKVAINAEDLERVLDEEFWPERVCCREWLPFIAKNSNGDDPKKNYNDDDE
>Proto2-2_CS1_pol#LINE/Proto2 1426-4620 [Capitella sp. 1]
MPRTWSESLTKNFGQKESAAGNGCHSLQRIVMEMIPKKIIMMMMNNEITQNLKVCTYNIAGFNRCNWLYVQQLCDNNDFVFLQELWLHSSEGHRITESLSNVSMHFVSGMPDDEIHVGRPYGGCCIIWNSKLKCKVSPLPCGNSRVCAIKIDLSDGPLLLINAYMPCDTQVAYHDNQLVFEEVLNDVADLIQISNIDRIVFGGDFNTALSRRASTHTRSLNQFVTNESLSFLSALSCYEVDYTHESDAHGTRSTLDHFIVSSQLVCSVNRVQCDHNALSSSDHTALLLSLSISMPSISNGQSVPRRGPVPLWPKATDAHIANYRNSLSESTEDLTPPYEALRCDSPQCTAHTETILSYYNALISLCLSSGRRSIPHSPVSRSGSRRSVPFWSTHVRPLKDNALFWHAIWKSCDSPATGALTNIRRSTRAKYHRAIRYFKQNDQLARFTRMGEYFVNQGRDDFWTEVQKMRGNNSATPTIVDDCLSEDDIALCFREKYNTLYNSVGYVPEEMARLRQEIEANACRHEGEMCRSHVLSIRDVTIAVSNLKRGKHDGHLGHYSDHLRFAPNRFLCCLSLTLNSLLVHGLVPDEMALSTVSPIPKNKRKSLNDSDNYRAIALSSIIGKMLDRVLIEKCSALTDTSDLQFGFKARHSTNQCSFVAREIIEYYHSRDSDVYITLLDASKAFDRVEYTALFRILISKSVCPIVARFLLNLYTQQQIRVRWGASHTDSFASSNGVKQGGVLSPLLFSLYLDPLLRQLESSAFGCWIGFQYCGALAYADDVVLIAPTLRAVKEQLKVCAQYAQTYQVSFNATKSKLIPLCRNDPLTSTAFSVSLMDEPIECAAQDKHLGNVIGFFNEEEVIDNVIKDFNKRVGMIRSHFKWLAPDCAYHLFKSFCMPLYGSVLWNFSHRSVNRFYTAWRKAIRCILHLHPRSHSCFLAPVCNDVDVEIQLLCRNVRFLRSLERSNNRVVRCCFQLVQNGSRSTVSRSFSKLCDVTQKSRHHIVESVCHPTALFEISNDHEEIAGLIRDLLALRAELKLDQNLNAHDIEFLRDIEFSIQELCTA
>Proto2-3_CS1_gag#LINE/Proto2 212-1327 [Capitella sp. 1]
MNDLKRSSVSSATNDSPMPPIVNNVLGFAMASVQMHAPNEVVKRILCQFSGETITDAKDILWEHAITHNYECIIGKKTNRRDSNLRSEMEAHVDDIVQALLRISKRDVKPVIAVDACEIPSLPSLTGEDGDMRMRVSYLEDTCRELGRTVQQLSDVIQHRLHRPEPTYCSQPSSVEPTYSQSLTLPKTISTDSTHDPLPDGESYTRNMSARHNEHAPSTCVPQQKSVIVPSAAPIDCDGFTVPSHVLNKRRKQARRKRKIITGSNTGDQTLKGATQDANRDLFVYHVDKSATTEDLEHLMTSQKCEVRKVSVTSNDEARFKSFKLTIPASCLKRVFSEEFPWPLNVRVRRFISRRPQDHVRRSQQQDQQHI
>Proto2-3_CS1_pol#LINE/Proto2 1423-4419 [Capitella sp. 1]
MNLKFCTYNSHGHGAGRFSYMKTLLSKYEFLLIQEHWLSTKCLHLFELEIDKCCSHSISGMPDESIMIGRPYGGCSIVWREGLQCKITPVTSNCRRLCAVNVQSNDYQFILICVYMPIDGASIDDYNDVLNEIGNLMSSVDHDNVIIGGDFNTDLVRYNSLNTISLVDFCSSQYLVNCLNIDGVAIDHTFKSKVTGSTSCIDHFLLTENLLSSFVSAGVSHDIDNFSDHDPLYLCTSLSANVTPNEQVNNVHTRIAWHSASSIQIARYKTTLNEMLADVNLPSCTADCIDVFCTAHQQSISKFHDDIIECCTSSALSSIGRPTAVQGSGARPGWSRYVKPVRVEALKWHRAWKERGRPDHGPLYDMRKMTRARYHNAVRFIKKQEQILRDTSLANSMSDLDYNQFWREVKRIKDSRKPVASTVDDFNTRAEICKVFTDKYSALYNSVTFDSSDMIRYLDNINRDLLHDSTASYLYISTADVKKAVSGLKTGKSDGQNQQSDHLINGTPLLFRKLAQLFTAMINHGFAPDSFLLGTLSPIVKNGRKSINSSSNYRGITLSSILGKILDRIIMNRFSGSLYSNDFQFGFKQSHSTVQCTLVIDEVSKYYTSNGGEIYIMLLDASQAFDRVNYVKLFRALSAKGMCPLICRFLAYSYTQQKVRVKWSDHTSEPFEVTNGVKQGGVLSPTLFNVYVDFVFKKLKEKRLGCHLNGHYSGAISYADDLTLLAPTKHALQVMLQEVNTVARDLDIKFNGAKSQLVAFNKQGHIPITISCMGAIVHSVDNAIHLGNSVGINSDCIRVKKCIREMVMHCNSLCTLFPCVDIEVKYRLFKTYCMPLYGCQLWHLNSSNIEKIHLCWRKCLRRLFNLPRRTHCDLIHIICQDVPFINQILNRFAKFLQGIVKSVNIFTRSCLSSVLSGSLSVFSFNVSCLCSKLGIPKFRIPEYNFTARTRQLFFVDDAMQSLGGVIRDLIRLRDCNGLINNGWTTCDFTMFLEELCCN
>Proto2-4_CS1_gag#LINE/Proto2 216-1292 [Capitella sp. 1]
MRSLSNHPTPDLQLVRSELLCYAFTHVNSNTKHSLTECISEFYNAEQIHTARELLWKEYEQFLITVMKKTRRPQVPYDKETARPFADDISQWVFMIANAPNDSSFCQFYALDLTQVPPCRPEEVNIFSLVSRISALEKNDRDRQSMENIKPQRLQPSHPISEYQPHTDQQTNVKIPVPVTASSAPPEETWAKVVNRNKKRIQKATARKEVRAAAKDLHVVVGTAGAKDVKACPPLKHIFVYKVSRDCTADSIRTLMKSNDVDPINIRITSKPSWLSSSFCISIAKDDFSKTFSEGFWPSGIRCREWISHVHKDRNNSNFDATDRAANKDLDDDVFTTPAGGAESLGGFQKDNTNNHHG
>Proto2-4_CS1_pol#LINE/Proto2 1072-4326 [Capitella sp. 1]
MTSVKRSPKVSGPRVYDAESGYRMYTRIETIPTSMQQIALQIRTSTTTYSRPQQEELRAWVAFRRTIPTTIMGSTLNVCSWNSRGHAADRLSYLQTLLDGNDFVFVQEHWLFDDDLHRLCSNEDVNVIGVSGMDETDLLWGRPYGGCAIVYHKKLNCSMNMIALDSRRVCACICKGPSGEKMLFFNVYMPCDTSHDLNTQSKFTDVLDELSSVIYTHLDVDFIVIGGDLNTDLGRHRSMHVEPLKEFCSRHSLAFCIEQSVSSVKFTYYNDFNAAQSTVDHFIVSENLVPLIVDYSTNVDGDNLSDHVPLSLKLNMSFHYSNEPRVHPVCKISWRRATDHNIVSYKERLRVKLNSIVLPRKVLLCPDLDCSSHSTEIDTYYGRLIDAMKSAASECIPRQRKKALAGWSEVVTPYRNKSIFWNKIWVENGMPEVGLIRDIRQSTKKDYKHAAKWVIRNQDNITADRMATKLHSDMNREFWDEVKRVRGNAKDCAGVIDDAVGEDAICDVFASKYEELYSSVSFNADDMVELRRDVDIDIRSKCCEELCYSNHAVTVQDIKEALGKLKLSKSDADPDLSSDHFKRACPELYVHLSFLLTSMLRHTTAPSHVLCSIIRPIPKNRKKSLSVSSNYRSVAISSVLLKVLDHVILKKHASVLSTSDLQFGFKSGLSTTQCTYVLNEVVDYYTRSNSSVFVCLLDASRAFDRVHYIKLFNLLRSRDLCPLLIKLMLNMYSSQSLAVKWQNKVSSSFRCSNGIKQGAVLSPVLFCVYMDSLLIRLKESRLGCYVGNVFVGAVSYADDITLIAPTLKSAQSLLDICEQFASEFHVLFNSTKSNVIVLNNPFRKNYDLHNLVLNNAAIPYTDRALHLGSFIGKDANKFNIKKAMQDLNARVNMLVCNYSFSYFDTLCFLFKSYCTSYYGSPLWKLDVNSLEDFCICWRKAVRKLLGLNSRTRSKFLPHVLNVIEVRSELISRFSSFYLKLIKSENSLVSTCCLLMNETPSTSIVASNLQSLSQYVNKNISEINSHDFKTLRNLIVDTWLSEIDHSTFVYSKLLIELLQMKSHSSPFMSFHEILIMLNFICLMPD
>Proto2-5_CS1_gag#LINE/Proto2 222-1355 [Capitella sp. 1]
MTGTSISTPPPEVKLVHSELLCFALTHAHNSTLTMLAECLNEFYRPEEVLHARETLWRECHDLLKDARKPRRSQTPVDRQTMRPFVDDVCSWIGMLVNNQRCENMNVQFYALNLRRTPPCPPEEINIFSLAARVAALERTRKSCTQRDAPLAVQVHGQSTWDSIPVPEQPRNGEAPSREPPSTAGLHTSKPVAVTAESAGGAPWSTVVKRKTIKKRDEARKQLRDAAKDLRVVVGTEKGTVLKGCRPTKQLFVNRLERCSTDTVKKYMISKGVTPRDVHCTSKESWLNASFRLTVVATDMDRVFDAHFWPVGVRCREWLPNASNKRRASVSTCDDPQDDPPETHYSGMEDAEDHDNAADDAAADDAADDVDDNNRHG
>Proto2-5_CS1_pol#LINE/Proto2 1135-4383 [Capitella sp. 1]
MPISGRSEYVVVNGCQMHQINVGPQFPPVMTHKMTPLRRITLEWKTPKIMITPLMTPPPMTPLMMWTTITAMDSCTKLRLITWNSRGHRMDRMEYIQTLMCRCDVLFIQEHWFLDADICKISEHVDNVEVFGVSGMDDSRLISGRPFGGCAIVYSKSLRCDVSIIKTESRRLCAAKLSLPDGNNFLLCNVYMPCDQLTNQRDVFLSTLCEIDSILSATELNGGIVGGDFNTEMSRLSSHHTRDLVDFCSSNGLDMCCDLDVCQVDYTYENEASRARSVLDHFIVSENISADVALYECLHEGDNPSDHCPVMMHVNVNVEHLPTDRSPILRSGLPWRTVSPRVLGDYGAALHVALTSIVVPNAALQCDDWSCEQHTHDIQAYYDNIVKACLDAAEGTVGRKRKRRGNTPLRRPGWKDHVEPHRERAIFWHALWKSSGSPHDGHVADIRRRTRARYRYAVRYVKRHEEQCRANKLAEALAKDRGRDIWNEVQKISGRKTNRVAMVDGMVDDRDIGELFARKTSEVFNAVAYDVDRMDSMLASLESDIRSRCARSQCYHNHSVSLADVFKAVKCLKAGKKDGTVDFSSDYIVNGPDSLSIHFSLLFSLILKHGRFPRDFALSTVIPLPKNKKKSLKCSSNYRGIALGSVIAKLFDVTILHSNSQVLRCSDLQYGFRKNHSTTQCTFVLNETIQYYLNGRSNVHVMLLDASKAFDRVEFVKLFEVLRAKGLCPLVCRILVNMYIVQKFRIRWNTCQSSWHRASNGVKQGGVISPVLFVNYIDELLIRLSRSGVGCYIGNVFCGSFGYADDITLLAPSIHALKTMLNVCSEYAHDFNLLFNTDKSKYIVFNGKRNHPSVNITWDGKTLNSSSSDLHLGNLFGPRANDHLITTAIKIFYCRFNVLFRTFHFANLDVKYHLFKPHCMSLYGSPLWDYSSTSCDRFYIAWRKSLRLLFKLKSRTHCHLLPLIVKDHPVDVQLHRRFLKFYFKALFSFNTCTRTCAELALRRSESNVSRSLHFISTKYGINTHMLHVTTLPALLSRVRHEPSAGHLTYASALHDFILLRDTHNSPTEHQHFSDIVDYICTM
>Proto2-6_CS1_gag#LINE/Proto2 84-1325 [Capitella sp. 1]
MSGDNTPADLRSRSGSIVDGSEEKDRSSDPCPCNVNASSSVCNSVLGYLVGSLKKSPRDVVKKIALSHFCPDEIKTAKQALWSSSACVPAIGPWKPRKGSSNKPRQEFEIDDIFDALSKLDEASVKPVIHVPALDLDLLPPMNPAQLLPVIFLDKMNEMEAKMAAMQAQIDNLGKREQVSGHGRNEMAHRSTSRSDSRRSTGQQTKTRPAVPNPAGPAPPSMSAGSHAKSPPQDPERWPDRQDTASTSVKRVDTGEEETKQEHSNEWTEVVKRKSKKNPLKERVRKAAKEAEVIVGTKVDEGLSASNPIKHLFVNRLNNYHGVDDMKSFLLKNQVQARGIKKTSKDEWMKASFKISLNEGDFEKVFTPGFWPEGVQCREWIGYVPPVSKSDKKAENSQPVEEVNLTTDDGPTE
>Proto2-6_CS1_pol#LINE/Proto2 1309-4374 [Capitella sp. 1]
MDPQSDMNKLKLCTFNVHGVHNKWTYLQELLVEHDILFIQEHWLRECQFHLFNDNLVNVNFASVTPMDDGLLLSGRPHGGCAVMWRTTIAHRVSPIIHSNTRISAAMIEINNVSYLCCSIYMPCDDNTNIEVYESVLHDVMTIALEHSADHLIIGGDLNTDLSRSHSLHTMSLKLFVSNEDLVIIDDSLGIPYNVDFTFESTTNASRSILDHFIVSHNIVPHVMSIECNHDVNNSSDHVPLTIELNVNTKYVKAESTGTRPKPQWHKATNEDLDAYRSTLDVLLQNIVIPEAALECSSSQCTNEMHREELLKLHDSLIQASLRASEHAIPSSSTDLAKGRPTVIPGWNEYVAPLKSTASLWHFIWKECGRPQNGIVADIRRRTRAQYHRMIRQVKRNEATIRSAKMAEAFHDTRNHRRDFWSEVKKVKGGSGATPATVDGVHGADSIANTFCEKYADLFNSIQTTDEEMSCISDVLSSKVHNHEQADECSGHFISFEDVRTKCAELKSNKHDGYLGQYTDHIKNASHRYLCILSLLLNSILVHGVIPDAFKVSTVIPIPKNKRKSLNSSDNYRAVALSSVVCKLLEKIIMSKFNDVFYSSKYQYGYKEKHSTTHCSFVVNEIINYYAQNNSCTYVALLDASKAFDRLHYGTLFRKLIDKKLCPIVTRFLLEMYKSQLMRVKWCNSLSRTCEVSNGVKQGGVLSPLLFTVYLDELLERLKSTGFGCHIGTTFAGCFAYADDIVLLSPTLLGLKKMLHTCAAFSADYYVKFNPNKTKLVVCNSHSNVSPVVNFLGSNIEVVNDEKHLGTLLGNVSAQTRINEGVHNLLMKVNHFKCHFKTLPSDSAYSLFKTHCMAMYSSPLWDLTDRSIECFYVAWRKSIRRLFDLPYRTHSRLLHLICNDLPIASQLLVRFHKFILSLQNTSNSLTRLCLQLALSGSRSAVSNSMSALSSRLHISRLDMLDLDSSTVYKALFSMHLDLLDEDTAVHALLLKDLINMKFDAITSNEYNLSEICHSINYYCVL
>Proto2-7_CS1_gag#LINE/Proto2 279-1325 [Capitella sp. 1]
MRPTTTNEPDSIYVSKDDKIVIDGLLCYMVHKLHVLNQDALEKVIVSGYSNDAIRASKEKLFKVCPGQRYVGHTGEAAATKHVRDMIKLLQERGTAIPTFVSDSGSLSAMPPVTFDSMDVVSLLRRIQSTQEEVSAMKALMASQSETMGCVTKLTQDLSGRVGNMEAIYVRSEDAPMQDNATEVMQSNEELKTAEDATAMKQVALDPLPATYTQVLKRRPRKKKVVPALVDDGQQVAPAQKQRQAKKSVVGTAACELRTVKTKLIRVFVTGMVHETKPAEMEKMLKEKMNNNTVKCELIKKGERSSSFCVSAECLSADGIYDPTLWPEGSYVRRYYSDRKTSQANSRS
>Proto2-7_CS1_pol#LINE/Proto2 1382-4144 [Capitella sp. 1]
MPIEKMLAEECDVLCLQETWLTKQDLGGLSDLHPGYVGVGEATTDLNSGLLRGRVGGCVAIMWRSCHGHLISEVRLGVDWAIGIEYRSADHHFYIINIYAPYECRDNEPLYLERMAYLSAFIDNLDSTCIYLIGDFNANVLNANSSFAKHLNDFCSDNGYIFSSKMLLPRDTYTYISEAWHTESWLDHVLSTADAHNSIENMSIVYTLSSCDHIPLCLTLKVAALPVLTSLPNSLVNSRIDWTSMSDDAIRQYCRDTGMGLTQVYIPHDALLCNNAMCNEESHQKDLQDLYAAIVSCIKSASSSLLTRGTRSCRPGWNMHVNELHGLARDAYVEWKQSGSSRQGHLFELMKATRARFKYALRFIKRNESAMRADSLAMKLTCNNDREFWKEVKMMNNSRTPLPNNIDGYTGSTEVCELWRQHYSSLFNCIHDNGVYLSPDVMFDNDMIIRPNEVQRAVAKLVDNKSCGLDGITAEHLKYADVSIVPLLAMCFTGFFVHGFLPEDMLSVVIVPVIKDKAGKINSRDNYRPIALASIMSKLIERILLERAEDTFMTVDNQFGFKPKHGTDMCIYALKEVLHTYNALNSTVFLSFLDASKAFDRVSHGKLFRKLEQRGVSSYIIRLLVFWYSQQTMVIRWGDTMSTSFHVSNGVRQGGILSPFLFNVYIDGLSINLNECPTGCYAGSLKINHLMYADDLVVLSPYSAGLQQLLNICTEYGAEFDIKYNAVKSNVMIVQCKGNTQTVFPDFYLCNEIMNVCHDTKYLGHIICDDLSDDADINRQRRKLYVQGNTLARKFFMCTPDVKVQLFRTYCSSMYTSYLWCHYKVASIRKLYIAYNDALRILLRVPRYLSATQMFVEVNVPGPLPALRNIMYRFICRLNKSSNSIISALVNTTLSAVSLNSKIWRFWNKCLSFSSNMILY
>Proto2-8_CS1_gag#LINE/Proto2 115-1239 [Capitella sp. 1]
MAGDIVVCELLCFAVNRIDNTSNDIIIKLCTDFYSPKEIEHAKELLHNACSQSRSDLERLRPRKGPKKAQSDMTDILQLVHEMGTDVPCFVAVNLAKLPVLGMENINLAAMVADIVSLKKQMAELKCFVQRVDTVESNRSPLVATVAAPHIMNPPLDESPTLNDSDSETDETFPKTIDSCVIQPNADTDIAVNESHREALSAPASQTISSGQQQQQQAADQLTSYVDAVNRDEPFSVVSPKRQYKKKAFLSGQHAASNPQRGRRTNSTHRASHEDVVIGSGTQTRSLKAAKHNSSTSNSDGIFVSRLRAGTTFNDMRDHLFRHAGLRLKCVPIRSRNDHLYASFRIVCNAGEMKRLLVPEMWPKGVIARKFVSK
>Proto2-8_CS1_pol#LINE/Proto2 1280-4168 [Capitella sp. 1]
MLVVILIMNLHPQQKSTVRVTSFNCKNVKSSIPDVYTMCCNSDRVFLQETWLSPSEIVILKALHPDFYADGVSAFQDDEQLIGRPHGGIGILWRKTLGAHVNCLKYDGERRLMALSVKHGSHNLLLLNVYLPYFTGSDNDDNYHEFMAVIGKAIGIIGTSPTLNACIIGDFNACTTKNTLFGKEIRLMCDDNGLLLSDVTLLPPDSFTFYSEVHQSTSWLDHCVSTLQAHLSITDINIAYDVLSSDHFPLAMSFELPTSELSGPEPVRSTTIRDNTASWERATKSDIEAYHRRCSPLLSSIAIPHVALLCSDAQCDNISHREAISKLYRDITNAMLTSSAASIPTKRQQRHKPVPGWNEFVKEHHAAARLSFTLWVSAGKPRQGSLHEQMSRDRARFKFALRRCKRDEAQIKADKLAESFLPLDNTAFWKEVQAQSLRSTPLVASVNGTSGEDAIANMWAKHYGEILNASDTDTSRKRVIKELHAAYESAVSEGSLNNSLFSPREVEKSIAKMKRGKAAANDGLSAEHLIYAPSQIHVLLMMSFNLSLTHNYLPPFVTESTIIPIIKDKSGNGSDIGNYRPIALSSAITKVLESLILCKAASFLSSSDHQFGFKSHHSTDMCVYALKEIVRYYLSKSTPVFACFMDASKAFDKLNYFTLFEKLLKRKMPVLIIRILFYWYCTQQIRVKWGSAMSNYFNVSNGVRQGGVLSPVLFNIYVDDLSFMLRDSRIGCSVSESICNHLFYADDLVLLSPSEKGLQHLLNLCYNYSISHDITFNPKKTVCMLFKPRTSTFKKHCKVSLGGNVLSVTPSCKYLGVFISNDCSDNTDLARQLRSFYVRSNYLSRYFSACTPAVKCSLFTTFCGNIYSGHCWSIFKKSAMRKLTIAFNNSFRRFMFYPRFCSASGMFAFNHVKSLNEILRHAIFNFQKRILNSSNNLICSILSCTVFNSSLWHHWKSVLFMN
>22004035_Fsc_gag#LINE/R1 gi|22004035|dbj|BAC06468.1| gag-like protein (22004029, 22004031 & 22004033_Fsc close) [Forficula scudderi]
EAICKACNNKAKLEDIRVNAPKLSLHNNMTSIVNLPRVLADELTKKKKIRIGWMRCRVLNIYTPKKCYKCQNFGHMSYECEGNNEQMKGKCLKCCQAGHVAKECRNTPMCYKCGVEGHQASSMMCPVYRSLVAALKDENKKKKPIRKA
>22004038_Api_pol#LINE/R1 gi|22004038|dbj|BAC06469.1| reverse transcriptase [Acyrthosiphon pisum]
TGTLQVGLGWQAAGETAVVKARPAPRPHGPRSPNQYGFRCGRSTEDATERLLEMVHGAALGAVQHRDICVAVSLDVRNAFNSAPWPMIDAALRGKPVPPRLISMIRSYLKDRSILVGELLLRRDMYVW
>DMRT1A_gag#LINE/R1 386-1909 [Drosophila fruit fly genus]
FYFPRSAGDQQAKVPLLYLMDRTGGGSAPDPNDPFRRSGRLSRSPIRGVGTPIQGXGGEQAGPPPPKASDCSAAVEVETLATTVSTTATSLKTMDFISVPAQRAGAKSPSGSPHRSPELTTTLQNEDLQGILDMMKAKITAILSSFETRRHVTSEDRGVLVDLSALNNRAIELQEGINKKPPPRSTATQTEAEKTKRSQVAPPRQALPNVQVRKTDNHRSAAKSTGKALPTTADSKPESYASVAKDANKDEEWAKVKPKRLRKKPEALILKKTGEVTYSDMLRKMKAEPSLTEFGKHVRKIRRTQQGELLLELEGKASEVIPSFKNELEATLKEIASVRTGAHRTALICSGLDETTTAQDLHNSLVSQFQGIRLEPEDVRGLRRMRDGTQIASVLMCANDAIAVINRGVVTVGWSRCRIAQDVRPIRCFRCLEFGHRAPYCKSVDRSDCCLRCGEHGHKAKGCVAPPRCLICSSDVDKNHATGGFACPTYKANTKGANSRQNDARRN
>DMRT1A_pol#LINE/R1 1797-4859 [Drosophila fruit fly genus]
SAAVTWTRTTRRVVLHAPPTKPTPKELIAVKMMPEEINIIQLNVNHCAAAQNLLTQTAKERHADVVLLSEPYLPGVGNSGVLLDETGKAAIKCTSRLLVEEWDTVPMRGIAYAKIRGIHFYSCYAPPSDSPEQFEDMLEKLVNHASGRRPTVIGGDLNAWATEWGSRISNTRGRAVIDAMNLLDLVLLNDGFKPTFNNDRGTSFIDVTFVSRVLVASSNWMVHEDITLSDHNLITFGARTMRPSPKQRRCALGPVWDIRKLDEDMLAYQIEGMESIIGHAETMVTALMDRLRAMCDAVMPRKRNTKRKPPVYWWSDSLHQLRTECIKARRQAQRSRGQPHHSQCIEVYKAKRTELKNGISAAKANAFKDLIDSVDDDPWGLAYKVVRKKLNSAGAGSPQDPAALANIVSELFPSQHTLWQPAVDPPASDFPCITSCEVVEAAKRIRPNKAPGIDGIPGVIVKAAATARPEVFRDTFQQCLLDGVFPKRWKKMKLVLLPKGKGPANVPRSYRPLCLLDIVGKLFERILYARIELITESPTGLQGQQYGFRKGKSTLDALKSVTDAARKALDGNRWLGGSKKYCAIITLDVKNAFNTARWPIILGAMRNLGVPDYIRGVIGNYFRDRVLWYVTEDGPRSHQVSAGVPQGSVLGPILWNIMYDGILSISKPRGVELHCFADDVAITAVAKTIPELQDISNVAITAAIEWLEKVGLKIAAHKTEVVLLSSRKSVECMRVEVKGVEIASAETLKYLGVLIDRRLSFKAHARYASKKAAMTAAALARIMPNVGGPRLPARRLLVAVSKATLLYAAPIWSCVSTKKTYLDSARAVSRTMALRLIRGFRTISDDAAHALSGITPIDLDIKGKYLASEGYTQLEIKEWIRGVWQTRWQESQRGRWTYKLIPQLTEWADCEHKTVDYHMTQFLTDHGCFRGYLCRFRHVDTAQCLYCTDAVETAEHILLHCSRFAEERAQLVALAGSPLSPRGLVAAMMADKIVWDGAHVIIVTMMKRVRKDEMANRNYR
>DMRT1B_gag#LINE/R1 385-1896 [Drosophila fruit fly genus]
AILQLMDSAVGGSPPDRNDPFRRSPRLSRSPTRGVGNPTHGDGISVPSVARGEHAGPQPPLTSDCSDAVEVENLAPTASTTATSQKTMDHIAVPSQKTGGKSPAGSPHRSSDLTAALQNEDLRGILTRMNGKISTLLSAFETQRHVTRETKGIASELSALNNRALELYKGTTSEHRLKSSATQTEVQKPTKKAPQNAQVPKVQVPKVQAPKPSNPTLGGNGEEKATSIPNESKPGSYASVAKNASTGAEWTKVKPTRLRKKPEALIVKKTGEASYAEMLRKLRSDPSLSELGSHVRKIRRTQKGELLLEVEGKASESVPKFKSDLEAALNDLASVRTGAQRIALSCSGLDEATTAEELHSCLVAQFQGLQINPEDIRGLRRMRDGTQIASVLLNANVAIPVLKQGTITVGWSRCRITQDVRPTRCYRCLGYGHRSATCKNTDRADCCLRCGERGHKAKGCAAAPKCLICSSEVDRNHSTGSFACPTYRATLKEAKSHLNAHSY
>DMRT1B_pol#LINE/R1 1859-4843 [Drosophila fruit fly genus]
KKPRATLMHTHISVVQLNVNHCAAAQSLLAQTAVERNVDIMLLSEPYVSGSGQSSMILDETGKAAIKCCSSLHVEELAALPMRGIAYAKLKHVHLYSCYAPPSDTPDQFEEFLEALVDHARGRSPKVIAGDFNAWAVEWGSRTSNTRGRAVIDAMGMLDLILLNDGRKPTFNNDRGTSFIDVTFVSRGLVDNNNWMVHDVMTLSDHALISFSLSPEGMPRRRQSRAVGKAWDTRKIDEAMLAYQINSLEIPSGDAESMAAGLMNMLGRICDAIMPRKNKAQRKPPVYWWSASLSQLRSDCLRARRMAQRARGSTHHAELLEAFRRKRLEFKHGIAAAKARSFKELQDGVDSDTWGLAYKLVTKKLRRRAATPSDPGVLANIVGELFPKQTTLWRPTEAAPAPDFPCVTELEVAEAAKRIKPNKAPGLDGIPGAVIKAVALGRPEIFRATFQQCLLDGIFPTRWKSQKLVLLPKGKGPAHAANSYRPLCLLDIVGKLFERILYTRIEAITESINGLGSHQYGFRKGKSTLDALSAVCNIAKTAISGDRWLGGRKEYCAIVTLDVRNAFNTARWPVILAAMYRMGIPEYLRIVVGSYFRDRVLWYDTEDGPKRYRVSAGVPQGSVLGPILWNIMYDGILGINRPVGVELHCFADDVAITAVSKTIAGLEDKCNSTIGAAIRWLEKAGLAIAAHKTEAVLLSSRKKVENMLVSVKGTQVTSQESLKYLGVMIDRRLSFKDHASHASKKAAITASSLARLMPNVGGPRHPARKLLVSVAKASLLYAAPVWSNATGRVSYLKGARSVLRSMSLRLIRGFRTISEDAALALAGLPPIDLEIKALSLMRSGASRQEAHEWLLGEWQSRWQTSRRGRWTYQLIPEMTVWAECQHKCLDYHLTQFLTDHGCFRAYLLRFRHVESAQCLFCVDGEETAEHVLMHCSRFTAEREQLKTLSGSPFSPSGLFAAMLANRGAWERGHSIIINMMKRVRSDEMANRVDV
>DMRT1C_1_2376#LINE/R1 1472-2373 via tfasty with R6Ag3_gag, 1 frameshift and 2 stopcodons. [Drosophila fruit fly genus]
APLQPRRTExGSAKKAQRSDHQKAAGPKRLPRAPPQATAAGNKTQPRLQHPPGPRRKRPPRERPDALVITPSAGLPYSEVLSLVTRGQDARLRAIGENVSRVKRTAKGELLLELRASAQDLTQKLKMDMGAVLGDRASLRALTQSKVFLIRDLDELTTEDELRRVLESRLxIPAAVVAIKSLRQTQYGGKSAIIAVPANLADPLIKRGKLRVGWSQCLIKELEPRQRCFKCLEEGHIAAHCRSAVDRSQCCFRCGSAGHKAAECPNEAKCFLCASRGSQATNHQAGTRKCPLAGKGAPKAP
>DMRT1C_gag#LINE/R1 1152-2373 via tfasty with I-1_AN_gag and DMRT1B_gag, 2 frameshifts. [[Drosophila fruit fly genus]
GPKDPTPEPERWHPQEAIRSDIPPTRAQPAKRVKTPQLEIEEMGAILDDLLTKVNHNGVRSVNQAMKNSFARLKELQLKLRTRLPEAENSHVGRTARADASQQTTPKRPSSHEEPSKGPRRKPSDPTTRRQRDPSAYQGLRPKPLQRETRRNQGLQHPPGPRRKRPPRERPDALVITPSAGLPYSEVLSLVTRGQDARLRAIGENVSRVKRTAKGELLLELRASAQDLTQKLKMDMGAVLGDRASLRALTQSKVFLIRDLDELTTEDELRRVLESRHRFQLAVVAIKSLRQTQYGGKSAIIAVPANLADPLIKRGKLRVGWSQCLIKELEPRQRCFKCLEEGHIAAHCRSAVDRSQCCFRCGSAGHKAAECPNEAKCFLCASRGSQATNHQAGTRKCPLAGKGAPKAP
>DMRT1C_pol#LINE/R1 2376-5304 via tfasty with R6Ag3_pol, 2 frameshifts. [Drosophila fruit fly genus]
MMRLIQLNLNHCTAAQDLLVQTVRERRVELALLSEPYRTADSPDWAFDRAKKAAIWRCSREAQQLTDVFSDIGFVRAKVGRWWVYSRYARGRTQVLIAGDFNAWSESWGSSTTNARGRMVLEAFATLDLALLNQGNRHTFRRAGLGSVVDLTFTSGSSFRLTRWRLSEEYTGSDHLAIICDLGCPSSTQAQLAAQARIKYKTDTLDTQLFREQFLPSVSGEGAELTAVALMRQLKTACDDSMQTSRTHSQQRAPVYWWNQEIETARRECLSARRRYQRARGAESFAERQSEYRARRKALKLAIRESKRKCFLDLCDSADSDPWGSAYKVVVKQAYTRTPKLLDPAMLRSVAEHLFPLMDRLRPADPATGDHVEADATVSSEEILELAKLLKDGKAPGPDGIPIRALRLSLPPANSFAKAFTKCLTEGVFPSCWKVQRVLLLPKPGKPPEEPISFRPICLIDGTGKLLEKLVCIRLERAIADAGDLSRSQFGFRKARSTVDAVNRVVEVAAQAIEGTRWKGGSKEYCLMVTLDIRNAFNTARWDRILEALIGFGVPAYLVRIIRSYFSDRVLLCESSEGVFRHQVTGGVPQGSVLGPLLWNTMYDGILRLPLVGRSEIVGFADDVALLVVDKHPGKAEEKCNQNIRAIEQWLSSMGLELAPEKTEAVLISSRKAVETATVEVGSTSVSSSRAIKYLGVMIDTRLSFREHLAYASSKAAGVNRALSTIMLNTRGPKQASRRLLTSVTRATMLYAAPVWAKALETESYAQGLNATHRLSALRICCAFRTVSNEAALVIAGIPPLDLLAQENKVVFNQTHGRSLSPCAKRSIRAEARQHTLETWQHRWNNELKGRWTHQLIPNLKPWIERKHGEITFHLTQLVSGHGCFRSYLKRFGHEEADDCPWCGSGRSETAEHVLFSCDKYARERSSLETVLGSRLNADNLVPFMLQGEAEWQAVNSFAAAITTELRRAERARRVHE
>HOPEBm2_pol#LINE/R1 gi|28569894|dbj|BAC57926.1| reverse transcriptase R1-5_BM_pol is similar and faulty. [Bombyx mori]
MDHTYRFLQGNMNHSAGAQDMLLQTMAEWSIDVAVVAEPYFVPPADDCWFGDVDGLAAIHIRRTAMVPPLAMVTRGPGIVAVQLENIVVIGVYFSPNRPTVEFERFLDGLEVIARHLAPRSVILAGDFNAKSVAWGSPFTDARGRLLEEWAVAVGLCIVNRGSIATCVRWTGESIVDLTFASSPVARRILGWRVVVGAESLSDHRYIRYDLSAPAPAPAAGARGVDPPQSASRSFPRWALKLLNRELLVEASMVAAWAPKRPQPVDVETEAEWFRGAMHRICDASMPRVGSRHSGRRQSPWWSPEIARLRAVSIRASRRCTRHRRRRRLRRDEPVAFAEEEARLHREYRAAKDALRLAIRRAKEQNMERLLEALEADPWGSPYKMWADKLVRGKLRPWAPSMTERLQPQQLRDIVSALFPQEREGFVPPAMGGPSDTVDGQAPAEVPRITEAELRVAVVKMTAKDTAPGPDGVHGRVLALALGALGDRLLELYNGCLESGRFPSLWRTGRLVLLRKEGRPVDTAAGYRPIVLLDEAGKLLERILAARIVRHLVGVGPDLSAEQYGFREGRSTVDAILRVRSLSDEAVSRGGVALAVSLDIANAFNTLPWTVIGGALERHGVPLYLRRLVGSYLGARSVVCTGYGGTLHRFRSCRGVPQGSVLGPLLWNIGYDWVLRGALLPGLRVICYADDTLVVARGDDFRESARLATAGVALVVGRIRRLGLDVALNKSEALWFHGPRRAPPVDTHIVVGGVRIGVGVQLKYLGLVLDSRWAFRAHFAELVPRLMGTAGSLSRLLPNIGGPDQVVRRLYAGVVRSMALYGAPVWAEPRNRATMARFLRRPQRTVAIRVIRGYRTVSFEAACVLAGTPPWELEAESLAADYRWRSELRARGVARVPESELRARKAHSRRSVLESWSRRLANPTWGLRTVEAVYPVFDDWVNRGEGRLTFRLVQVLTGHGCFGKYLRRIGAEPTTRCHHCGHDLDTAEHTLAVCPAWEVQRRVLVAKIGPDLSLPGVVASMLGSDESWKAMLDFCECTISQKEAAGRVRESSPHYAETRRRRAGGRDRGRIRDLAP
>HidaAg1_gag#LINE/R1 gi|28569884|dbj|BAC57919.1| gag-like protein [Anopheles genus]
CFLHKGEQVSVVKMSFSSQMQNALGLTRSMSADTSKTSVGKQLPASGIPTLRAPMAAGNAGSVVSKTVEDLQRSLAAEKEEKMKLTVLLQELQAQISIMMKKSRETKEEARRDKEKAIRHREEYRRDMALIREENTKLLAQLMAMKVVTTTAGSIPSASLSQRQQSSPQPSMASVVANGDTASTSHRVTLTQSQYRRAPISNFVESDGIWREVTRRKSRRSDNRRNERESTQYQQSVHQPQQSSRDQQHGAQHRPQTTRPNRQDIIEVTSFTGKMWYQVYKQIREAPEMEKMNEKLHIGRRTAKLNLRMKVARSIDSSEAMARIQGVLRDEGSVRVLTQMTEVIITNVDPLANDGDIRSAIGNVTGSASSIATIQLWQLSDGTQRARVCLPLAHAKLIIRLRLKVLYTMCAVKEAPHTPIEKLRCYRCLERGHVSRDCHSPVNHSNVCIRCGTSGHLAATCEAEVRCASCAGPHRMGSAQCVQSNSQ
>HidaAg1_pol#LINE/R1 gi|28569885|dbj|BAC57920.1| reverse transcriptase [Anopheles genus]
MMITLQINISNCSTSQNLMLQAAKEQHADVILVSELYRHPPNNGNWAVDSSGRVAVVAAGSRPIQRMWGSAVPGLVAADIGGITFISCYASPRMTVAEFEEFLNAVEIEVSAHPNVVLGGDFNAWHEAWGSARTKRKGEELLNTVEQLGLIVLNRGNTSTFTGRGIAGESVIDVTFASPSIVRYNTWEVLKSYWYSDHRYVRFSVDSSSVLGNGIQLHRHQHQLQPQQRRFHRQSPAHRRKPRWRRAGRRWKVGQFLPESFCFALEAVHFAEIARTPETLQVALSRACDVAMERVSSSTPYYQTKPQVYWWTPERAQLRELCKEASDNAHSRVDPDERAAASEIHQERRSELKRAITTGKGQLFQQQIDEVNANVYGSGYQVVTSHLRGSRTPPELDREVLERIVTDLFPDHNSFDWPMPTETSSEPYHIRPVTDLELERIADDMCSRKAPGLDGIPNIALKTAIKKHTAVFRSIYQGCFDRGEFPAHWKIQRLVLLQKPGKPPGESSSFRPLGMLNGLGKVLERLILNRLNEFLENGETSHLSPNQYGFRRGKSTVQGILRVVQAGRTAKSFNRTNGRDMRCLMVVSLDVRNAFNTASWKSIAMALRSKEVPASLQKLLQHWMTDRQLVFDTDDGPVTRNLSTGVPQGSILGPTLWNVMYDSVLDVQLPEGAEIIAFADDLLLLDPGITPEAASQRAEEAVSAVNLWMENHCLELAPAKTELVTISSKRQGNINVPVVINGVERRTTRSIRYLGVVIDNQLSWKSHVEYCTTKALRTAKALGCLMRNHSGPKCAKRRLLASVVDSILRYAAPVWHEATKNQECRRMLQRVQKHCAIKVSSAFPTVRYQTAVVLASMIPICLLVQEDARCYQRQQEAGGALSAGILRAEERINTMQSWQEEWDADASQADASRFVRWTHRVIPDIAAWHFRRHGEVNFHLSQVLSGHGFFRDDLCRMGFTPSPDCIRCTGVPETAEHAMFECPRFAEIRQKLLGEANTDAITPETLQFHLLQSQEKWSRIAEAAKQITSALQRDWNEERARLAVSSTLSPSHPVGPSDRNQVIAARRERRNARRRERRAREREAQQQNPSLVFSASSEATEGRESAHPERREQVRPQRRIRQHMPQQKEVVELSDVTQYATAISEDVYSSNPIQGGLTAAESAVATETEISSR
>KagaAg1_gag#LINE/R1 gi|28569890|dbj|BAC57923.1| gag-like protein [Anopheles gambiae]
LRIHLLRWLNEGRWQEIRAERRQQQQQQQQLQTTSIAGGRLSVDDHQPLQQKNLQQQRREQLNKEQHRLARKQPDKIYVAPAAGVTYFTLYQKVRLNPNLMEENSQIRRGNRSTRDHLRLLLKQGADAGAVLGKIHEAVGESGTARVVADMGEVIIPNIDMLATEADIRKALQIALEKEAMLALINVWEQRDGSLRARVKLSRSDANHLIDKRLIIGFSSCKVREAPKPSAESRRCFRCLERGHMVRECQGTNRSSLCIRCGAANHKAVNCTNDVKCLLCGGPHRIAAASCAVTSMTC
>KagaAg1_pol#LINE/R1 gi|28569891|dbj|BAC57924.1| reverse transcriptase Ag-R1-6_pol over 90% identical and with errors. [Anopheles gambiae]
MDILQININKCRIAQDLALNTMRVEKADVLLLSELYAVPQNNGNWVVDRDKSVAIVTSGVRYPIQRIRSVTVLGIVVADVNGITIVYYYVKPNVGVRQFEEIMERIDILIRGHPRVLLAGDFNAWHTAWGSERTKPKGIALLQLVNGLGLEVLNIGTSHTFRGCGSARPSRIDVAFASPSICRPDLAANSATCWRILSRYSYSDHVYIRYTVGEQPPREQQTGTARRQRTAVRLAGTRWNTRQFDPTLFESALRSTRFEDRATHAKSRIESLTRACDETMSRVFPSQDHTGRPAYWCTPAIEELENECRIAEQRQLASPTDPDISALDRQARHALKTAIRASKKQFFDRMLQALHDDETGQCIRKVLYRLQPSRTAQDRDPVVLKSVVSTMFSDHSPAEWPTEDKHEIGNRVPLREVTDLELQIIASGMQPRKAPGLDGVPNAALASAIKNYPGSFRQVYQECLDRSCFPEQWKKQRLVLLPKPGKPPGDPSSFRPICLLNNAGKTFERLLLDRLNEHLEDSDNPQLSEYQYGFRLGRSTLLAIQQVVNAARRAMSFGRTNNRDRRCLMVVALDVRNAFNTASWQCIAEALRDKGVPLQLCNILQDYFTDRELTYDTTDGPVTRRVSAGCPQGSMLGPRLWNVGYDGVLRLELPEGAQAVGFVDDLAIVAAGTTPEHAAAVAEEAVERVHAWMRHHLQLAPEKTECVMISSLRRGHPEIPIRVGGLEIRSKQAIRYLGVMIHDHFLWRPHVTMAVEKANRVVKVVTNVMRNHSGPRVAKRRLLAGVSEAIIRYGAPIWAEATDRQWCQRMLASFQRPLAQRVVCGFRSISYSVAVLMPRLIPHPLLIKEDARCHQRYLADPEASRAVIRREERAVTLEVWQREWDANASNPGASRYARWAHRLIPEVHSWMAQKRGEVDFLLAQILSGHRFFREFLHVCGFAPSPECPACTGSVESVAHVLFYCPRFAEVRRDLLEMGVDGSITGENLGQMLLKSSDSWTRIQEAARRITTVLQLRWREDKAALNALANSTSAEAAVNAEQMQDDPAAARRAARNRQARARRAQERAEQLGDVELVSAFRQLYGPAASDAIASIPAAVPLLLEVTTTVDHTPVTAAVAVAEAATATSPAAEVAPRIAEVAPFPATNGMAPPLSPILSPRRRRQAQRQARAHMLPDRQQNGRAVSSAEELERRRREMERTRRQRQRRARDSQAITIHFSPLPSDEIQERRSTLTAEEEAAISMQATSGR
>LINER1-2_NVi_gag#LINE/R1 215-1753 [Nasonia vitripennis]
MDSELIITLPQAGQALQPTPDVGSDRVKAPVADAGSMDVGGSQLTQTRQEVIEVGHSALKGRLASSDASGCDGVINRGMHEVWSKIQTADRAEEELMDKIQNHLDKMDAVVGPAKNIHKSVKDDMRKVMSFWKRLISVREASSKTKSSFGLMMSNSSRTSLTSEEKREVETPRKRKERSPTQNETNKKRKEEDKTPKHGQSAPLATTSSTTQCPPPTTGTLPPWQRVETRKKKKKKEKEDDKINNGVVDQKGTRKSKPPRARPTRPEALIIKATDGKSYADILRKMKADPKLKMLGDSVNRIRKTAVGDLLLELQRTSEGKATELRQAVQEVLEEGVTVRTLQDVEVFEVKDLDVLTTKEDIVEALRREFQDSGSNAVEETAVKSVRKAYGDTQTAVIQMPAKMAQQMIAKQKIRIGWVVCRIREIKRNARPLRCYKCLGFGHIGKNCTVTQDRSNHCYKCGVEGHNARDCKNKPSCVLCQERGATEKSDHAAGSYTCPVYRAAVEKLKKRR
>LINER1-2_NVi_pol#LINE/R1 1753-4776 [Nasonia vitripennis]
MKIVQLNLNHCETAQDLLNQYVHETEVDVAIICEPYRALDETSWETDDTGRAAIWACGNVAFQEKMLTSEEGFVRAKIAGIHVYSCYASPNAPIEQFERQLDRLVQDIAGRKPVIIAGDFNAWAVEWGSQRTNQRGRVLLEASALLDLVLVNQGSTNTFRRGDAGSIVDLTFVSSCLIGSIDKWTVSEHYTNSDHQAIIMEVRKSEQRPSASTRTNRVGWKTKDYDKEMFLLALEELQLSGTANSKAEQVMGNITRACDAAMPRRVPNCRRPPVYWWDKEVESARSECHRTRRREQRARKKYYKTGRGQEIVDARGQEMKDAKRKLKKTIRENKRRCLKELQDEVEQDPWGRPYKIVMKKIKGSYVPPPKCPELLHRVVTTLFPRQLEEPSVIERGANEEAVPPITIKELLAACRRVGNNKAPGPDGIPNIALKHAIHAHPEVFVDLYNACLEEGTFPTNWKKQRLVLLPKGKKPPQDSSSYRPLCMLDTPGKILERIICVRMDHFIEGKGGLAEHQYGFRKNRSTLDAVSLVIDTAQTAIEGKRWKGGKKKYCAIVTLDVKNAFNSAKWSEIHEALRKQDVPLYIRRMMSDYLKDRILLYDTEDGTKTYKVTGGVPQGSVLGPPTWNIMYDGVLRLQLPEGATVVGFADDIAVVVVAKHKEEVTEIAEEATRIIHEWLTETGLELASHKTEVILISSRKKMEEIKLTVDGHEIASQPTIKYLGITIDARLTFKQHLEIVSDKAAKVGAALSRLMPNVGGPTQKRRLLLASVTTSIMLYGAPIWADAMRVKSYARMLTTVYRRSALRVASAYRTVSDNAVCIIAGMPPIDLLAMESKEVFQTKRRTSDKTQKEIWDAARKKTMAEWQTRWDVSDKGRWTHRLIPKIEDWTGREHGEVNYYLTQFLTGHGCFRAYLHRFKLDDSPNCPACLDANEDAEHVLCDCSRYQMEREELECYLQTRVTPESMMTTMLTSEDGWNAVNNYVRTILKKVRNDEEKRRQRQGETAE
>LINER1-3_NVi_gag#LINE/R1 485-1870 [Nasonia vitripennis]
MCWGHVSCPHRRGDPGGRTHAGMKKNAYNMGTTNELGENSQENLEVETLRVPTTQDGGYPIHKSSSSTSIGSAMSAAGYRYESGTVGEESQTTREWLQAHASLRDKIREVRDMTREMTKTLDKQKGVNSKIKDGLPLIGSMLIEAVTLLDKMEDVVKRQPLQQPRADNAKSQKTAKSKKRVRASSDGGGGTPAKKDKKDVSAPSTSRDSEGNGQTSHGQTQWEVAAGRKAKKKQKDKPEQTQPKKREEKVPRQRTDAILIKPESGKTYADILGQMKAHVKPEELNTEVKFVRKTRQGGVLVGVGKSNDKMKSLQKAIQDAIGQVGTIENKISKITLEIRDIDGLTTKEEVNSAIAAVTDCGEEDVKIHLFEPNTREQRMAVELDQTKAAALLKKGKIRIGWVNCRVRVRASVTRCYRCLGCGLXMHRXXXXBVFFAKTPRRLRTGRCTLQAPERAQSSGRX
>LINER1-3_NVi_pol#LINE/R1 1893-4812 via tfasty with LINER1_pol, 1 frameshift. [Nasonia vitripennis]
MARILQGNLHRSRLAHDLLTQHVREQKVDVLLISEQYKNLDPPFWVSNDEKTAAIWVPGRGLANTGTGEDYVRGRMGRITFFSVYLSPNLTAADFTRKLGALEDAIREVPGEIVIGGDFNARATEWGMPTTNPRGRAILEMAARLTLIVANEGNTTTYRRTGFGESIPDVTFASEMTIRNIRDWHVTEEYTASDHQYILFNINEDRQTSTRRNHSRAPRWNTRRMNRETLAELIQSANLPSNGIPHELGGRERAETIVERTTNLITEICDATMPRVSTSHQRRPVYWWTDDIAELRKENFHARRRAQRAWKQKRPEARDLSKRQDESRKILRDAIKESKRRCWTKIIDDVEKDPFGDGYAIVTRKMGEMKRNQSKEPIEAEKMEEVIHRLSSHTTHQTPEKRHKSNGGREEADFTGQTHRVSVVPQPELLLEMYNQSLVQGVFSSRWKRARLVLIEKPKKEADTDTSYRPLSLLDTMGKTGEALVKPRILRAVREAGDLSDKQYGFRKGRSTIGAVREVTDTVKKVEEVRHATRDIVILVTLDVKNAFNSARWTDILAALESFGMPRYIMRLTEDYLRDRVIEYDTKEGHRRRPITAGVAQGSILGPDFWGILYDGLLKLEMPGDVMLVGYADDVAAVITARNVGIAQAKLNAIMSRVLWWMANHGLTLALDKTEIVLLTGKRIPTIIPMKVGGETITTKPSAKYLGITLDTKLNYGEHLDRVCKKATTRIAQLSRLMANVRGPRPTVRRLLMATTNSILLYGAEVWADAMTMNKYRKKIMAVQRRGALRIACSYRTVAAEASMVIAGVIPVDLLAIERKRIYEARLASSSISIAVEEREITMRNWQTRWTDYPKARWTRTLIKDVGPWVDRKWGEVNFYLTQFFSGHGYFRSYLFAMNRVATPGCKYCGDERDDVRHTFFDCPHWAEKRRVLELTIGAFTPETVVETMLGSKQNWDEITAYVETVLRAKNND
>LINER1_pol#LINE/R1 1593-4612 via tfasty with DMRT1B_1859-4843, 1 frameshift.  [Nasonia vitripennis]
MKIVQLNINHCATAQDLLSQYVRETGIDIAIVCEQYRDLDKPSWDMDSTGKAAIWACGDAAFQEKMTRRNEGFVRAKVAGVHIYSCYASPNTSIEQFRQLLDQIVQDAVGRKPVLIAGDFNAWAVEWGSQRTNERGRALLEAFALLDLVLVNQGCSYTFQRGDAGSIIDLTFVSSCLIGSVRSWMVSDHYTNSDHQAIIIEIRISKQRSNGRATTKRVGWKTKDYDKETFLLALEEIQLSGSANDKVEQVMGNITRACDATMPRRAPNNRRPPVYWWDKEIDAARKECHRTRRREQRARKKYYKTGRGKEIVDALNKEMKDAKRILKKKIRENKRRCLKELQDEVELDPWGRPYQVVMKKIKGGYIPPPKSPELLDRIVTTLFPLQLEVTAIPEAEANDETIPTITTEELLAACKRIGNNKAPGLDGIPNIALKQAIQARPDVFVDLYNSCLEEGTFPKNWKKQRLVLLPKGDKPPGEAASYRPLCMLDTPGKILERIIGVRMDQVIEKPGGLAEYQYGFRKKRSTLDAVSLVVDTARTAIEGKRWKGGSKKYCAIITLDVKNAFNSASWGKIHEALRKKEVPDIYIRRIMSDYLKDRTLLYDTESGTKTYQVTGGVPQGSVLGPLLWNIMYDGVLRLELPEGATVVGFADDIAVVVVAKQKEEVTEIANEAVSIIHDWLKQTGLELASHKTEAILISSRKKIETITLSVDGHEIDSQPTIKYLGITMDARLTFKQHLERVSNKAAKVGAALSRLMPNVGGPTQGRRLLLASVTTSIMLYGAPIWADAMLVKSYARKLSTVYRRSALRVASAYRTVSEDAVCVISSMPPIDLLATERKNIYEENRRVDNTQKEVWKSAKEQTLAEWQRRWDSSGKGRWTHRLIPRIVGWTNRRHGEVNYYLTQFLSGHGCFRAYLHRFKIEDNPNCPVCLEANEDAEHVFCNCSRYEMEREELERYLQTRVTPESMMTAMLASKDGWCAVNNYVRTIIKKVRNDEENRREGQGETAE
>MinoAg1_gag#LINE/R1 590-1957 gi|28569866|dbj|BAC57907.1| gag-like protein [Anopheles gambiae]
MPSALRSGGLPAHRLSSSLELKQKKSATGTNLPSSPEMLILRQNLEETRKKNESLQEQLTQLRWLMEEKLREQREDAQRREEEARRREEAAKADNEKLRVEQQETHTTLIAISAQLRDLQQKNQMKRQQQHQPPQQPGPSTSAVSLRNVEVQAQPEEDIDHSSFVEVVRRKPRGINSGKSSSQQREQQQRSLQQQQQQQQQQQQQQQEQQQQQQQQRKIRRPKADLIEVVPQEGLTWDSVYRKVRDTVRDDPAHKNLEEHIGMGKRTRADLLRIELSRSADSTLVLQEVQEIIGGSGVARVVTEMTELLVTHIDPLAEEQELKAALKEELQVNAGVTAVSMWQLFDGMKRARLCLPTKAAKQLAGRKLRLCGCISSIMEAMPVSVDRQRCYRCLERGHLARDCQSPVDRQQACIRCGADGHYAKSCTSEIKCAACNGPHRIGHISCARPAARCLH
>MinoAg1_pol#LINE/R1 1756-5361 gi|28569867|dbj|BAC57908.1| reverse transcriptase [Anopheles gambiae]
MLPLSGKRPSGARLSISRGSPTGVYSVRRRWSLCQKLHFRDQVCCVQRSPPHWPYLLCSSCSAMPALKILQLNVDHCREGQALALQAAREHRADILLLSDMHRPPENNGRWAYDVSKKVAVVATGSYPIQRVWGSELRGLVAAQVAGITFISVYAPPSLSAHEFERLLGAIELEAASHSRVVVAGDFNAWHEEWGSGRNGQRGIELLQTVETLGLSILNQGRKPTFIGRGFAASSVIDVSFASREIVRPDTWSVIPFSRSDHELIAFEVKQPDENPAGAQQHLSHRPQRSTRKNPAGRQHDRCDSRRWKTTQFNRQSFRVALRANNFQERAVSHIGMIEALVDACSETMQRISGLHKSPHHDMYWWTPAIKRLRDDCLAARERVQLSHDLEERSMAAAAHRTAKSLLEKAIRTSKRQQFQELIDIAETNDYGTGYRVVMSRLRGSPGPPETDRAELERIVSDLFPTHPPVSWPVSSDAPTTVPSDSRVEPQELLSIAAGMVTRKAPGLDGIPNAAVKVAIEEYTEEFCRLYQDCLSRGTFPPQWKRQRLVLLPKPGKPPGESSSYRPLCMLDALGKVLERLILNRLNRHIEQQDSPQLSDAQYGFRRGRSTISAIQRVVDAGTAAKLFRRTNTRDKRCLMVVALDIRNAFNTANWQAIADALQSKNVPSYLMKIIGAYFEGRKLLFDTSEGPVERHISAGVPQGSILGPTLWNMMYDGVFGVGLPLGAEIIGYADDLVLLVPGTTPTTAAAAAEEAVAAVKQWLLEHRLELAHSKTEMTVISSLKQPPEEVFITFGGVNVPFSRSIKYLGVRVHAHLSWVPHVKEITLKATRIVHAVNRLMPNLHGPRTSMSRLLANVADSTMRYA
>NotoAg1_gag#LINE/R1 552-1841 gi|28569887|dbj|BAC57921.1| gag-like protein [Anopheles gambiae]
MREAIRQLTNSLAEANARNERINEELTQMRILMTKQQEYTERRELIAREEMEKMRAAHERDRTALNKLLMQGAGTSSHRAAATPTTPTPQPRRMQQHQEKQRQPPQQQHQQIGPSTSAAPPQLLVSGASFDPEGDDGQGSFAEVVRHKWGRNTGKPRGYQQQQSQSHRQVVIGTQQECLQPEQQHQRQQQHTVRRHNVDKVEVIPGENQTWETVYQMVKDAIKFDPAHKDLADHVVIGRRTHAARLRIQLSCTADSTLMLQEVQQIIGNAGIARVITEMGEILITHIDPLASEEDLKEAVDRKLQASAGVTKVSMWQLSDGTKRARVRLPAKAAKQLVGQKLTVSCCISNIKEAPAINLQQQRCYRCLERGHIARECRSPVDRQKACIRCGAEGHLAKDCNAEVKCAVCSGPHRVGHSDCVRPMLRCPH
>NotoAg1_pol#LINE/R1 1829-5293 gi|28569888|dbj|BAC57922.1| reverse transcriptase [Anopheles gambiae]
MSSLRVLQLNVDHCREGQGLALQSAREHRADVLILSDMFTPPNNNGRWEFDASRKVAIVATGSYPIQRVWGSTVPGLVAAKVAGIDFISVYAPPSLSPQEYERLLEAVELEASSHSHVVIAGDFNAWHTEWGSRRNNLRGEELLQMVEVLGLSILNNGSAPTFIGRGAARPSVIDVTFATPSLVLHDTWEVLDFARSDHQLIRFETNSPALAARRVKLSQRNRSQQRSPRRDPPINRQHTPCAGRRWKTKQFRENSFLLALKDVNFAEQAVTDADIVEMMTRACDEVMQRANHLSSNPYRDLYSWSPELERLRGICLAARERLRLITDLQERSFVAADHRTAKRNLEKAIRASKRQQIDALIDTAEDNEFGGGYRVVMSTLRGSRVPQEKDPIELGRIVSDLFPNHPPVPWPYVSDVTQGEASVDDVTPRELQDIAHQMATRKAPGLDGIPNAAVKAAIGMYPDVFCRMYQDCLTRGTFPSEWKRQRLVLLSKTGKPPGESSSYRPLSMLDALGKVLEQLILNRLNKHLEDPDSPRLSDAQYGFRRGRSTFSAIQRVVDAGRRAKSFRRTNHRDKRCLMVVALDICNAFNTASWQSIADALRNKGVPSALLNIIGSYFEERKLIYNTSAGPVERHISAGVPQESILGPTLWNVMYDGVLGVELPPGAELIGYADDLVLLAPGTTPAAAAVVAEEAVSAVDRWLREHHLELAHAKTEMTVISSLQQPPEDITITVGGTEVPFSRTLKYLGVRLHYNLSWVPHVKAVIQKATQIVQAVTQLMPNHRGPKTSRCRLLAAVADSTMRYAAPVWHGALTNRECRSLLKRVQRKAAIRVARTFRTVRYETAVLPAGLVPICRAVAEDTRVHSRRGTGVSSSELRKEERQRTIEEWQTTWDADAAADNASRYVRWAHLVIPDVGAWQLRNHGEVTFHLSQVLSGHGFLREYLNKMRFTSSPACPRCPGVVEGVEHVMFECPRFAEVRSELLDGVLPETLEAHMLQSPTNWSNVCEAAKRITSKLQRCWDDECAILAAQAMLEEPANRLDPEAVRCTRNDLRNVARRTQTVRQREEQCGERPSMPSSSPRTSERRANIRARMARLRQRHRQHQQDERRGVEGGDIERGESVYPELASSPNNRQGGLTSAEKAAAVEADVASR
>R1-1_AP_gag#LINE/R1 782-2170 [Acyrthosiphon pisum]
MSDNNEMEEEAEPSTSQAGSLQRSPPSLGGSPSHKKTKAGPAPAPKARVAIKWIRHTLDLASTRKSAMAVETQRNLFEKLEELDTAVTDLVIENLQLRSQVEEARRSAEICVGAAASQFGTELRLREAAHEQTLEAVVARYAEKEAIRTHEAATKAREGEAAIAENIADRHEPDDQTFAQVTKRRQRQPRKEQPPVDRTAARSKSRNARRARLLDESRKEEHQPAFVIQPSDTAKASETSIGIWKAVMSKRIVPRCHTITTKQGKVIIKPQNKETADVLKSLARESNVLQEEALMWPRFIIRGAPTSMPEDTLQEAILDQNPELGIESGCIDRVFKPVFKTGPRDRDDTNWVVEVNPMYYQNVRKIEHLYIGFMRCRVAGYDEVTQCHLCLRYGHPAAKCNETQQTCAHCGRKGHVAGECPAAEGEPSCSNCHGKHNAREKSCSARTNHLVGRSRRTDYGKTQ
>R1-1_AP_pol#LINE/R1 2170-5184 [Acyrthosiphon pisum]
MSFPPLKIVQLNMGRAAAVSDQLLSYCQDTGVDIALVQEPYTNRGRLTGFEVAPIRCYLSMGTRRRGGPRHIDHGAAIIVLNPNLVVASRDSGRVKNFVSIDLDCGAEGQWTMISGYFKYRVPTEIHVSALESLTEQNGNSLLIGLDANAFSTRWFSRINDRRGEVLSQFIDAQRLQVENKRSVHTTFRGPRGKTNIDVTLSSGQISTRVRDWTVLPGITSSDHQLIRYEVDAQPRRFVQPPPRYNVNRALVEQFKMEFHLRSEGRQCHQDIDSMATAIVEDITAAADLYIPKSSHRRKVKPPWWTDELLAARRNLRRAARRVDDTVTRAEYNVLRNSYTSLLRKCKIGSWRRFCTTEGKLPWGKLYRWMRQGVKPQSVPVLMMRPDGTQCQTLDESLTSLLNTLIPNDPDQEDPAPVESNEENWTETTEVELRTFAWSVAPNRAPGADCISGKMVRLLWQNLHPRLRSLANSCMRRAKFPKDWKAAVVVPILKGVGRDIRNPKSYRPVSLLPVLGKIVEKIINVSLRTQIEPRLTGKQYGFTPGRSTLDAIRNLLTWSRLNEEKYVLTVFLDITGAFDNLKWSALLEDLATLGVSEHTRSLIMDYLSGRTATLKIGGVSKTVRVTKGCPQGSILGPILWNVTMEALLRAEQPQYVNMQAYADDVAISVAGPTRASIIRRTEQALQPVLQWARSRGLSFSAQKSTAMITKGSLVHGFTLAFGDERIVTVPHTKYLGVTIDSDWKWDVHIERLTEDHDDIFSRLRGTMGAGWGIKRENLMTLYRGVFLPRVAYGVSLWVHAVGSEGNKKRLHRLQRRVLLGLTCAYRTTSTDALQVLAGVLPLDLELKWIAIKEDAKGLPEGVRRGTIHLAYEDIMDEWQSRWSNSHKGRWTHQCFPDVRARQTSPLAMGHEVAQFLTGHGNFRAKLAYFGRQPSPVCLCGAEDEFVDHVIFRCERHSAHRAHLELEVHRAGHLWPCEMETLVSSKRLYTALVRFAKTAAYYEQLD
>R1-1_BM_pol#LINE/R1 39-2918 [Bombyx mori]
MTGVLRFLQGNLNHCARAQDLLFQSMAEGLTHLAVVAEPYRVPSSPDWAADLEGRVAIIRRCCVGAPPRFXVVERGRGFVAVLWAEVFVLGVYFSPNRTLAEXXVFXSELSRVVGRSHSRRXLVLGDLNAKSLXWGSSRTCPRGRAVEERLVGSGLLVLNRGAELACVRRLGGSVVDVTFATPDVANRVRGWAVMVGEETLSDHRYIRFGVAAPPAESIRGSSLLCGGGAGGPRWAQKRLNVERLCEAAVVQAWRLDSLGEPADVCEGVEHLREAMSRVCDAAMPRIRALAPKRRVHWWTEEIASQRRLCDVSRRAYQRYRRRRTRRDPDEEDRLYEVYRTAIRALRLAIGEAKEAAWNDLLASLDRDPWGRPYRLARNALRRWAPPATSTLPPETLQRVVGGLFPDFTGTAFVPPVMTTARVADGGEPEDVSQAEFDSAVQRMRAKRTAPGPDGISSRAWALALTGDGLGPALRGLFSXCLREGRFPEPWKTGRLVLIPKEGRPRDEPSGYRPIVVLDEAGKLLERVVASRLVQHLESVGPDLAPNQYGFRRGRSTVDAVLRVRHLSDRACSEGGVLLAVSIDIANAFNTIPWSTIVESLRFHRVPPSLRTLIEDYLSGRNVVFPERRGWGRKAVSCGVPQGSVLGPLLWDIGFDWVLRGASLRGVDVVCYADDTLVTARGADYRAAAILATAAVSTVVSRIRRLGLEVALRKSEAVCFHPVRRGPPPGANLIVGGVSIAVQPKLKYLGLVLDSRWRFDHHFGELVPKLLGMAGALARLLPNVGGCSAGVRRLYLGVVRSMALYGAPVWSPALSARNAALLLRAQRALAVRVIRGYRTISREVACALAGSLPWDLEAEVAAAVYRRRTQSLSRGRTPGPSAVGRWRRAARHLAYESVVVLRGKCFARLFQGVVSREKLGEVKDLGSSLLPFFLSGGAGVRHXPVRYPPRPGIRKWIPQR
>R1-1_DGr_gag#LINE/R1 253-1644 R1-2_DGr_gag near-identical. [Drosophila grimshawi]
MPPRKKRSAELEAGGAQMVSSDDDTSQSSDAASLAEVRRRGVLSKQQLRKAASETAVDSAGKNVERRRAEGNLVVTLRVPREKGEVCNSGTPSVSAGVPAVEEPIAACSASNALPLRQRGTPIEKMKAISKELVECALAECMTGSLVGSMLGYATQYEELLFSLIAENERLKGRLEAVRFNATNEHAGHVTAGQTRVPPAAVHRGGPMSTMSSAPEMPPPVETWSLVVRSKTAGKTAKEVVDKVVKEVGPTLGVRVHEVKPLRDGGAIIRTPSVAERRKIAGNAKFSEVGLEVSVKERLGPKVVVQGVHAVISPDEFMAELYELNLKDKMSKEAFTKGVRIASKPWSQEGSAAVNVVLEGAGLAMQTLLDVGRCYVKWFSFRVRNFDPVVGCYRCLGFDHKVAECRLKQDVCRRCGQMGHRVAQCSNALNCRNCAFKGRPSEHLMMSPACPVYSAIVARASARH
>R1-1_DGr_pol#LINE/R1 1649-4714 R1-2_DGr_pol near-identical. [Drosophila grimshawi]
MSSRLLQLNCQKSYAVMCDVGGMIVRRGSVVALLQEPYVTNGCVRGLPAGMRVFPDSRANSAVVVNDVSIECTVVNSTDWGVCVSLSGNFGRLFVASVYCKFGDPLEPYIAYMDEVLLLASSVPFILGIDANAPSPLWFSKISRSARYLNRSRGEVLAEWAVSQDVRVVNEPSEWYTFAGPMGQSDIDVTLANVAATSVFGFQWSVLGGHGVSDHNPIEIVITHTSTTRESDGGNRWRTCGANWPLHGIFVSEAATQVPLSTFSAMNVDEQVVCVNRWVTCANDRLFERHRKVNLKRVKWWSHELSVKRRSVRSLRKRFQRARSANAENAGQLRLAYSQCMNEYKQMLVRVKEDEWRSFLERNKDDPWGRAYKVVRGRRREADVSGLRVGDVQLTAWSDCMNVLLNEFFPRADHQNLPPSVVGDVDPLLDSELEVAFSMLKSRKSPGMDGFTGEMCKSVWKSIPDYMNVMYGKCMNEGYFPNEWKCARVIVLLKSPDRVRSNPRSFRGISLLPVLGKVLERVMVERLQERVSSQMSDRQFGFRKGRCVEDAWRFVSDSVESSNSRHILGIFVDFKGAFDHLSWPSVLERLSECGCRELAIWESYFSGRRACAVGRHESVSLNVVRGCPQGSICGPFIWNLMMDTLLWQLERVCKCCAYADDLLILVEGQSRADVEASAATYLRVVYEWGLRVGVSLAMDKTVTMLLKGRLSRSRPPLVRLNGVSLRHVSEVKYLGIVFGERMCFTPHIAYVKGRLLSLVGQVRRILRSDWGLSRSAARTVYDGLFVACATYGSSVWCKAVLTVVGRKNVLACQRVMLLGCLPVCRTVSTEAMQVLLGVAPLDLEIRRRSLSYRIKRRLPLLQNEWLADRDVESLGLSECKKLLNECVLSDWQVRWDTSENGRVTHRFIREVTFAVDRPDFRLHLSFGFLLTGHGSLNAFLHSRRLCDSPECPCGWVGETWEHVLCECPLYADLRDLSVLGITRGISGYDVSQVLSTCEGVRRMSEFARAAFARRRLIRGEVG
>R1-1_DYa_gag#LINE/R1 636-1721 [Drosophila yakuba]
MDSPAGGSAPKGDDPFRRSSRMSRSPTRGVEITVQGAGTHAPAVEKGDQTGPHTTAAITSNRTAVVASLAPAATITTSQKKISDLISVPTQNIASKSPPGSPIRPLDLSALQHENLRSILDMMDMCAFETQRHVTKETKGAITDLAALNTRAIQLQQSTVNVAAPAKDIATQTEAEAQKKRPASSALKSVTEKFPVLPPPNKAPKAAATKAKVPNPASFAGVAKNASSTVEWTKVKPKRIRKKPEAFILKKTGEASYADILLKMRADPNLSEFGNQVRRIRRTQQGELLLEVKGKASENVPLYRGAIEESLKEMAAVRTGTQRMALTCSGMDEATTAEELHRCMVSQFECCPRRCEGPAQNA
>R1-1_DYa_pol#LINE/R1 2072-5035 [Drosophila yakuba]
MMLDAIKIIQLNVNHCAAAQSLLAHTAAERSVDIMLLSEPYSPGIGNPSMILDESGKAAIKCCSPLHVQERAYLPMRGIAYARVKGVHIYSCYAPPSDSTDQFEEMLDTLVNHARGRCPTIIAGDFNAWAVEWGSRVSNPRGRAVIDAMMMLDLTLLNDGRVPTFNNDRGTSFIDVTFVSRGLVANSSWTVLDVVTLSDHALITFSVSSTGTTRSQPRRSLGQAWDTRKFDKDMLQYQIDTLLIPTGDAETMAAELMKILVAMCDATMPRKKKVQRKPPVYWWSPVLQQMRSECLKARRRAQRARGSPHQTELLEAFKAKRTAFKHGISAAKAQAYKNLLDSVDDDTWGLAYKLVSNKLRKRDVPPSDPDVLANIVAELFPMQSTTWQPLAAAPVSDFPSITAQEVVEAARRIKANKAPGLDGIPGVVVKAVALSRPDIFRDTFQQCLLDGVFPARWKSQKLVLLPKGKGPAQAAVSYRPLCLLDIVGKLFERILYARIEAVTESTXGLSSHQYGFRKGKSTLNALTAVRNIAKNALEGDRWLGGKKEYCAIVTLDVKNAFNTARWPLILDAMYTMGIPEYLRIAVGSYFRNRILWYDTENGPKSYRVSAGVPQGSVLGPILWNIMYDGILAIRKPTGAELHCFADDVAITAVAKTIMETQEKCNATIRAAIDWFEKAGLAIAAHKTEAVLLSSRKKVESMQVSVSGTQVSSAESLKYLGVLIDHRLSFKDHAKYASRKAAITSAALSRLMPNVGGPRDPARRLLVTVAKATLLYAAPIWSDATKKGSYLNGARMVIRSMALRLIRGFRTISQDAALVLAGMPPADLEIKALVLISNGATRDEAYERVVGEWQTRWQMSQRGRWTYQLIPEIDAWTQCSHKTLDYHMSQFLTDHGCFRAYLHRFRHVDSAQCLYCIDAVETAEHVLMHCSRFSAEREQLKALAGDPLSPNGLITAMTANVNKWELGHRIIINMMKRVRADETANRAGN
>R1-1_NVi_gag#LINE/R1 894-2309  [Nasonia vitripennis]
MCWGHVSCLHRRGDPGGRTHTRTKFDFSMDEATERNNLRMEGCDVPADGDAVSGGGSKNLVGSLATINDIAAQNREGTGDIIGGSPQNWXAAERKLEDQLLIIRSNLVKMKAKTNVQKNVSRVITDGMCEIYEAVEVGMHELQRMKQLRQTLTEVQRTDTEETPRLKRKRDRQTPTPEPGTSDKQELXAKDTWATVTNEETKRPRKRRRMLIKXDETKEPKARKTDRSNLKPRRSAILIKPAEGKTYADVLLSXRQXVNLTDSKVDVRAIRKTKDGSVLLQLDKEQERQVFQQTIQNVLGQTATVKDVTSKVTLEFMDLDCVTTAQDVADAINRETGTTTDRNVHVFDANNRGQALAVCEFDAKEATDLLKKGRIKIGWINCRIRPRLRVPRCYRCLGYGHVRVDCKGPDRRDCCWKCGRKGHVGKACTSAPSCFLCAGRANQDLAHVPGTASCAVFKAALTEYRTKQTKWT
>R1-1_NVi_pol#LINE/R1 2303-5331 via tfasty with LINER1-3_NVi_pol, 2 frameshifts. [Nasonia vitripennis]
MDLTILQCNLNGSSVAHSLLPQIAAETDADVLVISEQYRNLSEPSWIASSSNTAAVWVRGVNAARIIDSGAGEDYAWVRVGSVTIVSVYLSPNNSAQCARIRRKLEALEDVVRNLTGDVIVAGDFNARAIEWGMPTTNRRGRLILQMAARLELEVINDGNVTTYRRPGFGNSIPDITLATDRMLTRLRGWRVIEDYTASDHQYIVFNLTNDAALRQRQSMRTTRWDIGRINRDEIKRQLQNVAIPSADLSQGRTDRAAAERSANDLEKYLQRICEAAMPRKRYRQDRRQTYWWTQEIAEIRKECLRLRRLAGRERDSDDKRGISREYKLARRLLRQTINSTKRRCWRRLEDEVDSDPWGEGYKIVTRKLGAWNPPETKDADTMERIVHDLFPTHQDRTDDTDMDTAVECPLFTVAELESAAAKLKPRKAPGPDGVPGELLQIIVAEQPDALLRLYNGCLTAGVFGGPWKGARLVLIAKGKGDPASSSSYRPLSLLNTPGKLYELLLRPRLLQAVEAAGDLSDRQHGFRRGHSTIGAITHVIQIVDKTNDICHGARPLVLLATLDVRNAFNSARWADILEALETTFRVPAYLVRVVKDYLRDRYLTYETSDGTRRRKLTAGVAQGSILGPDFWNILYDGLLRLDMPDDTCLIAYADDVAAVITARNTHLAQLKLNQVMRRVSTWMTDHGLQLALQKTELLLLTRKRIDTIIPMNVGTEHTITRNEVKYLGVTLDTKLTFWAHIRNATAKAAETTKALSRLMANTRGPRPSIRRLLMSVTHSIMLYGAEVWADALQVKKRAKAMTSVQRTGALRIACAYRTVSENAIFVIAGVIPIDLLARERKRLYVRSSNVGRADAATEERTRTMEEWQTRWTTNGQGRWTHRLIPEVGPWKDRKHGEVDFYLTQFLSGHGYFRRYLYRMNRVTTPECTYCGQAWDDAEHTFFRCNRWTEQRQRLETLLGTTITPDNVTKLMITSEDAWRSIATYVGSILRGKKEDGCLDNXARARVGE
>R1-2B_AP_gag#LINE/R1 722-1972  [Acyrthosiphon pisum]
MKKLRCSPDPVPVAREAIKWIRYTIESSATKKTNLPAEIQRAMFDKLKALDTAVHDMVISNLQLSSQLEEARRSAEICVGAAAAQFGTELRLRETAHEQTLEAVVARYAEREALRQQELEARGPHAERVVTQEAPVETFAQVARTARPPTTTASRKPDRSVSRATKRNKALKEAKQVEHIPAFVIKSCGGKDPKEVRNVVWKKVASQQVQPNCHSTIAKDGIIKPLNRETADVLKSLAKTSTLIVEDSPRWPRVIFRGVQADARPDELQSAIISQNGHLNINEDTTEEILRPIFKQGKRDMDTTNWVMEVNPKYYDRFEDATVYIGFMRCKAAAFEEVTQCHICLKYGHPASKCQGTEPKCTHCSRAGHKAVECPAAEGDPICANCRGKHSARDKTCSVRTAYLLGIAKRTDYGVSQ
>R1-2B_AP_pol#LINE/R1 1972-4983  [Acyrthosiphon pisum]
MSLRPLKIVQLNMERAAAVNDQLLAYCQETGVDIAMVQEPYTNRGKLTGFETAPIRCYLSKGTRRRGAPNYLDHGAAIIVFNANLVIVARCVGTIENFVSIDLDCDLEGIVTLISGYFKYRVPTAVHVEALGPLHQDTAQEVLITLDANAFSTRWHSRINDRRGETLVTWLDDQNLRIANKRSPHMTFDGPRGRTNIDVTVCSDNIYGKLRDWTVIPDATASDHNLISFTMTLRAREFIHRITRFNLLRRNHITFVQEYEARATRRAATDRDLDTMATQAIEDITYAAERHASRSNRRRKTLPPWWSPELTDKRKEVRAAARHKATGGRQLYNEKRNEYTMLLRRNKISSWRNFCTLEGVQPWGKLYRWMKGGHKSLTAIGLMRLPDGSVSNSIDESVSILLNALIPNDPNTQVDARPVPEEGDMDPVTEEELKVHAWGLSPNRAPGMDSITARMVRVLWPVLAPRLVNIVNECLKTGQFPNNWKAAQVIPILKGQDRDIALPMSYRPVSLLPVMGKIAEKVINSRLTEQIRPRLTGKQYGFTQGRSTSDAIQRLLTWSNLCLEQYVITIFLDISGAFDNLTWPALQRDLGSLGASKHMRHLIADYLRGRTATMTIGGVAKTVRVTKGCPQGSILGPVLWNVTVEALLRTDFPGHVNIQAYADDIAIYVSGPNRRTLIERSTTALLPVLAWARDRGLTFSAQKSVAMITKGALVPGFTLTFGDERIVSVDNVRYLGIRLDQKKSFTPHFEALKNSSETLFSRLRGTIGAGWGLKRENILILYRGVFLPKIAYGAQFWAHKLKTLQTIKKFGSIQRRALLGMTSAYSTTSTDALQVLAGVPPLDIEIKWMVNKAVVALLPAHLRHDTMTAMRETLLDEWQIRWTNSLKGRWTFRFFPDIRARLLLPLSLGHEVVQFLSGHGNFRAKLATFNLQPVSMCACGMGDEYAEHVLFNCFLDADHRAVLELAVHRSGHLWPCNPATLVSTAKLYAALVKFSKVAAYMERP
>R1-2_AP_gag#LINE/R1 762-2123  [Acyrthosiphon pisum]
MSTHSLEDITQEPQSPLPGTSQQQMRSPPSPGDSPQTKKPKGLPTPGPVARVTIKWIRHTLDLASTRKTAMAVDVTRNLFSKLDELDTAVIDLVIENLQLRSQVEEARRSAEICVGAAAAQFGTELRLREAAHEQTLEAVVTRYAEKEAIRSLETAPVRQNVTEEQMCTEEPPTFAVVTRRKQSRTVDRIADRSRSRATTRNKRIRETRQAEHLPSFILNESPGKSNTEVRDLIWNQVVAKNSRPKCHTITTKTGKTILKPSDKETVDALKYISKVSTLLKEDSLRWPRVIIRGVSSDMKFDHQIQQCIIAQNPELGFDDNEDEMVIKPVFKSGPRDRSTTNWIVEVNPKHFEKFENTTIFLGFMRCRVSAYEEVTQCHLCLRYGHPASKCLEKDCVCAHCGRKAHKAADCPAAEADPVCINCRGKHSARDKTCSARTAFLVNQVRRTDYGKSQ
>R1-2_AP_pol#LINE/R1 2060-5228 via tfasty with R1_DM_pol, 1 frameshift and 1 stopcodon. [Acyrthosiphon pisum]
MLCKDGFLGQPGQEDRLWEVAMSVHPPLKIVQLNMGRAAAVNDQLLAYCQESGVDIAMVQEPYTNRGKLTGFETAPIRGYLSKGTRRRGAPNYVDYGAAIIVFNANLVIATRSVGTTENFVSIDLDCDADGTVTLISGYFKYRVPTEVHVDVRGPLFQTAAQEVLITLDANAFSTRWFSRINDRRGKALVTWLDDHNLNIANKRSPHNTFDGPRGRTNIDITVCSDYLLGKIREWAVIPAATSSDHNLISFTVDLSLREFIHRSIRLNLLRRNYNTFVQEYEARTTQRTEIALDLDTMATQVFEDVTYSANxHATRSTRKRKVTPPWWSPELTNKRKEVRAAARHKADGGRQHYNSIRNEYTMLLRRNKVTSWKNFCTLEGVQPWGKLYRWMKGGNKPLTAIGLMRLPDRRIGVHAAKVLIPNDPTTQEDARPALAEGDLDPVTEEELKVHAWGLSPNRAPGTDSITARMIRVLWPAIAPRLVTIVNESLRTGRFPNSWKMAQVIPILKEQDRDTALPKSFRPVSLLPVMGKITEKAINSRLSEQIRPRLSGKQFGFTPGRSTLDAIQSLLTWINLSAEQHVITIFLDISGAFDNLLWPALQRDLCSLGASLHMRHLIADYLRGRTATMTIGGVSKSVRVMKGCPQGSILGPVLWNVTVEPLLQTDFPDYVNIQAYADDIAISVLGPNRRTLIERAEATLLPALAWAHERGLTFSAQKSVAMITKGTLVPGFTLSFGDERIVSADNGRYLGIRLDQKKSFMPHFEALKSSSETLFSRLRGTIGAGWGLRRENIMILYRGVFVPKIAYGSQFWVHKIKTRQMIRNFGSIQRRALLGMTSAYNTNSTDALQVIAGVPPLDIEIQWLVQKAEVALLPAQLRNETLKAKREALLDEWQTRWSNSIKGRWTFRFFPDVRERLLLPLSLGHEVVQFMSGHGNSRAKLASFNLQPDSRCACGMGEEFVDHVLYNCTLHAEHRARGTQSRSPMAVRSGHVGFHIQALYGASKILQNGCLHGMPMRWKNTRTDKTLWAPECQTPHVFWTSVKARDGRSGSHVGPS
>R1-2_DM_gag#LINE/R1 18-719 [Drosophila fruit fly genus]
MCDDPSIPGKQSAERVRKEVAPALGVRVHEVRELKCGGAVIRTPSVSEMKKVVANKKLAEVGLKVQPKKSQRPKVQVFDVDSGIQPDGGIVRQQFKEEFSPAAFMKEMHLNTKPWSVTDGERANLTLEVDEKALNVLEQTGRVYIKWFSYRCRSLVHTYACHRCLGFDHKVSQCRVKETICPQCGQAGHTAPRCTNPVDCRNCRFKGHPSRHSMLSFTCPIYGAVLARVNARH
>R1-2_DM_pol#LINE/R1 719-3216 [Drosophila fruit fly genus]
MFSFLQANCGRGRAPTIELXVRLRDSGHLFALVQEPYVDLAGRITGVPSGMRVFSDRRGKAAVYVDSTDSICMPIEPLVTEFGVCVSVTGSFGSIFLCSVYCQFNTGLEQYLGYLDAVLLLASRTPVILGLDANAVSPMWFSKLPERAQGSANYLRGELLSDWIQGCRAGVLNMPCDAFTFETPYARSDIDVTLTNDAASTCATYDWRVDEWDLSDHNIINVVVTRDPPNTVESFAPVPSWNFSAARWRPFEDEVTRLASELPDEFADTPLDDQVSAVRSLVHSVCDQVLGRRRPKTARKIVWWTAELSSKRQEVRRLRRRLQTARARASHDAEQLVSQLREISDQYKELILKYKEDNWRRLVGENKDDPWGQVFRICRGRKRTTELGCLRXGGRQYVTWHDCAGVLLRTFFPFSSFRHPLSFLKRFHHRLSSEVDACVARLKSRRSPGMDGITAVIFKAVWRAIPEHITAFYSRCIRSGYLPSKWKRTIAVALLKGSDKDRSDPASYRGICPLLFVFGKVLEGIMVNRLKDVLPDGSRWQFGFREGRCVEDAWRHVVSTVAANQAQYMLGIFVDFKGAFDHVEWDVVMRRLIDSGCREASLWRSFFSGRSASLVSRYGEVTVPVTRGCPQGSISGPFIWNLMMDSLLQRLEPLRGFSALADDLLLFVEGTRIVLESKGEQLMSVVGAWEVGVAVLTSKTALLLGHFAQSRHTTVRFAGASLPYVDKYRYLGVTVVERLNVLPHIKSLRDRLTGVVQALARVLCVDWGLSPRARRTIYAGLMVPCALFGASVWYDGPSSAMRHLVSCQRRILLGCLPVCRTVSTVAMQVLXG
>R1-3_AP_gag#LINE/R1 787-2142  [Acyrthosiphon pisum]
MEDMEDTQEPGSPVQGTSHQPPRSPMSSGESPEQKKKKGSPDPVPLARESIGWIRYSLETAATKKSNVPVETQRSMFDKLKTLDSAIHDMVIMNLQLASQLEESRRSAEICVGAAAAQFGTKLWLREVAHEQTLEAVVARYAEREALRLHELEKRGPPPEQVAMQEVPAETFAQVTRAARPAKTTAGRKPDRSVSRAANRNKALKEAKLTEHIPAYIIKSCGGKDPKEVRSVVWSKVASQNIQPKCHSIIAKDGRVIIKPMNRETADILKSLSKSSSLIVEDSPRWPRVMFRGVQTDIRSEDLQSSIVSQNAHLNIDEDTTDEILRPIFKQGKRDMDTTNWVMEVNPRYYDRFEDAIVYIGFMRCKVAAYEEVTQCHVCLKYGHPASKCQEKEPRSTHCSRAGHKAADCPAAEGDPTCANCRGKHNARDKTCSARTAFLLGRAKRTDYGVTQ
>R1-3_AP_pol#LINE/R1 2142-5162  [Acyrthosiphon pisum]
MSAQPLTIVQLNMGRASAVSDLLLEFCQNNEVDVALVQEPYTNRGRLVGFEVAPFRCYLSKPTRRRGGLLHLDHGAAIIVFNPNLVVAARDSDLIENFVSIDIDCAADGIITMISGYFKFRVPTAIHVEVLDRIFQSTTNEVLIALDANAFSTRWFSRINDRRGETLTTWLDEHDLHTVNTRSPFTTFNGPRGRTNIDVTIFGQSLLGKIGDWKVVPDVTTSDHQVLMYTLHLQRRQFIHRTTRFNLDQRQRDAFVQEFARATTQRDDEHENLDSKAQHLHEDITVAAELFAPRRNPRKKVVPPWWSPELTRLRKEVRNASRRCRQTGDRVVYNTRRNEYTQLLRSSKVASWRRFCTLEGKNPWGKLYRWMKGNKATVAIGLIKRADGSLCQDIDESVTTLLNVLIPNDPTRPVGVRTEAVTGNLNPIACPELKALAWTIAPNRAPGTDGITGSMVRALWLTLAPRLLSITNECLARARFPESWKVAQVVPILKGKDRDVMQPKSYRPVSLLPVLGKVIEKVINLRLQEQITPSLTGRQYGFTRDRSTFDAFQNLLTWSDLRQERHVLTIFHDITGAFDNLEWTALQRDLQSLGASNHIRLLIADYLSGRTAKITIGGVEKSVRLTKGCPQGSILGPVLWNVTMEALLRVVFPEHVNIQAYADDVAMSVAAPNRRILIERAEEALIPVLAWAEERGLQFSAQKSVAMITKGDMVPGFTLAFGGERIVTVDCVKYLGIRLDQKRQYTEHLDEMKKASETIFTKMRGTLGSGWGMKRENIAILYRGVFLPKITYGARFWAHTTTSNRAIKLLGSIQRRALIGMTGAYCTMSTDALQILAGVPPLDLEIHWMVLKAEAATIPNHLRPQTLANGREELLEAWQARWAATQKGRWTYRIFPEVRNRLKLPLALGHEVTQFLSRHGNFRAKLAGFDLQPTPLCVCGDGEEDVGHVLFDCALHIEHRAHLELAVHRAGYLWPCDPAVLVSTKRIYSALVRFAKTAAYLERTVRA
>R1-3_BM_gag#LINE/R1 1-2267 via tfasty with SART1_gag, 1 frameshift and 3 stopcodons. [Bombyx mori]
GGGTSCSGKESEKDGEKRKRSTRDERETVQNEDRRRESSVCSEDSMVVSSCCSSPKRTTRKRAKGSKNASSDSSTEXEASRSGSLVSRTRPSKRGRGRPPTTGQYVGLAAAKQAHLKAQREELELRAEQEVVESVHNLREKRRAVHLISGNITADPATRLQETAQMALTIAAKARNPKGTYIKALKEMATTIKEATEDLASRSANEETLRLQALSERQEAEILQLRKEVEDVRAEMVRLAQTTAQPTPAPTLPNEDDERRLQIIMRAVGSMLDARLAGLEARLLPEPRLRPPLAADARRRSRESEIDPDTAGLVSEATPPYAALPQLETNKKVKPKKQKGNNKKTTPSAPPEPPAPPEPRAFPPAPAALTVSWATVARRGARPRREKEPAPTTNAEGQRDRNPAPLKPKKKGRKKRLRAPRSQAVILRLHPEAIEKGLSYREVLAEARASIDAGALGIPIEKVRSAITGAKILIVSGEDQIAKADLLAEKLKEVLSSKRVTVTRPMVTAAIRISGLDDSLTEEGRYAPSLRASAGDIVRGGEACALIGEFAPSVAVKAGTxSLYQARGSGGVDRQGHAGRFSAFQVLARNPIAAVKTIxLHRDRYSDEAAHRVERPCRGISxSTCWKMARSRLQCFRCHSPLQPPAARRCHALGHVGARCPSSVDRSHDCYRCGQTGHVASGCTLAPRCAVCASAGKPADHTSGGKACARPPRKPRREDVAAPAAAPVAADRSQLGETTTPMDVQPPSGTRKTGAL
>R1-4_AP_gag#LINE/R1 618-1997  [Acyrthosiphon pisum]
MSTHSTMDEDEGLQDAQQGTSQPQRTQRSPNTPGSSPQHKKKRGSADPVPIAREAIKWIRYTLEIASTKKTNITAETQRSLFAKLEALEGSIHDMVIANLTLQSQLEESHRGAEICMSACAAQFGTELRLREAAHEQTLEAVVARYAAREVAREEDAARVGNTAQQPVEHEEHTFAQVTEHGRRRNRGDRPPAVRAAERSKSRTAKRTKLLAESRNEEHRPAFIIQSIDGAKASDTSTGIWKKVMSKKVMPRCQTITTKQGKVIIKPLNKETADVLKSLSLESDELQEEPLMWPRFIVRGVPSCMPESTIQEAILDQNPELGIEPGCIDRVFKPVFKRGPRDREDTNWVMEVNPPYYENVRKVEHLYIGFTRCRIAEYDEVTQCHVCLRHGHPAAKCNEKQPTCAHCGRKGHLADVCPAAEAEPSCANCHGKHNARERSCSARTNHLVGRARRTNYGKTQ
>R1-4_AP_pol#LINE/R1 1997-4232  [Acyrthosiphon pisum]
MSISSLSVVQLNMGRASSVSDQLLEYCQTHNIDIAMVQEPYTNRGRLTGFEVAPIRSFLSMGTRRRGRPEYLDYGAAIIVFNPDLIVVPREAGTVENFVSVDLDCGEEGNVTLISGYFKYRVPTPVHVVALDGLIRDANEKTIIALDANAFSKRWFSRINDARGEALVSCIDEHGLVVMNTRCQHTTFNGPRGRTNIDVTLADQVLQRRVANWSIDPGATSSDHQLIKFTVAMRTRTFEHRETRFILRKAAYQQFRLAYEELAARRQHREPNLDHNASSISEDVTAAAMAHAPRARRRKRVKPPWWTNELHEARKAVRAAARAMTTTDGRQLFNQKRNVYTSILRRNKINSWRAFCTEEGKQPWGKLYRWLRNGSKRYCSIGLMTRPDGTRCDTIDESVELLLNSLIPNDPGQQRPAPAEETLCDIHPISSSTLRDFAWAISPNRAPGNDGITGRMLRVLWPCLESRFLSLTNACMEKAHFPGSWKSAIVVPISKGEDRDPGLPKSYRPVSLLPTMGKILEKVINHRLQEQIQPNYTGKQYGFTSGKSTMDAVGNLLLWNTQRAEKYAMTVFLDISGAFDNLAWPALQSDLESIGATPHMRRWIADYLSGRTATMTVGGITKDVRVTKGCPQGSILGPILWNVTMEALLRTTYPEHVAIQAYADDIAISIAAQTRVSLIQRAEEALRPALEWAHHRGLTFSAQKSQAMITKGSLAAGFTIAFGTDRIATVDCIKYLGIWLDEERSF
>R1-5_BM_gag#LINE/R1 3-1730  [Bombyx mori]
YVRALKCVAAAVEXHLEAFLQRTSTEEVAGLRSQLERLQAPRKRGAXGGERAGAGGXGRYACGPRRXRGTPGQLGXSATPAPTQETAEKDKEIEELKRRLAILEARASKVERARPPLAHERPAPAPSSRGTAAAPAPAKAAATKVGAAPATRASANLAAPVKSAGXRAXAQPARPPAAAPAPPQPAKAGPGRSRAKQKRGVNAAEPAQTPQPRPLPPAPSNMDEAWTTVVRRGRRKAQAAPDPRPVPAAAAPQAMGRAAAGGKRKGRKARKPRAPRSAAVVLELLPAAKEKGLTYGEVMARARGSVDVDAIGVEGGXRVRHTANGARLLECPGADXGAAADRLAARLREILPDPEVVRIDRPVKMAEVKVTGLDECATKEEVAAAIASQGNCALAQVKVGELRSSYSGAFTAWARCPVQAATLLATPPQGRPADSPGRLRVGWVIAHVQLQEARPWRCLRCFGTGHGLARCPSAVDRSGLCFRCGQPGHKAASCTAAAPHCVLCDAAKRRADHRAGGPACRSAPSSTKRRRGGKKKKKKAEEEPAAREAAGRSVPAAAVEPQGGTEDEGAMDVTPQ
>R1A_DAn_gag#LINE/R1 612-2087 [Drosophila ananassae]
MSAMSAMSALSESELSASSRASSRASSAIGAARGRRRGRKSKATSLSAPTQAKLLAATGADRPEPVGVLEELALSSLETPVMPATSAVDASAATFAAPAVVAGVVADAAEAAAAVAAGAPAAVPERSAVSMRSLDCIIKNGADGVMEEAASIKETFVSLVVESLMNPQQATALMRCISRYDGIVQALMVRNAVLEESSKLRAAMPLPPPPVQMPSVPQAVVSRPPVGYASAYPSLPAPSAAPVPAPRKPRDTWSAVVMSKDPKLSGKEVAEKVRREIAPSLGVRLHEVRGLARGGAIIRTPSSGEIKRVVASKKFGEIGLEVKPNAVQRPKLVVQDVATQIAPEEFMAELYANNLREHIPEAEFRKAVHLDTKPWTVADGATVSVTLECEPKVLDLLEGGRIYIKWFSYRCRALVRTYACHRCVGFNHKVAECKQKDNVCRQCGQSGHSARSCTNPVDCRNCRFYGHPSGHSMLSPSCPVYAAVLARVNSRH
>R1A_DAn_pol#LINE/R1 2090-5155 [Drosophila ananassae]
MFRFIQANCGRGRAATLELAVRLRESGCLFALLQEPYVGSGTSDVLPEGMRIYTDRRQKAAILVDHQDVICMPMEPLTTDYGVCVSVKGSFGSIFLCSAYCQFDTELEPYLRYMDAVLLQASRTPAILGLDANAASPMWFSKLPRNPEGHANYNRGELLSEWMLENGAVALNQPSPVFTFDTYRARSDIDVTIANDAASMWATFEWRVDEWELSDHNIITVVVTPTTTRAVESLAPVPSWNISNARWQLFEQEMVSRAADIPEDFSQSPLDQQVSTLRCMVHDACDLAIGRRTPRSPRRRKPGWWTANLNTAKREVRRLRRRLQNARRRGDDDAAELIVVALRQASDDYKKLILRAKEDSWRRFVGENAHDPWGRVYKICRGRRKCTEIGCLRVDGELVTDWGDCARVLLRNFFPVAESDAPIAGAEEVPPALEEVEVDACVARLKSRRSPGMDGINGTICKAVWRAIPQYLTALYSRCIQSGYFPREWKCPRVVALLKGPDKDRCEPSSYRGICLLPVFGKVLEAIMVDRVREVLPEGCRWQFGFRQGRCVDDAWRHVKSSVAASPARYVLGIFVDFKGAFDNVEWSAALRRLADLGCRELSLWQSFFSDRRAVIRSSSGTVSVPVTRGCPQGSISGPFIWDLLMDVLLRRLQPYCAFSAYADDLLLLVEGNSRAVLEDKGAQLMSIVEAWGTEIGVTISTSKTVIMLLKGALARTPLVRSAGANLPYVRSCRYLGITVSERMNFFMHIASLRQRMTGVVQALARVLRVDWGFSPRARRTIYAGLMVPCALFGASVWYVVTTRQVVARRRLLACQRLILLGCLPVCRTVSTLALQVLAGAPPLDLAAMKIAVKYKLKRGYPLEGDDWLYGEDLSGLSWTQRVSRVDECLLSDWQSRWDDGDSPGRVTHKFIPDAGFVYRNPDFGFSMRAGFLLTGHGSFNAFLHRRALSDTAACSCGDPNEDWEHILCACPLYADLRDLDGLGLQHVGGTWTFGRILESGDRTRRLTEFAEEVFRRRRGLQ
>R1A_DS_pol#LINE/R1 1-2232 [Dugesiella]
YAFAQVEIDAVCKSLPRKKAPGEDRFTYEIVRGLHEALPRLLGALFNRCLSLKVFPNEWKKGELALLAKIGKDVNRPNAYRPICLLPALGKIYEKLIVNRLWHFVTINKALSDNQFGFVPYRSTTMAIDKLLGTFRHFEDERCVTLLVSLDISNAFNSVWYPSVLRYLRQNRFPGNLIDIIVDYFRDRTISVRFGSTRVTRNVVRGCPQGSVLGPLLWNMVIDPVLRERLPGGAILQAYADDLVLAVPGKSRVDLLGKAVDCLSTVREWAGRSKLALDTAKSKAMVLNSKYRSLDLSHHLVGGIKVEKELKYLGLIIDSDLNFQSHFKAVSARVNRFVHNLRSMTVRANGICPDAIRTYYHQVLRQWMSYGAAIWFPGHIKKFYDRFNAIQRSALILATRAYPRALLRHYRRSVASCQDLQMWRSVYNTQLLHLQKVTMVDGRSYHPTMFQQRANRFSIHPGKWIAIEWSNFGSPSTVSDSDKLARHQIYTDGSKSESGTGAAFVVFRNGELWMSRSYKMTASNTSSQAEILAIWKALQWLLADGVGIKSCAVITDSQSSLQALANPSCDWLLVMRAKAAYRQLLRNGVAVRFFWTKGHATCEGNKIADSAAREASASGLSIEVPLPHSYFKSVTAKMAYRLWEQRWRASNGSSATHLFIEVPTSKSWSNCSEMTQVLTKHAQYPEYLHRRGVINSPRCVCGEMGSLDHYLAACPETLCFRQKLTSRCSTYADLPRLSGFPLI
>R1A_NVi_gag#LINE/R1 1166-2626  [Nasonia vitripennis]
MGAKSRRKKKRASSDAASSSRSDPSPEARIRAADEAGSESESHAHARCRSPIANGKRLWAKTPTNASVNASDSQSECEEMEVVPVSAKRGLPASESAVGPRAKKRQQTLLSPRVSVERMSAHVNEEPQVNASVNKNVQTCVNDSERVGDMARIGDKLREFILNDANKVSKHASKIVLGCVSEYEQFLMRLQCENAELRGRLHESEKLCASVVKECARAPMAPYTTVAAARGVPEQRATTKPVSVAKPSYALVLKGNENEPNTAILNRLKSASGCENVRVKNVREARNGGVIVETLSEKERECLKRAVSNVRVNLSANEPRKLNPRVIVYDVPNEMTEERFLSSLYEKNLSGVIERENVGREVRVASRQSKPGVSVGNVILDVAGRIRDRLLEEKRVYIEWNAYRVSKYENVPRCYGCFSYGHLLRECKGERLCYRCGKPGHRGAGCREREDCGNCRARGLSATHSALSPECPEYKWRLERLRGRISS
>R1A_NVi_pol#LINE/R1 2631-5801  [Nasonia vitripennis]
MAHSREIRVLQVNAQRGYSVMCDLGERLLNESIDVCLIQEPHCVNGRVVGLPYGTRVFVSKSGRAALVVAGDTIECLSLDDWDCENGVCVWTKGVHGEVYMVSVYCRFGEDIEPYLLSLDRLLERIAGHECILGMDANASSGLWHSKDSTSSREREARGHALERWILANEWGLNILNEPSEHYTFSGPRGQSDIDVTLSNIRRHDCKLEWEVRCEWGISDHNPILIRLWHGVNEASPAAVPPPLSWRSWKHGYGRGLYMDVLNDRADELGLTSFSDLDSSQMALKMTEWLTSANDECMKRAKVMRREWVVWWTDELEYMKRDVQRCRKKYQRARCRQDENVADLKSEYRKCEREYKCSMREVKERDWREAVGRDANDDPWGRVYRICRGKNKKSDLAGLKTPDGCTKTWMESASVLMKDFYPRDEGTNVERMPEMLNVTNDGRGEEEYEWSEVNLAVDKLRQRKAPGLDGITSSVIKYAWLAIPMYMKCMYDRCLKDGNFPAIWKKARVVVLLKGGDRDKKDPGSYRNISLLSGLGKPLERLMIERMMERMNGKWNDCQYGFREGRSCEDAWMRFKDSVNSVNSKYAVGILVDFKGAFNNLRWSVILRYLLECGCDEHEMRLWMSYFNERYASLSSEMNEVMVKEERGCPQGSISGPYMWNLCMNGLLDRLSAMNERIVAYADDLMIVANGNSRMEMERMADECMRIVYEWGREVGVSVSEKKTVCIMLKGKLNVDGRKMRVTVAEGTLSSIGYVKSARYLGVCMGERMSFAEHIRGLRTKVMGAIGGLRRVMRKEWGVKKKTACTWTKGLLLAGVMYGSSVWYESMKYKTMRESMNSIQRCAMYACLRVCRTVSTEAMQVLLGWLPWDLECVKRANAFKARRGIGMNESDLVTDAEIVEKGVRDACKLMKERVHEIWQRRWSESTKGRVTHEWMCDVNFACERMWFEPSLRVGYILTGHGTLNAWLYDRGLADSAACPCGAPREDWMHVLTRCDMYESFRRLDEMGVLEDANGRMDVSGVLSARSQYECLCTFIERAYRMRASVISRMNEEERPNE
>R1A_SS_pol#LINE/R1 1-1532 Fragment, via tfasty with R1B_DS_pol, 1 frameshift. [Scolopendra]
AMADDSLVLVAAPSVKRIEELWIVCREDLENWATENNLEFNREKTGLLFHSWRPVLRPPVLRFGGVDLVPSTGVRYLGIIVDVKFDWLAHVRFLAGKVKRMANRISVVVGANWGIKPLVLRTLYLRAILPMLLYGARIWGLRAGRVFMQKRVNALPRFLLLNIARTYRTVSTEALYVLCGLPLLAIVAEETALHYARLSGPDYCRDTPVAEWTHPADRVALPVGTYETMDATRLQLFTDGSRREGRTASGFVIYDNGVQIDHSSVRLGDGNSVFQSEVLAIWFAVMAIRRLAVDEASLFSDSLSALTAISGSNPVDALVRRTRVAVDELCTTCSLHLGWVKAHVGIAGNEEADRFAKLALDKDIEHRKLLPRSHSSLIKQRTIFFQWQALWEGHKDGRPVFALFPKVSSRGALFGRKMMQVITEHGNFAKYLHRFALMESPACRCGGGEESVAHILRECDLPFRAAARSRFLREMVPRGLTWADMDGSWCRDEFATHFERFVNDVISDPFT
>R1B_DAn_gag#LINE/R1 562-1938 [Drosophila ananassae]
MPRGRGGRSRSGSRSSVASVASVASAASVAVDVRQARKSRERSISFDMESEVEPKRLDQRSSPKKNNGAEMAFSCPGGLNGAGLEAHGANTVAPAAATIAAIIAEPVAVAPAAVAPVAVLEHATARAAVAAGQGAVLAELSATQRAVRGALLSGNLQTVSASMSRYDELVVALMLRVAELETRVAMPPPMTSTLHHNAVGQAAVPVAPVPVPRTKVRETWSCVVKGTDPELSSSQIAEKVRKEVAPALGVRVHEVRELKRGGAIIRTPSASEASKVAASRKFAEVGLSVERNQAVKPRLTVFDVDTALSPDVFMEELYANNLKDEMTVADFKKSVHFASKPWTAADGGTTNVTLEVSEKALAALDTGRVYIKWFSFRCRSQVRTYACHRCVGFDHKVQECRLKVSVCRQCGQGGHVAAKCTNPVDCRNCRFKGLPSGHNMLSAACPVYSAVLARVNARH
>R1B_DAn_pol#LINE/R1 1928-5005 [Drosophila ananassae]
MQDTNMSRLLQINCQGSYAVMCDVGQMMCERGCVVALLQEPYNRYGGVRGLPANMRVFPDSRGRAAVVVNDPGIECTLVNSTDWGVCVGLEGIFGRLYVVSIYCKFSEPLDPYLQYMNAVLLQVSSNPVILGLDANASSPLWFSKMSRLGPGHRNYDRGETLAEWVITQDVQVVNKPSEWYTFNSPNGASDIDVTLANEAAMRVCDFQWNVLGGQGVSDHNPIEIVVTRAVALEPNERLNGWCYRGANWALHGHYVREAATQVPFSTFCAMNVDEQVACVTEWVTSANDSMFARHRKVTRKRVKWWTRELQAEKRSLRSLRKRFQRARRTNADGVAQLRDQLSTRVHEYKHRVLRVKDDEWRSFVDRNKHDPWGRVYKILRENGKEGSRDICALRVEGRDLITWKDCVECLLSEFFPREDRQHSVPDAVGDADPLLMSELQWAFTKLRSGKAPGLDGFTGEICKSVWKSIPDHLYELYSKCVSEGAFPSAWKCTRVSVLLKSLDRDRSNPRSFRGISLVPVLAKVLERVLVERLQESVGSQMSDRQFGFREGRCAEDAWRSVKDSVRSSNSKYVLGVFVDFKGAFDYLSWASVIQRLNECGCRDVALWKSYFSGRNACVVGVNEVVWKDVARGCPQGSICGPFIWNLMMDPLLWQLEQAWQCCAYADDLLILVEGQSRSMIEASASECLRIVGQWGDSVGVSLARDKTVTMLLKGSLSRSPVVRLDGSSIRYAKQVKYLGVTVGERLRFAPHLANLKDRLVGTVGRLRRVLRSEWGLSRKAARTIYGGLFVACAASGSPSWYDAVLDVRGRMKILSVQRLILLGCMPVCRTVSTEALQVLFGAVPLDLEIRRRAVSYKLKKGLPLLQDEWLFREMSGGNVESLGPSEWKSMLRECVLSDWQARWDNSENGRATYEFIPDVSFVVDRPDFGFNLSAGFLLTGHGSLNAFLHRRNLAGSPECRCGSRQETWKHVLCECPLYDDLRDLGGLGVVQAGGDFDFSQVLSTSDRISRLNVFARAVFSRRRMR
>R1B_DS_pol#LINE/R1 1-1467 Fragment [Dugesiella]
AYADDLLVLIGGNNRDRLKEDVSSIFTDINDWALANKLSINKEKTRAIWLPGRDQGLLLRNVKLPEVKLEQHVKYLGITYSSDGTFKEHQRRIDSKIRKLNNKIRSIRIGNRGLPGEKMRRIYKTVIEKIISYGANTWTKALGSVEKKKLNSLQRTMLLSVTEAYRTTSTEAMQVIANITPLDLILRAESKRADILECGGSATVSGRPIGASGIEMRPHKFATHPKNWTRVGWAEWHDRDDYILQIYTDGSKTSDGTGAAFVVLDRGRQIFSAGFSLSKHHTHYQAEAVAILKATMWFAEECQGNKVAIISDSQSALKALYRTQEVSPTIRDIKRTITTIKRQGRQIDLYWTKGHAGQAGNEMADRAAKEAVISGQRYVMPRPVSWVKALIKKETLREWATRWAGSDKGRHTHNIISAPGFKEWIFSKEITQILTNHGRTPSYMHRFGLTSSPLCSCGGVGDWEHYFFFCRSTEAVAGVSADYRTYNN
>R1B_NVi_gag#LINE/R1 610-2376  [Nasonia vitripennis]
MTNKNQASDKTKEGKGGKENVRRSRRRVSSASSASSGDRNRTPYRGPRSRSQSRSGTGLRDEPSDALDPKSKKEHQRREKAREKDLRDQELERAILKERGMEAGKVTEERGMETEEGVMETEDIPEPTAQPENEVIVEEKEEYAVKNKRTLKRKTDAEEKRLSDEDKKMKKMKNRQKRAEARAEITAKLKEEAKDRQRKKVDKRDEKEKSLQLLKELKEATEKLAGMKDVNLIETESDGESEEEDGEGRVKESVHASALETVGQLANEIRLFMLSQLNVNKSVCVTVFEKLGKMEQIMNGLVCENEGLKSKLECMGAKEGANANVGASSASAAVPRAAPATPAVRPSYAVIVRGKENESSDMVRKKIVDEVSKNVDVRVKAVRKVRDGVVVETVSVNECNRLLNEKQFERVGLQVTEARRFGPKVILYDVPCSMTDETLLTEVYQKNMDGCVSERDFHESVKVLFRSGKKGMDVSNVILEVSPRVKMRLLGQSRVYVKWMSFRVNEFERINRCFNCFDFGHVARQCKRERVCVRCCKSGHVGSECREQFNCGNCARRGMPAGHPVTSSECPGYKMRLRWQKERTLQDGE
>R1B_NVi_pol#LINE/R1 2369-5506  [Nasonia vitripennis]
MANREARFLQLNCQRSMNVMSDLSECIVNEGIDVCLLQEPYFAHGKVCGLPSGMRVFWSRSGLSAIVVNDLNCVCMLIEELVSENSVCVSVKGEYGEIFMISLYSKYDGEIENDIEYLEKVFECLRGKRVLVCMDANASSELWFSKGVYVGKPRGNRGEKLCEWIAGSEWSVDLLNEPSEWYTFDGPRGQSDIDITLAGGFENECEFTWSVMCEWSLSDHNPIMIRMRMNGGRENEANVDLRWRMKTNKWSKYTKRLREIAYEFGYGEYVELCAREKVKKMDEWITRVNDECFERVSVHNNKVVWWNKELERMKKNVCKLRKTYQKMRCKNDERMEESRNEWKKCETQYARKLKEEKNDDWKKYMSTKGNQKPWKARNICIGKRREELASLRKAGGGLTTSWAETADLLLNEFFPPDDGVPAPEVQELFLDVNDREYEWNEISMAVKKMNMRKSPGMDGIMNEMILRVHRAIPGFMKEMYDSCLRESYFPNEWKRAKVVVLLKSVDKDKASPRSYRPISLLPGLGKVLERMMVERLTKIVNGRWSEYQYGFRNGRSCEDAWNKMKESVNASEHKYVCGVFVDFKGAFDNLLWRTIMATLEEYGCGGMDLEMWKSYFTDRRVCMKNSMEEVWKQVSRGCPQGSIGGPILWNLSMNGMLIELAGSGVSVCAFADDVAILAEGNTRKEVERVINEKMEIVYKWGEKMGVSVSEEKTVCMLLKGKYVTSNRAVRVSKTINVYKRIKYVSCFKYLGVNVTEGMGFGEHVRGMKVKVAKGVQKLKRVLRRDWGLRRAASHLVLRGTFLPQVSYCASAWYEVLKYEYGRNALNAAMRYVMYACLNVCRTVSTEAMQVLTGWLPWDLECLKRANVYKVRKGLSMNEMDVVKNEEVESMSVIKLERLVDERVYEIWQERWDVSMKGRVTARFIKDVKYAGRSRSFEPDRWVVNILTGHGTLNAFLHKRGLSESASCMCGDVSEDWEHVLCRCSMYESFRNLDEMGVTVCVNGEYEFTGVLSSNVTYGKMCEFINRAYEMRESVRRRLNLELDVNG
>R1B_SS_pol#LINE/R1 1-1481 Fragment, via tfasty with TRAS3_BM_pol, 2 frameshifts. [Scolopendra]
AFADDTAIIIEETSIKKIEDSWQEAERRVQRWATRNKIVFNENKTEAIFFPAKHAKKVPIIRFGLNLVGIKESLRYLGVYLDKSLLWRVHLQVVQGKVGRIALKMRQVVGTHWGIDQMTMRVLYKRALLPLVIYGCEIWGECARKKWGVKRLEQIQRPLLLGVVKACRTTSTHALQVLAGLPPLSVEIIARRQHYARLGADDYESHIPVCDWVHPAHIEEEAVGTYPLEIEARTALFTDGSKTEDGVGYAVVVMEGGEEVRTHTGCLPSYCSIAQAEMRAIYWGSSVLEDCGNGPACLCSDSRSSLQHIANGRQGDATVMAADALQRCREQQRAVSLSWIKAHSGQAGNERADELARQAAKNDLSTGEEHVLRPKAYSRDILRNEVRALWQQQWAISIKGRWTFEVLPQVSQSPPVLTSKMVQLLTNHGNFAQYRSRFRLTEEDGVCICKQGQETAHDVLVECGLPHRARARSRIEQMAVVQGVQTWQPECME
>R1C_NGi_gag#LINE/R1 668-2368 R1C_NLo_gag and R1C_NVi_gag over 90% identical [Nasonia giraulti]
MDTIKTQLRKMTRSSKGVGCSREDFLKKDSKGGGGDSEDTRSSVYSADSLRERSRSRSPTGLKSTKDFELVESKAARKQRKAEEKRRRRENANASVNDRMNKSVSCSVQDVSKKVNVSRSENDVSKTGATESMEVGMEECASMKESANVKRTVKRNAVGQDRFKGAKGELFVVCENLRQPLKRIKREVADAEVPVDSTSVSVNESAEVSEVVVDELRAVTDGLRGHLLSDANKFTKWQANSVLDHASKFEGLVQRLMLENARLRGELSAHTGIKADLVNVRETVRRVDESMNVVKTRVAAASRAPPAAAGAAPGKGSGANVGPKPSFALVVRGANEQLTCDEVRRRMIESTSEDVNVRVRTIRPARGGGVVVETASDGERKALSRCAGLAEAGLRAAEPKVMDPRVIVYDVPNEMTNEHLLRGMYDKSLSEHVSVNEFTKRVKIVRRVDGQRLGNVIVELPLPWRDRLLQDGRVFVGWNSFKCCSYERVMRCFRCQGYDHRAKECKSEPLCYRCGKSGHRINVCKAAEDCSNCRARRLPSEHSARSPECPVYAWRLQLLRSRFVNNG
>R1C_NGi_pol#LINE/R1 2364-5567 R1C_NLo_pol and R1C_NVi_pol over 90% identical [Nasonia giraulti]
MAESQTNGTNVCVDVRILQVNCQKSYAAMCDIANYALEDGIEICLFQEPYVYKDRVCGLPAGSRMYLSKSGEAAVVVFGKRYECMLLNEGAHEDAVCVWVKGPVGEILAVSLYCRPNGSMQGCVDYLDRVVSTRNGRRLLVGMDANAASDLWHSKSMVRAWQAVRRGAVLRDWVVHAEMDVLNVPTLAYTFSGARGESDIDVTLYKGSECQFEWMLKDDWGISDHNPIVITMSTGENVDVNGERMQKWNARKCNWLLYRGLIETFASDYGYDEYSVLGAEEKLTLLYKWMTEANEVCLEKVVTRPAPKRKSVVWWNESLSEKKRMVRERRRAYQRERARTGDPDRMKWREWKECEREYRRMMKDAKESDWHGTVERKGETDPWGVISAFCMGKLNPVSLAGLRTANGCTKTWMESARVLLDEFFPADDGIPAEEVYGVQMDMNEFCMGELDEAVLGMKMRKAPGLDGLTNEMLRQVWKAAPLFLKGLFDTCLSEGLFPHKWKEARVVVLLKGADKDVAESRSYRPISLLGSPGKVMERMLVARLMRHMEGKWNECQYGFMKGKCTEDAWARAKENVRAAESEYVLGIFVDFKGAFDNLLWRVALQKLREAGCTYEELRVWHSYFSDRSVCMYNGMDVVEKCARRGCPQGSISGPPVWNLGMNDLLNELSGLGVEVVAYADDLLLLVQGNRRNELEQSASEALSVVYRYGMNIGVEVSDSKTVCMMLKGSLNMLNRVVHVSTNETDDKKIRCVDRVKYLGVNVGVGMDFSVHIGGMRKRVTTVIMRLRRVLRKSWGLKRGVVSMMVNGLILPAVMYGASVWYEQLHKRKLRGSRRLSEELVSCQRVVLYACTRVCRTVSTEAMQILFGSLPWDIECIRQADLHKVRKGLPMNENDLVADEDLNELSLHECRELVDQRALAAWQDRWEATSNGRVTYEWIRDVGFSGRSMKYFEPSLRVCYILTGHGSLNSFLFSRNLSNSPACACGAEREEWIHVLCECDMYAAFRDLDSIGVRRTEEGWDVSGVLCDRAKYECLCAFVERAFSMRESIVQRMREREEENGENEELRLG
>R1D_NLo_pol#LINE/R1 2640-6158 R1D_NGi_pol and R1D_NVi_pol near-identical. [Nasonia longicornis]
MPGPQKKNVAEVQPEERSPTTPGNPLVAESGRLLTGAREDLEHPSVRTWPVRSGGGLRRLGEGEVGLRAVSVRLVRDERIEKMARKTVEVEEPGSKNEIRFLQINAGGGQLVNAEICELIASKKIDIVLAQEPYSKVNKGSRYFTGLRRASRAICLKSAGTKTAPKAFVAVPNPDFHAFFVSALSTQHCVVAEVHTPSVTFFAVSMYFQFCDDIEVHLGQLEKVLENLSGQKVVIGIDANAESSLWSPRGTNEKGEKLERLIAAFGLHVVNDRTQPPTFEERGVSSYIDVTLVSGSMIAEVQSWKVKRDWTSSDHNAIVFKITTVAQTDRVDSSRFNIRRADWGLLDSTIKELSVSHLDHIILDSAEEVERMADALQKVLYEACETAIPRRRRIRKNNPWWTRELTDKKSELYSARRRMQQQWSLPGHSLRKAEYRALLRDYCRSVKGAKVGSWQEVVTVRGNEEPWGVVYKQLRGKLQNERTLSSVRCGDTESMSMLETANRLLEVHVPDDTPFNETPEQAQIRESINSPPETEDAAPFEQWEIALILASLKNNKAPGFDLLEVRVLKAAIKAIPHHFLRLFNACLEHGVFPRAWKQASLIFLPKGGKDSNDSKSYRPISLLPVTGKLYERLVKRRLSDTALGPDMISDRQFGFRAGMSTEDAIIELRRLTAASPKKQVAALLFDVKGAFDCIWRPAILQSLKEKNCPKNVYKLLVSYFEDRQAQVVWGTNQVSKQATRGCPQGSVLGPSGWNLGFDPLLRSLEQGVVTEGGGKLPINFVAYADDLAVLVEGDSRAEIEKVGKAVVKHIVEKCSAIKLEVSESKTVGIFVKKPKVVGSKAVKINRKDCRKGGARNPKIELGGKSISFEQSVRYLGVHFDANLGISAHCKYLREKLVPLFSDLRKLAQCQWGLGHRALETIYKGVFVPTVCYASAAWYKEGAHTDRILEDLHRQILIAITRCYRSTSYEAACVLAGTLPICIQLRVSMAKYHLRKGEDAEIGGVVIRHDPEGLKENYNRVLEVANEMWQARWEASEQGNATRELFFPDVVDRVKSDWIRPDHFTSQVLTGHGYFNEKLHQLSLAKAAACLCCGEPDNNLHFLLECPAFAEFRDELITPISGGLEAPEATLMLVSSPEGFAALKEYSRVAFECKRQLENALTESDEGLSSESEE
>R1E_NGi_gag#LINE/R1 2500-3930 [Nasonia giraulti]
MASNKKHTPAILVESENAPEHTLNPPTSTDAAANLGFASNTGLQRDRHRSISSVSSIASDENSSAKTIGDTFAKRAKRKREEKVPDEVDSGNPLERRNHEIKEVRKTFEQATLELRSICSIEKDKNRCKLNKGDLNKFTSVLSAALQLVEDAITDKYDYGILLQQKNEQLKQLREVLSARPRSYADAAGADRRMKQTLAPKRPPISSGANKPRPKNAGRPSATVVVTCGRENGESPKADDIKEKLMSAVNPAAEGIRIKSVRVAKTGKVYVETNSSEDGKKLSELPQLRDAGLIAEVPKGRKPRLILYDVPRTMEPSEVGAALLQMNADVFEGIERSAFEKDCNFLFKTGKRDADVVHWVLETSSELRDRLREKERLYLGWRRCRIQDYISLTRCYKCQGLGHIGKYCKAKEETCGHCGGQGHKKESCPKKDQPAKCALCLRRDKPSDHSVMDPKCPSFKSAYDVYTQSIDYGGPVR
>R1E_NGi_pol#LINE/R1 3936-7070 [Nasonia giraulti]
MASTINVLQHNLGRGKTSTAELRDAAAAVRASVLLVQEPHAREDIGVIGLGSLSNKVLTGAKTGERPWACVVITDRCLDVVVIPHLSSPFCVCAHVSTAVGDFHVVSAYFPPSQPLDSHLRMLGRIHDGLRSSKVILGIDVNAWSMRWGSNTTDRRGQEVEEFLATTGWLVVNEPGQLPTFSTANGESHIDVTLVGAGLSNLIREWNVREGWTSSDHRVIQITLGSPEPRQLIRIPRYNIKRANWEGFRGNVISHLDTLDQAVTCSEHLERAATSLGEIFHQASATNNNIPRKRHFIRSVPWWNRELTFWKRRVNRARRAFQGARRSSGAPALRRIYSVLKREYNKKVYLAKTGSWREFVTLDGNEDAYGVANKIIRKRFTPDTALSSISTHGGATLDWQDTAEKLLDALIPDCPPGDRMDLRELCLSFPEGEAEACPHWTAGEVTRVIKSLPRSKAPGGDLIEAAMIKSLANSPEFIEALVGLYNKCLDIGVFPCTWKRGLIRVLLKSVEKDPADPGSYRPICLLPLFGKILEKLIKLRLSGVLNHPEYASANQYGFRAGRSTEDALYELRRNVNSSSKKYALALLYDAKAAFDHLWWPALIRELQQRGCPNNLLMLIGSYLSGRVVELTGSYNSLEKSVTRGCPQGSILGPDFWNIVFDTLLKLLEGLNLNIKIIAYADDLLVLVESDSRRMLEVGGQEVTDTVQDWFVRNKLILSESKSEMILLKGALPSRDPIIKINNRALALAESVKYLGVHVGERFSITKHLLAAGSKCRLVFDLLARSARANWGLRFRSLDIMYKGIFLAVMCYGAGAWGDLVKTNQHRQTLLTIQRAILLRVTKAYRTTSGDALCVIAGAIPLDLVIRERMILYMIRKNLEAGFGRYWFLPGSSKVEAKRGLREAILREWQMRWETSSKGRETFAYFPDVAKRVGSDWVKPGHYMAQALSGHGDFNAKLHSFRLKESPLCPCGMEETSSHLLFDCELWNDIRSEFVAKLEEAGLEWPPQRQRLMDKDVYQIFDGYVTAVLREKAARAAAGQTQAANN
>R1NS-1_CQ_gag#LINE/R1 893-2506 [Culex quinquefasciatus]
MVNSKTNVHYTXEEVXRLNXXIRSAGNIRSDITRSGLSLXVLARXAEELWKEXRSKYNALAEEASAEKAARLLLEZRVXALEVHNDSHPSIEVEDQVTHSEFXXLREQNAALQATVEELSKTIAELAAAKPASEQAALDSEVYALREQNQALTAEVAALRETAVTQPPSESQSGAQATLSSELAKAQQEILTLREELKGLKEEEAKRESEPKSGKSGKTGKNKGKNKGKNQQNQKPKQAKGGAKNADPKPAVPKTPPGSKEDGTSPEGASQGGNPGDGSGEGNANDGFTVVNRRKPRSKHKPRTRNEAIAIKADEKSYASLLRNMRSNDDFKDLGEATKSVRRTRRNELLLILKKGAKPSSEYARLVAESVGSDEIKVRSLCPETTLQCKNLDETVTAEDLLDAITTQCLTGTLSAPVQLRKYNQGTQTATFKLPAKIAAMVLKVGKIKVNWSVCPVSAIERPTVCFRCLEYGHKSWACKGPDRSKLCRRCGAEGHQSKGCTAKAKCLICTGDGSNHATGSYTCPSFRSAFDKLRPCK
>R1NS-1_CQ_pol#LINE/R1 2500-5427 [Culex quinquefasciatus]
VQVIQLNLNHCETAQQLLFQTVAEKKCDVALLSEPYRIPEGNRNWLSDPPKAAAIWVTGQFPIQELVAAEEGFVIAKVNGVFYCSCYAPPRWSIDRFDRMLDRLTDALTGKTPAVVAGDFNAWSTQWGSRESNRRGQDLLEALARLNVDLANEGSASTFRRNGVSSIVDVTFCSPSLMASMDWKVDEGYTHSDHQAVTFRICRVAPRPAQPAPRQECRWKTSTLNKEVFVEALRRESATRDILELDCDGLMTILVGASDAAMPRQAKPRNARTPVYWWNDDIAAIRAASLRARRKLQRARSDEQREARRVIYKIAKATLSKAIKESKRNCFGNLCQEANNAPWGNAYRIVMAKLKSGAVAIDRSPEMMSRIIDGLFPHHEVEPWPTTPYYHEGLTEDEQSITNEELIKAASALKANKAPGPDGIPNQVLKLAIEENPDMFRSALQKCMDTGVFPDRWKRQRLVLLPKPGKPPGDPSAYRPICLIDTAGKLLERVILNRLTIYLERGLSDRQFGFRKGRSTVDAIRAVLEKAKIAVEPKRRGMRFCAVITLDVKNAFNSASWDAIARSLHRFRVPNYLCKLLKSYFENRVLLYETDEGLRELIITAGVPQGSLIGPGLWNGMYDGVLTLQLPTGVSIVGFADDIVLMVLGESQLQVEVRATEAIRTIEEWMGLHHLGLAHQKTEVVAVNNFKSAQCINVRAGNCTIDSKRSLLYLGIRVDDKLSFNSHVDYVCEKAMKAIASLSRMMGNSSAVKSSKRRLLATVVASVLRYGAPAWGAALEAKTNLQKVTSVYRLICLRVCSAYRTASAEAACVLASMIPIGLLVREDMRCHELRGVGGHRASARTATMAEWQRSWDDSTKGRWTHRVIPNLERWVNRTHGEINFYLTQVLSGHGCFRQYLHRFGHATSPNCPNCTGTVETVEHVVFECPRFQSSREILLLGCGTDTTPDNLTDRMCQSEEAWGAASTAITQIMLKL
>R1_DM_gag#LINE/R1 319-1734 [Drosophila fruit fly genus]
PVSASIRLLDSSKGGATIGATPMESDSSVSALSGSSASKVSRRGRRRSHLASKSSAPTQAKLVALASNGVPEPVGVLEEAFSSLEDARAATSNAANDAAPPAAAPAVDHTVAPDVSTAAKIAATTATAATAAARAGQAAMMAELSATQRMVRNSFRSLGGVDTEELSCAISRYDELVMALMLRCGELETRLAMPPPPPPPSKANTTAANAPQMPQVAPIAAPRTTKVRETWSAVVKCDDPALSGKAIAEKVRTMVAPSLGVRVHEVRELPSRWWCDHSYSSVGELQKVMASKRFAELGLNVARNAAEKPKVIVYDVDTAIGPEEFMQELHENNFDSEMTLAQFKKSVHLVTKAWSATDGATVNVTLEVDDRAMAKLDVGRVYIKWFSFRCRSQVRTYACHRCVGFDHKVSECRQKESVCRQCGQQGHTAAKCQNPVDCRNCRHRGQPSGHYMLSNACPIYGALLARVQARH
>R1_DM_pol#LINE/R1 1728-4793 [Drosophila fruit fly genus]
TLMFSFIQANCGRGRAATIELGVRLRRSESMFALVQEPYLGGDEMDVLPEGMRVFTDRRGKAAILVDHQEAICMPVETLTTDYGVCLVVKGSFGSIFLCAAYCQFDAPLEPYLRYMDAVLLQASRTPAILGLDANAVSPMWLSKLSRHAEGQANYRRGELLSEWMLEARVAALNQSTEVYTFDNHRATSDIDVTIVNEAASMWATYEWRVDEWELSDHNIITVVAEPTTARSVESIAPVPSWNFSNARWRLFKEEMVSRIAELPENFSESPLDQQVSTLRSIVHSVCDTALGRKLTRSPSRRARWWTADLCAARREVRRLRRLLQDGRRRDDDAAVELVVVELRRASAYYKKLIGRAKMDDWKRFVGDHADDPWGRVYKICRGRRKCTEIGCLRVNGELITDWGDCARVLLRNFFPVAESEAPTAIAEEVPPALEVFEVDTCVARLKSRRSPGLDGINGTICKAVWRAIPEHLASLFSRCIRLGYFPAEWKCPRVVSLLKGPDKDKCEPSSYRGICLLPVFGKVLEAIMVNRVREVLPEGCRWQFGFRQGRCVEDAWRHVKSSVGASAAQYVLGTFVDFKGAFDNVEWSAALSRLADLGCREMGLWQSFFSGRRAVIRSSSGTVEVPVTRGCPQGSISGPFIWDILMDVLLQRLQPYCQLSAYADDLLLLVEGNSRAVLEEKGAQLMSIVETWGAEVGDCLSTSKTVIMLLKGALRRAPTVRFAGRNLPYVRSCRYLGITVSEGMKFLTHIASLRQRMTGVVGALARVLRADWGFSPRARRTIYDGLMAPCVLFGAPVWYDTAEQVAAQRRLASCQRLILLGCLSVCRTVSTVALQVLGGAPPLDLAAKLLAIKYKLKRGFPLEENDWLYGEDIACLSWEQRKTRLEECLIQSWQNRWDDDSEPGRVTHRFIPYVTLAYRDPSFGFSMRTSFLLTGHGSFNAFLHGRALSDTTACACGDPYEDWMHILCACPLYADLRDLDGLGVQRLGENWIFEGILDDQEKTQRLAMFAEEVFLRRRAL
>R1_DMo_gag#LINE/R1 328-1836 [Drosophila mojavensis]
MDSEASSGSSTMSKKKKRGRGAKSHLRHAGDAAAMPPPTDSPPRKLRVHVDSSADESDASLVATAATVASAASAAPTAAPAANAAANTAAPAAIPAMEAILAAAAAAAAPAAAAAPAAAAPAAAATHAARNPAPLEAPSTSAAAAAASAHSVSSVPAGAGTASSNSMVQRMLAIERELRRAVVADNVPGAVALSVLDNAAKFQELILEMYGRMKELETIVRTRPQATAPQTSAAPAASYAAVTATAVAAPVALPRARKIAETWSAIVTSNNPEETPQQVAERVRKEVAPALGVRVHEVRELKRGGAVIRTPSAGEIRRVLANPKFKEVGLDVKENAAPRPRINVINVDSSISPNKFMEGLYKNHFFGHCSNAAFEKAVKIASKPWSSEDGPTVNIILEMERKALDILEDSERIYVEWFSFRWHPLTPTYACFRCFSFDHKVAMCRMKEQTCKRCGQSGHRVSGCRNPVHCRNCSFKGLPAGHHMLSETCPIYGRVLARVAAKH
>R1_DMo_pol#LINE/R1 1842-4943 [Drosophila mojavensis]
MFSIIQANCGRSRAAVVDLGVRMRNSGAMFALLQEPYVDRGGRITGLPAGMRVFSDRRNKATIVVDDQEVVCMPVSSLITEFGVCVSVSGNFGSIFLTSVYCQFNAELEPYLLYMDAVLLLASRTPVIYGLDANAVSPLWFSKLPERSRGYLNRQRGELLADWVQGSRAGVLNVRSRVYTFDNRRARSDIDVTIVSDSASTWAAYDWSVSEWDLSDHNIITVVVTLDPESTVESFAPVPSWQLQNADWRRFGDELRTASMDIPLEDFRLLSSDAQVTALRSLVHQVSDTLFGRRQPRARRRVGWWNAALTDARRTLRRARRRLQHARRTQSESASALASYFRITRKEYERMMLKAKEEDWRRYVGEHQDDPWGSVYKICHGRKTRTDFGCLRWNNEQYVTWHDCANVLLRNFFPAAERPVDIVVPREVPPALETFEVEMCIARVRSRRSPGLDGITGGMVKAAWRAIPEHMTALYSRCLADGYFPLEWKRPRVVALLKGLDKDRSDPASYRGICLLPVFGKVLEGIMVNRVKEMLTDESRWQFGFRPGRCVEDAWRHVLSSVEASSARYVLGVFIDFKGAFDHVEWDAALRRLSDLGCREIGIWRSFFSDRKASIVSSFGEANVNVSRGCPQGSISGPFIWNILMDVLLRRLEAHCTFSAYADDLLLLVEGNSRSQLELTGAQLMEIVGGWGIEVGVSVSATKTVTMLLKGKLSAGRNPAVRFAGANLRYVTQYRYLGITAGERLSFLPHIASLRDRLAGVVGALTRVLRVDWGLSPRARRRIYAGLMVPCALFGASVWYTVVMRLVGARRSLKSCHRIILIGCLPTCRTVSTDALEVLAGAPPLDLVATRNAMQFKLKRSYPMVEGDWLYDQDVSTLDRTMRRALLDERLLREWQIRWDDSEHGRVTHRFIPDVSFVYSRPDFSFTMPTSFLITGHGSLNAFLHARGLSETAGCLCGHPLEDWLHVLCACPLYADVRDLQGLRIQQSESGDWTMERTLMEAESMQLLEDYARTVFSRRRMLMDGMGPGRPVPD
>R1_DPe_gag#LINE/R1 434-1840 R1_DPs_gag near-identical [Drosophila persimilis]]
MEIETEADASDTSVASVGASSSSSVPARRRGRPKSSAAKQGAKKIGLGIGLAGERPIPAERSPPTSLPFEQAPSTSAAAAATTAASTSAAAAATAAAPLPPRCHTAATTAATTAATCPATDIVAAGYSAIIAEMSAIRMAVSKAVLKGLMPPEASMEILVATNRYDELVMALAGEKVRLEERARMPPPPRPAAAAHTGTTAVTTAAYATAFPGLPAPSAVAAPIPKPRDTWSALIKSKNPEETSKELVERVKKTVVPTLGVRVHEVRELKSGGAIIRTPSVSELRKVVASSKFTEAGLEVKKRPETKPQVVVYDVDTSITPEEFMEELFTKNLEETMTAAEFKKSVHLGSKPWSVTDGATINVTLEVDAKAQEALRECVYIKWFRCRCRSLVRTYACHRCAGFDHKVSQCRLKENVCHRCGQNGHNVARCPNPVDCRNCRFKGYPAAHSMLSAACPIYGAVLARVQARH
>R1_DPe_pol#LINE/R1 1843-4956 R1_DPs_pol near-identical [Drosophila persimilis]
MFSFIQANCGRGRAAVMELGAIMRSSGRQFALVQEPYVDGAGRITGLPSGMRVFQDRRGKAAIIVDEPDAICMPMETLTTDFGVCVRVTGRFGSIFLCSVYCQFDTDLAPYLRYLDAVLLLGSRTPVIFGLDANAVSPAWFSKLSEHNRGQANYARGELLSEWITEMRAGVLNEASRVFTFDNRRGQSDIDVTIVNQAATMWATYDWEVKEWDTSDHNMIHVVVTTDPNDTVEPIAPVPSWKLSNARWRLFEEEVVREIAELPEDIAESPLDNQVSALRSVVHSVCDRVLGRSTPRAARKVVWWTAELHSKRREVRRLRRRLQDARRHETDAAEELVLALRISSAQYKKLILRSKEDNWRRFVGENRDDPWGHVYRICRGRKKSTEIGCLRTDGRLVATWRDCAGVLLRNFFPVAETNAHIAIPIEAPPALEAFEVDACVARLKSRRSPGMDGITGAICKALWRAIPQHMTAMYSRCLETGYFPTEWKHPRVVPLLKGPDKDRTDPTSYRGICLLPVLGKVLEGIMVNRLKDTIPDGCRWQFGFRQGRCVEDAWKHVVSTVSASRSKYVLGVFVDFKGAFDNVEWNAALRRLLELGCREASLWRSFFSGRSASIVSRHGVATVPVTRGCPQGSISGPFIWNILMDVLLQRLEPLGALSAYADDLLLLIEGNARSELEQKGGELMSIVGAWGVEVGVAVSTSKTAIMLLKGILRRPPVVRFAGASLPYKRKYRYLGITVGERLSFLPHITGLRDKLTGVVGALSRVLRVDWGLSPRAKRTIYAGLMVPCALFGASVWSVVTTTQVVARRHLLACQRIVLIGCLPVCRTVSTMALQVLAGAPPFDLVARRLAISFKLKRDYPLEESDWLYGEDLANLSWKQKMARLDEDLLCEWQRRWDDGDSPGRVTHRFIPNAGFVYSERRFGFTLRAGFLLTGHGSLNAFLHGRSLSDTPACLCGAEREDWQHFLCACPLYTDLRDLDGLGVQYTDGDWTFSDVTASQERMRTLDRFAGLAFSRRQQLLNAQAAHGLGGFPIQAGRG
>R1_DSe_gag#LINE/R1 408-1790 R1_DEr_gag, R1_DSi_gag and R1_DYa_gag near-identical. [Drosophila sechellia]
MPMESDSSASALSGSSASMKSRRGRRRSHLASKSSAPTQAKLVALASNGVPEPVGVLEEPFSSLEDARAATENAAIDAAPPHAAATAADPTAAPAADHTAASAVFTAAKIVATTATAATAAARAGQAAMMAELSATQRMVRSSFRRLGEVDTEELSYAISRYDELVLALMLRCGELETRLAMPPPPPPSLNLLKNTAANAPQMQQVAPIAAPRTTKVRETWSAVVKCDDPALSGKDIAEKVRTMVAPSLGVRVHEVRELRRGGGAIIRTPSVGELQKVVASKRFAEVGLNVARNAAEKPKVVVYDVDTAIGPEEFMKELHENNFDSEMNLAQFKKSVHLVTKAWSVADGATVNVTLEVDDRAMAKLDVGRVYIKWFSFRCRSQVRTYACHRCVGFDHKVSECRQKDSVCRQCGQQGHTAAKCQNPVDCRNCRHRGQPSGHYMLSSVCPIYGALLARVQARH
>R1_DSe_pol#LINE/R1 1793-4849 R1_DEr_pol, R1_DSi_pol and R1_DYa_pol near-identical. [Drosophila sechellia]
MFSFIQANCGRGRAATIELGVRLRRSESMFALVQEPYLGGDGMDVLPEGMRIFIDRRGKAAILVDHQEAICMPVETLTTDYGVCLVVKGSFGSIFLCAAYCQYDAPLEPYIRYMDAVLLQASRTPAILGLDANAVSPMWLSKLSRHAEGQANYRRGELLSEWMLEARVAALNQSTEVYTFDNYRATSDIDVTIVNEAASMWATYEWRVDEWELSDHNIITVVAEPTTARAVESIAPVPSWNFSNARWRLFKEEMVSRAAELPENFSESPLDQQVSTLRSIVHNVCDIALGRKSIRLPNRRARWWTADLCDARREVRRLRRLLQNGRRHDDDAAIERVLVDLRRASANYKKLIWRAKMDEWKRFVGDHADDPWGRVYKICRGRRKCTEIGCLRVNGEMITDWGDCARVLLRNFFPVAESEAPTAIAEEVPPALEVFEVDACVARLKSRRSPGLDGINGTICKAVWRAIPEHLASLFSRCIRLGYFPAEWKCPRVVSLLKGPDKDKCEPSSYRGICLLPVFGKVLEAIMVNRVREVLPEGCRWQFGFRQGRCVEDAWRHVKSSVCASPAQYVLGTFVDFKGAFDNVEWSAALRRLADLGCREMGLWQSFFSGRRAVIRSSSGTVDVPVTRGCPQGSISGPFIWDILMDVLLQRLQPYCQLSAYADDLLLLVEGNSRAELEEKGAELMSIVEAWGAEVGVTVSTSKTVIMLLKGALRRAPTVRFAGANLPYVRSCRYLGITVSEGMKFLTHIASLRQRMTGVVGALARVLRADWGFSPRARRTIYDGLMAPCVLFGAPVWYDTAEQVAARRRLASCQRLILLGCLSVCRTVSTVALQVLGGAPPLDLAAKFLAVKYKLKRGYPLEENDWLYGEDTTCLSWKQRKTRLEECLLQNWQNRWDDDSEPGRVTHKFIPYVTLAYRDPSFGFSMRTSFLLTGHGSFNAFLQGRALSDTTACACGDPYEDWMHILCACPLYADLRNLDGLGVQRLGENWTFNRILEDQQRIQRLAAFADEVFRRRRGI
>R1_DVi_gag#LINE/R1 269-1648 [Drosophila virilis]
MPPRKKKPAEKGAFENCRMTSEDEVTLSESSSNSEVRRRSKQRLRKATSESAVSSVGAREGSAVPAGAADGSPGAAGASVEERVFAVPHAVSVLDVSEPAVEGPSTSAAALRKRKGTAVEQMKGITGALLQLALKERATGSLICKLVDYTGQYEQLLFALVAQNERLQGRLEAVCGGAGVSHELHVPAGQARAPSVNAARGGPRSAVPSTPEMPRPVETWSLVVRSKAAGKTAKDVVEQVVKEVGPSLGVRIHEVKPLRDGGALIRTPSVAEREKIVENTKFNEVGLEVCVNDKLGPKVVVQGVHSQITPDEFMGDLYEMNLKDKMSLEAFKKGVRMTSKPWAAGGNVAVNIVLEGAVVAMQSLLEIGRCYIKWFSFRVRSFDLVPGCYRCLGFDHKVAECRAKEDVCRRCGQMGHRVAQCSNALNCRNCSFKGKPSGHLMMSLACPIYGAIVARANARH
>R1_DVi_pol#LINE/R1 1638-4724 [Drosophila virilis]
MLDIKMSSRFLQLNCQRSYAAMCDVGAMMCERGSVVALLQEPYATGGCVRGLPACMRVFPDSRANSAVIVNDVSIECTLVSSTDWGVCVSLSGSFGRIFVVSMYCKFGDPLEPYIAYLDEVLLLVSSVPVILGLDANASSPMWFSKVSRHSSGYSNHTRGEMLAEWAVSQDVRVVNEPSEWYTFAGPVGQSDIDVTLVNAVAMSMYAFHWCVLGGLGVSDHNPIEIVVTHTITRNESVGGNRWRTCSVNWSLHGLIVQEAATQVPLNAFNDLNVDEQVVCVNGWITGANDRMFERYRKVNLKHVKWWTNQLSTKRRMVRSLRKRFQRARATNADGAAQLRIEYSRCMNEYKQMLVKVKEDEWRSFLERNKDDPWGRVYKIVRGRGRETDVSSLRVGNVQLTAWRDCMNVLLNEFFPRADHQDSPPSVVRPVDPLLDSELEVAFSRLKSRKSPGMDGFTGEMCKSVWKSIPEYMNAMYAKCLNEGYFPSEWKCARVIVLLKSPDRIRSNPRSFRGISLLPVLGKVLERIMVERLQERMXDQMSDRQFGFRQGRCVEDAWRYVSDSVEASSSTYVLGIFVDFKGAFDYLSWASVLRRLDECGCRELALWKSYFSGRRACAVGRCECVSVNVVRGCPQGSICGPFIWNLMMDPLLVQLEQMCKCCAYADDLLILIEGRSRLEIETNAGMCLRTVYEWGESVGVSLAMDKTVSMLLKGRLAASRPPIVRLNGVNVRYASEVKYLGITFGERMCFTPHIAGLKARLLGLVGQVRRILRSDWGLSRRAVRTIYEGLFVACAAYGSSVWCKAVTTVVGRKKVLACQRVLLLGCLPVCRTVSTEAMQVLLGVAPLDLEIRRRALMYRIKRRLPLLQNDWLAGRDVESLGLSECKRLVKECVLSDWQVRWDTSVNGRVTHRFIREVTFAGSRPDFGFGLSLGFLLTGHGSLNAFLHSRNLYDSPECRCGSAAETWEHVLCECTRYADFRDLRGMGISEVSGGFDVSQSLSTSDRVRRMSEFARAAFSRRRLQLQEGIV
>R1_DWi_gag#LINE/R1 424-1896 [Drosophila willistoni]
MDGSMKRSGSTISVMSASSVVESARSATSCVESAAESMNVTGSDTVDESGAEMTVVVGKREKKARKAKARSARSSPVLEQVAPVAKKPHLDSVSMPAPAAPPVKPAKRKAAAAAASPEAVESPAAGPADMEIPRSGAWRIVAGGSSAILAEIGASGQAIRNAMIGMEPVAASQLSSAIRRLEELATSLTLRNALLEAAASKPAAQPPTTPVAAHIAAYNAAFPAVTARAAAVVPVPGVPVAAPRISKPAETWSAVVTSRDPNVSSKQVAERVMKEVAPTLGVRVHEVRELRSGGAVIRTPSVVEIQRVVANKKFAEVGLNVQQKKAARPSLKVMEVDTKLTPEVFMQQLYENNFKEMTVESFKKAVHMVSKPWVAQEGKRVNVSIEVDDSIASLLEGRERFYIQWFSYRFRWIVRTHVCHRCAGYDHKVAQCGATEATCFRCGQKGHKIWKCENPVDCRNCRFNGRPSGHLMLSLDCPMFAAKEARFAANH
>R1_DWi_pol#LINE/R1 1902-5024 [Drosophila willistoni]
MFSFIQANCGRGRVACIDIGVRMRGFGHSFALLQEPHTDLDGRIIGFPAGMKIFGSRIFEGHRRNSAVIIDDPDAICLPVESLITEAGVCVRVTGKFGSIYLTSLYCHAHAELMGAFQYMDAILLLASSTPVILCLDANAVSPMWFCKRYDSYRGQPNYRRGEQLEDWILASRAGVVNRFSEVYTFDNRRGQSDIDVTIVSEAASAWAAYDWSVDEWEMSDHNIITVVVTPSPDTVESTYAPVPSWKLRNANWRLFDSELVEEIREHLPLEHIRMSPLDSSVSALRLAVQSTCDRVLGRRTSRAAGKVKWWSTELSTKRHEVRRLRRRLQDARRRGNESAQFLATHLRTAVREFKKLILKTKEDHWRNFVGDHRDDPWGHAYKICRGRKRSTELGCLREDGRPVVTWHDCASLLLRNFFPVAAASDDIVIPSGATPVLEAFEIGVCVARLKSRRSPGLDGITGGICKAVWRAIPEHITALLSRCVAEGYFPLEWKCPRVVALLKGPDKERSDPASYRGICLLPVFGKVLEGIMVNRMKEVLPEGNRWQFGFRPGRCVEDAWHHVKASVAASQAVYVLGLFVDFKGAFDNVEWSAVMRRLIDAGCQEASLWRSFFSGRKARMTSRFGEVDVEVTRGCPQGSISGPFIWNTMMDVLLQRLEPLCVFSAYADDLLVLVEGRSRAELERRGKELMSVVGAWGAEVGVSISTSKTAMMLLKGRLAASRSPFVEFAGAGLRYVTQYRYLGITVGERLSFQPHIAGLRGKLAGVSGALSRVLRVDWGLSPRSRRTVYAGLMVPCALFGASVWYSAVKSTMVARRHLCSCQRVMLLGCLPVCRTVSTVALQVLAGAPPLDLVARQLAIRYKVKHSHPLEEGDWLFGLDVANLDRKQMKAMLDERMCCEWQRRWDDDEHGRPTHEFIPDACFVFSRKDFGFGLHAGFLLTGHGSLNAFLYERSLSRTPTCQCGALCEDWQHVLVACPLYTDLRDLDGLGVRREDTRWDFSRVLDTPEQLQMLELFARAAFKRRRRMTQDQPVPGRTGQNW
>R1_Ele1_gag#LINE/R1 268-1839  [Aedes aegypti]
MNTNLNQNQNNSSSAGSSSSREANPFARSGLARSPLRRAEAGGGSSARSASAGNHISSPANASGEVMDGAWLMRAINKSRDGLSAMEVAAQQLDSIIDFASSKSNISKDLKQALFRLRKSMFAAKQNHAEPMATVAAAEPVELKVPKSTQTEPFVFAGSPKSAEANAYNKQSQKRARQPSGEELPGGARKARRILTPKTGRSAGKSDPSQASRKAEKGGPEKAGPSRSDGNRGLRPLRGPQSPQVRADQGGDAPWTTVVRKKKKEKQEVQERRDTRPKKSRRVGAKREKGDAIIIKTEESKYSEVLKAMRSDAKLADLGADVRSVRRTRTGEMILELKRDKERKGAAYKSLAEEVLGEGVEVRALTQSVTLKVMNLDEITNAEELVTALRQQCEIQVPTAAVQLRKGPAGTQVALVHLPVADANKSAKVGKIKVGWSVCSLNIHEQPVICFRCREPGHKSWGCKGPDRTKLCRRCGEEGHKALGCKNPPKCLICSGKSVNNNHPTGGSRCPTFKRAINEKSQCR
>R1_Ele1_gag#LINE/R1 268-1839  [Aedes aegypti]
MNTNLNQNQNNSSSAGSSSSREANPFARSGLARSPLRRAEAGGGSSARSASAGNHISSPANASGEVMDGAWLMRAINKSRDGLSAMEVAAQQLDSIIDFASSKSNISKDLKQALFRLRKSMFAAKQNHAEPMATVAAAEPVELKVPKSTQTEPFVFAGSPKSAEANAYNKQSQKRARQPSGEELPGGARKARRILTPKTGRSAGKSDPSQASRKAEKGGPEKAGPSRSDGNRGLRPLRGPQSPQVRADQGGDAPWTTVVRKKKKEKQEVQERRDTRPKKSRRVGAKREKGDAIIIKTEESKYSEVLKAMRSDAKLADLGADVRSVRRTRTGEMILELKRDKERKGAAYKSLAEEVLGEGVEVRALTQSVTLKVMNLDEITNAEELVTALRQQCEIQVPTAAVQLRKGPAGTQVALVHLPVADANKSAKVGKIKVGWSVCSLNIHEQPVICFRCREPGHKSWGCKGPDRTKLCRRCGEEGHKALGCKNPPKCLICSGKSVNNNHPTGGSRCPTFKRAINEKSQCR
>R1_Ele1_pol#LINE/R1 1833-4808  [Aedes aegypti]
VQVTQLNLNHCDAAQQLLYQAVAEWGTDIAIISDPYRVPAGNGNWVVDGSGKMAAIWTTGKYPVQELVSTTYEGFVIAKVNGVLFCSCYAPPSWSTERFTQMLDCMTTVLTGRRPVVIAGDFNAWAVEWGSRITNQRGQILLEALAVLDVDLANVGTKSTFSRNGAESIIDVTFCSPGLTSSSNWRVDNAYTHSDHLAVRYSIDYNNSRQRVEEAARSRPSPRRWKTSYFNDEVLREALRRERNLLGLSGDELVAVLSRACDATMPRKVHPRNGRPPTYWWTQAIANLRRACLRARRRMQRARTEQEREERRAVFTAAKVALKSEIRASKKACFERLCQSANANPWGDAYRIVMAKTRGAIAPTEQSPQMLEGIIEGLFPRHNPSPWPPFVGQPGIGAGDEDRVTDEELVGIAKSLSMGKAPGPDGVPNLALKVAILEAPGMFRSAMQICLDEGVFPDAWKRQSLVLLPKAGKPPGDPSAYRPICLIDTAGKVLEKIILNRLLRYTESVNGLSSNQFGFRKGKSTVDAILTVKKTAEIALQRKRRGIRYCAVVTLDVRNAFNSASWAAIADALLRLGIPEYLYKILGSYFQNRVLVYDTEVGRKCFHITSGVPQGSILGPVLWNVMYDEVLRLKFPAGVVIVGFADDITLEVYGESIEEVELTAAHSIAIVEEWMSSRKLELAHHKTEAVVVNNRKSVQQAVISVGDCTITSKRSVKHLGVMIDDKLTFGSHVDYACKRASTAIVALSRMMSNSSAVYASKRKLLASVASSILRYGGPAWGTALSTKSYRSKLESTYRLMCLRVASAYRTVSHDALCVITGMVPIGILIMEDIECFEMRGTRGIRRTARLASMVKWQRAWDSSTKGVWTHRLIPRLDIWVNRRHGELTFHLTQVLSGHGCFRQYLHRFGHAGSPECPVCAGLEETAEHVLFVCPRFRTMRDRMLATCGRDTTPDNLVQRMCEDEFGWNAVSSAITHIVSELQRRWRVDSRSG
>R1_Ele1_pol#LINE/R1 1833-4808  [Aedes aegypti]
VQVTQLNLNHCDAAQQLLYQAVAEWGTDIAIISDPYRVPAGNGNWVVDGSGKMAAIWTTGKYPVQELVSTTYEGFVIAKVNGVLFCSCYAPPSWSTERFTQMLDCMTTVLTGRRPVVIAGDFNAWAVEWGSRITNQRGQILLEALAVLDVDLANVGTKSTFSRNGAESIIDVTFCSPGLTSSSNWRVDNAYTHSDHLAVRYSIDYNNSRQRVEEAARSRPSPRRWKTSYFNDEVLREALRRERNLLGLSGDELVAVLSRACDATMPRKVHPRNGRPPTYWWTQAIANLRRACLRARRRMQRARTEQEREERRAVFTAAKVALKSEIRASKKACFERLCQSANANPWGDAYRIVMAKTRGAIAPTEQSPQMLEGIIEGLFPRHNPSPWPPFVGQPGIGAGDEDRVTDEELVGIAKSLSMGKAPGPDGVPNLALKVAILEAPGMFRSAMQICLDEGVFPDAWKRQSLVLLPKAGKPPGDPSAYRPICLIDTAGKVLEKIILNRLLRYTESVNGLSSNQFGFRKGKSTVDAILTVKKTAEIALQRKRRGIRYCAVVTLDVRNAFNSASWAAIADALLRLGIPEYLYKILGSYFQNRVLVYDTEVGRKCFHITSGVPQGSILGPVLWNVMYDEVLRLKFPAGVVIVGFADDITLEVYGESIEEVELTAAHSIAIVEEWMSSRKLELAHHKTEAVVVNNRKSVQQAVISVGDCTITSKRSVKHLGVMIDDKLTFGSHVDYACKRASTAIVALSRMMSNSSAVYASKRKLLASVASSILRYGGPAWGTALSTKSYRSKLESTYRLMCLRVASAYRTVSHDALCVITGMVPIGILIMEDIECFEMRGTRGIRRTARLASMVKWQRAWDSSTKGVWTHRLIPRLDIWVNRRHGELTFHLTQVLSGHGCFRQYLHRFGHAGSPECPVCAGLEETAEHVLFVCPRFRTMRDRMLATCGRDTTPDNLVQRMCEDEFGWNAVSSAITHIVSELQRRWRVDSRSG
>R1_Ele4_gag#LINE/R1 1170-2705  [Aedes aegypti]
MINQNKQLAECEGEASGPISNRLRFPPRKEATNFIENSVGKSLDTVTTAGTGRSSATCVVTDGPGLIEAMDRNREYLPKMQVAAEQLDVIIEYVKSKTNISKDLKTSLLKLRQSVLAAKQDYEKAKEQLGKVEGQKDTRSCQTEVFSFTGNANISDDIIRYAMRKREASGDEYVAKRRMVAKGKVTYAAVLQSGKAGTSQAPRSRGHGNKGEANTNPKAKKAKKKEPRVNRNQAVHPQEPRAQGNSNPWIRVGNKKKQRKPKTEPKESAKPKTAKRRNLGEALVIKTEEAKYAEVLKAMRSTEKLSPLGADVRSIRRTRIGEMILVLKKDAKEKGAVYKQLAQEVLGDEVDVRSLTAEATLQCKNLDEVTDAAEVSAALKEQCDIDVASKAIHLRKGPQGTQVAAIRLPVAEANKAKNLGILKVGWSVCRLSIQQPPEVCFKCFGKGHKSWNCNGPDRSKMCRKCGAEGHRASDCKQIAKCLICVDRADNGHLTGGPKCPGTSGVSKQPKRK
>R1_Ele4_gag#LINE/R1 1170-2705  [Aedes aegypti]
MINQNKQLAECEGEASGPISNRLRFPPRKEATNFIENSVGKSLDTVTTAGTGRSSATCVVTDGPGLIEAMDRNREYLPKMQVAAEQLDVIIEYVKSKTNISKDLKTSLLKLRQSVLAAKQDYEKAKEQLGKVEGQKDTRSCQTEVFSFTGNANISDDIIRYAMRKREASGDEYVAKRRMVAKGKVTYAAVLQSGKAGTSQAPRSRGHGNKGEANTNPKAKKAKKKEPRVNRNQAVHPQEPRAQGNSNPWIRVGNKKKQRKPKTEPKESAKPKTAKRRNLGEALVIKTEEAKYAEVLKAMRSTEKLSPLGADVRSIRRTRIGEMILVLKKDAKEKGAVYKQLAQEVLGDEVDVRSLTAEATLQCKNLDEVTDAAEVSAALKEQCDIDVASKAIHLRKGPQGTQVAAIRLPVAEANKAKNLGILKVGWSVCRLSIQQPPEVCFKCFGKGHKSWNCNGPDRSKMCRKCGAEGHRASDCKQIAKCLICVDRADNGHLTGGPKCPGTSGVSKQPKRK
>R1_Ele4_pol#LINE/R1 2663-5668  [Aedes aegypti]
MSGHKRSIKAAKTEVTQLNLNHCDAAQQLLWQSVSETKTDVVLLSDPYRIPANNGNWVADRSQQLAAIGTTGRYPIQEVVSSSNDGFAIAKINGVFYCSCYAPPRWSIEEFSHMVDRMMAELANRQPVVIAGDFNAWAVEWGSRCTNQRGQLLLESLAALNVELANVGTVSTFRRNGAESIIDVTFCSPNLLGTMNWRVDDGYTHSDHQSIRYSIIPGGQKAARCNSTQARGWKTARFDGEVFTEALRRERNTLDLNGEELVAMISRACDASMPRKAPPRENRPPVYWWCESIANLRAICLRARRRMQRARTEAQREERGAAFREAKLALKKEIKSRKRACFESLCESANSSPWGDAYRVVMAKTKGAIAPQEKSPELLRSIIDVLFPHHPISPWPPAPYAADEGEEVARVTNEELAEVVKSFASNKAPGPDGIPNVALKAAVNTDPDMFRTTMQRCIDQGIFPDVWKRQKLVLLPKAGKPPGDPSAYRPICLLDTTGKLLERLILNRLVPYTESADGLSNNQFGFRKGKSTLDAIQSVVQTAEVAIEHKRSGIRYCAVVTLDVKNAFNSASWEAIAHALHRLKVPVQLCKLLESYFDGRILLYDTEEGQKSVRITAGVPQGSILGPLLWNAMYDDVLRLPLPTGVKIVGFADDITLVVYGESMEEVELTAAHSISLVEEWMKSRKLGLARHKTEVVVVNNRKSEQRALISVGDCTIESKRSLRHLGVMIDDKLSFASHVEYACKRASTAIAALSRMMSNSSAVIASKRKLLASVALSILRYGGPIWSKALRTNRNLKRLESTYRIMCLRVASAYRTVSKEAVCIIAGMTPIGLIIKEDVQCFNQRGTRGVRDTCKEETLRSWQQEWDNSTKGRWTHRLIPNVSDWYGRSHGEVNFHLTQFLSGHGCYRQYLHRFGHSESPACPNCAGVEETAEHVVFDCPRFIVVRGRMLTTCGGDTSPDNIIERMCADAECWNAVTTAVTHIMLELQRLWRADQELAAED
>R1_Ele4_pol#LINE/R1 2663-5668  [Aedes aegypti]
MSGHKRSIKAAKTEVTQLNLNHCDAAQQLLWQSVSETKTDVVLLSDPYRIPANNGNWVADRSQQLAAIGTTGRYPIQEVVSSSNDGFAIAKINGVFYCSCYAPPRWSIEEFSHMVDRMMAELANRQPVVIAGDFNAWAVEWGSRCTNQRGQLLLESLAALNVELANVGTVSTFRRNGAESIIDVTFCSPNLLGTMNWRVDDGYTHSDHQSIRYSIIPGGQKAARCNSTQARGWKTARFDGEVFTEALRRERNTLDLNGEELVAMISRACDASMPRKAPPRENRPPVYWWCESIANLRAICLRARRRMQRARTEAQREERGAAFREAKLALKKEIKSRKRACFESLCESANSSPWGDAYRVVMAKTKGAIAPQEKSPELLRSIIDVLFPHHPISPWPPAPYAADEGEEVARVTNEELAEVVKSFASNKAPGPDGIPNVALKAAVNTDPDMFRTTMQRCIDQGIFPDVWKRQKLVLLPKAGKPPGDPSAYRPICLLDTTGKLLERLILNRLVPYTESADGLSNNQFGFRKGKSTLDAIQSVVQTAEVAIEHKRSGIRYCAVVTLDVKNAFNSASWEAIAHALHRLKVPVQLCKLLESYFDGRILLYDTEEGQKSVRITAGVPQGSILGPLLWNAMYDDVLRLPLPTGVKIVGFADDITLVVYGESMEEVELTAAHSISLVEEWMKSRKLGLARHKTEVVVVNNRKSEQRALISVGDCTIESKRSLRHLGVMIDDKLSFASHVEYACKRASTAIAALSRMMSNSSAVIASKRKLLASVALSILRYGGPIWSKALRTNRNLKRLESTYRIMCLRVASAYRTVSKEAVCIIAGMTPIGLIIKEDVQCFNQRGTRGVRDTCKEETLRSWQQEWDNSTKGRWTHRLIPNVSDWYGRSHGEVNFHLTQFLSGHGCYRQYLHRFGHSESPACPNCAGVEETAEHVVFDCPRFIVVRGRMLTTCGGDTSPDNIIERMCADAECWNAVTTAVTHIMLELQRLWRADQELAAED
>R1_Ele7_pol#LINE/R1 813-3372 via tfasty with WaldoAg2_pol, 4 frameshifts and 1 stopcodon. [Aedes aegypti]
METTIKRVASNAQQLLWQSTTENXCDVAIIAEPYQVPPDNGNWVADRTGTAAIHVMGRFPIQEVVDNSGEGFVIAKINGVDVCSCYAPPRWTVEQFSQMVDQLTDKLIGRKPILIAGDFNAWAVVWGSRVTNARGYILQEALAKLDVRLCNEGSVSTFRRNGRESIIDVTFCSPALSANMNxEFVRGTPSDHLAIRYRIGQRNPAPTMGRITSERKWKTKAFNEELFVEALRQDGDNEDIDATELTQDGNACDATMPRKLEPRNKRRPAYWWNDTLSTLRTACLRARRRAQRAGTEMERRERRTAFREARTALKREIKLSKSNCYKELCRDADTNPWGNAYRVVMAKIKGPSTPAEMCPDKLKLIVEGLFPKHDPTSWPPTPYGEDAEAIAEERQVSNDELVEAAKRLKSKKAPGPDGIPNVALKAAILAYPDMFRKVLQKCLDEGNFPGIWKIQKLVLLPKPGKPLGDPASFRPICLLDTLGKLLERIILNRLTKCTESERGLSQMQFGFRKGLSTVDAIRAVLECAEKASKQKRRGDRYCAVVTIDVKNAFNSASWEVPDYLCKILKSYFQSRILVYETNEGQKSMQVTAGVPQGSILGPTLWNGMYDGVLTLRLPRKVKIVGFADDVSLTVMGETLEEVEMSVMETIDAIEGWMSGVKLQIAHHKTEVLLVSNCKAVQQMEVNVGRYVIAPKRVLKHLGVMIDDRLNFNSHVDYACEKSEKAMNAIGRIMPNLGGPSSSTRRLLANVSSSILRYGVPAWGKALETKRNREKLNRAFRLMAVRVASAYRTISSDAVCVIAGMIPCITLAEDIECYQRRDVRNVRKMARVGSMARWQHEWDCAEKGRWTHRL
>R1_Ele7_pol#LINE/R1 813-3372 via tfasty with WaldoAg2_pol, 4 frameshifts and 1 stopcodon. [Aedes aegypti]
METTIKRVASNAQQLLWQSTTENXCDVAIIAEPYQVPPDNGNWVADRTGTAAIHVMGRFPIQEVVDNSGEGFVIAKINGVDVCSCYAPPRWTVEQFSQMVDQLTDKLIGRKPILIAGDFNAWAVVWGSRVTNARGYILQEALAKLDVRLCNEGSVSTFRRNGRESIIDVTFCSPALSANMNxEFVRGTPSDHLAIRYRIGQRNPAPTMGRITSERKWKTKAFNEELFVEALRQDGDNEDIDATELTQDGNACDATMPRKLEPRNKRRPAYWWNDTLSTLRTACLRARRRAQRAGTEMERRERRTAFREARTALKREIKLSKSNCYKELCRDADTNPWGNAYRVVMAKIKGPSTPAEMCPDKLKLIVEGLFPKHDPTSWPPTPYGEDAEAIAEERQVSNDELVEAAKRLKSKKAPGPDGIPNVALKAAILAYPDMFRKVLQKCLDEGNFPGIWKIQKLVLLPKPGKPLGDPASFRPICLLDTLGKLLERIILNRLTKCTESERGLSQMQFGFRKGLSTVDAIRAVLECAEKASKQKRRGDRYCAVVTIDVKNAFNSASWEVPDYLCKILKSYFQSRILVYETNEGQKSMQVTAGVPQGSILGPTLWNGMYDGVLTLRLPRKVKIVGFADDVSLTVMGETLEEVEMSVMETIDAIEGWMSGVKLQIAHHKTEVLLVSNCKAVQQMEVNVGRYVIAPKRVLKHLGVMIDDRLNFNSHVDYACEKSEKAMNAIGRIMPNLGGPSSSTRRLLANVSSSILRYGVPAWGKALETKRNREKLNRAFRLMAVRVASAYRTISSDAVCVIAGMIPCITLAEDIECYQRRDVRNVRKMARVGSMARWQHEWDCAEKGRWTHRL
>R1_Ele8_gag#LINE/R1 16-1428  [Aedes aegypti]
MENISDNTVMEVEAAEGENANAFARSGKLQRSPVAQQETPASSSRALQGENSRLQAGLGFQSPSFTPKSSNSICQEGLTGNSKLMEAKKKVNELYEYMKDRTNVHHKIRNLVTSIKSAINAAENEQKALKMRAEAAEKALQNAKEQTVADTPKTPKAHANKPSKKRDRDSPGEEAGSKKQKNEQGNYLLNGAENDEEWQTVRSQKNRGKKHGEGREKKKEGTKKXTSRPRREWSKGDAILVKANDQTTYAAILRKVREDPKLKDLGENVVRTRRTQRGEMLFELKNDPVIKSSAYQELIAESLANEASVKALTQEAVVECRYLDEITSNDDLQQELRSQCDIGDVAMTIRLSKSYDGTQLATIRLPVAAANKLVEKEKVKIGWSVCPLRLVSRAERPPMRCFKCMDFGHQAAICNGPDRSELCRKCGEKGHFGKDCTKRPKCLLCKPEEGNAHVTGGFKCPAYKKAIASRQ
>R1_Ele8_pol#LINE/R1 1434-4449 via tfasty with R1_Ele7_pol, 1 frameshift. [Aedes aegypti]
VEVTQINLNHCDTAQQLLWQSTTEARCDVAIIAEPYRVPLDNVNWVADSTGIAAIQVMGRFPIQEVVSSTKEGFVIAKVNGVYVGSCYAPPRWTLDEFRRMLEELTDELVGRKPVLIGGDFNAWAVEWGSRVTNARGYSLLEALTKLDLQLCNEGTVSTFRKNGRASIIDLTWCSPSLAGNMNWRVSEEYTHSDHQAIRYTIGRRDCAATPRTTTIVQQWKTKAFDKDLFVEALRVDSDIPDLDAVELTRAMVRACDITMPRKRRPSNNRRPVYWWNEALCTLRAACLKARRRYQRARHEEVREERRIVFQQARTAFKREIKLSKSNCFKEPWGDAYRVIMAKIKGPSTPAETCADKLRVIVEGLFPKHDPTMWPATPYGNEEVGNAEARQISNEELIAAVKALKLNKAPGPDGIPNVALKAAVLAYPDMVRKVMQKCLDEGQFPEIWKIQKLVLLPKPGKPPGDPGSYRPICLLDTLGKLLERVILSRVMKCTESENGLSERQFGFRKGRSTVDAIRTVLERAEKALKQKRRGDRYCAVVTIDVKNAFNSASWEAIATALHRMRVPDYLCQILKSYFQNRVLRYETDAGPKELRITAGVPQGSILGPTLWNAMYDGVLSLELPKGVEIVGFADDVVLTVIGETQEEVEMLATEAIGLVEDWMEGVKLKIAHHKTEVLLVSNCKAVMHGEITVGGHAIASQRKLKHLGVMLDDRLNFNSHVDYACEKAAKASNALTRLMPNIGGPRSSKRRLLAVVSTSLLRYGAPAWGAALQTKRNRDKLNSTFRLITMRVVSAYRTISSEAACVIAGMIPICIILSEDIDCYQRRETRQARKLARIRSLAKWQQEWDASEKGRWTHRLIPNLSAWVNREHGEVNFHLTQFLSGHGCFKQYLHRFGHASSPFCPECMEIEETPEHVVFDCPRFNIERNTVAAAFGEYFSVEGVVHGMISDPDLWNMMTNMVVQIMSGLQRNWREEQRNETQRAALDVGRRGADEPEANLPPELSD
>R1_Ele9_gag#LINE/R1 694-2097  [Aedes aegypti]
MENINNIGEGAANPFARSGLVRSPTLQTQQAHQQHEGEQEQINVQQQQQFSMWSKVPKLPKVVTAKKFVEELHEYVDKRSNVHKDIKLLVTKIQGALGAAVKEWKTLEARADTAEKELAVTKSALEAMRASASRKVETSTVTGEAPVSNKNVSSVQTTPFFTPKRARASPEDVRPGGPKKHKDTPGTGVYPTTEEATEENSQTPWQVVGKKKEKTSKKNPSENRVSIKGRNKGEALILKASDDSYMEVLRAMRSNPDLKELGEDVQKVRRTLNGEMILELRKESKASSSFYKELAEKAMGDKVEVRAVCPEATLECKNMDEISTEEDLRLAMQQQCALGNVPMSIRIRKGPRGMQVASVRLPVDAAKKALKTGKIKVGWSVCPISVSERYQLVACFKCLGFGHIARFCNGPDRSKLCRRCGEEGHKAQDCQKSPKCLICANNGDNKHVTGGPRCPAFKQASANMSQWR
>R1_Ele9_pol#LINE/R1 2052-5054 via tfasty with R1_Ele4_pol, 1 stopcodon. [Aedes aegypti]
MSGLxTSVCKHVTVEIAQINLNHCEVAQHLLGQSVAEMKCDVAIISEPYRIPPTDGNWVADTSKTAAIWTVGRYPFQEVVECAEEGFVIAKVDGVYICSCYAPPRWPLEEFNRMLDRLTEELTDRRPFVIAGDFNAWAIEWGSRLTNARGCSLLEALAKLDVHLANEGTISTFRREGRESIIDLTFCSPGLARHMNWRVCEEYTGSDHQIIRYRIGGRFQPVYCESQTDVRRWKMADFKKDVFVEALRLEHITLNLSADELTAALTRACDVTMPRVGKPANGRRPAYWWNSTIADLRGSCLRARRRMQRACNNAEREERRLIYRAARSALKSEIRLSKKACLQELCDKANANPWGDAYRVAMARLKGPTMPPEKCPERMKVIIDGLFPQHDATTWPPTPYGVQDGDYEESRVTNEELIGVAKALDTKKAPGPDGIPNLALKTAILENPDMFRTTLQNCIDDGSFPDSWKRQKLVLLPKPGKPLGESSAYRPICLLDTSSKLLERIILNRLTKHAENENGLSNMQFGFRKGRSTVDAIQTVVETMEAAQKQKRRGNRYCAVITLDVKNAFNCASWKAIADSLHSMRIPEYICRILKSYFQNRLLIYETDQGVKSIQITAGVPQGSILGPTLWNIMYDGVLKLNLPRGVKIVGFADDVVLLVVGESREEVEVLATETIETVEDWMRDKKLAIAHHKTEVVMISNRKVVQQAKITVGDCIIDSKREVKHLGVMIDDRLNFNKHIDYVCEKAAKAIGALSRIMANDSAIKSSKKRLLASVTTSIIRYAGPAWVTALKTERNRSRLSSTYRLMAMRVSSSYRTISSEAVCVIAGMIPISLLLEEDRECYTDRHTRGVRERERADTIRKWQHQWDQATTGRWTHRLIPSLSMWIRRPYGEVNFHLTQFLSGHGCFRQYLHRFGHTSSASCPECSNTEETAEHIFFACPRFGLEREEMKAILGEDVNVDNVIQRMCNDADKWNAVNRIVTQIMSALQRKWRVEQRHEA
>R1_Px_gag#LINE/R1 named SART1Px1 by Kojima and Fugiwara gi|22004000|dbj|BAC06449.1| gag-like protein (22004003, 22004006, and 22004009 over 99% identical, 22004016 and 22004019 close, 22004022 over 90% similar) [Papilio xuthus]
MMASLKTNLPQEGTTSSAGGESLPEATLASGCPSYSGGGKNCFDCTTTLALNMDTDARDVEVTGSGMEEEMELDTELMLSEESTSMSESSRRASPLPRKRRGRPPTTGHYVGLAKAKLALIEAEREEERRRAEAEVVAASRVARARSQAHRLSETATEDEEFQAAGSLGQVIEENIEVIKKMATTSKNLKGGYVRALKDAAEEITKMTKALQRRTTSEETKGLQADNARLRAEVAQLRKEVAEMKKHLLAPNERSEVAVEARRQPEPQPQRQPNDSEELVRTILCQVGNMINARFEALQDRLLPEKRLRPQLAADNRPVSESRGAPEVLKAAGKAXGKTSGKVPNKAPSKPPKEKTTAEPQAQPQPTAAVEPADHQPKELPWTQWSKKGLRKRRRTDRGCTQTPKERKRQEHHQTGHPKTAAVVVSITPEAIAKGLTYDAVIAEAKAKIKLQDVGITTGVRFRVCATGARRFEVLGTNNGPQADALAERLTQVFDTDLVRVSRPTKTTEVKISGLDDSSTIEEVLAAVAEIGGCPRESLKSSGVVRDRFGVGHAWVECAVPTARRVAAAGRLTISWVSANVTLLEPRPMRCYRCLQKGHVRAQCNAEEDRSKLCFRCGVEGHKFKGCMAKPHCTICAAAQKPADHKLGGRGCSAPAPKISRGKRTAQPQPAQQAPEEAAMETEEVNIRNGPTPTTSQC
>R1_Px_pol#LINE/R1 named SART1Px1 by Kojima and Fugiwara  gi|22004007|dbj|BAC06454.1| reverse transcriptase (22004001, 22004007, and 22004010 over 98% identical, 22004017, 22004020 and 22004023 close) [Papilio xuthus]
MALHLLQANVNHCARAQDLLIQSMAEWSTQIAVVSEPYYVPNRDDWVGDEDSLVALIVPRSARSPSIDGVQKGRGYVGATIGGTLVVGVYCAPSMNLVEFEDLLERVGTLVGRNLPHSVLVMGDFNAKSSAWGSTSTNARGAVLEEWALTSGLCLLNRGSRPTCVRTQGSSIVDLTFACPATARRMYGWEVVEGVETLSDHRYIRFXISTTPTVPAHQGPESLQRDTPRWVVKRLNTDLLIEAAQVETWSPADSSPDLANRAAELRASMTRVCDASMPRQGPPPRKRQVYWWSADIAAMRVACVAARRQYQRQRRRRQRDEIAEASLHDIYKAAKHALSRAICEAKDRAREELIETLNLDPWGCPYRMVRGKLRTRASPLTQSLQPQLVRGVVGSLFPNGVAHTPPFRIPTIRNENPDSVDEEDIPPITPGEFGAGIHRLRAKRTAPGPDGIPGRAWVLAADVYEERVVGLMSDCLAHGRFPLLWKNGNLVLLKKEGRPADSPAAYRPIILLDEVAKLFERIIANRLIKHMTTVGPDLDEKQFGFRAGRSTIHTIMRVKKITEEAIAQDNVVLAVSLDIANAFNTLPWSCIIEALRYHQVPKYLRRIITDYLSTRSVSYRSRDEWCRHEVTCGVPQGSVLGPLLWNVGYDWVLRGANIQGVDVTCYADDTLVTARGSTYRDCAILATVGVAQVVGRIRALGLEVALQKSEALYFHGPRSRPPPGAHIVVGGVNINIQSHIRYLGLMLDGRWTFEGHFRQLGPKLMRTAAALGSLLPNVGGPKAACRRLFTGVVQSMALYGAPVWSGALNSRTTEILHRPQRTMAIRMIRGYRTVSYDAACTLAGSLPWVLEAEILAAIHTWRELKITTDGAPPLRVEVEAFRKERREEAVSKWQRRLRQTRAGARTIGAICPVFMAWLRRRHGAVTFRLAQVLSGHGCFGSYLRRIGREPSAVCHHCDDCPEDTAQHTLAECPAWTEQRRDLVAAVGDDLSLPATVRSMVESDGAWRAVQTYCEAVMTIKEEAERAREATSQDAIRSRRTGGRRRAYARTIPP
>R1_SC_pol#LINE/R1 1-3015 Nearly complete fragment. [Sciaridae]
LRGEVRGLPSSFRVVTSRIVNDGIGISAIVINDPEADVLVIEDCTDEYGVCVLIKGATCSMYVVSVYCRFGTALGPYLQYMENVRVKCGNTYMIMGMDANAVSPLWFSKGENLGRGRLNEANGLLLEEWILEGRMIVINEPSEWYTFSGPNGSSDIDVTLVNEAGGRFGYEWSVQPEWGVSDHNLIRIRVSLDGLVADASPSPQSARWQTRDTDWGEYMGDVKAKADVFGLAQYENVSVDEKVDLLTEWIYGANDWNMRRHTAVRTFQNEWWSVELAEKRSELRRRRHAFQRIRNAGAASLADRLQAFRDCKIEYKRMLCEAKLRCWQEFVASESNENPWGRVFKLCRGRRKPVDVCSVKVDGVYTDTWEGSVNAMMNVFFPASIDDASEIDRLKAIARPLPPDLEMDEVSDSVRRCKVRKSPGPDGIVGEMVRAVWGAIPEYMFCLYKQCLLESYFPQKWKIASLVILLKLLDRIRSDPGSYRPICLLDNLGKVLEGIMVKRLDQKLMDVEVSPYQFAFTYGKSTEDAWRCVQRHVECSEMKYVIGLNIDFQGAFDNLGWLSMLLKLDEAQSNEFGLWMSYFGGRKVYYVGKTGIVRKDVTRGCPQGSKSGPAMWKLVMNELLLALVAAGFFIVAFADDGTIVIGANSRSALEELGTRCLQLCHEWGKRVCVPVSAGKTTCILMKGHLSANRPPCIRLNGTSISYKSEVKHLGIFVAERMNFRPHFVYLRGKILGLVGCLRRVMRKSWGLGRRATCILYKGLFVACMSYGASVWFRTLRFSYASILLNRCQRLVLYASLNVCRTVSTERMQVLHGELPWDLEATRRGLLSEFRKGITPVDGDPITDEEMLGLSGSQFKELLMERLLDVWQGRWDVSEKGRLTHEFIPSVRFVRENEWMAFGLCLGYVLTGHGSMNGFLHKRGLSNTPVCMCGAPNEDVKHLLGECPLYEDLRDLNGCGLLIRNGSLDVSGALSEIGAFEKLNQFAVSLFGRRSRLMRGMRIRE
>R1_gag#LINE/R1 467-1852 [Bombyx mori]
FGTMSEEERELFSPRVSLARSPPRGPTAPLPAPMPPPAPRGVRAGAAMSAKGRRTGLHIPVASGLSSSAPVTPVDPVAGVPSFPIPVASGAPTGPLDVAAQGRLELLERANRAVRGIMSVATAASKLNKSEVNLISELGRDILAVVGALGIQLSDKELVVERLRSAEASARRDSVAPSMAAGAAAGSGTGPATFATVLRTGPGGVPRSIGASQGPSLAFYPSEGNAELKTAEDTKKEVKKAIDPKSMAIGIQSVRKVGNAGVVVQTTSPGAAVKLRNAAPPSLRVTEPRRRQPLVAVNGVEGDPSFEEVIECLASQNLDPEEWPLTRVRAELTGAFKKGRRQSNNTTVVFNASPRIRDALVKIGRVYVGWVACEVTDFVRVTCCNKCQQYGHPEKFCRAKEATCGRCGEDGHRMEACKAASACCATCRRFRREAMHPTASRDCPARRHAEERFLNQVEYGY
>R1_pol#LINE/R1 1830-4985 [Bombyx mori]
IRSSMDIRPRLRIGQINLGGAEDATRELPSIARDLGLDIVLVQEQYSMVGFLAQCGAHPKAGVYIRNRVLPCAVLHHLSSTHITVVHIGGWDLYMVSAYFQYSDPIDPYLHRLGNILDRLRGARVVICADTNAHSPLWHSLPRHYVGRGQEVADRRAKMEDFIGARRLVVHNADGHLPTFSTANGESYVDVTLSTRGVRVSEWRVTNESSSDHRLIVFGVGGGTTGERDEDEEARSDLRPGEPCALRRYRDRGVDWDLFRSRIHERMGSLDLEEPVAALCEKFTGVITRTAEECLGSLKADRTDRGYEWWTPVLDKLRVAQGRARRRWQKARRTGGEEEEQSGRVFRDRRREYRRAMHDAETAFYREIAEGGNRDPWGLAYRTASGRRRAPTNVVNGVEYAGRCSDDVSGAMRTLMWALCPDDYMSRDTPYHARVRIMAALPPSGRDADPLSKDSLRAIIGSLKNTAPGIDGLTARIIKKALPAAEAEFVAVYARCVVEGTFPPVWKDGRLLVLPKGNGRPLTDPKAYRPVTLLPVLGKILEKVLLQCAPGLTHSISPRQHGFSPGRSTVTALRTLLDVSRASEQRYVMAIFLDISGAFDNAWWPMIMVKAKRNCPPNIYRMLTDYFRGRRIAVVAGECAEWKVSTMGCPQGSVLGPTLWNVLMDDLLALPQGIEGTEMVAYADDVTVLVRGDSRAQLERRAHAVLGLAEGWASRNKLDFAPAKSRCIMLRGKFQRPPIVRYGSHVIRFENQVTVLGVSSTIASLSRHAAAIGERASRCFGKMSRVSASAWGLRYRALRVLYMGTYVTTLTYAAAVWYLRAAVHVVRSVLLRTQRPSLTLLTKAYRSCSTAALPVLAGVLPADLEVTRAGRRMRECEGLARELAAERRRRIDGDVLVVWQNRWVSEGKGRELYKFFPDVADRKKATWMEPDYQTSQILTGHGIFNKRLADMRLREGHACDCGAVEEDRDHVLWECPLYDEIRGRMLDGISRSEVGPVYHADLVRDEKNFRLLREFAIHGTRRALRANHEDCLATKNVGDVSSPRTGRMLVE
>R6Ag1_gag#LINE/R1 gi|28569869|dbj|BAC57909.1| gag-like protein [Anopheles genus]
MMDFLDEVMSEFRRYRAVNRMQQVLDRQTQTSFDGNDGFGPQTRKGRRPVADDQQPGPSGLQRLQQQQQQPSRLTPVREAVENIPSPRNGPNINEGSINKRKKKKSKKKQNKPRKRPEALLISDCTSEELAKLLKEMKQSDALKSVGETISKVRRAQNGGMLLELKQGSSASAIAPKVKEAVKGKASVRTLAPSKMIEIMHLDEITTPEEVAESVKAQLNIEIEIDRIKMKKGRAAGTQWARINVSLPDFQSFLNLGKLKVGWSICHIREVMEEQKCYKCWKVGHTSYHCREPDRSNLCWKCGLSGHKKQACTNSVKCLDCGTRSQNLHATGSYMCPRRRTIRS
>R6Ag1_pol#LINE/R1 gi|28569870|dbj|BAC57910.1| reverse transcriptase [Anopheles genus]
MVRLLQHNQNHSYAAFQLMWQTIREESADIVLIADPYLATTNVKVLRNDDNTAAVVVNADLPVKVVSKALKGLMVVDIGDMRVVSVYAPPRFSMEEFQIMLDNTVMAVTGIHKFVIGGDFNAWSASWNNQLGERGETQKRRGELVLSTFAQIDAILLNDGSTPTYVGPGRTSVVDLTFASRTVARSFKWEVLSSYMNSDHRAIRIDLETQSVRNLSRPITGWSIKYFSKDIFEVMMQAAVDTEVTTSEDLMRILVTACNATMTKRKRYTPNKSAFWWTLEIEALRKECKHRDRLAQRAFHTDLYSTFRDEFKVARNALKRLIKHTRQRKWKEFLGTANNASFGIVYHTFKKVAEGSIGPRTMTLDEFREVVSELFPTHPNTVWPDYRIDQPREFERITNDEILAVARRLPNKKAPGPDGIPNEALKVGMLTATDAFCRVYQGCLENAKFPDEWKRQRLVLIPKPNKPPGEPGSVRPICLLDGAGKGLERIIVQRLNAHIEEVNGLSDDQFGFRSRRSTVDAIQRVVDIVSVARSRNRYSGRYCAVVTLDVTNAFNSASWLAIANALQRINTPKYLYDIIGDYFRNRVLMYDTTDGPAEIAVTSGVPQGSVLGPTLWNLMYDGVLRVAMVEGARIIGYADDIVLLVEGNCVDDIEILVSSQIRIIDRWMTDNGLKIAPTKTEFIMVSSHQRIQHGAIRVGDHVVHSSRTLKYLGMVLDDRLEYTSHIRYAVERATKLWTTLVRMMPNKAGPSSNVRRVIALTVVAKVRYASPIWCHTLRFANRRQWLRRFYRPVVQRVISSFRTTSHDAVCVLAGMIPLHLLLDEDSRTFHRRRAENIAGSVARNMERVTTMERWQREWDESVHGRWTYRLIPDVNRWISRRFGGVDFFLSQFLSSHGFYAYQLHRMQLTGSPLCDACEEPEDAEHTIFHCVRHRELIIRLQHQVDEELTPENIIEVMSANRYNWSMVHQAVRTIMIRQQHRRHVIERGERRALLANIQLALQSSDSDDE
>R6Ag2_gag#LINE/R1 gi|28569872|dbj|BAC57911.1| gag-like protein [Anopheles gambiae]
MADGKGKTAVRRERRKRKKQREAEQAASLAANTPPSASQPKQKPAPAFNPRAGRMPNAIELESIGRFKHAEMMPILRETVKKEDVQRIRTNFKGHLLLELAPMSHQETMTLWREVAAALDGKAKCRPRTPSMRVNCTNIPPDTSSEEISSEMSAALGVEIFSDQITTVKTHYGTLVAFFDCPAITVTDQALARQYTVGFSKCCRLRLLERRRQCYRCYEYGHTAARCHGKDRSSKCHRCAEDKHEGPCTRERKCLGCEGPDAIGHSLGQRSCRYFGKITPQPSHD
>R6Ag2_pol#LINE/R1 gi|28569873|dbj|BAC57912.1| reverse transcriptase [Anopheles gambiae]
MIRVFQQNLNHDQTAQDLLLQSARAEGCDILIISDPYWVPNNNSNWVTDTTGRVAVVSVGDYPFQRIIDNQREDFVVVEMRGIVFCSVYLPPVGSDLTVEEYKRKWTEIVSMLPRNRDTVIGGYVNVWSGAWGMERRPNDGERVSRGGVVMDAAAALGLVLLNQGNQSTWIGANGRNSIVDVSFCSPSLVGDNNWRVCDETPSDHNTIKFVVGRVPRQRANYVGHSPVNGGRWSTRFFEKDLFVEILRDQDIFGHVATPEELTQAITVACDGTMPRQPPRRQGRRPVYWWTSEIDRLRSHFYGMQRRFNRARTEEQREERRQIKSDARAALQQAIKLSKDQHKQDLPEQLEPHGFGPAYQIRKQQWEGARVPMERDANKLQFIVNELFLERPPMEWPETEVGGDPQDPVSEEELAEELKEIARSLNPKKAPGDDNIPNMAAAAAILAFPEVFAKSYKQLLEAGTFPDAWKRQQLVLLTKSGKPPGEPSSYRPICLLSVLGKILERLIQRRLTTHLESTGGLSDPQYGFRKGRSTVDAITRVMNNGKVALDKKRKGDRLCAVVTVDVRNALNSANWTAIGQALQRENTPPYFQALLRNYFVGRTLHYDTDEKVVSRTVSAGVPQGSVLGPTLWNVMYDDLLRLPLEGLRADIIGFADDVAFTFLGRTTEQVSALATANLERIERWLRGVGLELAHQKTGFMIFCTHHVPQLAELQAGGHSIQSTETLKYLGVDLCRKQHHSRHLERVANKASRITNALTCLMPNKRGPKSRSRRQLINVGNSIIRYGVATWGRWVLDKETHRKSVQRAHRPGALRVASAFQTVSYDAACVVANTTPLVLLMQEDIRCQDEKVASGGVQSDIRKRQREETMRRWQDQWTTGAGQPGAPGLKTRRLIPDINLWVSRKHGEVDFFLTQLLTGHGFLRSYFVEKGILEGSPNCPECGDAVEDVEHVLFHCPRSDRIRNEMQQRCHSRVTMDNIVSEMCARSDT
>R6Ag3_gag#LINE/R1 gi|28569875|dbj|BAC57913.1| gag-like protein [Anopheles genus]
MEARKQKPKKNVEDEEHERLIEEFISKLKKSYKKASKAEENEAPRKVSHKAQLERFKNYANNLEIEDLRDGMIAQMIEFMESMIKEMSELKKQLKQKSTQEIEVQTAQPSELAEDAPFVPQTRKGRVPKEARKRDNNARQRSAQRETPKSSGGQSKQPKKKKKKRSLPKPEAVVIEKCENIDLAKVLKGLTHDDALKDVGDQVAKVRRTQNGDMLLVLKRGKEAVRVEAGIKNALKDKANVRTLAPSVMIEITHLDEITLAEEIAEALKQQLEIDVDHKEIKVREARTKGTQKATFRVPLSAKERVLNPGKLKVGWCVCSLREATVQVKCFKCWKLGHKGFECTGQDRSKLCIKCGQEGHKIRECPNAMTCLDCREDMVEPHITGSLRCPNRIARRQQHG
>R6Ag3_pol#LINE/R1 gi|28569876|dbj|BAC57914.1| reverse transcriptase [Anopheles genus]
MVKLIQHNQNHCGAAFNLMWQTAREREVDLFIVADPVKNQRHNNNIVYSEDQLAAIVTCGNLPIQKIVNKASRGMLAVEVGGILIVSAYAPPSWTVQEFEELLDNIVLTVSGSSKFVVAGDFNAWSSSWANTLGARGESQRLRGDTLLAAFAGLEMVLMNNGQDTFVTPERKSAIDLTFVSQSLMETTGWEVLPDYMNSDHIGILITIGKEQTPSPRDNAKKGWKTTLYHKELFAAALDRILHEMRVDTPDDLVKALDKACDATMSRLKKTCRWRGVYWWTSVIADLRRKSKAASRVAQRAYDTPEFPDKRREYKLARNALKREIKRTKKATWYRLVNMSDIILFGEVYVILKRMVGGNRVPKELDPEKLNTIIDELFPSHPVTDWPTHQPTTSQENPESVTDEEIRNIGRSLKSRKVPGPDGIPNAALATAMIEEPTIFKKVYQRCLDTGVFPDNWKKQRLVLSIPKPGKRPGESGSSRPICLIDGVAKGLERVILHRLNNHIERVQGLSENQYGFRKGRATTDAIEKVLSIASASRARNRGANRFCAVVTLDVKNAFNSASWTAIARSLQRINIPKYLYDIIGNYFRNRVLLYETNEGNRERVVTAGVPQGSVLGPTLWNLMYNEVLGLTLYDGASLIGFADDIVLVAVGSRIDDLENTIETSINIIRQWMESVELQLNISKTEYILVSSHRSRQESQIIVEGHTIRSSRHLKYLGIMIDDRLEYTQHIKYVAERAVTNTNALVRMMPNRSGPRSSRRRIIANTIIAGIRYASSIWAESLKFECRKQWLRRCHRPLVNRVISAFRSTSHDAACVIAGMMPLHILIDEDYRVRQRSITTGVSSKLARIAERPYSVEAWQREWSTTTSGSWTRRLIPNIQPWITRRHGNIEFHMSQFLSGHGFFRSHLHRMGYVPSPVCPACGDENQTAEHTIFICGMYLLTRLRLEQDLQADFDVENAINIMCSDEVTWNRVAEYVHEVMENQYNLQCSYRGNSDRELQNQEAASQETSPERAGISMNEDN
>R7Ag1_gag#LINE/R1  gi|28569878|dbj|BAC57915.1| gag-like protein [Anopheles genus]
MDKQLRGRTISVDERPAVVIRKLGSEKKLGTIVEEPSSAGVPARTMATGGVKSAGTATKLATSTPVSTGEVRRMLADAKADNETTVGIVKRLEEQIQLLRLQMEASNEQLKEAQREAREAREDARVREAEHREELRKEKELFNALLAQTLGGTSGARLESQQELQREQELLRRMESQQRQEQRQQLEDQQRQRWRQQQQKQQRQQRLPAQQWPTVQQSVRAQRQGVTESASSAVPDEAGTWVEVVRGNQRGNKQNGVNLPQQSAQRQPAHRQHQQWPHQQNGQQQQQRMGIHQQEKRRPRRKRPDEIVVVPAPGVSFKEMYVKIRTNPRIADFQRQIGVGRRTPRDHLLLPLSRDVDSAALKDIIQEVIGERGSVTVRTEMAEVVLTGIDNMIDEEAIKKALMTTLGKQSLVATVNLWERRDMTKRARVRLPRAEAELVKDRRLELGYTYCSVHEAPKVSGQLTRCFRCLERGHIAATCTGEDRSKRCLRCGDQTHKASGCTNEVKCMLCGGAHRIGAAACGGQPSN
>R7Ag1_pol#LINE/R1 gi|28569879|dbj|BAC57916.1| reverse transcriptase [Anopheles genus]
MEVLQINVNRSRSAQDLALNTMRVERADVCLMVELHSVPRNNGNWVADRDGKVAIIASSETYPVQQVVSVTQSGIAAARINDVLFICCYVSPSAGVSEFEEVMQRIDVLARGHPRVVFAGDLNAWHTAWGSCRTNAKGEAVVQLVDSLGLEVLNTGTAPTFLGNGVARPSVVDVAFASSSIAGVNTIPEHRWRIISIYSYSNHVYIRFAVGELLQRPAADSRRQEGPSTRESGTRWRTRHFDAELFGVALDVASFTERVTSAESLERVMTEACDAAMARVFPSQGHSGRPAYWWTPAIEVLCENCRLAKERLEAAIDEEEQIAAASDLLQVRTALDSSITTSKKEHFDEILRGLAEDETGQWYRNVLSRLSGSWTARERDSSVLEVIVSTLFPQHPPVDWPASPGQVLERGEEEPVRDVNEQELLDIASSLNPRKAPGLDGVPNAALTAAIRKHTDIFKKLFQECLDNERFPDEWKKQKLALIPKPGKPPGLASSFRPILLLNNPGKVYERLLLSRINDVIEDPESPRLAENQYGFRRGRSTVQAIQLVVDAGSHAMSFGRTNNRDKRCLLVVALDVRNAFNTASWQCIATALEDKGVPRQLRNILRDYFANRELVYDTADGPVTRRVTAGVPQGSILGPTLWNIMYDGVLRVELPEGASVIGYADDIVVMARGCTPQEAALVAEQAVDAIAAWMEDHHLQLAPEKTEGVMISSLRRGQLKVPFRVGDTIIHSKQSIRYLGVQIHDHLSWKPHVELSTAKALRVVGVVTAVMRNHSGPQVAKRRLLAAVAESIIRYAAPVWSEATDLQWCQRKLAQVQRPLARGVTSSFVSVAYETGVALAGLVPFRLLVREDARCHRRLLAAPGASRKDIRLEERQGTFQEWQRAWDAAAAAPTASRYAVWAHRMIPDLHLWMSRRHGEVDFHLSQVLTGHGYFREYLHVCGFAPSAECPRCPGSVESVAHVLFQCEVFHEIRVELLGYGTSDPVNENNLGMKLLESPERWNSIQEAARKITKVLQQLWREDELQLNLQAHLAALPTRAAAVDAGPLDGEQVSVDGVAELFRSNRGRARRTRRGRRRAEERVEVRLASAMAAAEREREDSILMAAVRAEEAGEAPPPIPMRRRGLPPSPRTVRARHERRLYLQRLYRQRAREGTLPTVPHGRNRRSRSAPSEADTIRRRMRRREMERLRRTARRVPSNQGVREVLSADALAAITEATTSGR
>R7Ag2_gag#LINE/R1 1132-2610 via tfasty with R7Ag1_gag, 2 frameshifts and 1 stopcodon. Masked Q richest regions.  Overlaps gi|28569881|dbj|BAC57917.1| gag-like protein [Anopheles gambiae]
MDRNLRPRQPSVDCSLEAIPKKTTVSAKVDTGRTSMTAKMNEEKEIRLHLMLQAEKAEKAELMKTVASLQATIEGLQKQLAEEQQARLSADAELREERDAMLAEIRDLGQxMRRELSWKLGQQQQLQLQSQPGPSGTAAVKLPDHQAPTAEGIRQAEQLSFAEVVRRKFRGMAKGKLRQPPXXXXXXXXXXXXXXXXXXXRYPQRQAGRWHAAATKQXXXXXXXXXXXXXXXXXXXXXXXXXXQRSNATQAQRREQLRNEQRRPARLRQDQIIFEPAEGTSYKVLYEKIRLNPRLQEENKGVHQGYRTTRDFLRLELKKDTDAASLLQRIQQEVGDLAAGRIVTEMAEVLITGIDMLAKKEDVERGLQRALERTAVAATTSLWERRDGTQRARVRLPRRDTDLLLDKRIVVGHSVCLVRSAPKQQQSAVRCFRCLERGHTTADCAGEDRSSLCLHCGAADHRAASCTSDPKCIVCGGPHRIAAPMCKGPPSQC
>R7Ag2_pol#LINE/R1 2526-6113 Includes gi|28569882|dbj|BAC57918.1| reverse transcriptase [Anopheles gambiae]
MHFGPEVHCLRRPTSHRRPHVQRTAITMLNILQFNANHCENAQDLALHVITTESLDVLLLSEPYCVPRNNGNWVTDESKTVAIVVNGNRLPIQRIRHRQTLGVVAADVGGTTIVSCYVSPQTGVPEFRSIMEKIDLIVRGCSRVLLAGDFNAMHLDWGSSRTCPKGLELLQLADNLGLVLLNKADCLPTFKGNRADTNRFPPSRPDVTFASSVISRLDPRDDSARGWRVPDVATLSDHRYVQYEVGESSPPTRDRAARRGQRPARVSKAGTRWKTSQFDSQLFGKALAMTGFARQVNSVESLVESLTSVCDETMSRVFPTQDHTGRPAYWWTPAIQAMIDNLSRKEQMTMRTIPPEEQLQTELLAARESLRKAIRLSKNEAFDRFLRSIREDVTGIFFRKVFHWFQGARSAPERDPAELRRIVDALFPVHPPVEWPDLGVGNMAPLRSIGLTELDQIAASMHPRKAPGLDGVPNAALTVALRQQPEPFRRVFQECLDMSCFPQPWKKQRLVLLPKPGKSPGEPSSFRPICLLDNTGKALERLLLNRLNEYIEDPESPQLSEQQFGFRRGRSTLQAIQQVVDAGRRALSLGRTNNRDRRCLMVVALDVRNAFNTASWQSIAEALQAKGVPVQLCRILQDYFADRELEYDTADGPVTRRVSAGVTQGSILGPTLWNIMYDGVLAVELPEGASIVGFADDLAILAAGTIPEHAAAIAEEAVAAVNNWMVQHKLSLAPEKTELLMISSKRSGYRNIPVNICGVEVRSKRSIRYLGVMLHDHLSWRPHVEMVADKALRVVRALRGIMRNHSGPQVSKRKLLAAVAASIIRYGAPVWTEATDLQWCRRILDRVQRLLAQGITSAFHSTSCEVAVVLAGELPYHLLAKEDARCYNRQQSSPDSSREAIRQEEKETSLQLWQQQWDDVAANNTSRYLRWAHRQVPDVRLWTGRKHGEVDFYLSQVLSGHAFVHEFLHVFGFAPSPDCPRCAGSVESVAHVMFECPRFADVRAEFLQGVGEHNLGSRLLESAEWWDRIQQAARRILSVLQEDWREEQQTLAAAEAAQPDPASSLPEDMAEAERRLLRRREVRNRSAQRRRQQQRQQRLGDFELVPAVLARAAANEAAEPTGEVEEEEVSPPVPPIPPRSRRLPPSPRTTEMRRRRRNYMQLQYRRRRRDGELGDVPQGRQRRGRIPTSAAELER
>RT1_gag#LINE/R1 2482-4269 [Anopheles genus]
MSGLGGDAHPQGSSGRVLRPRARSVSLNRVDALKVSDSTPVEPPPTAGIVYLSDDEEEELNCTILAGPSGLAVPPMGKVPLVVLDKLPSQSQQREEMTVPATSTPKAGKCSSAEPSLSEMNESLKLLAMQVAQLSKELSLCRKELQESLMKNAALERELETYRMGARSVIELQQQAAAAPMMTAQGAHSSRNRRGRQGPQQQEQRQQQQQHQQREQQQQQQQQQQQQQQQQQQQQRNQQREWQQQQQQQQHQQREQQQQQRVQQQNQQHQRQQQQQQQQRQQQQQQEQQELWTTVVRRRQNTQQQQQSNQPQQQQQQTGRYQPPQMRQQLQQQQQQRQPQRYVVAGSSQQQQQQHQQQQQKRKRPKPELIEISPGQNETFESVSLKIRKAVDDNGTHKELKDFIIMGRRTDKALLRLTLARSANATLILQQIRTIIGEAGTCRHVTEMAALVVNDIDPLAKEEELTALLENKIEGGAGIVSTSIRTMPDGTQRARVRLPAKAAKALDGTKLRLGFCISRVKMAPPTPKEHLRCYRCLEHGHNARDCRSPVDRQNVCIRCGQEGHKAGTCMEEIRCGKCDGPHVIGDRTCDRSATQ
>RT1_pol#LINE/R1 4185-7733 [Anopheles genus]
MHGRNTLRQMRWPPCYRGPDMRSVGHPMTQLKVLQVNLGGGRIAQDLVLQTARQMEVDVLVLSHTYRPPENNPRWAVDASKKVAVVATGRYPLQGQWSSDVPGLIAAKVGGITFLSCYAPPSLSREGFAEFVEAIELEAQSHPQVVVAGDFNAWHEEWGSRRSNERGEVLLEASQQLGLLLMNRGNVATFVGNGVATASVVDVTFASSSIAQPSTWLVRNTDTRSDHRYITYSVGPASADQQRNQGQSRQRGQRERFQHAGTRFKTKQFSKENFLATLHGEGFREKAVNHQGMISAMISACEKTMQRMTSSFPDPHRDVYWWTPLIALLRQNCEQTRDRMQQTSDLQNRSLAAAQYRTAKAELDRAIRASKKAAFQELIDAAEENVFGAGYLVVLSRLRGGRAPPETERARLESIVTELFPQHPPFNWPSISSEEEQEQPADQQTPWTQVTIPELRLIASTMPNKKAPGLDGIPNAAVKAAILAYTDVFQALYQSCLETATFPAPWKRQRLVLLPKPGKPPGSNGSYRPLCMLDALGKVLEKLILNRLHNHLEDPAAVRLSDRQHGFRRGRSTIGAIRTVIEAGQSAMRFRRTNGRDNRFLLVVSMDVKNAFNTASWQAIATALQMKGVPAGLQRIVRSYFENRELVFETSDGPVTRSITAGVPQGSILGPTLWNTMYDGVLDVALPQDCEMVAYADDLVLLIPGIDVNAVKAAAEEAVASVSHWMAQHHLQIAPEKTECVLISSTKNPTQVTIRVGDVEVTSSRTMRYLGVTLHDHLSWLPHVREVTTRARKIADAVTRLLRNHSGPKTSKARLLASVAESVIRYAAPIWHGEVTKRECRRLLERVQRVSARRVARTFRTVRYETATLLAGLTPICLLIEEDARVFERVNDPGRSITKAAIRLEERQRTITMWQSQWDAEADTSRYTRWTHRIIRDISAWQGRRHGEMTFHLAQVLSGHGFFREYLAINGFTESPDCRSCAGVPENAHHAIFECPRFARVRMEYFGELGPNPVTPDSLQDFLMGSQDNWSSFCEAARRITTTLQRDWDTEREQRAASNREEAEIQQQLQREEDERRTEERRQLHNEANRAYRQRNRRSQPTPPAPPPTPREAARLEDGRRRVARWRERQRMIRNGGIQMLRALFGHDAWSSESDDEPDDVERGGLDAAQQAAAAEAERAAR
>RT2_gag#LINE/R1 1134-2858 gi|159619|gb|AAA29366.1| [Anopheles gambiae]
TPELKRKPTSSCSRSPARRRRIQGHSDPLGHSTPGSFDPQGYFTPPIANVGYRDGSTREIDPLGARATSVDCRTSLAPCSKLFAAEPRVALPKLSATGASKPIAEPKAASATPAPELELLRATIQRLEEQNCAMKEQNAKLLEQITGMCQLLQEEKEEAKRREEKLEAQMEKLAAAHQRDRDVLNSLLAAKVGGGQPSASPRQPPTPLPRRSSAQPQQQQQQQQRNQHEQEQPRASTSRAVMPPRSEALTAVRGDVVPELTYSEVVRRRYRGKATGKPRSQQQPQQQQQQRQLQRQAVGIAQHQQQQQQRQPQRQAVAGSQQQQQERMQQQQQLQRKRKPRPDIIEVSPSEGETWDGIYDKVRKAIRLDAAHSEMKGHIKQGRRTHARLLRMELSKTANAPLMLEGVRKIIGDAGVSRLVTEMGELLVVDIDPLATEEDIIAALDAKIGASAGVVSASIWELPDGSKRARIRLPVKSARQLEGLKLFLCDCVSKVRAAPPTPPERQRCFRCLEMGHIASNCRSTADRQNLCIRCGLTGHKARSCQNEAKCALCGGAHHIGHSECARSAQRCSRP
>RT2_pol#LINE/R1 2812-6477 gi|159620|gb|AAA29365.1| (at x removed a glutamine-serine string) [Anopheles gambiae]
ATANVLVRPNDVPGPESSAGEPGHGRDAQNLVLQAAREEKADVLILSDVLRPPENNGRWAFSSCKAVAVVAVGELPIQRVWCSEAQGLVAAQIGGVVFISCYAPPSLNLAEFERFLEAIELEGFSHPQVVVAGDFNARHEEWGSPRTCDRGEELHGMVEQLGLIVINQGREYTFVGNGVALPSIVDVAFASPSIARPDTWVVSTSYTASDHRYVLYTVGGTPPSPEQLQNHQQTAxGDSSSQRRVRHAGRRWKASQFSPSSFLEALFAADFVQRASTQEGMIAAMLKACDETMQRVTRLHQDPHRNIFWWSPLLARLRNNCEVARDRMLQTADLEERSIAAAEHRTARAELSRAIRASKRNLFQELIEIAEENAFGAGYRVVMSRLRGSRTPSEADRVVLERIISDLFPEHPPCDWSQLSNVGSVEGATTTAGIAPVTDDELLLIASQMANHKAPGLDGIPNAAVKTAIMLFPESSGFLYQDCLNRASFPAQWKRQRLVLLPKQGKPPGESSSYRPLCMLDALGKVLERLILNRLNEHLEEPSSPRLSDRQFGFRRGRSTVSAIQRVVEAGRTAMSFRRTNGRDNRFLLVVALDVKNAFNTANWQSIASRLQAKGVPVGLQRMLRSYFEDRVLYFDTSEGPVVRHVTAGVPQGSILGPTLWNIMYDGVLDVPLPPDVEVIGYADDLALLVPATTTDEVRARAEEAVDQVQRWMQQHGLELAPAKTEAVLISSKKTPPQVTFRVGDVEVQSSRSIRYLGVQLQDHLKWRDHVTKVSEKASRVVAAVTRLMQNHSGPRTAKSRLLAYVAESVLRYAAPVWAEATQVRECRRMLQRVQRKAAIRVARAFRTVRYETATLLAGLVPICHLINEDARVHQQLLAPDRAATREDIRATERQNTIDCWQEEWDADALQQDASRHTRWTHRVIPSVGDWQSRKHGDMTFHLAQVLSGHGFFRDYLCHNGFTSSPDCQLCVGVPETADDAFFECPRFAAVRQELLGEGGPDPVCPDTLQRHLLRDADSWSRICEGAKRITAQLQRAWDEERAALAVNVIERQDEDAAELEAQRAEVRRARNERRNANRRAATARRREERRAGLPPTPPASPRTAQRRAALRERQARFRERRRNRRLLGMSGQAINNDDDGRERADLAAGPSGMRNRAIDEENEATDGGLNAAEEAAVVEAEVASR
>RTAg3_gag#LINE/R1 1206-2741 gi|28569854|dbj|BAC57899.1| gag-like protein [Anopheles gambiae]
MMASSGMSTRASARSASVDCRSSLASGSKLFAPEPRVALPRVSVTGINKPTVATKAASTTPELELLKATIQQLEEQNLEMKEQNFRLAEQITRMCQLLQEEKEEAKRREEKLKAQMEKLAAAHQRDRNLLNSLLAAKVAGGQPSASSRQPPTPLPRRSSAQPQQQQQQQQRNQQEQEQPRASTSHAVMLPRSEASTAVRGDVVPELTFSEVVRRRYRGKATGKPRSQQQPQQQQQPQQKQQQLQRRQQQQQQHQGQRYVPPQLRQQAHQQQQRQQQKVRPRPDKIEVVPSAGHSWYTLYKTVRDAVKQDPHKGLADHLKMGKRSHAANFRMELSNSANASLVRAEGQEIVGDAGLARVITDMADVLITNIDPLATEEDIKKAIEREHQEPIEIVRVSVWELQDGTQRARVHLPAKAAAAFEGSKLRLCGCISKIRGVEKAAPERQRCYRCLERGHLAHACRSSTDRQQLCIRCGSEGHKARDCSSYVKCAACGGPHRIGHMSCEHPASRST
>RTAg3_pol#LINE/R1 2669-6190 gi|28569855|dbj|BAC57900.1| reverse transcriptase [Anopheles gambiae]
MCGLRWTSSHRAHELRTSGFAFNLKVMQINVDHCQAGQDLALQAAREHRADVLLLSDIYRPPANNGRWAYDAAKSVAVVATSSYPIQRVLRSAVPGIVAAQIGGIVFISCYARPRRPEEDYEGFLAAVQLEASTHSQVVIDGDFNAWHTEWGSARNSQRGEDLLQLIQSVQLQVINSGNEPTFIGRGAATSSVIDVCFATPSIARPETWEVHEFARSDHQLITYSVGEAEQQSRGLSTGGPSAGRQRVICAGRRWITTQFHVDSFRSALEDVNFAEQATTHAGLVDAMVDACDIVMQRAPNVLQHQHRDVYWWAPVIEELRNECIAARERMRLTTDLQERSLAAAEHRTAKTRLEKAIKVGKRAEFAKLIDIAEENELGVGYQVVLSHLRGSRVPPETDPVELGRIVTDLFPTHPPVYWPETDDVDSGASDFDRVTPEELQEIAAHMAIRKAPGLDGIPNAAVKVAIEKYPGVFCRVYQDCLNTGTFPQQWKRQRLVLLPKPGKAPGESSSYRPLCMLDALGKVLERLILNRHLEDPDSPQLSDAQYGFRRGRSTISAIQSLVDAGKASRSFGQTNNRDKRCLMVVALDVRNAFNTASWQSIANALREKGVPSGLLRILQSYFTDRELIFNTSEGPVVRCVSAGVPQGSILGPTLWNVMYDGVLRIPLPDEAKVIGYADDLVVLAPGRTPEESAAVAEAAVSAVDQWMQQHHLELAPAKTEMTIISSLKHPPSHISIDVRGTAVPYSRSIKHLGVLVHDHLSWIPHVTAVTQRAVQIAQAVGRLMPNHRGPKMSKSRLLAAVADSVMRYAAPVWHEALNTRECRRLLERVQRKSAIAVARTFRTVRYETAVLLAGLLPICRAICEDTRVHSRRGTAAGAQLRKEERETTIAEWQATWDSDAAGHQASGYVRWAHRLIPDIGAWQSRKHGEVNFHLSQIISGHGFFRKYLADMKFTSSPDCPNCPGVRESAEHAMFACLRFAEVRERLMDGVNPDTLLTHMLQSQQNWSNVCEAAKQITTILQREWDDFRTSLFEQGVLADNAQLRNADVLRQERLRRYNETRNAARRAATQQRQAERLPPPPPSPRTERRREVNRLAVARLRERQRAARAEMHGAYQPAPSNDSDDDDDDVENRQATNAASTSEAARTAAEESRVGLTEAEAAAAVEAELSSR
>RTAg4_gag#LINE/R1 1147-3321 (long Q-rich region masked) gi|28569857|dbj|BAC57901.1| gag-like protein [Anopheles gambiae]
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
>RTAg4_pol#LINE/R1 3318-6614 gi|28569858|dbj|BAC57902.1| reverse transcriptase [Anopheles gambiae]
MTPQLRVMQVNLGRGERAQDIALQTAQEKRVDVLLLLELYRPPANNGRWAFDCSKKVAIVATGSLPLQRIWCSNTPGLVAAEIGGTTFLSCYAPPRQPTDEFERFIEAVQLETLTHSQVVIAGDFNAWHVEWGSERNSEKGEELLSAIQQLDLVVLNQGTTSTFDGNGAATASIVDVAFATPTIAQPGTWNVCGDYSYSDHRYITYTVGTIVPVVNEPSSPRMRHQGRIRHADRRYKATQFSQRAFRARFSERAVSHERMVEIMLATCDKTMQRVTTSHSDPHRDLFWWTPLLRLLRENCDRARDRMRQTSDLQERSIAAAEHRTARAELGKAIKASKRNSFQELIDIAEENVFGAGYLVVLSHLRGGRTPPETERDRLEHIVSDLFPQHPPLVWPEAADIEGEEQPGAVADVSDDELKLIARRMANKKAPGLDGIPNAAVKAAILEHTGVFTALYQDCLVNGTFPAAWKRQRLVLIPKPGKPSGVSCSYRPLCMLDALGKVLERLILNRLHEFLEDPESPRLSDRQYGFRRGCSTIGLIQRVVEAGQRAMSFGRANRRDKRFLLVAALDVRNAFNTASWQAIATALRTKRVPAGLQRIIHSYFQDRELVYETSEGPVVRSVTAGVPQGSILGPTLWNTMYDGVLDIALPPDAEILGYADDLVLLVPGTTPDNVKAAAEEAIISVMEWMARHHLELAPAKTEMVVISSTKAPTRITVRVGDVDVTSSRSIRYLGVTLQDKLSWLPHVKEVTERAGKIADATSRLLRNHSEPRASKAKLLASVSESVMRYAAPVWSKELQKREPGRLLERVQRKMALRVARAFRTVRYETATLLAGLTPICLLLDEDARVYQRLSAVNRTDTRANIRKQERQATIEQWQQQWDAEADTSRHTRWAHRVLPNIGSWQSRKHGDVSFHLCQVLSGHGFFRDYLCRNGFTSSPDCQRCSGVPETAEHAMFECPRFAEVRQQLLGEGITDPVRPENLQQHLLRDAESWSRICEAAKRITASLQQAWDDERAALAAHGNEQHFEEVADLEARRAEIRRARNDRRNASRRAARARQRELQRAGRPPSPPPSPRTAARRADLRLRQARFRARRRQAI
>SART1_gag#LINE/R1 gi|2055275|dbj|BAA19775.1| Gag protein [Bombyx mori]
MSSYKEELPQEGTSRSAGGESLRAAERSAARCPSSSGGGNNCSKRSVKDGGRVSAKDGENKERRGGSVKDNEAANVLSDDSMATASSSRSSLTGSRRKRLKGSSTECSESSSGEETACSARRAASKTPSKRGRGRPPTTGQYVGLAAAKEAYVKAQREELALREREVTESVRKLRVREDAVAGSTGEPALDPERRLDESAKLAVAIAAKSGNLKGTYVRALKEMAAAIREAKEDMAARTTDGETKRLQELCRRQEAEILHLKNAIADMRSEMARLAQAVGSPAAVPAPVPAPAPIQRSDDEEERRLQRIMRAVGTMLDARLSGLEARLPPEPRMRPPLAADHRRSRGQEKTPTPPTAAESMPTPGPTAAVATAAPNGGGPQKKKAPKSRQQPAQPEPRTFPPAPAALTEAWTTVARRGAKPRTATATGTVSAPPPLKEKKKRLRPPRSQAVIVKLQPEAVERGVTYRAVLAEARAKIDTAELGIPIQRIRSAVTGAKVLVVDGADQNEKADLLAEKLREVLPSDSIVVSRPTITAAVRLSGLDESISREELVAEVARIGECPPDIVKVGEIKMGPGGTGQVLVRCPIAGVKKILAVNKLRIGWSVLRVQLLEARRLQCYRCHALGHVSARCPSSVDRSGECYRCGQTGHKSAGCALTPHCTICAGAGRPAAHVSGGKACAKPPKQRQQRSSAAEEKRRSQPGTATATPMDDE
>SART1_pol#LINE/R1 gi|2055276|dbj|BAA19776.1| Pol protein R1-4_BM_pol over 80% identical and of poor quality. [Bombyx mori]
MTSSPYHILQGNLNRSARAQDLLIQSMAERLTHLAVVAEPYRVPSVPDWAGDIDGLVAVVQRRSAVGAPPEFDVVQRGRGFVAVFWAGLLVVGVYFSPNRPLAEFESFLDELGQVVGRSRSRRALVLGDLNAKSSAWGSPVTCPRGRETEEWLVGSGLVVLNRGAENTCVRRSGGSVVDVSFATPDVARRVCGWEVLVDVETLSDHRYIGFRVAAAPESSSVTTLPFGGGVEGPRWALKRLDTERLQEAAVVQAWRLDSLGEPADVREGAERLREAMSRVCDYAMPRVRAYAPRRQVYWWNEGIAGLRRRCAGSRRKYQHLRRRRRRDEEEEDRAYEEYREDVRALRVAIGEAKEAAWKELLETLDRDPWGRPYRLARSTMRSWAPPATSTLPPDIVRHVIGGLFPDAPGTPFVPPVMITPTTGAQIGAEEEEVSPAEFGAAIEKMKARRTAPGPDGLSNRAWALALQTEGGLGPVLRGLLSRCLREGRFPEEWKTGRLVLIPKEGRPRDQPSGYRPIVVLSEAGKLLERVVAGRLVRHLENVGPNLADSQYGFRRGRSTLDAVQRVRDLSDQACSRGGVLLAVSIDISNAFNTVPWSTILESLRFHRVPTGLRNLIEDYLAGRAVVFPERRGWGHKAVSCGVPQGSVLGPLLWDVGFDWVLRGANLRGVQVICYADDTLVTARGDDYRSASILAAAAVATVVARIRKLGLEVALHKSEAVCFHPARKGPPPGASITIGGTAIAVRSQLKYLGLVLDSRWSFDRHFDVLVPKLLGAAGALARLLPNIGGGGKSVRRLYLGVVRSMALYGAPVWSPTLSARNAALLQRVQRVLAVRVVRGYRTISTEVACALAGSLPWEYEAEVLAAVYRRRAQSLGRGSVPRLSVVARWRRAARRVATLKWKERLAAEEIHRGSRTRRRTLAALVPVLEAWIDRRHGVLDFRLTQVLSGHGCFGRYLWRVGREPHPGCHQCGHPDDDAQHALEACPRWEYPRQSLVAVLGADLSLPVVVSRMVEDERCWRAMADYADLVMTLRETEERERECDPNSVALRRKRRGGRRGRRAPAQLP
>TRAS1_Bombyx#LINE/R1 gi|1549144|dbj|BAA07467.1| ORF2 [Bombyx mori]
MKGFRGVRVFQSTAQGDGTVKAAIAVFDHDLDVIQYPQLTTNNIVVVGIRTRAWEITLVSYYFEPDKPIESYLEQIKRVERKMGPKRLIFGGDANAKSTWWGCKEDDARGDQLMGTLGELGLHILNEGDVPTFDTIRGGKRYQSRVDVTFCTEDMLDLIDGWRVDEDLVSSDHNGMVFNIRLQKSKSIKIERTTRIFNTKKANWSLFHEKMAQLLLDNNMTTLIDTIDNKTKVESAINTYTNIITKTCEQSIPKKTSREILTIPWWSEKLAEMRKETNTMRRRIRNAAQDRRQHVVDEYLKQKEKYESEVREAQAGSWKEFCGKQDREGVWEGIYRVMSRARTREEDCPLTDVNGAPLDPEKSAKLLAETFYPEDREEEDNDEHAEIRRRAKISEGVHDEYVPSFTVNELKHALKSFNPKKAPGADGLTSDICTHAVDLDQKLFLGLINKCLEHRYFPKIWKAATVVILRKSGKDSYTEPKSHRPIGLLPVLGKLYEKMLVARLKYHLLPRMSTRQFGFMPQRSTEDSLYTLMQHVKEKLKEKRIITIVSLDIEGAFDSAWWPALEVRLAEEKCPEYLRRVISSYLSDRRVSVRYAGAEYERATSKGCVQGSIGGPILWNLLLDPLIHQLQARGEYIQAFADDVVLVFDGDSALQIERQANTSLEHVQAWGVRNKLKFAPHKTCAMTITRRLKYDTPRLNMGGTEIATYKELRILGLTIDDKLTFNTHVRNVCKKAIGMYKILARTARVGWGLSPEVIRVIYVAVVEPTVLYAAAVWHESVYKLGVQKQLNVIQRGFAQKLCRAYRTVSLNSALLMAGILPLDLRVREAASLFEAKKGVCQSWLGDREIERMSSAMDAPHPAEQQSLEFGNLVDEEQYNNLNHLDVRIFTDGSKIEGRVGAALSIWDGEVEIRSLKLALAPYCTVYQAELLALSYAVKEAQLRNGSTFGVFSDSKAALLTVINHGSLHPLAVDIRKMLKQCALQNKTVALYWIKAHAGLEGNERADQLAKEAALLSKKSPNYDLCPVSYVKRIIRSGSLDEWNRRYRDSDRASVTKMFFPDAVAAYSTVRKMRITGHITQFTTGHGGFSEYLARFKCKGDPSCACEPGMPETVEHLLTSCPIFGKQRFELENKINKIVNKENLCKLIVEKYTKELFIVMLYK
>TRAS3_BM_gag#LINE/R1 2207-3673 [Bombyx mori]
LTGLNHYRTRQSFARNTSTPLTTCSEYDPPSRKAMTSDKSPRNPKSPEGGERRSIGLRIDEWETSKGKTIPSSTKLAAQTVVAAKPTTSQAGKTTSPGQCQDRSAEAKACLLKAKLHLSNSGNIKREIKIEVTAALDKLYQLVKDAEMDRKKGKSKEEKTGDVGQRATDRTFTVSPMDANIYVAKMEEHAKLLQESKKMMGDLKEAMEKATVTAATYASVAAIQPAATNEKPEVMRQTLHSVVITSKDECETGEKVLDRVRKAVDAKEGWIEVKNVRKAKDRKVIIGLGTKAERDKLKNRLEKAETQLHVEEVENRDPLMMLRSVLTIHSDEDILKALRNQNRDIFRDLCEGEDRVVIRYRRRARNPHTNHVVVSVSPTVWQRATGKGSVHIDLRRIKVEDQSPLVQCTRCLGYGHSKRFCVESVDLCSHCGGPHLKTECSDWLAKVPPKCRNCTKADIDNAEHNAFDSNCQVRKRWDDLARSTVAYC
>TRAS3_BM_pol#LINE/R1 3663-7349 [Bombyx mori]
RIAKGSQEDQVPYRVVQANLQRNKLATNEVLVEAARLKIAVGLLQEPYVGGAKEMKTQRGMRVFQNADVSGGTVKAAIVVFDHNINVVQYPKLTTNNICVVGINTSAWSITLVSFYFEPDHPIEPYLEHLGKIKEEIGRSKIIYGGDSNAKSTWWGSPSIDNRGTSMLGTLEELELNILNTGEIPTFDTIRGGKRYKSYVDVTACSTDLMDLVSDWRVDEGLTTSDHNAILFNIHTKRAIGIKIQRTTRIYNTKKANWSNFHEKMRQLIQEKQLTIENIKQINTIAEIEIAENKYTNIIKTVCNQTIPKKKTQEKFTLPWWSDELAAMKREVATRKRRIRCAAPIRRSRVVEEYLKLKQEYELKAASAQIESWKNYCHRQDKEGVWEGIYRVIGRVTKREEDLPLEKDGNILDAKQSVKLLSETFYPKDSTDGDNDYHRQIREEAEKVNCGKQNNNIFEPQFTMSELKWASNSFNPKKAPGADGFTADICHHAINSSPHVFLTLLNKCLEQSYFPKAWKEATVVVLRKPGKESYTNHKSYRPIGLHTILGKIYEKMLISRVKYHLIPRTSTRQFGFMPQRSTEDSLYTMMQHISNKRKEKKIVTLVSLDIEGAFDCAWWPAIRVRLAQENCPLNLRKVMDSYLTDRKVRVRYAGEEHSVNTSKGCVQGSIGGPVLWNLLLDPLLKSLDTQKVYCQAFADDVVLVFDGDTALEIENRANAALEHVQEWGINNKLKFAPQKTKAMVITRRLKYDIPRLNMGGTVIPMSEDIKILGVTVDNKLTFNAHVSNVCRRAIEVYKQLARAARASWGLHPEVIKLIYTATIEPIVLYAASVWVSAVAKLGVIKQLAAVQRGIAQKVCKAYRTVSLNSALILAGMLPLDLRVREAASLYEAKKGQLLPGLADAEIEQMTPFAEMPHPVERADLQIVCLEDQEQVDGNSDYDECIFTDGSKIGGKVGAALSIWKGDTETKTRKLALSNYCTVYQAELLALCVATTEVRKSKSKSFGVYSDSMSALQTITNYDSPHPLAVEARQNIKASLLQGKAVTLHWIKAHAGLKGNERADGLAKEAAENSRKRPDYDRCPISFVKRSLRMTTLEEWNRRYTTGETASVTKLFFPDALVAYRIVRKIQPSNILTQIMTGHGGFSEYLCRFKCKESPSCICDPAVKETVPHVLVECPIFAQARHDIEQKLDVKIGLDTLHEIIIDTNRNQFLKYCIAIIGIVIKRNK
>TRAS3_SC_pol#LINE/R1 1-1923 Fragment [Samia cynthia]
GTVKAAIVVYGDKFGVTVDPGLVDKNIAAAVLHAGHLSLGVISVYFEPNEPIETYIVRLERICDKLGALNLIIGGDVNAKSLWWGSSSEGHRGEAYRSFLDATGLQILNEGDLPTFQVVRGGRLFTSIVDVTVCSPTLLGRIDDWKVDMNLTSSDHNSITFSIRVDQPLPSQRPVTTRIYNTKKVVWSEFISTFQEKLSERSLTACNVDKVEDIEGLETVVSDYVICIEEACNKVVPKAGGVKKVARPPWWSEDLDRLKREATRRKRRIRCAAPSRRQYVVKDYLDALELYKRQAADAQTRSWKEFCTTQERESLWDGIYRVLRRTERRREEVLLKDPNGVILDPQGSVERLASVLFPEDTVEDETEDHRAVREGTEGILPADIRGLSADDPPFTREEVMRVCKEIHPLKAPGNDGLTADICTRAILGGGEDVFLALANKCLELSHFPRPWKVAHVCILRKPGREDYCDPKSYRPIGLLPVLGKLLEKLFVRRLRWHLLPKLSVRQYGFMPQRGTEDSLYDLVNHIRTRVVAKEVVTLVSLDIEGAFDNAWWPGLKSQLIAKECPRNLYGIVSSYLEDRRVELNYAGIKVSRESSKGCVQGSIAGPSFWDVILDSLLVELDSAGVYCQAFADDVVLVFDG
>TRAS4_SC_pol#LINE/R1 1-1920 Fragment [Samia cynthia]
GTVKAAIAIFDERLSIIEHSQLTTHNVAVATLDTGHTKIGIISVYFEDTKPLTPYLDKIKTIIEKLDTKKVIIGGDVNAWSSWWGSRRENDRGEEITGWITEEGYHVLNQGSIPTFYTIRGGKEYQSCVDITICSDQILSKIRGWTIDQELVNSDHNCIKFQIITGELKTRTQKKTTRIYKTQKAKWTDFRLTISKKIEANKITTNAIREITETQELDSIIEKYNNIITQACKLNIPKINRNTTNKQKNNLPWWTVELEEEKRRVLTMKRRIRCAAQQRKSHVVEEYLKRKEKYELAANEARTNSWREFCTKQKRETMWEGIYRVIRKAAPQYEDQLLSQNGQNLNPEDSVKLLGATFFPDDCTTDDTVEHTKIRDDAKVTNIEVDDTEDDPPITEAEMIHAARSFNKKKAPGKDGFTADICFNAIKANSETFLEIINKCMELSWYPTSWKSAFILILRKPNKASYENPRAYRPIGLLPVLGKIMEKIIVKRIRWHTAPKLNPRQYGFTPQRCTEDSLYDLMTHIMNNLTQRKINIVVSLDIEGAFDSAWWPVLKCRLKELKCPRNLRKIVDSYLDNRQVEMNYAGASYSKITTKGCVQGSISGPVFWNIIIDPLIDRLADKNIYCQAFADDVVLVFDG
>TRAS6_BM_pol#LINE/R1 1-1909 Fragment [Bombyx mori]
GTVKAAIVVFNNDFKVIQYPKLITKNIMVVGIQTVAWEITLVSFYFEPDSPIEPYLEHLKRIELEIGSIKLLVGGDTNAKSSWWGSPIIDHRGEDLSGTLEEMGLHILNAGETPTFDCVRGGKRYTSYIDITACSVDLLDLVDGWKIDEGLTSSDHNGIVFNIRLQRSKGINISRTTRKFNTKKANWPKFHEKLSQLMQENKLTAAEINNINTIEQLEKTINTLTKTIDNTCTISIPIKQTKEKLTLPWWSEKLAGMKKEVATRKRRVRNAAPIRRSKVVEEYLKKKEEYEEEAAKAQTDSWKDFCCRQGGEGVWSGIYRVISRTTTREEDSILVKDGEFLDAKGSAKLLADNFYPEDLRTNDNAYHRQIRSEANIVNVGKQTEYCDPPFTMAELRQASGSFNPKKAPGMDGFTADICCHTIEANPELFLSLLNKCLELYHFPMAWKVATVVMLRKPGKGDYTTPKAYRPIGLLPILGKIYEKMLVTRLKFHLLPRMSTRQYGFMPQRGAEDSLYILMQHIRKKLKEKKIIALVSLDIEGAFDSAWWPAIRVRLAEEKCPVNLRRVIDSYLSNRKVVVKYAGEEYDKGTNKGCVQGSIGGPILWNLLLDPLLKSLENSGEYCQAFADDVVLVFDG
>TRAS_Samia_pol#LINE/R1 gi|12597228|dbj|BAB21518.1| includes endonuclease domain and reverse transcriptase domain (partial) [Samia cynthia]
GTVKAAIIVFGDLLNVIHDPQLVTETEAAVLLEGGGLKLGVVSVYLEGNNDIEPYLHRIKLTCGKLDTGHLIVAGDVNAWSHWWGSSSEDGRGVAYHSFLNEMGLEILNTGTTPTFEVLRGDRLYTSCIDVTACSGSLLGRVEDWRVDRGLTTSDHNTITFSLRVERALTPLPSITTRKYNTKKANWTDFGRLFGAMLEENNISESIRKSRTPEDLEIAIQAYTSAIHEACSTTIPQARPWKGNPVPPWWNRQLEDLKREVLRRKRRIRNAAPLRKQFVIDEYLRAKLEYAAEARKAQTESWKEFCSTQKRESMWDKIYRVIRKSSRRQEDVLLRDQVGNTLSPQQSAELLAKSFYPDDLEASDDQYHKDLRTTVEVGQSGFFSEDDPLITSTELDTVLRAQNPKKAPGPDGLTSDICTAAINCDRVVFLALANKCLALSHFPRAWKVAHVIILRKPGKDDYTSPKSYRPIGLLPVLGKIVEKLIIGRLQWHIMPALNRRQYGFMPQSSTEDALYDLVHHIRTELQDKKSVLVISLDIEGAFDNAWWPALKLQLQERRIPRNLYKLVDSYLRDRKITVNYARATYEKGTTKGCVQGSISGPTFWNIILDPLLQLLAREGIHAQAFADDVVLVFDGD
>Waldo-1_AAe_gag#LINE/R1 757-2163 [Aedes aegypti]
MEVSVIEVEEEVTNPFVKSGLVRTPPPQTQQVQKQPTNEQQAQQQGQQQYSVWTKPPQPPRVETAKKLVDELHEYVDKRSNVHKDIKALVIKLQGALGSAVKEWKNVVQRAEAGEKELLAVKTALEACRAAEMRRAEADTATREVNAARSIPPGVQSTPFFTPKRPRASPGDVRPGGPKRHKDVRVTGAKPPPEATDVVNSHTEWQVVGKKNRKKEKASKKKPPEKRKVVRTRNKSEALIVKASDDSYAEVLRAMRMNPDLKELGEDVQKVRRTRNGEMLFELKRDPKAGSISYKELTEKALGNKVEVRALCPEATLLCKDLDEITTEEEVKLALKEQCELGEVQMTIRIRNGPDGTKVASIKLPVDAANKALRVEKVCVGWSVCPLSVSQQPDVCFKCLGFGHFARNCQGPDRSKLCRRCGEEGHKAKDCSKPPKCLICAATGDNEHPTGGSRCPASKRARATKSQWR
>Waldo-1_AAe_pol#LINE/R1 2118-5120 [Aedes aegypti]
MPSLQTSESNEVPVEVVQINLNHCDTAQHLLRQSVAEHRCDVAIISEPYQIPPGDGNWISDGTKTAAIWTVGKYPIQEVVHCADEGFVIAKINGVFICSCYAPPRWTIEQFNRMLDKLTEELTDRRPVVVAGDFNAWAVEWGSRLTNPRGSSLLEALAKLNVDLANDGTTTTYRKDGRESIIDVTFCSPGMIRDMNWRVCEDYTHSDHQAIRYRFGRCLQMESSGAQIYERRWKTEIFNKDVFVEAMRRENNLVNLSAEELTAALSRACDATMPRMGKPRNCRRPAYWWNSTIGDLRAHCFQARRRMQRASNNVEREERRLPYRAARAALNKAIKLSKKACLEELYRNANENPWGNAYKVAMAKMKGPAIPPDRCPEKMKVIIETLFPTHEPTVWPPTPYDEQDVHDEETRVTNEELVVVSKALPVKKAPGPDGIPNLALKTAIQENPDMFRTTLQKCMEDGNFPDIWKRQKLVLLPKPGKPPGDPSAYRPICLLDTVGKLLERVILNRLTKYTENENGLSNMQYGFRKGRSTIDAIRMVVETMETAQKQQRRGNRYCAVVTLDVKNAFNSASWVAIADSLHRLRVPKYLCQILKSYFQNRTLIYETDAGIRNLLVTAGVPQGSILGPTLWNVMYDEVLKLNLPRGVKIVGFADDVVLVVIGESREEVEVLATEAIDAVENWMREKKLALAHQKTELVMISNRKAVQNVSIMVGECIINSKREVKHLGVMLDDRLNFNSHVDYVCNKATKVISALSRIMPNNSAITSSKRRLLASVSTSIIRYAAPAWSAALKTGRNRAQLNRTFRLMAMRVASAYRTISSHAVHVIAGMIPICLLLEEDSECYRDRATGRGRNRARANTLSKWQQQWNNAEKGRWTYRLIPNVSIWTTRAHGEINFQLTQFLSGHGCFKQYLHRFGHARSPLCPECRDIEETPEHVVFTCPRFAQQRSEMTAIVGDDVNVENIVLKMCSNEDKWNAVNRSVVQIMSTLQRTWREEQRQMT
>Waldo-1_CQ_gag#LINE/R1 451-1926 [Culex quinquefasciatus]
MKTSETNQQKGPDAPQASENTEVEEDANVEMAGGESNGGDTAGGVASAFRGSGKVLRSPVLNQAAASSQQIGVIGEETPKSSLLNFAGSTPQDGVLLGRTALQEVRRRVNELFDFIKDKNNVHTRIKQMVNGVKAAMNAAERENNSLVVTRNSLKLRAERAEETLNAKLEEEALREKEPKTPPGPSSKRDRETPGEEEDAKKQKQGNGDSPDPAKEPEPTPGKEKEWEKVKKKKRKKKGKQNEDTQKPKFRRERNKGEALVVEVKEGVSYADLLRKVRTDPELKELGENVVKTRRTQTGAMLFELKKDPAVKSSAFKSLVEKAVGYESKVRALSPETTIECRNLDEITTEEELEDALIVLLDDRTTPMAIRLRKAYGGTQIASIRLSTPSASKLLETGKVKVGWSVCPLRPVPRVTQQMTRCFRCMGFGHQARNCDGPDRTNSCRRCGREGHMARDCKNQPKCVLCKEGDGNSHATGGFNCPVYKKLASGKK
>Waldo-1_CQ_pol#LINE/R1 1929-4895 [Culex quinquefasciatus]
MEVSQVNLNHCDTAQQLLWQSTAETGCDVAIIAEPYRVPHDNGNWAADTARMAAIHVMGRYPIQEVVSRAFEGFVIAKVNGTFFCSCYAPPRWTLEQFQQMLDSLTDELIGRSPIVIGGDFNAWAVEWGSRCTNARGHSLMEALAKLDVRLANRGTSSTFRKDGRESIIDVTFCSPRLAADMNWRVSEDYTHSDHQAIRYSIGRRAPVPDRSSRSYGRKWKLQYFDEGLFVEALHWCDGPQDLSADVLTAQLVTACDTTMPRRLEPRNCRRPAYWWNEELGTLRASCLSARRRVQRARSEATREECREEYRSAKAALKKAIKCSKTNCFKELCQDADANPWGSAYRVAMAKIRGPSMVAETCPDKLKVIVEGLFPRHDPTTWPPTPYNDEGGSNAEGHLITNEELVAVAKRLKVKKAPGPDGIPNFALKSAVLAFPDRFRTVLQECLDEGHFPDPWKVQKLVLLPKPGKPPGDPSSYRPICLLDTLGKLLERIILNRLTKYTESEHGLAARQFGFRKGRSTVDAIRKVVEKADEARRKKRRGNRCCAIVTIDVKNAFNSASWAAIAAALHKMKVPDYLCRILKSYFENRVLVYDTADGQKTVVVTAGVPQGSILGSALWNGMYDGVLTLGLPNGVEIVGFADDIVLTVTGENVEEVEVLAMEAIAMIENWMLEVKLRIAHHKTEMVLVSNHKKVQQAQIHVGEHVVHSKRALKYLGVMVDDRLNFNSHVDYACEKAAKAIMALSRMMPNNAGPRSSRRRLLASVATSILRYGGPVWWTALGTKRNRALLDRTQRLMAMRVASAYRTISSEAVGVIAGMIPIGITLEEDTVRYTRRGTRGIREAARAESLARWQREWDTTEKGRWTHRLIPSVSTWVSRRHGEVTFHLTQFLSGHGCFRKYLHRFGHAESPLCPDCVDCEETPEHVVFACPRFEAARSEMLAIIGADTSPDNVVRRMCSDIAKWNAVVGAVTQITSALQRKWRDDQRRND
>Waldo-2_AAe_gag#LINE/R1 815-2338 [Aedes aegypti]
MGSQGRLLTTGGDSGLEGGPLSMEVNNINVGETANPFAKSGLPRSPPKQCQQQELEQQQLEHQQSEDELHEQRTREQERRDKSQSEQEQRERQQQHQLQSAWKLPPRQSKVEAAKTVVDELREFVDKRHNVHKDIKDLVARIQGTLGSAVKDWRKVMQRIEAVETELAATKKALAAAVVQPEKTGIAPRKDSKGKERSAGIGTTPSFTPKRHRSSPGDERQAVSKKPKNVNPKPADEVLRGGPGDIPWQEVRNKKKRGKQESARKQRPIRKKAKCEAVVVKTSEDTYAEVLRAMRTDPQLKEFSADVQKIRRTQTGDMLIELKKDSVNKSSTYKELTERVMGEKVQVKAMCPEVTLQLRDLDWITTEEEVRTAIKEQCDLETVQMTVRLRRAPLGTQAASIKLPVDAANKALEVGKIRVGCSVCPLKISQRPEGCYRCLEYGHLARNCEGPDRSKLCRWCGDEGHKAQDCNNKQRCLICKDKSRNRHATGGPKCPAFKQARNSKPQWR
>Waldo-2_AAe_pol#LINE/R1 2326-5343 [Aedes aegypti]
TAVEVTQLNLNHCDTAQQLLWKSVSESKCDVAILAEPYRVPAGNGNWIADKAKTAAIWTMGRYPIQEIVFQADEGFVIAKLNDVYVCSCYAPPRWTLDQFNEMLDELTDKLADRRPVVIAGDFNAWAVEWGSRLTNPRGRSLLEALARLDVDLGNEGTTSTYRRDGRESIIDITFCSPVLTGGLNWRVCDGYTHSDHQEVRYRIGGRTQCSQRASTPHEQMWKTKRFNEELFVEALRREEQVLNLRSEELTAAMVRACDIAMPRKVEPKYRRRPVYWWNETLGNLRKRCLQARRRMQRAKTDGEREERRVTLRAAKADLKREISLSKRTCFKELCRDANANPWGDAYRVAMAKISGPAVPAETCPEKLQIIVDGLFPQHAPTVWPPTPYGQEGEERAIITNEELIEAAKKMKPKKAPGPDGIPNVALKAAITANPDMFRTSLQICLDEGHFPAQWKRQKLVLLPKPGKPPGEPGSFRPICLLDTLGKLLERIILNRLMAFTEGERGLSEWQYGFRKGKSTVDAIKTVIDTADKARTKKRRGNRYCAVVTIDVRNAFNSASWEAIAVALHKMKVPDYLCKILGSYFENRVLSYSTSEGQKTRSVNAGVPQGSILGPTLWNAMYDGVLTLRLPTGVKIVGFADDITLVVIGDSLERVEVLATEAVDAVENWMYEKKLVIAHQKTELLLISNRKVVQKAEITVGEHTIASKRELKHLGVMIDDRLNFNCHVDYACEKAARAVTALSRIMPNNSAICSSKRRLLSSVATSILRYASPAWGTAMKTKRNRVKLSSTYRLMAMRVASAYRTISSEAVCVIAGMVPIGYVLEEDKECYEASSTRGARKIARADTMVKWQREWDTAEKGRWTYRLIPNLAKWVSRSHGEVNFHLTQFLSGHGCFKKYLHRFGHAESPLCAECPVVEESPEHVIFECPRFAAERSEMTAVCGADVTVDNVVDRMCSDEVMWNAVNMAVTKIMSLLQRKWREEQAGEPEVSLQPESPNRPRHPTGR
>Waldo-3_AAe_gag#LINE/R1 891-2339 [Aedes aegypti]
MEESIIEIEEGAANPFAKGGLVRSPPSQLGQQQRNQEEQQVQRQLQQQQQQQPREQQQQLQQQQQAQVSAWSKVPKLPRVVAAKKLVDELHEFVDKRSNVHKDIKTLVLKIQGTLGLAVKEWAAVAQKVESTEKELSAAKTALEIRQVPIQQTAMPITFARETNAKRDKSQRTESVPFTPKRPRASPGDARPGGSKKHKDTRVNESGPANAATTKEGNDTPWKIVKAKNRKTKTKSRSEKQSLFKGRKRGEALIVKASDDSYEKVLRAMRTNPELEQLGADVRKVRRTRTGDMILELKRDPMASSSSYKELAEKAMGNTVEVRAVCPEAVLECKNLDAISTDDDVRVAMKEQCMLGEVQMQIRIRKGPSGMLIASIRLPIEAAVKALKTEKIKVGWSVCPLSVSQKPEACYRCHEYGHLARFCKGPDRGNLCRRCGEEGHKAQACRKPPKCMICANGDNNNHVTGGLRCPAFMKATATKPQWR
>Waldo-3_AAe_pol#LINE/R1 2294-5389 [Aedes aegypti]
MPGLHEGDCYQTTVEVIQINLNHCDTAQHLLRQSVAEYKCDVAIISEPYRVPAGDGNWIADNAKSVAIWTVGRYPFQEVVHRADEGFVIAKINGVFFCSCYAPPRWSIDQFNEMLDKLTEELTDRRPVVIAGDFNAWAIEWGSRFTNSRGSSLLEALARLNVDVANDGTTSTYRRDGRESIIDVTFCSPGLSGSLNWRVSEEYTHSDHQALRYNIGSGRQLEARAIPSKERRWKTSQFDKEVFVEALRLERNAQHATANELTAALARACDATMQREGKPRHGRRPAYWWNSTIADLRTSCFRARRMMQRARNDAERADRRPAYKAAKTALNKEIRLSKKACLEELCRNANSNPWGDAYRVAMAKLKGPAVPPDRCPEKMKTIIEALFPRHEPTSWPSTPYGAQDNDEEEAQVTNDELIAVAKALKTRKAPGPDGIPNVALQAAIQENPDMFRIVLQKCIEEGNFPDIWKRQKLVLLPKPGKPPGDPSAYRPICLLDTVGKVLERVILNRLTKYTEGENGLCDMQFGFRKGRSTVDAIRTVVEAMDTARKQKRRGNRYCGVVTLDVKNAFNSASWAAIAESLHRLEVPEYLCKILRSYFQNRTLIYETDAGKRCTTVTAGVPQGSILGPTLWNAMYDGVLKLSFPRGVKIVGFADDVVLVVIGESLEEVEILATEAVDAVEEWMRGKKLVLAHHKTEVVMISNRKAVQKARISVGQCTIDSKREVRHLGVMIDDRLSFNSHVDYACERAVKVISALSRIMPNNSAISSSKKRLLASVSTSVLRYAGPVWVTALQTKRNRSRLNSTFRLMAMRVASAYRTISSEAACVIAGLIPISLQLEEDSECYRDRRTRGIRKRARDETMRKWQQQWDSAENGRWTHRLIPCLSTWVNRKHGEVNFHLTQFLSGHGCFKKYLNRFGHARSPLCTGCGDVDETPEHVVFECPRFEHERAEMTSVVGNDVNVHNIVQRMCADEEKWDAVNRTIVQMMSLLQRRWREEQRHSTQRTAHGSESLGQPESSDRPWRLTSQPVEESI
>Waldo-4_AAe_gag#LINE/R1 891-2285 [Aedes aegypti]
MEQIIDLDGESSGGNEDAIVFARSGKMQRSPVIPQTVAASTSRCSTPSELPGNQRDAGFLSQVLTPKSGSSTAQDDRQHDKSELSEVKRKVNELYEFVKTKNNVHLRIKQLVTSIKSAVTAAERGQKELRSRAEKAEKALTSVNATAVEQETPRSNPTTRTEKRTRDTPGEEEDPKKQRSGNECVSEQNGSGWRTVKGQKEKNTARKERKRQKKEPKKKEKQRSPRERFRGDALVIEASDKTSYAAILRRVREDPELKELGENVVRTRRTQKGDMLFELKKDPSIKSSACRELVAKSLGNEASVRALSQEAVIECRELDEITTEDDVRGALLSQCNLEEAPQSIRLRRAYGGMQIATIRLPVAAAKKLVEAGKIKVGWSVCPLKLIPRETNPVERCFKCMDFGHRAINCKGPDRSEHCRKCGEKGHVGRDCLKSPRCMLCKVEEGNAHTTGGFKCPKYQKAKAGQ
>Waldo-4_AAe_pol#LINE/R1 2288-5314 [Aedes aegypti]
MMMEITQVNLNHCDAAQQLLWQSTTETKCDIAIIAEPYRVPPDNGNWVADRAETTAIQVMGRFPIQEVVERSYEGFVIVKINGIFVCSCYAPPRWTLEQYTQMLDVLTDKLIGRTPVIIAGDFNAWAVEWGSRLTNARGYSLLEALAKLDVRLCNDGLASTFRKDGRESIIDVTFCSPSLVTNMNWRVSEEYTHSDHQAIHYCVGQRSCAVWQRRNGERRWKTKHFDKDLFVEALRAVSDAPNMDAGELTEALARACDATMPRKLEPRNQRRPAYWWNDRLSTLRAACLRARRRVQRARSEASMEERKVTYRLARAAFKREISTSKTNCYKELCREADANPWGNAYRVVMAKIKGPVTPAEMCPDKLKAIVNGLFPTHAPTAWPPTPYADVDEENAGIQVSNAELITVAKGLKLNKAPGPDGIPNVALRAAILAFPDIFRTALQKCLAEGCFPDRWKVQKLVLLPKPGKPPGDPASYRPICLLDTLGKLLEKVILGRLTIYTEGENGLSKRQFGFRKKTSTVDAVRAVIACAEKAAKQKRRGNRYCAVVTIDVKNAFNSASWEAIAAALHRMRVPGYLCKVLQSYFQNRVLVYDTNQGRMSIEVTAGVPQGSILGPTLWNMMYDGVLTLSLPNGVEIVGFADDVVLAITGETAEEVEMLTAESLDTIESWMTGVKLQLAHHKTEVVLVSNCKAVQQLEINVGGHAIPSKRSLKHLGVMVDDRLNFNSHVDYACEKAAKAANTVARIMPNIGGPRSSTRRLLATVSSSILRYGVPAWAAALGTKRNRDKLAGTFRLMAIRVASAYRTISSEAVCVIAGMIPICITLAEDIACYQQRDTRNVRNTIRLDTMARWQQEWDNSEKGRWTHRLIPNVSVWTTRKHGEVNFFLTQFLSGHGCFRKYLHRFGHAESPHCPACPNIEETPEHVIFDCPRFRDIRSEMMPETASVLNPDNIVQNMCQHESTWNAVNRGITAIMSLLQRRWREDQRAPGRDRSRLDPPSGTRPSRAGVA
>WaldoAg1_gag#LINE/R1 gi|28569860|dbj|BAC57903.1| gag-like protein [Anopheles gambiae]
MRIHVPCAVSVLGCAYTQRTKCAACLDSPDGMNGNESLHPRPLGSALKDIGAFFGRSSKTPRSPPNDNVQGSVSPAVDVVEVMPEEQTSASMECQETSHPIKEQGFEVSASKLQEALMVARELHTYTKDRNNVHAPIKKMSVSILSALSCIERELLTMKLRAERAEKALREVQSEPPETPMTGKRSRKARTPEEAEDAKRAKNDAPSCNRPDAEYSEGVKNSENGELWSTVVSKKAQRKKKMGTMAEGKQTRAGEHNGPVKPVPRRPKTEAILVETTEVSTHKDILRKLKADPELQSFGKQVVRIRSTKNGGLLFELKKSDQTECESFSGKIQQAIGEAGNVKSLGQMETVEIRFIDEETEAADVERDLRNQITGLEGYKVEVTMKTSFSGMQTALVKLPVKLVSVVTGAGKVQIGWSVCPVRINIPSRRCYRCWQTDHISQDCCGPDRRDCCLRGGEKGHFAATCRLPPRCVLCPDGSNAHHSSGAFCPAAKKTAPWK
>WaldoAg1_pol#LINE/R1 gi|28569861|dbj|BAC57904.1| reverse transcriptase [Anopheles gambiae]
MEVAQINLNHCEEAQALLSQVMVEEIGDIAIVSEPYSAPTGSSSWVADKTGNAAIWVTGTIQRVVSNTFEGFCIAEVNGVFFCSCYAPPSWELERFHVMLDNLVAELDGHRPLVIAGDFNAWAVEWGSKRTNSRGDAVLESFARLGVTLGNAGTTPTFNRNKRTSIVDITFCSTTLSERLNWRVSDALTLSDHNVVRYAIIQGHRLTSSSAHGSRVGGRGWKTESFNEDFFKELLAFGDFGEAVSASQIVIALTKASDGAMPRRKPPNGATSRRQPVYWWNASIKIQRAECVAARRKMQRERCPEVKQQLRIVYIAARSELQRAIKASKRQHFLKLCDEIARKPWGLAFNTLMNKVKSSEPVEQCPVKLKSIIETLFPTHPTINTPETDPVPITRQEIINLANRLKCGNAPGIDGIPNMAIKAAMLAYPDVFKKRAPPNLSPTINTPETDPVPITRQEIINLANRLKCGKAPGIDGIPNMAIKAAMLAYPDVFKNVLMNTLTTGQFPSMWKIQKLVLIPKPGKPPGHPSAFRPLGLVDNLAKVQEMVILDRLTKYTEGPHGLSDRQFGFRKKRSTVDAILAVLEKGIAAFQRKRCGARYCALITIDVKNAFNSASWEEIAAAVERMKIPPHLCRLSRNYLDGRVLQYDTAEGVKTNAIPAGVPQGSVLGLTLWNVIYDGVLTLALPHGVEITGFADDIAITVSAVSIEEVEMLATDAVGRIDRSMRDAKLVIAHAKTEFIVISSHKVHQKASIMAGTVQVESTRSLKYLGVVIDDRLKFKSHLEEACKKVMKAINALAAFTPNIGGPCSSIRRLHANCAISVLRYGAPVWAHILKEKQHQNTVNKVHRKLAMRVTSAYRTISYEAVCVIASMMPLCITLEEDSKNFRKSRAGESFTETAKKASRQASMRQWQNEWSNSLNGRWTYLLIPDVGAWLDRKHGDVDYFVTQVLSGHGCFRSYLHRFNRASSSRCPACKDEDETVDHVMFHCPRFAEERLQLNESCRVEVGCSNLVQVMLQHTDSWEAAATTMRLILTKLHQKWKQDQQLGDI
>WaldoAg2_gag#LINE/R1 gi|28569863|dbj|BAC57905.1| gag-like protein [Anopheles genus]
MSGNESLPPRPLGSALKDIGAFFGRSSKTPRSPPSDLGECSASPTVEVVASTSVDSAVVEAVTGEENVMAAEDSVTSQPVESFSSSKEPALVVGGSKLQEALKVAGELHAYTKDRNNVHHPIKKMAVSILSALACVERELMTTRLRAERTEKSLKEALEGCSQTETPVNGKRGRNLRSTEEADDAKRAKNDAPSGSSLVASAGCGPEMNETKGSWSTVVRKNRRKPKESVIPDNTGEKQVHPASTREALPPRRPKTEAVLVAPGENITHVEILRKLKADPELQAFGKKVVRIRGTKNGGLLFELGKSDDDCGVDYAKVVQNSIGNNGTVKTLGQMETVEIRYFDAETQTSDVEKDLRDLFTELDGVTFETKMTKSFNGMQTASVKLPTKLATLVAARGKIRIGWSICPVKIQIPKRRCFKCWETGHFSRDCKGPDRTDCDAVKQGILPKHASNLPDVSFVHRVQTCIIPAAFSVQRASRNRHGDSSVEPEPL
>WaldoAg2_pol#LINE/R1 gi|28569864|dbj|BAC57906.1| reverse transcriptase [Anopheles genus]
MEIVQLNLNHCEEVQDMLGQLLIEEKGDVAMLSEPYRCPSGVNNWVSDSTGTAAIWASGRFPIQQIISRHGEGYVIAVINKITFCSCYAPPRWDLEKFEEMLKRISDEVYDVNPIIISGDFNAWATEWGSKSTNARGNAVLEHFSRLNLVLVNVGFCPTFVRNSRTSIIDLTFCSPALASSMNWRVSNAYTLSDHRVIRYTAGSKCHRVAQGSGFPAWKTQCFNEELFIEALRFGDFSNTSSALKLASAIANACDTSLPRRKGGPYPRRRAYWWTTEIAQCRSHCIEARRKMNRAKSSEQREDLRRLYILARSNLKRKIKASKRRCFLALCDEVENNPFGAYRTLMGKMVGQDLPRERNPTALKTIIEQLFPNHEPQTPRDISRNPDVEPVSISADEIQKAADHLKLGKAPGPDGIPIEAIKAAIKAYLEAFLSVFQNCFDTGFFPIPWKRQKLVLLPKPGKPPDDASALRPLALIDNFAKILEILILNRLVVYTEGEHGLSDRQFGFRKGRSTGEAIAAVLKKRRSALLKKRTGNRYCAIVTIDVKNAFNSANWEAIHAALSKMMIPPYLCRLLRSYLDHRVFLYDTALGIKKMSLTAGVPQGSILGPTLWNVMYNGVLTLGLPPGPEVIGFADDIALTVLGESIEEIELLTSDSVSRIESWMQQMRLEIAHKKTEFLIISSHKTVQSGSIRVGDERIESIRHLKYLGVIIDDRLSFRKHVEYACNNVFKAAISLIQIMPNIGGPKSSWRRLLADVAFSRLRYNAAIWAHVLVLKENRQLANRVHRLLAMRVVRAYKTISHVAVCVIASMVPICLILAEDSECCSFSGVSNAGLSRSSAKQLSMRKWQSEWDCSTKGRTTHALIPNIAAWTSRKHGEVNFYMTQFLSDHGCFRSYLHKYRHASSPDCPACVSIVESTEHVLFHCPRFAEERHEITVKCGTTINGTNLTELMLKNAGTWEVIANGMRSILLKL
>GENIE_GT_gag#LINE/R2 15-1199 Not matching other gags yet. [Girardia tigrina]
LQNNNSTPIVDNSSRAQTEHVISNHFVTQDSSNSDSNIIDRDRNLVDLDASITSPTIIQPEDSKISEDEDFILVNRKKSKNKKKSKKTTENKNEIPIQKSKDKKKKSKINTEKLTENITTSEIPLEIAPSIPLPSASTSGSQQPANPPEDATLSDTDLFLTQDDPDSLILSGSTQPTFVDLNPSQQSELPSNTDSQRFEAGETPKIITSYRDDLFYSTVLHYNSDTGYGISVDNGEQRFRILARNLVRKTKDKFPSLYAGQVIRHTVFFNHFNQAYYANNITDSKGNLIEFSDDKPFQSIPTDPKTELEQIRRERQHLVDRALRHNQLRETYILNKLNNNNGGGGEHLKRKKIKVNTDDVSSNDGDRKHRRQEETSDNGAAIPAQSNNQITPLN
>GENIE_GT_pol#LINE/R2 1199-4639 [Girardia tigrina]
SSTEVGELVEQSPAPLQSPQFSNNYNNLNINNNLYYSLNTFNQSNNLCCLVNIEFFPTQHLLGDIVNSGCINYMNNYNNFDNINLYINSNVLSYNNYNHSFLASPYTTNITEHADINMHVQEVNMQQDNNTQHAITQQVSLQATSLQHTLDEMIVQFNTAVRLKKKHKVAKIFRGHNHRKDLPTLPAREQYKTKPKLAIREVLHRKTTATSSPSENAIKAFFSSYSRPAELFTGQELLESSWFPVHPEDDFEFRIPGRDQIAKYIKFASKSAAGLDWITYEDIKLGDPSGEILQPIFEYIVQNNICPSEGKASRTIMIPKPGKSDYSDPSSWRPITITSAVYRLLMKYLTWELYNWILLNQMLSRSQKSLGKFEGCHDHNAMLNMLIQDVRRQTNPSNPINKNKRLYIVFLDFTNAFGSVPLDTLMYVPQRFGLGTSALTLIKNLYLDNYTNVTCGESKIENVKLNKGVKQGCPLSMLLFNIFINIIIRAIEAMPDVHGYPLGDMDIRILAYADDIALISDSHKDLQEMVYKAEYIGRILGLLFNPSKCALMDIPHDKKRTPPILVNGEMIKCVGKADPYKYLGTFRSWFRKLDIKELLQMMMDETKLITESNLHPHQKIHAYETFIHSQLPFHLRHSRIPFSDFITNRKTNKTTNNSNDSEKSIQKAYDPESGQLFLNTFALPSGCAKDFFYITKDAGGPQLTSGLDEYLIQSIMYIFRLLGSEDPTLNSAIKHDLISHLNLKGFVNINFSQAISIFNSNFTDRTDHFSHLSRTEWARLQLARKKLKSTLAIQTNVCLINGHLVLTLSLENNVLLIDSKEKGDVKKIHASLMGFLRLAHLIRLQKHGWSKLLFSATTHHEILNKRILNGHVPYKIWYFIHRARLGLLPTKLFSVSNLCRKCGGKKETMSHALVNCPMMQTLINERHDALEISLVQILSSKFQGTVIRQKTYVNELRPDITMESDTQYYLVEVKCPFDTKMSFELRTQQTTDKYNIIIEILEDVHPGKEVRLVTFIVGTLGSWGPQNSDFLRDLGFSKDEIDQVKTRLMLQNINSSCEQWKRFVQYAPTITPGPIPDAESEDDQGTSDNGPTAATVQGPVIGDEEEELQIYDSGLDESSDDEPDPDDAELLFTIDIEQYLNSVITD
>LIN1_SM_gag#LINE/R2 13-2356 via tfasty with LIN3_SM_gag, 1 frameshifts. [Schmidtea mediterranea]
MTQSLPIVQDQFASNQLNNSSSELVIFKTILQNQIIFSQQLLDFISQRSNGQNQLPLSAKPIHPDLSLDLVSKKSTRDNQLPPSTNAMDPEKSFDECDKEALSNKILPLSAKLMELEEHILRMNSKFDIVLNKLSNSDFNDNNCNLNILNKINVDNNDDLNISSNYNLVSENAENSPLNPINTQLKNFKVTKTKDALNMKRFNCNYLSRILNKNERRNIINNYPCFISLLKKKNSKTKFDLINYELSLINKSKLNFKIKDCDSLFYRNGNLCISIKLSEIKKTDATKKIITKSTNFQNKNKTIISNLINTDNYCSKLIKAPLAIKKFLFVFSHKLAETVSIKNELHKRAVINKTLDNLKFQKQLPYFLVKSDLKYADGDFIMKDLLTSEDTDNESFNIGSSNLTRSQLDKLYFDFPEIKEMFFTEGMHKDSDKISSLINHLKVNKEFPKDISFSGGKFITNQKSNKIEPDLSNASDVMFNFGLFDLFKISKDDIELERLISLPASSNKIVEIIFHLNYLNLKGNIKYFSNITYGTYVLNYFRNVLLLHSIIDSEKCNSLIIDTLEIWGSELTDQIPSTSYFKFSCQEKLIKYKKWLLNGEIDKLKNIISPLTIKRINNLFNLFNKTISEKTNRLSMIDSLLTYINDFRPERDDNVTVTAKRLLYFVIRDKKKFLLKNRDDFQISMKCRKNCTKEMSLIIFDLIESLENLITYEEHVNSVELTDKIDNFNKGIVLTLTNIEKKVVLPVDIDEEAVSSLELKITENKKMMTRQNLKVSKAMSK
>LIN1_SM_pep#LINE/R2 2360-3049 [Schmidtea mediterranea]
RYVPASVLESATISEETDAECTKLKNTKLRDPKVWFTDDDIDQYLERHISNPTFAHLPCFIISILSSDIKENIISIPDAVFKAEVILCPLNINNAHWILFVYSKSLLESYFIDPIFANRNLFKNKQATLKINIALNKIFKLQVASSCHPFQNLIYQENSFDCGPFICAYAILISQGLDTFPNNFIDGIRREVHDFQIFGSNKVSQVIGGGLPKNNLMGINFKKSNCAYS
>LIN1_SM_pol#LINE/R2 3009-6476 (probably pro-pol) [Schmidtea mediterranea]
WESILKKAIALTLEKQKRNINNSINIKPKFQKSCVSFLLSKWFKSNTNILVLSPDLTINLIAQNNNYIIENVNFRQFKDVQHVISIIPNENYWCLLLYSTRRMTCNIFDFRKTDISDRLTEIGGNFTDYLNSFFLSMKIKFQINHGILHRCFISDDPTFHATAFIVFLEKLILDRDFQHDKIYKLLDDINTKECVEISLNLNLINGKITDSILIKYFNNLSLSTDFVLLGFTMCTAILDDCTHYLNEHLNYKCLQNAKVVFAIFAPPKSRETLMVIDYNTDEHYFLDPTTLDVSLNYTFICKVLVTKINEIRNSRGCAIRAGKCPHDVRGSGLLSKILICAFINNYAHDMSLENINLREIARIINSVLPIVSEINNKDKEKILTKAKETIKFDLQQRKNKVFELIISFENADVNQIVESIIRQIPHLNNFTEIKSHEPYLGSKQNSNIISKYKSRSEFLINMKLTFYKIINDLPVTVRPEIQDILNQFSHEDPVSNSWNKILKDCRSTTNVLNLVDILPFEVIYELKRADNTSPGIDGIQYKDLALLDPEGILLSFLFNKIISSKIIPTSWKTFKTILIPKPDKTDNYDKVSSWRPIALLSVIYKVFASILTTRLTSWVICNDILHIGQKGGSVHEGCVEHNSILSSALEHSKYSKNSPLAIAWLDIKDAFGSVPHDYLWSVLKTIGVSEEFITIVKLLYTDTQSFYSCGPIVTPNLSIKKGVKQGCPLSMILFSIAINPVLEAISRSCIEPFMIGDSPVQVLAYADDIALVANNVENLQKIVDVAVEAATEIGFEYRPEKCGYMQLPRVNINGEILINEKEIKKLLSKEFYQYLGVPVGEDNDQSPYAILDKVVSDTNKIADSGLFGWQKLKAYKIFIHSRLTFAFRTREIKTMALSASQGNTNSCGNNSSKLRGHLRRILNLPHNSETVYLYNSTENGGASCVDLLDEYHTQTIVHFFRLFTSNCDYSRKVNIDSLKFVTGPRLGIKEPTLQQSFDWINGAETKLNHGGRKTRFQRARTSIIYFKREHSISVSFHIVKEQVFLYLITKSHGTFILTTKFRKAISKIFHSALYDSYMQKWQLSNKSDMIAAAIKLSPQINKAIFKSKLGEFAWNFIHRARTNTLNINAKPNRKGDSRLCRRCEKEDETMSHALQ
>LIN2_SM_orf1#LINE/R2 7-2222 via tfasty with LIN1_SM_gag, 1 frameshift. [Schmidtea mediterranea]
MKIEIGEFAALFQRFFEQLNAKSKQEEEFRNESVPGSRVPSEDMPVFQINERFHALERSNELLNGKMDSIVNTLNYLISGLNGNFDNNNKLNCICKTNHVKEPLSIVKTNLVSELPSALLVQNKVPCLKLSEEDLIRKIPTKIVPSKKVSKKTIEHTSRVNFSLFVRVLDSNERQQFFKLFPNLLALLKSKESEKKSEVLNIELTKISKKDNPLNIAGFKNFFFRNNNICVTIDFYNSSKVKSKITKNLKIKTSLINSKIVKNYNTNKFIPASLSIKKFLFVLSDKLAETTNISNVTVREEQINKIITLLKIKNSLPDYLVKSQIKYKDGDFLMLDLLNSCEIEGELGQKITELSRSQIKELFNSFPEIQELFFIEKKGIDENPEKLINLINKFKIEKTFPQQISFVGGKFVKIDKLNDSQFPQVESESDIMFNLGLFSLFGLSEYDNILNSLLCQPKSPEKLVDIIFHLNYLNLKGNFDTSTNGTYENYVQNYIVNCLLMHSILDLETCAFLNLDNIELWAPKLIELIPSSSHYSSSCKEKLLKLKQWKLSGEIDRIHNIICPETIIEINNFLGVIDQSYTTKSDQLKFLTSLGEKINNIEIDNDVDDLVKAKRMLYFIIRDKKRFLNKDNFNYRIPFNCRKICTLKMSDFITKLIQSNELFEEREAVVDNNIDVSPNENLNILIVEPVNPTPDTVIVGQMDTFPTDIDETEPVTIDKPLKKITSKQAVKPKAQKSK
>LIN2_SM_pep#LINE/R2 2223-2900 artifically broken from (pro-)pol region in same frame [Schmidtea mediterranea]
REVPASVSISVPISEETDADSTIINYFFPERDPKIWFTDDDIDYYLESHIGNPNFAPVKCFIVEILSSNCKDEIFPMPDNLFKAQIILCPLNINESHWILFVYCKLTKISYFVDPILRKRHNLINKSSALKITMALNNLFDLKAAVTFHPHDNLVYQDNNYDCGPYICAYAMLISQEWQTFPNNFIETIRKNVHRFQTSKFQNPPKVSGGGITTLPIFKRFQNVTR
>LIN2_SM_pol#LINE/R2 2901-6776 (probably pro-pol) [Schmidtea mediterranea]
PPKVALPYKASLQNENSCVPSLIKEWFSNKNYITVLSPELTLNLIAHNNQFIRENVTFRQFTRVKYVIAVIPNNPHWCLYIFSPVFEHSYILNFQGRVLNERLVSIGESMTDYLNKFFISTAKVNFIVNHNQTHFSFRSEDPHFFASAFIEFLERFFFGNILSFTKINETLKSFKLQITNEICKNLNLINFSINDEIITKYFKNLNLPSNFIFLNSAMCTAIMDDCTRYLNDFLNYDNIIKAQVIFAIVAPPKFREILFIIDYNTDEYYLLNPTTLLGNDNYLSTCKILRNKINEIRESPNRVLNLGECPHDIRGSGLVSKILFCSYMSNYANDLPLVGLNLRQIGNVVSSFLPIVSEIKKVKSLENNIINQNHKESENLKERKNKIDQLLIKVFKMNVDEIVDVILDQISIKTVPTHKPYLGNKERVESQINKSNLIKNFNSDMKTTVNTIINDVDVDVRPKYENIITNFEHKIPLDRTWDKVFKFCNRSDKKLKLKYLSNSEVLFELKKADNTSPGVDGIKYRDLVMLDPEGKLLTFLFNKIISKKVIPDSWKSFKTLLIPKPDKGDKYDNVSSWRPIALLSVIYKLFASCLANRLTFWINKNNLLHIGQKGGSRHDGCVEHNSILSSALEHSKYSKNSPLAIAWLDIKDAFGSVPHAYMWSLLRFVGVDEEFVTILERMYSDTSTFYSCGPILTPNIAIRQGVKQGCPISMILFALAINPVLEAVSRSKCEPFMIGESAVKILAYADDIALVSKSAYDLQRVTNIAVAIASEIGFEYRPEKCGYIELPLIETESQILINDIKIKKLASSEFYQYLGVPVGEETDQSPYDILKKVVSDTRKIADSDLLGWQKLKAYKIFLHSRLVFPFRTREIKTSALAKSNANNNLTVNITSQLRNCFRKMMSLPNHSEVCYFYNSTENGGANCVDLLDEYHTQTITHFFRLFTSSCEFARKVNLDSLNFVAGPRLGIINPTLQERFDWINGKEPKPRHSGKKTRFQRARIAIAFFKKEHDINIMFIVTKGQPSLFITSEKRGTFILTPDLRKTTSKVLHMALCDSYLSKWEKSCTSNFIASAIKLSPKINKAIYRGDISEFAWHFIHRARTNTLSINAKPHNKGNKRLCRLCHTEDETMSHIIQSCKIHLTLGSERHNDCLDLISSHLSKNSNLIVVVDHVCSLVPESKERVDLMITDMVRKKIFLVDMKCPCDTINNFALVDLLNLQKYDSLKMQIQDAKPDFKVELDTCIIGSLGSFPPKTPELLLKIGVDRTHLKGLLKDCALSNISHSARRWH
>LIN3_SM_gag#LINE/R2 71-2512 [Schmidtea mediterranea]
MDLLKSQIVSSEAIMDFISKTSLSTEDISDLMSKKNEKNLDGYKHVPSTFEDSISRTNEFILQEIHRLDVSFCNIVNKLDLVISFLTQNLNFNANSKLNLSNKKVNVEDSNLNLNNKLEIAKTLSLIGNAGLNLNNDKVTLENDLLISDIPVQVTDCEINNVIGNKSNLGQVYLDNVKLQHNEISNLQLVSKTSPNLNTYKKLENSSNKSTKNKVFSSKISNITSNNELKNNSKLFKALCKKEQQALFKKFPNLIKLIKIKESTDKSKNLNKELSFITKLINPLEIAGFEFFYRNNNICVCIDPFNINKPAVPISNKHTRGISIIKANIVTTCKKGFKFVSAPLMIRKFLFALSKKLAETATIKNEKHRGVQINNILKLLKQQNVLPDFLTKSQIKYCDGDFVMLDLFNNHISDAEIKSINNSELTRSQFHGLLISFPELHELCFVGNMSSFPDEISFVGGKFLILNKINTSENPNFENSSDIMFNLGLLNFLEMSKDDTEFRTLLNKPNTSEKVIDIIFYLNYLNLKNNLNYKTNGTYGDYALNYIRNCLLMYSIVDIESTSSLDPDHNETLISEMIDMIPSLSYYNSSCRERLLRLRQWKLSGEIDRIHNIISPPTINSVNSFFDLLDKTFTEKSNQIQLLCEISNKINNWNPDSSNVDEIKAKRLIYFAIRDKKKFLSSKKQSYRIHQTCRKICTSKMSGFISQIIDSLVLFIQEKADVNQVEQFTTINVQTSTESTAPVVQTSLCFINESKNLIVETPIVNIDNKVTETTNNLTTDIDEEPSHTLTIKNIDVKKMTTRKDVKLLKTTSK
>LIN3_SM_pep#LINE/R2 2513-3169 [Schmidtea mediterranea]
RYVPAPVSTPAALSDETDADCTFENFDFEFWFTDDHIDYYFESHIRNPKFAFLKCFVVSILCSNNSKDIFPIPSNIYEARVILCPININNCHWILFVYCKVSCNSYFIDPVFKNKRTFENNERAHIINSELNNKFDLQNKIIDHPYINLQYQNNNFDCGPYICAYAMIVCKEWYYFPVDFILNIRKEIYEIQSFHLIHNTKLSGGGISKDHFPQPSKR
>LIN3_SM_pol#LINE/R2 3139-7029 (probably pro-pol) [Schmidtea mediterranea]
RSLPPTLKAIETITLTQEKACVSTLLKKWFENNLEVMVLSPELTINLIAQNNIYIVDHVAFKQFKGIKIIIGIISNDNYWCLFLCSVCLGFSYIFDVRSSQNINGRLLGIGENITDYLNKFILEKTIIFKKSHTLFRFAMFSDDPIHHATTFILFLEEFISGNVVNRDKVIEKLVNMQSKMCDEVVVNLNLINCKITENILTNFFINLNLSENFIFLNNTMTTAILDDCTQYLNEFLNIENLMKAKIVFAIIAPPKARQILMIIDYNSDEHYLLNPSSLLPNFPYLCTANSLLTKINEIKETPELCKLLGNCPHDIRGSGLVSRILICAFIKHYALDLSLENINLRDIGNVIKSLLPTVQDIIKDSIKNLPDNKTNVKLKLDQRILLINENLLTLQNASVNEISNFIINEIRIRKETSVTKISRPYLGNKISKVPPPKTNFKSSFNQNMKTTVYNILVNDEINERPTIKDHISNFSHQDPLIKSYDNVLNFGLKSQNTLLLRPIIDKEVIFELKRADNTSPGIDGIKYNDIAILDPEGKLLTLLYNKIITENTMPDVWKSFKTLMIPKPDKGDKYNLISSWRPIALLSVVYKIFASILARRLTSWVNRNNLLHIGQKGGSVHDGCVEHNSVLSSCLEHSKYSKDTPIIIAFLDIKDAFGSVPHDYMWKILRHIGVGEKFTNTLKLLYTETSSYYTCGPIVTPNIPIKQGVKQGCPLSMILFAIAINPVLQAVTLSKVKPFKIGESSIQVLAYADDIALIANNTHDLQNILNIAFDVAREIGFEYRPEKCAYIQLPNVDTISEISINNIKIKKLLSKEFYQYLGVPIGEQPNQSPYEILNKVVSDAKKLADSDLCGWQKLKAYKTFLHSRLTFPFRTREIKISALSANVCNNTTKLRSHLRKMMSLPNNSEISYFYNSIENGGASCTDLLDEYHTQTISHFFRLFTANCEFTKRINIDSLKFVTGPRLGNNNPSLQDSFNWINKADIIQKHSGKKTRFFRPRTAIRFFEKTHNITISFEVLDDKPILRLTTALKGTIILTEFDRRLVSKVLHLALYDSYFTKWKNSNISNSSTFYLSPNINRAIFKGELREDHWKFIHRARTNTLANFAKPYIKGENRLCRRCHNQDETLPHVLQNCKVHLTLALNRHNDCLQQIVHHLKSPSLIVVVDHTCSLVSNSKERVDLIITNNEKKTILMVDIKCPFDSLVTFETVNKENLAKYDSLKKQIQAAKPSFTVEIFTCIIGSMGSVPPASYDLLGKMGVPFEKVAGLVKACAMSNIANSSRKWHYHVTGVLKSQ
>LIN4_SM_pol#LINE/R2 1867-5150 via tfasty with LIN2_SM_pol, 1 frameshift. [Schmidtea mediterranea]
LSQHHISIFMLTFATLPSTIFIDSFIGKAYINKNFETFFSAFPFHRYPNWNDLLWPMNPEKNLWILFYINKTSGIATIIDPTCENSTLKHQAMTSSIVSVLTTLQNIIEKTTIKVTEVPYPQCQLIKDSSFYICHFASCLVKNTPITLPNIGNVSDITKYSTFIKDLIIQTKTNNITPDDSLKEFYRIHEATNPKKYKTKHAAPNFLVNKDKKKLVFELRQGFDLRQKVTIGRILNPLSNISTTPSLDDLINNFSKEPKHMTNILHRETPILSPEYRSHTKINAEEMEKNFSQLDTSSSPGNDKITYADWRKMDPVFEYLTELFNQIIKNGRSPTAWKTFRTKLIIKPGKEHAPHEVSSWRPLAILDTTYRFFASIINNRLLSWIGVNNLLSRNQKAVGTPDGCAEHNTVISLAKEWAIRNGSDINIVWLDLADAFGSIPHNLIWHTLSRLKLNNTTINLIKEMYTDCFSIYECENKKTKQIRVTNGVKQGCPMSMTLFSLSIDFIIKNILIDHPLVINKHNISIMAYADDIVLISKTRTQMREMIKDIIKYTDMATLKFRPSKCGYFQLKRNHTDTSLKLYNENIPIIGEDNIYKYLGVDFGQKGKHNIDDTLELAIKDTEKLFNSDLHPTQKIQAYKTYIHSRLIFVFRNCHINHMILDSNRNKIVQHREKQMGFDQKIKRKIKDTLQDIHQNINNNFIYANIKMGGLGIVPSIDEYFIQSIAHLIKILNSTDRGMRDFIIKELINITQGRFPNQMSDIDLSLKWLNTEIKGDKYVHKTIFSKFHKSIRRLNEKFNIIIKIILVEERFELEIKGNNFATTIDIDSLKETSNILHDLTSEWYAEQWYLMTCQGHIAKTIGNNRQSAYLIKHNVLNDQQFYFLIKARNNMLSLNYNTHRVKESANTLCRLCNKEPETQAHIFNHCTQTCNARRNKHNNVMEKASEYLISKGFHVDVEKPPPGIETRLRPDLIIKSKRNKLIHILDIKVPYDHLVNFESAKEENYKKYKDLSLEIGKANNCHTTVSALVVGTLGSWDCGNNSTLAKIGLNRTEIKKLAKICMTTAVISSYRIYMDHVTNRINNISTQKLMPQALSA
>LIN4_SM_pol#LINE/R2 307-1866 [Schmidtea mediterranea]
MAPDQTTELKTAETAPDITFNKRDKHIFKEINRIIEHKTKQTTDNLTSDFLKQVDEQQKIIIETQQMIRDLNRKLDYSSPRRIMTNDTKFTTSHSENPNPPTTPQITDPHSKNSKNISQIYPGFNVNDLEFTPTPAQLNPCYDIDDVLFTPTPNQDMNSPIKCHQPSLNNSIETLSEEDDDIDIHKEKTPKNRNRIVDLDAQETTPLETYSPLSHTIDSSQSLFSQPKKKLTQSIVMQYPEMFSANEAPDLNGHFELYFALEPNVDRHDVANPNNAMTSQPPIISTTTVEPTPSEPIKNILLSNEQLITPNTRSPFLLRNRDPIFKLGSEGYLKCVVSNCKTGRKIGPLMLDKQHNHMHSYHQKSIKPTDTFECLICNRNKIKPTNISLKNIENHLTEVHKDREFPGTKEQYNDKKKILTFDMNEEGTLVCAYLGKKAQCDIYLTFNTDLNEINKHIISKHKKKTFDHENSVRCYCGMTIDIHHTNSHFISHKNNNTTIEIENDPPTHIPATNADIGTD
>LIN5_SM_gag#LINE/R2 8-2929 [Schmidtea mediterranea]
MPKKHSNSTGQKSEADDMEPMNCNSNLISEMNRLFQSFINQVMEKNTVQNNNRKSRSKSISRPNSKDNQKSKIIPKNKNNKKGFKIENHLRNDKNFNDLKECFYNHEKFYKNLETCDLNELIFKIFLLKVKINKFEFKISEFKNLKIEKKENKMMKNIEDKTTKSKNHVNFKNLKKNENDENKTKINPENQNSEILNKNNEDKTKNLKSFKDVLINGKNKELKKNKKDLNNEKVKNNELTQKNLSKIINLEKIRKWTDDFFNNLTWKFHKNIDVPETMETNTNLFNYLLIKFQLMQTKNLTPSRTIIEIKEEVSENDIKEMIDKYFNLFNNEIFLNFKNRFENLNYESFIKDFLYIIHLKIKTFLNLFKYLNQSNLINNNAKKIFRAHQARETNGRSSSTFGRLAKNHVIKEGTVTTLHSSSTCGRLTDHPDTDQWEPATTRNPPSPNLLPINQIVKNISSIQKPDTTHWIRSTNSFVNNIKSIKIKPKLTSKNENHFGPLINFSEDINEETKPLKIKTTSIEIKIDLEDTPKHITEERINKTSTITNVDLDAPITKISAQTSSNTNDSISYSPLPTAEQLPKTPISPISKTITTEICDITESPYPIPLINVDLNKILDNIETNMESDVFSSISDYESEIDNDNNIKTNNARESDIDLFSQSICENNQINIMQKNNQTRSNTPENAFNIMTKASEKNTIKKILNVKKKVIAALPPIPPMKTKPDSTLNCQAEDKENLIVYRFGSKGKFSCNTTHKSQECGEIAVYDYDALVEHAESNHIIQFNEQSYIDCHSCHPKKGKDSNTPVPVKYADFFNHAEAHGHIITTAAADTMKTYLRLTKENQLYCSHRNSNRKSKCNEIFNLDSDLSDIIEHMKSHPKYSFDSTKSIQCYCGIWKPFTNLIDHIKTVHLKEFINSISDSKTIKMDINTNITPINLAMILGTDETQNIPDEEAIKPRSLPENLAFNRDIEKELS
>LIN5_SM_pol#LINE/R2 2930-6244 [Schmidtea mediterranea]
WSQHLVKAYIFSHAIKSSTIFINPYTCNALIQCNYKIFFETFPFKDFARWNEIILPIHNNSSSWSFFFLNKKKRIALIIDPSADDSHTMHLELATDILKTILNVQNIFGDLHFSLTEMEYPICHEANLSAFYVCHFLKCLMSDIPIDIPDINTMKEAMRPIIRKYNCAKFPESDVRSYRILIEDLIYQLNLDTISCEELLNEIERINGRINPKRYFKDNKPKSDIIHLQKKKAAELLCVKRLKFQINQKIEIGKIWENNEIDHKPAMAKFLKTFASKDCPMSNTSPIKLPFYRDVDSDTYTDCENLSHIMKNLDSSAPGMDLITGGDWKKISPKHELITAICNCVLRNKISPQRWKLYRTVMILKPGKLSESFKANSWRPLAIMDTAYRIFTTLINNRLLHWIRSGTLISQNQKAIGVPDGCAEHNATLHIAIDRAKRCKTELHIVWLDITDAFGSLPHDLIWYTLAGMGLKNETLTLIKELYKDVRTMFDCQGTMSEPVPITKGVKQGCPLSMTLFCLSIDYILKSILDNHPFLLHNLNISILAYADDLVLLSDSYQGIRKTLENTVKLAGFANLKFKPSKSGYLSINSAGSVNKKLHLYDEEIPTISENNKYRYLGVDFSYKRNQDIDGRLDSALALTRSLFMSYLHPSQKLNAYKTFIHSKLIFSLRNCIIGHRILDCDRNRITQGREKQLGFDQKIKGLLKTMIGDKFQALNNYFLYTHCKMGGLGITATIDEYLIQSITGITRLFHSSNLGFRDMLIAELAHSRGSKNFEAGLKWMNCEISKEFHNTSFFVKFQKSALALKRKFSICISLKFAEDKFSLEMIYKKRTSYIDHRNLNTLSKELHDFVGLHYAEQWYKMKVQGRIAASIGDSITAKYLIASDTLNDAQYCFLVRARNNILNLNYSAYRLKYNLNTKCRLCHLDEETQTHVFNHCRAKPNARRVKHENVLVSIVAFLEKIGFEIDVEKSPKYVSIPTKLKPDMVIRSKRNKDIHVLDLKVPYDSVEGFEKAREDNYVKYKDLSLQIGKAFNQTATISAIVIGCLGTWDKKNNAPLSKIGLTKTEIISLARIACPNAVIACYHIYREHVSFTKNVIPLPFSLV
>LIN6_SM_gag#LINE/R2 2555-4320 via tfasty with LIN5_SM_gag, 1 frameshift. (C term fragment; remainder has 31 stopcodons in it) [Schmidtea mediterranea]
IGYLDRRDPHGGWIDDTRLTLQVPAHSAAKYRQALWDHGYSLATYGETSWPRRPDDRGDEVELPSVAIKREPGRNPAREARQRAEFNLLQLENLDDIILSESSDTSQPPSQLLYQPSSCPKTATIQQVDLDQSSFTDDTSLTAILSKPQSQSTSYPINNSPLTIQQHNVTISSSPEPTCCSTPHNHLNLNTFNTPSTFFASLKKQPFEQPITPITKNCKTDLYEPCSLNLTQLDESLPINPPRIKPSPLISDDEEPSSTKTPSQKPAKNLTYAQNSQISDLFRTQEPLSDNSSPESLITLNTSIISNLATPNEPHNFIIPAPVLNITSKITTKNIPISTPLPSCLKQQNQSISIQLHDINETLYDMNRRGKLICRPKHRNKTLCNSISIYNRHFIFEHAQKVHNITITDNTIIDCYQCKPKKGPNKHAMVKIKFIDLYKHIELNDHPIEIDNCSKNNQIIKINSSNKIICHNNNKGKNIRLCYHKFTYNTAINDIILHMTKKHKKKHFDKEAEIYCYCGAWISIHNIALHINDKHPSTPNINSTDYIDKKDNNKNLFAGIINTDETIQVPIELPKTLLFTKNIDSESQ
>LIN6_SM_pol#LINE/R2 4321-5295 (N-terminal fragment) [Schmidtea mediterranea]
WSQHSIKAFIFTHAMKKSSIFVDPISSNSFIQHNFKTFFSTFPFHKFSDWNEIIMPMCKPNGSWFFFFLDKKRKLATLIDPLSENSLLQHSDLASDILNTILNLQNIVLETDIDLSSLEYPRCSINEDSPFFICHFLKCLNSSEPISIPDIPNMTTSIKSIIINYIRNGFLETDIRKYKNCIDSLIFQMNNTDDTVNCSLIEILKINNNLNPLKYKIKTKSDIIYKNKKREHELECSKRYKFKYKPKEQLSKILNCNDIITIKPCMNKFINIFANNTSPVSEFSTIQLYNSPENDTNTPTCPEDIKLILKKLKNTAPGLDKILL
>LIN7_SM_gag#LINE/R2 8-2323 [Schmidtea mediterranea]
MPKKFNSKLTFNSTGPKSEADDMEPKNCNSNLISEMNRLFQTFINRIMEKNIVQNKNRTSRSKSISKPNCNNDRESKITPKFKNKGFKIENHLRDDKNFNDLKKCFYNHEKFYKNLENCDLNELIFKIFLLKVKINKFESKITEFKNNFKNEKKDKKKIINNEDKTTETKILKSFKEVLTNGINKELQSNKKNINNEKKAEIKKDEYYKQNSKKIIRSKTINLDIITKLTDDFFNNLIWTFHKYDEKEDSIQYNTEILKYVQIKFILMDKNIRMPSNAIKKIENSISKEIFKLTIDNYFNLLNNEIHLNFNNRFKNLKYESFLKDFLFIIGLKFKSFLNVFKYLKLSNHININAKKIFRAHQARETNVRSSSTSGRLAENNVKNSEAENIVHNRYNLLVDLDDDEMGRTNKSFQYKKNPKLTRCKMGSISIPGEMDSTMSYSPIPSNIQLSKINISTSIPSNTGITDCNKSPIPIPLIKKNLDDILNKLKEDKTKDSKIIDLDTSRIFSETENEEVDRASNIYLERDSDMSLFSQTPSQSENNNALNYRSDKSIIQRVLKVKQKSLTAGIPPFSRKKKNFFRNIKPEDINSXIIYRLDSKGKVGCKSNWKKPDCGEFPVYDYEGLVEHAMMNHASTFNEETLIDCLVCHPKKGKNMHMMTLIRFADIFNHIMINEHQVDIARHDQKKIYLHLTKENLLHCTYRTNNKKILCKKVFNINSTMNDVLEHMAIHTGYCFEQQKKIMCYCGMWKXFDELIKHIKNHSHEXVYKLS
>LIN7_SM_pol#LINE/R2 2500-5810 via tfasty with LIN4_SM_pol, 1 frameshift. [Schmidtea mediterranea]
SQHLIKAFVYTFAIRPSTIYIDPITCSALIQCNYKTFFETFPFKDFADWNEIFMPIYGKNSSSWSFFFLDKRRRIAMIIDPTADDSHALHFDLANDILRTILNIENIFGKLKFGLTEIEYPICREFGLSSLYVCHFIQCLILGSALTIPDVSAMRILMRPIINKYNCTKFQDNDARKYRILIDDLVYQLDLDTITCDETLCEIERINGRLNPEKYFKKEKPKSDIIHLRFKKSAELLCVKRLRFQANQRQEIAKIWEDDGIEHRPPINAFLKTFASSECPISDTKSITLPFYSDNESNLTTDNENMSHVMKQLDNTAPGMDLITVADWKIISPKHILITAICNNVLRNGVCPKKWKLFRTVLILKPGKKDESFKTSSWRPLAIMDTAYRIFATLLNNRLLTWIKKGNLISQNQKAIGIPDGCAEHSATLHLAIDHAKRRKKELHIVWLDITDAFGSLPHDLIWYTLEGMGMKKETIYLIKELYRDVSTFFDCQGMISESVNITKGVKQGCPLSMTLFCLSIDYILKSVLNDCPFHLHDMNISILAYADDIVLVSDSFTKIEMALRRTVRLASHANLRFKPSKSGYLSINNNNHDIYKLYLYNEEVPIISNENKYKYLGIDFSHKQNQDIDGRLQSALALTNSLFKSYLHPAQKLNAYKTFIHSKLIFSFRNCIIGHRILDCDRNRITQGREKQLGYDQKIKALLKTMVGDKFHALNNYFLYTHCKLGGLGVSSSIDEYLIQSVTGITRLFHSYNTDFREMMMKELAHARGEENFEAALKWINCEIDKPFKNASFFVKFQKSVYALKRKFEIYIKLKFEDNSFKLEMRYKNRISYIGYRNLRNTLSKDLHDFVGLHYAEKWYEMRVQGHIGNAIGDSITAKYLIASDILNDAQYCFLVKARNNLLNLNYNAYRLKFSLDTMCRLCHLDAETQAHVFNHCLAKPNARRIKHENVLISIVAFLEKIGFEIDVEKSPKYISVPTKLKPDMVIRSNRNKEIHVLDLKVPYDSVEGFEKAREDNYVKYKDLAIEIGKAFGEKATISAVVIGCLGTWDKKNNAPLSKIGLSKPEIVSLARIACSKAVIACYHIYREHISYTKSTMALPFSI
>NeSL-1_ACa#LINE/R2 108-4163 [Acanthamoeba castellanii]
MAAKSVACPHDGCANKYASEASLRRHIKNKHATDEEGDETSHSCPHCHRPFSTARGLSVHIGKSHRQAPPEPTRPPPAPAPADPGLDPDPGPTVTPPSRDDEDREEPDDDPVEIADLSCPHCAQALPSAHGLANHLRACKDHRVPAPGAPRSGPPSSRYWTAVEHHRYVEAMARFADHPDLLARAAAHIGTRTYKQVDSHRTKVIAAEREGRPVRTLDPTMDWRMRPYCASTTARWLAEQGRSPVAPRSPCPEPHAPPPAAALLYIPATPPAPTPRAPVAPPKLAPPAESTVPATPDGNPEAPAPPFSAPGPPTPKALPPPPPSRRNLRPHLVPKDAWQGVADAVAPAASRLLRTPLAHLSTEQWATFEAALAGLEATLHHAARSAEAVPTRCASRAREDAERQLREARKTREIFGKAAALYAAGKDPTATIERIPPEVRLHLPTPGSAEWPARAAAARRVIRRAVARADRLRKRMGILDSDRDLQRLFNANQKKAVRQILAPSTKAPRCQLDPAAVEEAYIQTLAKPPPIDPSPPWKNSVQWPRPPTAADDGGSPFSVAEVRAQLRRLPNGSAPGIDGIPYEAYKRTKLDATLAHVFEVVRLNARLPARWDVARTVLLYKKGDPNDTGNWRPISLQVTIYKIFTAALSKRLISWAGKHNTFSASQKGFLPAEGCHEHAFVLRSVLDDARRHKQNVYLAWYDLRNAFGSVSHDLIAWCAAMLGLPRYLRDAIGAIYRHSALFVQVGDQETTGVIPMRCGVKQGCPLSPLLFNLCVEPALRCLRRTTGYKFYGTSITVEGQAYADDLLTAAPSAYHAARQVATIEEWANWAGVSFVVQALSLDAPAGKCAALAINFEGGLMHSIDPALKVQGAAIPAMSRNNVYRYLGVHVGLTDALGQANELLEKASRDARTICASGLEPWQKVVAIKTFILSRLPFFFHNGKIQRGRCQQFDRELRENLRAALRLPVCTTNAFFHSRVASGGLGILPIAEEQQVYLAAHVFKLLTSPDLSIRAIARHQLAEVTHARHTTPVQDGEASPFFGWLMRGQEVASTTPSGDVSSIWFAAAGAYSRMGWSVRDALHPTLTVGPGVQFEGRFQRANVIPALRASAFSRHAVEWSALRTQGRAAAYQHAVHPATHHWVHNSAGLTTKEYRFAIKCRLGLLPTRAAPHHRNGPTACRACSYARETANHVLGHCPATKAEVIARHNRICRALAQAAEASWTSVLEDVPIPGVDSPLRPDIYCSRPGQCAIIEVAVSYEDAFNASMEGRAKQKTDKYAGLAATVEEQLRLQTRHAAFVVGFSGVVLPASVTATATSLDLPPKTWNVLLKRCVAASIKGSYTAWRRFRRSTP
>NeSL-1_propol#LINE/R2 (perhaps NeSL) gi|17564802|ref|NP_507408.1| Predicted CDS, ulp1 protease family, C-terminal catalytic domain and Reverse transcriptase (RNA-dependent DNA polymerase) family member Malik & Eickbush put this element in its own LINE-class based on the presence of a cystein protease, absent in R2 pol polyproteins. However, the RT seems to fit in among other R2 elements and none of the other supposed 'NeSL' elements (YURECi, HEROs) match a protease domain. Need to do own phylogenetic analysis. [Caenorhabditis elegans]
MVMVNSVKWQPSAHAEAIGTGKSWAPQRSQASEHGWQSNAMFDPPNRILFARDSWSLNQSTHLQNQRSGSGLGIRPGQVRNNMVGGGPHRAGDPKRRVELVSIQGSEVTVRTIYPSDEIFSCYSKSCDIKTKAGYGPEDLKHLTRHIKNEHGLKARWAYQCGLCNEKSDPSVSEGHKWMEAHMVAVHQSSAEKRIKSYQKCTGARVAEQLQAAAPSLTVPGKHKSGSRDAAKDSMTPTKDDDPKTRIYQTRSVVKKSTQKTAEPTDEGSRGPKYASIFQKSVKARKSLALLCELSSPKPMNPLPTNELTLKEGNSRELAKEEAPSEGIDDIVIIDLDESEESPPRRKRFNTWCLDHESSREAWLDDTAIFWYISYLCRGSTKYSALDPCLWSMYKVKGSRYILDRLESSITYFFPICEEDHWTLLVLKDNSYYYANSLHQEPRGPVRDFINDSKRARKEFKVQVPLQRDSFNCGVHICLMTNSIMAGGKWHSEEDVRNFRKRLKKTLQEEGYELYSVNSLGIPFQAPTTEQMDYKETRCKRSYASVLTQISPPAKRPDCKPDNNIFVPTKDCAAEGNPQEKGRNESPEEINTEHIVVAGKPANNISPRCRSTSEMLFEMVKATTSSGRSSLGTMTQDEFIRTSTIAEAVPLMSIKLPPMELPRKILPPIPPRKPTQTNGGQKGKQQRVPTGKPDTLNAKVRNWFNNQLESYAMEGRSFQRLEWLTEVLTASIQKAAAGDEGIVDIICKRNPPLEVAKGEMCTQTENKRKTTNNAARIADPIQSSKGAGDVKASYWKERARTYNRIIGSKEELCKIPIDQLEDFFKKSTSRTNVQESIMKEKSSKIPALKIGNWMEKKFIGKEVAFALRKTKDTAQGADGLRYHHLQWFDPSGELLAKVYNECQRHRKIPKHWKEAETILLFKNGDQSKPENWRPISLMPVIYKLYSSLWNRRIRAVPNVLSKCQRGFQEREGCNESLAILRTAIDVAKGKRRNLAVAWLDLTNAFGSIPHELIEYALTAYGFPQMVVDVVKDMYQGASMRVKNATEKSDRIPIMSGVKQGDPISPTLFNICLETVIRRHLESANGHQCLKTRIKVLAFADDMAILTDSPDQLQRELSKLDNDCTPLNLIFKPAKCASLVIQKGVVRSASIKLKGNAIRCLDENTTYKYLGVQTGSAARISAMDLLEKVTKELECVVKSDLTPPQKLDCLKTFTLSKLTYMYGNSIPLITEIKMFANIVIRGVKVMHRIPVRGSPLEYIHLPVKDGGLGVACPKTTCMITFLVSTLKKLWSDDEYIKTLFTSLAEEVVKKESKKSTVTMDDIADYLNVEERINRSEFGYNSITRLRDVMRNLAITGDSPLYRLKMVVKNGKIALLVQATSESMERIYTEEDAKKLQRSLKDQVNKALKHRFNTTKVVKSKVVRVVQQHPASNRRCGKDLETQWHILQNCPFGFSKKITERHDAVLHKVKTLIESGGKKNWTMKIDEELPGFSRLRPDICLKSPDEKQIILADVACPYEHGVEAMERSWQAKIDKYETGFAHLRKSGTKLTVLPIIIGSLGSWWKPTGDSLKELGIKGSVINSAIPELCATVLEHSKNTYWNHIFGEAYIPNPMRNGHAKPAGNGWKKERLQKAPVRPTN
>Perere-9_pol#LINE/R2 361-3792 The 2010 added R2Sm-A is near-identical to the2005 entry Perere-9. Perhaps the name Perere-9 was meant to change to R2Sm-A [Schistosoma mansoni]
MPVSTGAETDITSSLPIPASSIVSPNYTLPDSSSTCLICFAIFPTHNILLSHATAIHHISCPPTPVQDGSQQMSCVLCAAAFSSNRGLTQHIRHRHISEYNELIRQRIAVQPTSRIWSPFDDASLLSIANHEAHRFPTKNDLCQHISTILTRRTAEAVKRRLLHLQWSRSPTAITTSSNNHTITDIPNTEARYIFPVDLDEHPPLSDATTPNASTHPLPELLVILTPLPSPTRLQNISESQTSHESNKNSMHTPPTYACDPDETLGATPSSTIPSCFHSYQDPLAEQRGKLLRASASLLQSSCTRIRSSSLLAFLQNESTLMDEEHVSTFLNSHAEFVFPRTWTPSRPKHPSHAPANVSRKKRRKIEYAHIQRLFHHRPKDASNTVLDGRWRNPYVANHSMIPDFDCFWTTVFTKTNSPDSREITPIIPMTPSLIDPILPSDVTWALKEMHGTAGGIDRLTSYDLMRFGKNGLAGYLNMLLALAYLPTNLSTARVTFVPKSSSPVSPEDFRPISVAPVATRCLHKILAKRWMPLFPQERLQFAFLNRDGCFEAVNLLHSVIRHVHTRHTGASFALLDISRAFDTVSHDSIIRAAKRYGAPELLCRYLNNYYRRSTSCVNRTELHPTCGVKQGDPLSPLLFIMVLDEVLEGLDPMTHLTVDGESLNYIAYADDLVVFAPNAELLQRKLDRISILLHEAGWSVNPEKSRTLDLISGGHSKITALSQTEFTIAGMRIPPLSAADTFDYLGIKFNFKGRCPVAHIDLLNNYLTEISCAPLKPQQRMKILKDNLLPRLLYPLTLGIVHLKTLKSMDRNIHTAIRKWLRLPSDTPLAYFHSPVAAGGLGILHLSSSVPFHRRKRLETLLSSPNRLLHKLPTSPTLASYSHLSQLPVRIGHETVTSREEASNSWVRRLHSSCDGKGLLLAPLSTESHAWLRYPQSIFPSVYINAVKLRGGLLSTKVRRSRGGRVTNGLNCRGGCAHHETIHHILQHCALTHDIRCKRHNELCNLVAKKLRRQKIHFLQEPCIPLEKTYCKPDFIIIRDSIAYVLDVTVSDDGNTHASRLLKISKYGNERTVASIKRFLTSSGYIITSVRQTPVVLTFRGILDRASSQSLRRLCFSSRDLGDLCLSAIQGSIKIYNTYMRGT
>R2-1_DWi_pol#LINE/R2 150-3314 R2-2_DWi_pol near-identical. [Drosophila willistoni]
FERRSNSWGYRPLEPRSVGTESNNNSPRSNITITSATSRPGDQPREAIAVVNLAGEIPCAVCGRLFNTRRGLGVHMSHQHKDELDTQRQREDVKLRWSEEEAWMMARKEVELEASGNLRFPNKKLAEVFTHRSSEAIKCFRKRGEYKAKLEQIRGQSTPTPEALDSITSQPRPSLLERNHQVSSSEAQPINPSEEQSNWEIMRILQGYRPVECSPRWRAQVLQTIVDRAQAVGKETTLQCLSNYLLEVFPLPNEPHTIGRSNLRRPRTRRQLRQQEYAQVQRRWDKNTGRCIKSLLDGTDESVMPNQEIMEPYWKQVMTNPSTCSCDNTRFRMEHSLETVWSAITPRDLRENKLKLSSAPGPDGITPRTARSVPLGIMLRIMNLILWCGKIPFSTRLARTIFIPKTVTANRPQDFRPITVPSVLVRQLNAVLASRLASKVNWDPRQRGFLPTDGCADNATLVDLILREHHKRWKSCYLATVDVSKAFDSVSHQAIIKTLQAYGAPTNFVSFIEEQYKGGGTSLNGAGWSSEVFIPARGVKQGDPLSPLLFNLIIDRLLRSYPREIGAKVGNTMTSAAAFADDLVLFAETPMGLQTLLDTTVGFLASVGLSLNADKCFTVSIKGQAKQKCTVVERRSFCVGERECPSLKRTEEWKYLGIRFTADGRARYSPADDLGPKLLRLTRAPLKPQQKLFALRTVLIPQLYHQLTLGSVMIGVLRKCDRLVRQFVRRWLDLPLDVPVAYFHAPHTCGGLGIPSIRWIAPMLRLKRLSNIKWPHLEQSEVASSFIDDELQRARDRLKAENVQLCSRPEIDSYFANRLYMSVDGCGLREAGHYGPQHGWVSQPTRLLTGKEYLHGVKLRINALPSKSRTTRGRHELERRCRAGCDAPETTNHILQKCYRTHGRRVARHNSVVNAVKRGLERKGCVVHVEPSLQCDSGLNKPDLVGIRQNHIYVIDVQVVTDGHSLDQAHQRKVERYDRADIRSQMRRFFGATGEIEFHSVTLNWRGIWSGQSVKRLIAKDLLIAEDTKLISVRAVNGGVTSFKYFMYCAGYTRS
>R2-1_NV_pol#LINE/R2 196-3214 via tfasty with R2Ci-A_pol, 1 frameshift. [Nematostella vectensis]
MDILNCPDCDFIAKNKGGLTNHRTRMHNFMKTTSPEVGDFPCRDCDRRFKTGSGLSLHRRRAHPDIYHSENLPFSRVKARWSREEIILLARAELQAKEAKISVGINKILADQFPERTLEAIKGMRKQNRYIEILNQIRDESICSLLPSRAVNADDVSSDNISFTEVPDDTEKEPSPSGGSIPPCPPCWKSCLLENIDIKRLAVESLDVIIPGCPDDACRALIDLEFVSWLEPTVSWLKIIIIIIVASLIVRKRKRSIVQTIIIPITLKGPLTTGGEFNKIQHLWSKNKSSAASKVLDGSWAVPDQNCKIYSDVMFTTWSNLMKVPSVEDKRSPVAVGPVLWHLLSPISLSELKAALSGNSKTAAGPDKITSNDLRGLPCEDLIAHFNLWLFAGTQPSDLCLGRTIFLPKEISPDDALLFRPLTVASVIIRLFHKILARRFESSLPLDQSQKGFKKGDGIAQHVLTIRSIIEGAKRDLKPLHMAFVDVKKAFDSVSHETVVIALQRLGVPSPLISYIRDLYNRSSTILEFAGCRSDSVGVTRGVKQGDPLSPLIFNAGIRGKSASLSIVIDGKAKKWVVDASPFLTAGSQAIPAVKASGDYKYLGILIGANGAKQRSALADVLNQGLSNISRAPLKPFQRLTILREHFIPQFLHQLVLTPVFAVFLRWFDNSIRSAVKSWLKVPKDTINAFFYARIADGGLGIPLLTSKIPLLKKSRFENVFNACDAISKALSVDLYFRSNLEKWSKPVVVDGFPISDKSSYNAAFASALYSKIDGRGLSECNLCPEASNWVLNPPSFQSGRKFIGAIRARAGVLYSKARAGRGRPGFDTSCDACRRPATAQHMVQVCPRTSGPRICRHNNVADFIRKSAEKVGFKTIYEPAIRDPILGLRKPDLIIFDDNHAHVIDITICSDQVSPNTAHAQKVEYYNHPAILNWVKRTTNVATASCSAVAANWRGVLASDSVAFLRSILRFSRPKLSLLSLKVAELSSEIHAFFSKSTYRVGMG
>R2-1_PM_pol#LINE/R2 1631-4885  [Petromyzon marinus]
MNERLTDELTTEFILSDMFLWDYPCTDQNKCYPCNLVFLDHRTWSSHMARVHPHANKTYKCRICNRTADSIHKIASHYGRTCKSLIGKTNAITTTIDETLFSCLHCSRGFTTKTGLGVHTRRTHPTEHEAILQQNTPGRKVRWGEEEVEIMAHKEAQQKDEDINMNQLIQNSVMPHRTLEAIKGKRRNIKYKELVRTLKETTYKVENQCLVNLVLPTTSEITTTPSEGDQPAIRAEKEQSPTAAEDLQVIINDLKSQNFSHNQALLLLNSHVEKFLNRSKPIKRKDHVNQQEIDENRHRRQSKQTKYRRYQYLYHTNKKALLDEITSDRSGPSIYPTEESIRGTFVTLFESNSPPDNIPSKLKNDQSCIDIVKAITLDELIKTLAIMKDKSPGQDNITLSDLRTLPIKYLLDILNIILYIQDIPQIWKQHRTRLIPKTKEELEKPSNWRPITISSIVIRLLHKILSYRLGQQLKLNYRQKAFLPVDGCFENSALLHFIIHNARQKHENTQIVSIDLSKAFDSVSHESIIRALNRFNLSKESITYLTNIYKCNLTDIVFGSTIMRNINLKRGVKQGDPLSPLLFNMIMDELLDNLPTYIGVNVGNQKVNSMMFADDLILFAETECGMNKLLDITTKFLDDRHLKININKCNSLRFIKYGKQKTFSVATTSSYFINNEPINPVSYVKGFKYLGIEFDPRGKRSISCNLLAAMLNKLTRAPLKPEKKVYLINNNLIPRIIHQLVLGKVTKGLLMSLDSEIRKTVKLLLRLPHDTPDSFFYTSVSNGGMGIRNLCDSVALSIINRHNKLITSDDLVIRALSQQSYTIATLKQAHIIAGSKFPSKSLNQNKWSNKLYQTTDGRGLVYCQSQTENNSWITGNHRTIKSYNYIDMVKLRINALPTKSRCNRGTLETKQCRFKCRSINNQISEETLAHILQKCDRSHYSRIARHDSLVQFLATAAQKLNWEVIKEPTLPSDTNKAKPDLILVRDSHVLIVDVAVPWESRSLAHAYDFKVKKYATDKKMQAYLKTIYPEKEIRTEALIISARGGWCALNNMVTKKVGLSSAWVKLALIKVMEGSVKIWRSWSKG
>R2-1_SM_pol#LINE/R2 1091-4186 No obvious gag in 5end. [Schmidtea mediterranea]
MKKVLNNETEKLPGSNLTFMCGFCDREFDTARGRGVHESRGHLVERDAAVQSRVKAVVSKKYYYSNEEDVALAKMQLZHADLAKSEXLEAMYLALGKGRTREAIEQHIRKSLRYKGVLEEQRKLLETARGNVRQNNVGVPASNATKNLQRFLESLPLGTNRREERLDRIIRSNSIESQRLELIHYCNDMCQDFVQLDCQXNPINAIRRRNPKRLSKKQLKRAKFSALQRLWIRDRKAAAQLVLKDKLDSLLSNKEDSKDLGSYWQQVFERESELDRRPIPQVVENEELNSPVLEKEVEWAVKNIKKSTAAGPDGLTALALKKIPYSELVKLFNIILLVGFLPDVLKNSRTILIPEVDNPQGGGDYRPISINSVLTRTLNKILAKRVSEGDFGINGQKGFKSVDGCLENLATVESILADARMKKNKLAVVFLDMSKAFDSVNHESIVRAGEIKGYPKLLMTYVKECYNDATTNVAGVTAKFNRGVKQGDPLSPALFNNVIDLAIERVSGTGIGYNMGGKKYSVVAYADDLVLFGESREGLQIALTALLEELKLNGLTPNPAKSASLTFERSGPHWFASTDTVTALGDQIPAMGNIETYKYLGIKFNSCGVVKGSLPGIYTKKLELISKAPLKPQQRLAMLTDFLIPGVLHQAVFGQTNAGDLRSLDKRTRRAVRSWCHLPSDTSTAFIHAKAKDGGMGIPSIRAEVQFGKLDRFGKLPNVKDERSKVLADNAHIKKKMLEKLGVGIPIKGVRCKNKLEFYNKMREELIKSNDGIGLKEASLVPSANTWLKLSDLHMSGRTFVGCLKTRGNLMATVTRTSRGGQNPGIELNCKKGCQYQGSLNHIVQKCPVVKGLRIKRHDEVVKYVEEITKKAGWSATMEPIIPFEGSHRKPDLVLVRGDLGKVVDIQIVSDHCGLDEKNSCKIGKYDNDIIRNYVRGLGPSRVEVAAITLNWRGVWSRDSFNLIKRLGMTEMDAKIISMRVLASTAKMFKTCKKVLEPVCRTKTADCDGYGPEETSARPCHELNLKESSGT
>R2-1_TG#LINE/R2  176-4348 [Taeniopygia guttata]
MASCPKPGPPVSAGAMSLESGLTTHSVLAIERGPNSLANSGSDFGGGGLGLPLRLLRVSVGTQTSRSDWVDLVSWSHPGPTSKSQQVDLVSLFPKHRVDLLSKNDQVDLVAQFLPSKFPPNLAENDLALLVNLEFYRSDLHVYECVHFAAHWEGLSGLPEVYEQLAPQPCVGETLHSSLPRDSELFVPEEGSSEKESEDAPKTSPPTPGKHGLEQTGEEKVMVTVPDKNPPCPCCGTRVNSVLNLIEHLKVSHGKRGVCFRCAKCGKENSNYHSVVCHFPKCRGPETEKAPAGEWICEVCNRDFTTKIGLGQHKRLAHPAVRNQERIVASQPKETSNRGAHKRCWTKEEEELLIRLEAQFEGNKNINKLIAEHITTKTAKQISDKRRLLSRKPAEEPREEPGTCHHTRRAAASLRTEPEMSHHAQAEDRDNGPGRRPLPGRAAAGGRTMDEIRRHPDKGNGQQRPTKQKSEEQLQAYYKKTLEERLSAGALNTFPRAFKQVMEGRDIKLVINQTAQDCFGCLESISQIRTATRDKKDTVTREKHPKKPFQKWMKDRAIKKGNYLRFQRLFYLDRGKLAKIILDDIECLSCDIPLSEIYSVFKTRWETTGSFKSLGDFKTYGKADNTAFRELITAKEIEKNVQEMSKGSAPGPDGITLGDVVKMDPEFSRTMEIFNLWLTTGKIPDMVRGCRTVLIPKSSKPDRLKDINNWRPITIGSILLRLFSRIVTARLSKACPLNPRQRGFIRAAGCSENLKLLQTIIWSAKREHRPLGVVFVDIAKAFDTVSHQHIIHALQQREVDPHIVGLVSNMYENISTYITTKRNTHTDKIQIRVGVKQGDPMSPLLFNLAMDPLLCKLEESGKGYHRGQSSITAMAFADDLVLLSDSWENMNTNISILETFCNLTGLKTQGQKCHGFYIKPTKDSYTINDCAAWTINGTPLNMIDPGESEKYLGLQFDPWIGIARSGLSTKLDFWLQRIDQAPLKPLQKTDILKTYTIPRLIYIADHSEVKTALLETLDQKIRTAVKEWLHLPPCTCDAILYSSTRDGGLGITKLAGLIPSVQARRLHRIAQSSDDTMKCFMEKEKMEQLHKKLWIQAGGDRENIPSIWEAPPSSEPPNNVSTNSEWEAPTQKDKFPKPCNWRKNEFKKWTKLASQGRGIVNFERDKISNHWIQYYRRIPHRKLLTALQLRANVYPTREFLARGRQDQYIKACRHCDADIESCAHIIGNCPVTQDARIKRHNYICELLLEEAKKKDWVVFKEPHIRDSNKELYKPDLIFVKDARALVVDVTVRYEAAKSSLEEAAAEKVRKYKHLETEVRHLTNAKDVTFVGFPLGARGKWHQDNFKLLTELGLSKSRQVKMAETFSTVALFSSVDIVHMFASRARKSMVM
>R2-1_TSP_pol#LINE/R2 132-3386  [Trichinella spiralis]
MSNRLANTAAAGGVPEKTSGTLDIPGQPSSSGEKRAISYPGPFGCNSCSFTSTTWLSLELHFKSVHNIRDFVFLCSKCKKSWPSINSVASHYPRCKGSVKAAVVPTSLANTCTTCGSSFGTFSGLQLHRKRAHPDVFAASCSKKTKARWSNDEFTLLARLEAGLDPACKNINQVLAERLMEYNITRGVEMIKGQRRKDQYKALVRQLRSNSETQQCVGLAGSMDSNVPANDTSSSVASEVSITYPEYGAVMSCDLIKEATGMAIVDINELQSNLRKAFLSGRKLPMKFHGARETAQKKMANPRVAKFKRFQRLFRSNRRKLASHIFDKASLEQFGGSIDEASDHLEKFLSRPRLESDSYSVISGDKSIGVAHPILAEEVELELKASRPTAVGPDGIALEDIKKLNTYDIASLFNLWLKAGDLPASVKASRTIFLPKSDGTTDISNCRPITIASAMYRLFSRIITRRLAARLELNVRQKAFRPEMNGVFENSAILYALIKDAKVRSREICVTTLDLAKAFDTVPHSRILRALRKNNVDPESVDLISKMLTGTTYAEIKGLQGKLIPIRNGVRQGDPLSPLLFSLFIDEIIGRLQACGPAYDFHGEKICILAFADDLTLVADSAAGMKILLKAACDFLEESGMSLNAEKCRTLCITRSPRSRKTFVNPAAKFIISDWKTGISSEIPSLCATDTFRFLGHTFDGEGKIHIDTEEIRSMLKSVKSAPLKPEQKVALIRSHLLPRLQFLFSTAEADSRKAWLIDSIIRGCVKEILHSVKAGMCTDIFYIPSRDGGMGFTSLGEFSLFSRQKALAKMAGSSDPLSKRVAEFFIERWNIARDPKVIEAARRVYQKKRYQRFFQTYQSGGWNEFSGNTIGNAWLTNGRARGRNFIMAVKFRSNTAATRAENLRGRPGTKECRFCKSATETLAHICQRCPANHGLVIQRHDAVVTFLGEVARKEGYQVMIEPKVSTPVGALKPDLLLIKADTAFIVDVGIAWEGGRPLKLVNKMKCDKYKTAIPAILETFHVGHAETYGVILGSRGCWLKSNDKALASIGLNITRKMKEHLSWLTFEIIFITQISRIYNSFMKK
>R2-1a_Cis_pol#LINE/R2 980-5347 [Ciona savignyi]
MAGHKITMSEGKLLEVAVRYGGVRNVSYECPVPDCTKTFSQANNLIRHLNNFGNTKHRAHNFTYFFTCEKCKIQIHSNTKHNISNHYKQCCATGGGPSCETGQYFCPACEQAGLGNLESALRHFQSSHPEFNLPPRSQFSKSHPNSYTLSLKPKDHLMKILYSGPLTPGQLVCPIKICLRSSAARLFHDVSKLRKHMLVDHNRTLVYETTCGKCLRPVDTSKNMRKTTSHFEKCSGESFISSPSPIPQKTYKLDLPSTSTPPPRKSPKLQPYKPIRTFKNPLTKSSQSKSDNPPKPTPFFSPRTLERSASWPALSEVVDPLPKLKEKHPSLPCALDKCPPSPRIKPSTLVPPCHTANNSPKPTSPESPSTLKPLPRPIRPSKPLEDWLTVRSVGPDREIVLNIGPRPRPGPAAGSRTTSPPSTAPAKRVAANPIAAPLSGEPGATLDCGQTGRKVQPPKKRPTESAGSLPPPAEPATDLLTGREGLARLVEEYHLSGDFGAFCRDLERWTALSSTNRRPKPRRGRYNRGAAARATRNRGRDDRQDPQDRDDQGGPGPVTCGRPQRYKRAAALRSAFGRDMKATVRRIIDGERGDARCEIDPKTIEGRFRDELSPPVREGPECSLPPWMAEAQAGEHAPSNDSQPGDAYDGPITALEVEMVLSTLNVGSAPGSDGLSYGFWRALDPKGLVLSELFEVCRIERRVPGPWKSSRVTLICKDAEGDLDDLGNWRPISICQTVYKIYAAVLARRLQSWALDGGVISRSQKGFMPFEGVYEHVFLLDSVVADARATRRSLAVCWLDLRNAFGSVDHTTIVEALSRFGAPAGLVEMISDIYTGGSCRIRTRAGFTPDIPVGRGVRQGCPLSGIIFNLVMEVLLRGVEANNACGYRLSCAGGASVRVLAYADDVALVGSSRAEXKIQLGVCERFAAWAGFSFNNKKCAAMVLKHQRGGRRLLDSAPLRLCGEEVAILGPDSFYKYLGAHTGYGRQTGGQLVDRVERQVVRLFTSFLTPTQKLSALKRIVLPAMSFHLRVRPCAEGHLRRLDNTVRRCVKTALRLPKGSCRAFFHTSPDAGGLGITSVVAECDILTVTQAFKMLSSPDHLVSLVAKGRLGMHAARMGRSETASACAMADYLSGDSVMGHXSWKTGYRMPADLWTATRAASRRLSLRFSPQPQGEFGLESGTFKIAPRERRSLTRRLHHRQNLWWRNQWAALPNQGKTVAAHSAYAASNNWVKGPSSLAPQALFFGLKARLNQMPTRSVKACYSRAPNYDKSCRRCGAEVETLPHVLNHCPKSMKSILERHDSVLAEVLAAIPRGTFASVDVDRTSREHFRRVGEALRPDIVARRHDGSVVVADVTCPFESCASALDTAAARKIEKYDQLCANLRQLYRKPVESHALVVGSLGSWGRTNNTALAALGIRGAVRSRLAKQLVNLSVEGSHNIWLRWSGGIPKDLVR
>R2-2_NV_pol#LINE/R2 1-1738 via tfasty with R2Ci-A_pol, 2 frameshifts. [Nematostella vectensis]
GTQPVQLCSGRTIFLPKETVPETEQQHRPLTIASAVIRLFHKIMAARLNTTVNTNEAQKGFKAGDGIAQHVLTLRAIIDSAKSDLKPLNLVFVDVRKAFDSVSHETILIALKRLGVPPPLLSYVCDLYSRSTTIIQHGGRGSQPISVRQGVKQGDPLSPFIFNAVIDWALAELDPLIGVKFGGIMVNALAYADDVVLLAETRAGLSKIVSAFERNLALGGLTISSGPKGKSATLSIAVDGHAKKCVVVDEPFLTVAGKVVPSIGPTSDYRYPGILISAGGARVRTDCREILTEGLKNITRAPLKPHQRLILLKTYFLPRFMHQLVLAPVNDGFLRWFDNCVRAACFTRWLKLPHDTCMAFFHAAILDGGLGIPSLSYLVPLLKRDRFLKICEATDSCSKELRGHPFLATLLNRRGLPTKIGGVLASDKGAVRRGWAAELHGRLDGKGLGQSRTVPGAHEWIESPPPLELGGAEFVGAIRARGGLLFSKTRAARGRQVANVNCESCLRPQSAQHMVQICPKSHGARIRRHDGIVEILAKAATRKGLMVQCEPLISDPMYGLRKPDLVVAGEQQAFVIDVTV
>R2-2_PM#LINE/R2 1-2983 via tfasty with R2Dr_pol, 3 frameshifts. Fragment. [Petromyzon marinus]
SLPMVCECCQARFATLSGLSQHKRHAHPVTRNEERIKDGIKGTSQRGVHRSCWSLKEVEQLALLELQFQGKKNINKIIAEALGTKTNKQVSDKRRDLSKKTGAPMSDSLHFSSRPLETLSPPPNVTTGTSSILAQAAERLTNENSGTLEKPAMEAIKAWLNGEGQHDALVETATALMLCPMRLVKNKGKRSKPENDIIKPRILPTRSWMKKRAEKRGSFMKHQKLFFKNRSLLASLVLDGTERHECRIPNADVYRFYCEKWEKVLPFNGLGQFKSSGVANNEYFEPLISVEEVQTAIRAIKPTSAAGPDGLTRAAICAADPEGRTLTALFNAWMITGIIPKELKKNRTILIPKVMDDEKLKELGNWRPITIGSMILRLFSRIMTARLARACPLNPRQRGFIAASGCSENLKVLQDLMRHAKKLHRPLAVMFIDIAKAFDSVSHAHILWVLRHKKVDEHVVGIIQNAYDRCTTSFKSNGESTREISIRVGVKQGDPMSPLLFNLAMDPLICTLESHGVGYSIDTDHVTALAFADDLVLVSESWVGMAANLAILESFCGLSGLEVQARKCQGFMISPTKDSYTVNNCDPWTIKNKDVHMIQPDESTKYLGLKICPWTGIIRSDLHVQLKTRWISKIDEAPLKPTQKVELLNAYALPRLLYPADHSDCKQSTLRVLDQEIIKAVKGWLHLPASTCDGLLYARARDGGLAILKLENAIPSVQVRRLQRIANSSDAIARNIASSQGVEEEYRSLWVRAGGDSEAIPTFFLRGSESKEPVYPRPCDWRKRESRRRCEKPVQGRGIVNFAQDRISNAWLGPRCGFKQCFFIAALQLRANIYPTRESINRGRDGASRSCRKCSARLESLSHILGQCPAVQNSRIARRNKISDILADEAARLGWWVYKEPRFTSEAGELRKPALVFAKGEEALVIDVTVRFELSRKTSSEAASHQVAYYTPPCDQVKVLTKASNVTFFGFQVGARGKWPLENNEVLTSLGLTK
>R2A_NVi_gag#LINE/R2 812-2164 Resembling L2 gags. [Nasonia vitripennis]
MTEGLFSPPVDIGKAKDVEDEIRGHLYFLETVDLSRLSKESQAGIAKAVTGLTKGMDLVMYHVRTMTKEAGLAGAFSKVLQETMRKVILKEREQHLQRVQNAVKSVGEKVQKAIAEISEIGTGMSSNVDINALAESTANKIARGWKESEKQQMSKLEELKQSIDEAKTTGNNITYAQAAGNQWTTVGQKRKRILSSAGLEVTVTETEDVLIKPEQERGEEYPNAAVIIKKLKATIDPDEQNITVERMIPRTNMVVAVVKKGDGPKLIEGITRKGIGLLAETRKKLQPRILVQDIPEEMEEEELMARLKKNVSLEAQRDEVRLIRMIKTRRGNKLAVIELPARAHEDLTHLQKVKIGWSICRIATDIRPNQCYKCQAFGHHAARCASDAVCAKCAQNHETKTCRNKGARKCANCSKACRADCNHPAFDATKCPIFRAELEKSARNIDYSYSE
>R2A_NVi_pol#LINE/R2 2231-5305, representing gi|2851550|sp|Q03278|PO21_NASVI [Nasonia vitripennis]
NQIKKSNTSTGARIPKAMTNPADNFAGGQWKPPGRRSARTSATGMFVCEHCLRAFTTNTGRGLHIKRAHEEQANEAITTERSRARWTNEEMEAVQAEIDCEGRTAINQEILRIIPYQRTIDAIKCLRKQQKYKTIRERVANRRAENRARETELTRLETADEDPASQEQDNPNMSLKNWLKEVIESDDDRLCADLRTAIEMALAGQSPLDVCTVGCYQYTMTNLPLVPVRLGGPIYWCNAQSRSNPGETQRRQTIKESNNSWKKNMSKAAHIVLDGDTDACPAGLEGTEASGAIMRAGCPTTRHLRSRMQGEIKNLWRPISNDEIKEVEACKRTAAGPDGMTTTAWNSIDECIKSLFNMIMYHGQCPRRYLDSRTVLIPKEPGTMDPACFRPLSIASVALRHFHRILANRIGEHGLLDTRQRAFIVADGVAENTSLLSAMIKEARMKIKGLYIAILDVKKAFDSVEHRSILDALRRKKLPLEMRNYIMWVYRNSKTRLEVVKTKGRWIRPARGVRQGDPLSPLLFNCVMDAVLRRLPENTGFLMGAEKIGALVFADDLVLLAETREGLQASLSRIEAGLQEQGLEMMPRKCHTLALVPSGKEKKIKVETHKPFTVGNQEITQLGHADQWKYLGVVYNSYGPIQVKINIAGDLQRVTAAPLKPQQRMAILGMFLIPRFIHKLVLGRTSNADVRKGDKIIRKTVRGWLRLPHDTPIGYFHAPIKEGGLGIPAFESRIPELLKSRIEALGASNMQTARSLLGGDWVAERKKWINTQKIKNSEWAQKLHLTTDGKDLRDTRKAEASYSWIRDIHVAIPASVWIKYHHTRINALPTLMRMSRGRRTNGNALCRAGCGLPETLYHVVQQCPRTHGGRVLRHDKIAEQVAIFMQEKGWLVLREAHIRTSVGLRKPDIIARKGQDCKIIDCQIVTTGNDIRIQHERKIQYYASNWELRRSAATMIQAWAA
>R2A_TM_pol#LINE/R2 1-1410  (fragment). [Tenebrio molitor]
AYADDIILLADNVETAQRLLNASTRFFEDRGLDINPAKCESLVMRTLPSKKKVFTVTTPQFYVKAEPIKPIEVGKAFKYLGQQFTCTGSTNCSTKDLSEQLLRIKKAPLKPQQKINIIKTYLMPAYIHSMQNPAVNKKILREVDRKIRMVVKGILHLPLHLSNTAIYAPAKMGGLGMFSFSRKIPIIVLKRLNNLSRTCSNFHLVLREAAPWVNRLKKMVRPDVTTKEQVDRANGVEHEGSYYGGGTMQCRNDSASNTWINTPPRYWTGSDYVKAVQLRLNCLATRGLPYNPPEQRRCRAGCDRVESLSHVLQKCPLGHTMRMRRHNYIVKRLKTMALKKGWTVEEEPICDARGVLRKPDLILSNEETALVVDAMVSWECPRDLAETFDCKRLVYDQPEFTSVLESKYHPRNIRVLPFIIGARGMWCRQSTETLEAMKVNNVSNRRELVHTTLRGSWSIHREFTRRSWE
>R2Amel_pol#LINE/R2 1096-4494 [Apis mellifera]
MSSNEEGASDTGAPGPGVPVADVSAADGRATYDDHGMSTDYEKQTIELPLNGQIQCLWCHIEGRNQRFLQESQYLKHKDTQHPKGEIIWRCAACQKEFEKLHGCRCHLPKCKGRKEAKGVAKFKCDSCEESFLTQRGLSMHELHRHPAIRNLKRTQGTSRGNTRPINRASVWSKEETDLLIKLNERYKHLKQPNVALKEYFPDKTLKQISDKRRLLPVQEPEDVATTDETGPPPSDSSEESIYESATEDEGGGDMQQTAPNDSWKEPFIQSIRTNHLEEEDSLRKVEEAIERMAMNEGVTEQEVGTLLEQFVDSLTQSPTTERKGSRRKSQKTTKRKTTHNNRKKFLYAKHQELYKKSPRRLLELALSGESSSGREVVNLPEADSVGPLYKSLWGQIGPEKTHRNQPMCNNIDMSEIWTPIALESLVEKFKKIKSDTAAGADQIKKFHLRKKGALHVFAKLCNLLMLHRIYPAQWKTNRTTLIPKPGKSAEEVENWRPITIGSLLGRIYSAMIDRKLRSKIKQHIRQKGFTQEDGCKNNIAILSSALTKMKEDSGGIITIIDISKAFDTVPHGEISQSLMNKGVPSPICEYIQKMYIGCKTIIYCRDKKTLPVDILRGVKQGDPLSPLLFNLIIDPIIGTLDETTEGIKLENENISVLAFADDLVLLAKDKETADKQNRLINEYLDDLKMKVSAEKCTTFEIKRQNKTWFLGDPQLTLGQQRIPYADPEAAIKYLGTNFNPWRGLCKTSIKEIIDAARTVKQLKLKPHQKINLIRTYLLPRYIHKLVANPPPLGTLDLIDKELKTIIKEILHLHPSTTDGLIYTDKSHGGLGIQRVANIVKLAKLKHSILMTRSEDNAVKIALNGQEGMVKRYATSIGLQWPCGIEEIEETRKKLKRADTNKWKTLISQGQGIKEFFGDKTGNAWLYNPEMLRPSRYLDALKLRTNTYGTKAALHRAKRDIDINCRRCGVQVETLGHILGLCTHTKNKRIKRHDEICDLIAKNVSKEYVIFREPEVEVNGDRRKPDMVIKDHDKVYVVDVTVRYENNDSLNKAYKEKENKYKETAEIMRRDLKAKESRVLPVVIGSRGAVPRATIENLKVLGLQTKHALTASLIALRSSIEMANEFLDYDHTT
>R2B_DM_pol#LINE/R2 284-3370 [Drosophila mercatorum]
MVQMFNNEPRIAENNSVEYTPTVTRLGDHQVRNADANLQTMFPCRECERSFRTKIGLGVHMRHRHKDELDTARRRVDVKARWNEEELSMMARKELELTANGERFINKKLAEIFTNRSVDAIKKCRQRDNYKAKIEQLQGQAALISEANEPPTTQRRPSLSELEVTPSSSHSVPIAPPPIHSDDILLQELQGMSPVAVRRSWRVEVLQSIIDRAHISGKEATLQCLSNYLLEIFPNRNDRPSSATVPARRPRNRRISRRQQYARCIKSLLDGTDESALPNQSIMEPYWRQVMTQPSPSLCSNTVPRKGNMQEGVWSPITSRDLQVHKVPLTSSPGPDGITSQTARSIPIGIMLRIVNLILWCGDLPVPFRMARTIFIPKTVRANRPQDFRPISVPSIVVRQLNAILASRLTAAVSWDPRQRGFLPTDGCADNATIVDLVLRDHHKRYASCYIATLDVSKAFDSVAHDAVFNTVTAYGAPKSFVDYVRRWYSGGGTYFNGGDWRSEEFVPARGVKQGDPLSPVLFNLIIDRLLRSLPKDIGVHVGNAKVNACAFADDLMLFASTPKGLQELLNTTVKFLSSVGLTLNADKCFTISIKGQPKQKVTVVEQRTFCIGRARVQLKRSEEWKYLGIHFTADGRARYNPSEDIGPKLERLMQSPLKPQQKLFALRTVLVPQLYHKLTLGSVALGVLRKCDKLVRSFARKLLGLPLDVSVAFYHAPHSCGGLGIPSVRWIAPMLRTKRLAGINWPHLEQSEVASAFLSEELRRARDRAKAGVNELLSQPKIDTYWADRLYTSVDGNGLREARRYAPQHGWVSQPTRLMSGKAYRTGIQLRINALPTRSRTTRGRHEMNRQCRAGCDAPSHNHVLQRCHRTHGSRVSRHNGVVSYLKKGLETRGYTVYSEQSLHGQNRVYKPDIVAFRHDSTIVVDAQVVTDGLDLDRAHQSKVEIYNRQDLLTTLRSVYRARENIEVVSATLNWRGIWSFQSITRLRTLGILTAGDSNVISSRVVSGRVYSFKTFMFHAGFHRGMA
>R2B_NVi_pol#LINE/R2 This is gi|4322565|gb|AAD16096.1| reverse transcriptase rather than a translation of R2B_NVi, as that sequence has multiple frameshifts [Nasonia vitripennis]
GAAHVERLSAPVVTTVKVYNGQRKQRCLGAEGSCGRDLSSSNRGGVKRRTLRRSQPKEGGCLKCSNTPAKSGRRARNAQQADEPGDDEEIETHGPLTIRTADVEIVAIAKNPQACPKCLQGGTQLLCMGSWELSRHISKEHPSVDVTWVCGACQRRCTTLRSWSCHVPHCKGRQEPKDLPFKCEHCSLSFDSQIGLSQHERHVHPEVRNDKRAAEANKPKGKSGRRPSIWSDEDLLLIRELESEYHGARNINERIAEHFPDRTGRQVSDARRQGLCRAPRERSPQGPAEGVEAIEEVDEGEILKGKSWCHRWRCVGKRPPGEWRERTRRTSQSPALESSSQQDRECSPAVGSDEQIKDSDDDEFSDALGEISLPEPLSVERTTISPPPRDDWKGPMRWEICNASEEAGSYANWVTGLQELVRNNVLSEIGLDSLYDQLIQIMRHPSDDNEQDRLQLNARGPPRRGHRKNRRRRRLTAADRKRFAFARCQDLWNNNPKKLAELVIANDLSILQRRQAPGRTETQTLYNELWGRVGPNIEAPRRTEDPIHVSRIFTPITPQEIMGRIRRIKNDSAAGPDGVTKDDLRGRGVSIALSKLFNSILLAGYYPKAWRENRTTLLPKPEKDPADVKNWRPITISSMVSRVYSGLLDQRVRAVIKQCDRQKGFTEENGCFSNIQLLDDAVSNAKKAGGVITILDVSKAFDTVPHAVIQGCLEKKGIPETVAAYISNMYRDCSTAIRTRSGDVKIGMKRGVKQGIPCHLSFSIWVLEPLLERLQETSGVEIEGMNLSCAAFADDIVCFANTAPEAGRQLRMVADYLGRLDMSLSVSKCIAVEYVPHRKTWYTKNPGLEVNGNTVPSISPSETFKYLGAKVSPWKGLLEGFESDAFREVISRVQRLPLKPMQKVDLLQMYIFPRYTYGLITSPPAKAVLKTIDRIIRTRIKEILHLPESVSSSFLYTPRKQGGLGLLEVEKMVLIPALRNGLRARQSHDPVTRAAMNSNAADDRLKSYADALRLHWPLTTEELDTYKYQLRLSYAQKWAEQKWQDQGVEEFAQDPVGNSWLQRYDLLPASRYIDAIKLRTNTYPTRALMKIIDGRVDSSCRKCQGSSETLGHILGRCRYSKDKRISRHNEIKDLLKARLAKNHQERTEPQITVRGQRFKPDLVVKTNEGRVHVIDVTVRYEHRTYLDEGRTEKIGKYRQILSSLRRDLHSNAEEVIPIVIGSRGAIPRETRKALSKLGIGKSDWLTISLIALRSSLEIVNAFMDD
>R2B_TM_pol#LINE/R2 1-1467 (fragment). [Tenebrio molitor]
AFADDLVLLADSAKDANRLLSEASQFFADRGLELNVAKCCALSTGVVPSKKKCSARLRSYSRLNGAHIRQVAIGDVFKYLGNHFAFDGVSDISLEELNSQINNLMKAPLNSQINNLMKAPLKPWQKFKILRQTSDTIGWIHCLQSPSVSNKVLREADRKIKRAVKSILHLPVTIADSSIYASQRDGGLGVFCFSRKIPVILRSRWESLQEMADPALGAVLLQSERCMDRVSRLIKEDWRSDSEIKNSFRRSLENSWCGGGIHQVGIIKLASKYLLHPPAFWTGRDYVSTIQLRLNALPSRGLPSNPPDQRMCRTGCGRSESLSHILQRCGFVQGHRISRHNHVARKIRRLAESKGWEVREEPTIRTNEQVFKPDLLLIRDNELIVCDVSINWEGPSHFPHTIRINLISMPLQVLSNGCNNDFPRQTVRFLPFILGARGSWCGDNRSLVDALELTQRNIEDLILTCLTGSLIIYKSFMKSVWRRTVAGD
>R2C_NGi_pol#LINE/R2 373-3534  [Nasonia giraulti]
MTRSGRGLHHKKGHPDWNDQRNLAGKQHRKEIWSEEERLLLAKKEAELAISGARFINVELRDFTARSLDAIKGQRKRPDYKILVEKFVRELRVRGIRQGVASRSQQARAMAVAGAPAATSSGAPPVATQPPPSGRVLRSQVVEAPAMEIPVAESEGDSSGDELFEDVEPVRLSDLPPDRFTIYFAGLEIPGTEDIYAHRLHTICLMTTWRTKEEVRLELGLFLKDLFPSKGSQERPERTNLPDPRNRIERRRGEYKKCQDLWRRNKSTCVQRILKEDLSQGECLPRELMEPFWNATFTQNPGTAPVLPPPTEVYSSVWEPIRPENIKGNYPPQNTAAGIDGLTVGDLKGVSREMLARIFNLFMWCGKLPEHLCASRTILLPKKPGAKVPGEFRPITVTSVLIRTFHKVLAERLKVVPLDPRQRGFRESDGCAENVMLLDMTIRYHHERRRKMFLALLDMAKAFDSVSFESMREVLTTKGIPTPFIEYFMTHLEDSFTVLQHGNWQSGKIHPTCGVKQGDPLSPPIFNFIMDEMLKRLPKEIGVNLDGLFVNAMAFADDLSLVANTEQGLQILIDEATSFLGLCGLRANPNKCVTLAIKTIPKEKKTAIDPSSHFRIGNAVIPSLKRTDEWVYLGIKFNSNGRLISDAKPKLIKDLELLTKAPLKPQQRLWALKVIVIPGILYRGTLGSSTAGYLRSLDCVIRAYVRRWLRLPGDCPNGYFHAAVADGGLGVHPIRYKAMVDRLARLRKLEKSAYITGPEAARYLQRQVSIAENRLRDGANRIMSDASMLREFLRELLYKSFDGRPLENSSKVPGQHRWVEEPTRFLSGADYMNCIRARIAALPTAARCARGRLKDKHCRAGCGNVETLNHVLQFCHRTHGTRIGRHDAVVKYVVGGLKKRGYAVKEEPKIVLQDVVYKPDMVATKEGKTLILDAQVLGDQRDMRLAHEDKLRKYGAPEFKRKIRSETGSATIKSLSVTLSWRGLWGPDSVKGLLEEGVILKKDLKILSTRVLIGALAGWRRFNERTSMATSGRREEVTTRMVRRWKRRERVGVG
>R2Ci-A_pol#LINE/R2 gi|34392523|dbj|BAC82589.1| reverse transcriptase (partially identical to CiR2 in RepBase; latter seems chimaera of several elements) [Ciona intestinalis]
MPGCQSVVGSECSQCGRVFKTARGLSVHRRSKHPEAYHREHIAAPRVKARWSEEEMILMAQXEVQAPAGTRFINQYLHALFPSRSLDAIKGARGKSAAYKKIILEQRLAALVPVSPPNQISGAESPSQPSNTSQEVRQDPEERSLRLRDAIDLGHLRTDFDMTAVNPGHPDPVIREEIDREFLRWLEPNRRRRGYAKATRIALNAPGKVRRRAEYAAMQRQWKTKRGLCAREALEGTWKIPARTVSLSDQEAFWRPLMESQSKNDLREPAKVGETLWGLLDPITPDEVRQILGSMSSKAPGPDGHRLSDLRSIPIDQICSHFNLWLLAGYQPKALRMGESCLIPKVKDASRPQQFRPITLGSYVGRCLHKCLASRFERDLPISIRQKAFRCMDGVAENVMILRSVLDDHKKRLAELNLVFLDVSKAFDSVSHRSILHAVKRLGVPPPLLKYVEELYADSETFLRGSGELSPSIKVRRGVKQGEPLSPHLFNAVIDWALSSLDQSFGVTVGEARVNHLAFADDIVLLSSSQPGLQRLIDQLTTHLGESGLRVNSTKSASIRIAVDGKNKRWVVDPRDSVHVGGVRIPAVAVSGSYRYLGVNISAAGMRVDAADSLASKLANLSRAPLKPQQRLYILCTHLLPSIYHQLVLSSTSKKFLKYLDRCVRVAVRRWLRLPKDTPKAYFHAKCNDGGLGVPELQRVIPLQKAGRWLKMTRSQDPVVQAAVGLEYFQKLLERWSTPELYQWGGGGITTSGHLAVAQARSLYSSVNGRGLRQSGLVSTQFDWVRSGCSLLSGRNFIGAMQLRGNLLATKLRASRGRPRVDISCDCCRTPESSGHILQVCPRTSWGARIGRHDNVAKLVARESAKRHWKVIREPAIPTPAGIRRPDLVFSKGDTAIVVDVTIVPDNAELSDAHSSKVSYYDNGAIRGWVALNTGASHITFSSVNNNWSDCMAEESKRMLKLGLGLPNSIRGTISAVVLEKGFHMYLCFKRGTFRASY
>R2Ci-B_pol#LINE/R2 gi|34392525|dbj|BAC82590.1| reverse transcriptase [Ciona intestinalis]
MGEWPWVSWSLTVLVEKWRPFTILQPYPMPGQLRVDVYLPRKTSYLMDKNIYENTTSPGGGPLCGEKTHRSDVIIPPPGFAPSTDTASNTLGENVDASATTSSANPLSQEPGWCESCSKLFKSQRGLRVHQRSKHPELYHSQNQPLPRSKARWSDEEMVIFAREEIANRKIRFINQHLHKVFPHRTLESIKGLRGKNVRYARIMADLEAEMTSQPEAATSLCTETSENLASSNVLPQTRGWAENLVENIDTAHLANLGPLSQFEPGKPSSSTKEAINTEYNDWISKWLPSGAAHRERRANPPSTKLNARATRRLQYSRIQNLYKLNRSACAQEVLSGAWKVQSGELNLKEVQPFWEKMFRKESAKDRRKPKPTGEVLWGLMEPLTIAEVGSTLKSTTPSAPGPDKLTLDGVKRIPIAELVSHYNLWLYAGYQPEGLREGITTLIPKIKGTRDPAKLRPITVSSFICRIFHRCLAQRMETSLPLGERQKAFRKVDGICHNIWSLRSLIHNSKDNLKELNITFLDVRKAFDSISHKSLGIAAARLGLPPPLITYISNLYPNCSTKLKVNGKISKPIEVRRGVRQGDPLSPLLFNAVMDWALSELDPRVGVQIGEQRINHLAFADDIILVSSTKIGMVSSINTLSRHLAKSGLEISAGKEGKSASMAIVVDGKKKMWTVDPLPRFKVNSQKIPALSITQQYKYLGINIDAQGARNDAARILTEGLAELSRAPLKPQQRLYLLRVHLLPKLQHGLVLSSCAKRALTYLDKSVRSAIRRWLTLPKDTPTAFYHAKACDGGLGITRLEHTIPILKRNRMMKLTLSEDPVIMELVKLTYFTNLLHKYSNVKLLNSWPVTDKDSLARAEASMLHTSVDGRGLSNCSDVPRQSDWVTNGASLLSGRDFIGAIKVRGNLLPTKVSAARGRQREITCDCCRRPESLGHILQTCPRTWGPRISRHDSLLKRVRNQACLKNWTPIIEPSIPTNIGLRRPDLVLAKGNIAFLVDATVVADNANMQLQHEAKVEKYNNSDIKEWIKVHCPGVDEVRVTSLTANWRGCLYGGSASFLTEDLGLPKAELSLLSAKINEKGYYLWCAHYRGTARLWNRPLRS
>R2Ci-C_pol#LINE/R2 gi|34392527|dbj|BAC82591.1| reverse transcriptase [Ciona intestinalis]
KFKQSKVKHNQKENKSKRQIRRAQYARTQINYKRNRQQAINSILSKQWRELDDRGPPLEHVLPFWQKLLEKSSEHDTRQPEPVSGPIWELVEPIVAEEVRLVRKSMPTSAPGPDGIRHKDFMAVQPQILADNFNLWLLTGYQPKSCRLGRTILIPKEPGTRDPAKHRPITINSLLIRCFHKILSNRIMKLIPLSPQQKAFRPGDGIAEHIWNLRHILNQHKLEKKELNLAFLDVRKAFDSVNHSTLLLAAGRLGVPPPLLKYIENLYEGSSTTIIANGERSPRIRVRRGIKQGDPLSIPLFLGVMDWAMSNLNPNVGSSIGGKSINCMAFADDLVLISRTQIGLQTNLDTISYNLNQSGMTLNSEKCATLRLAVDGKSKKWWIDHRPFLRVEGAKCGAMDIEGTYKYLGVRVGAGDTRAECKEKLMSDLKETTEAPLKPQQRIFILRNYILPRSLHILTFTNTTARLLKQLDSAIRIHVRRWLKLPKDTPLGYLYSDYKDGGLGVPRLLSRVPLLRIRRMAKYNTSEDPTTVALRSCHTFTSAAVKWAMPPKISNVVISDKRKERDFHRSELATSIDGSGLSCANTTPRAHQWVVNGTGLLSGKNYIGAINARGNLLHTASRAARGRPQRTTDCDSCHRVETLSHILQSCPRTHGPRIRRHDKVTKVIAEAAGKKGWKTIAEPRIPTPEGIRKPDLILYQHGRAIVMDTTIVSDSADLSMSHQHKVIYYQNECIRSWVQEATGATEVTWSSFSANWRGCIADESRDLLLHDSTSQKTAA
>R2Ci-D_pol#LINE/R2 gi|34392529|dbj|BAC82592.1| reverse transcriptase [Ciona intestinalis]
RLVCTACRGVMVTARLAREHLLTHGFGVATFACGKCTREFSGLSAVSGHYVRCDGSRVTETRLAFVCEFCPRSFNSRSGVSLHCKSSHRAEYEAVLAARDKRTRRGYHEDEIEILAKVEIGLPPGVRKINIELATLGAVDRTCEQIRQIRKSARYRRCLEELRSQGRATSPGRTQSEPEEDRLVSEPSSEIPDEFLNPLPAEELEDLCAVDLSAAMRHLHGEGWPSDAVEQLDVILKRHHHDVFKRRRQAHNKGQRKSNAEQRYKPSTKRRRAGFASVQRLWDTDRRRLSQVVFDGAKVASSFPDIRDVEEVYFGRFAGGDEGEVVSDNEPEPKLGGQFEGLSKPFSVVEVSKALREVKVASASGPDGVSVSGMTKIGARVLCMLFNVWQFTGRTPRWTKENRTTLIAKSASAAEDVGDWRPITIGSHVVRLYAKLLSRRLGSCVQLNLCQRAFRDVQGCAENVMLLSGMIRDAKARSRDLNLVFLDLAKAFDTVSHSSIVKALRRQQVPEKFVRIVQDLYDGAVTTVSVGGRATPQLVVKRGVKQGCPLSPLLFNLVLDELIDELSSSFGYTLDDGSKLSVMAFADDLVLSSGSLAGLRKLIETTQQFLLRCGMGLNVQNCTSLGWKSMVGGKQVRLRTEPFVRVGDSELACLGPNSTCRYLGIHFGMVGSCRIRRREIRESLLRLASSALKPEQKVFMLRSFLIPRWRYSVTLTRVTVSFLSWIDRVVRMRVRAILHAPHNLSSEWLHLSIAKGGLGIPCMVEETWFSKRRLLEAMRDSECPLVRNSREVQCLSDDVERLRVKL
>R2Cs-D_pol#LINE/R2 gi|34392531|dbj|BAC82593.1| reverse transcriptase [Ciona savignyi]
GLKVQPSKCHSLGISHTRGKTSVTRVRVNPFLNIDGTDLPVVPPGSWIKFLGIMIGPHGSCRLQRNTISEALKRLMGAKLKPQQKIYMLKNHLIPRWRYSLSISEQTQQTLYWVDREVRRTVKKILHAPGCLSDNFIHLDSRNGGLGICSMTEWTYVAKMRLRSRLADSLDPAISVLAPTIYSRTHAVIGARLKRMLGEEPTIKSLQQHRKKTLSEQVQGYGSEHFNNSYSNSWLSGSTRLISGRNYVQACALRTQTLPTREAVSRGRSGTNNICRNCGLEEETLSHILQNCHRTNKIRIHRHNAVLQILTQHLCRRNWRIQEEPLIPTPGGNVIKPDVLATDPEGNLYVIDAACPYEGGGDSLSRAAAAKVEKYSAYETSIRRYIGRTPRKTIFVGFVVGARGAMPPQTQEFCKQVGLGKGKLHLMSVRAIEGSLKIFRLFMAL
>R2Dr_pol#LINE/R2 gi|34392533|dbj|BAC82594.1| reverse transcriptase [Danio rerio]
MESTAKGKSYWMARRPVEGATEGSLGRVPFVTRDPKRKPEAKRTLTHGLGLRECSVVLTRLIEGRRGRDHTPSGWNAQRGMPNDESSVEEPNGPIPSNPIPTGTQALPEPMADGEQGEHPGVVVTLPLRDLNCPLCGGSASTAVKVQRHLAFRHGTVPVRFSCESCGKTSPGCHSVLCHIPKCRGPTGEPPEKVVKCEGCSRTFGTRRACSIHEMHVHSEIRNRKRIAQDRQEKGTSTDGEGRAGVERADAGEGPSGEGIPPKRPRRARTPREPSEPPANPPILSPQPDLPPGGLRDLLREVASGWVRAARDGGTVIDSVLAAWLDGNDRLPELVDAATQRTLQGLPAGRLARRPATFVAPNRRRGRWGRRLKLLAKRRAYHDCQIRFRKDPARLAANILDGKSETSCPINEQAIHEHFRNKWANPSPFGGLGRFGTENRANNAHLLGPISKSEVQTSLRNASNASTPGPDGVGKRDISNWDPECETLTQLFNMWWFTGVIPSRLKKSRTVLLPKSSDPGAEMEIGNWRPITIGSMVLRLFTRVINTRLTEACPLHPRQRGFRRSPGCSENLEVLECLLRHSKEKRSQLAVVFVDFAQAFDTVSHEHMLSVLEQMNVDPHMVNLIREIYTNSCTSVELGRKEGPDIPVRVGVKQGDPLSPLLFNLALDPLIQSLERTGKGCEAEGHKVTALAFADDLALVAGSWEGMAHNLALVDEFCLTTGLTVQPKKCHSFMVRPCRGAFTVNDCPPWVLGGKALQLTNIENSIKYLGVKVNPWAGIEKPDLTVALDRWCKRIGKSLLKPSQKVYILNQFAIPRLFYLADHGGAGDVMLQNLDGTIRKAVKKWLHLPPSTCNGLLYARNCNGGLGICKLTRHIPSMQARRMFRLANSSDPLMKAMMRGSRVEQKFKKAWMRAGGEESALPRVFGANQYQEGEEVANDLVPRCPMPSDWRLEEFQHWMGLPIQGVGIAGFFRNRVANGWLRKPAGFKERHYIAALQLRACVYPTLEFQQRGRSKAGAACRRCSSRLESSSHILGKCPAVQGARIRRHNKICDLLKAEAETRGWEVRREWAFRTPAGELRRLDLVLILGDEALVIDVTVRYEFAPDTLQNAGKDKVSYYGPHKEAIARELGVRRVDIHGFPLGARGLWLASNSKVLELMGLSRERVKVFSRLLSRRVLLYSIDIMRTFYATLQ
>R2E_NLo_pol#LINE/R2 3-1433 Fragment [Nasonia longicornis]
KFSXVDSRSQSXRRRXYLXKCGLXVNAXKCMTVSMLTVPREKKTVIDPKMKFRCLGRTLPAVSRSSEWKYLGIPFTPEGKWTGNPLQSLMTSTEILTKAPLRPQQRLFGLRCVVIPSLYHLLVLGSANISLLRKMDKRIRTIVKKWLDLPNDTPSAYFHAAVQHGGLGIPSLRWMVPVQRLKRLKNLPYYRPDQPEYYHLSKEIKTTLNRLKDKNVQLVTRLDVDKRMAELLYKAVDGSALKGSNAVPSQHQWVREGTNFLKGTDFIGLCKLRINALPLRCRTARGRPKERLCRAGCHNQETLNHVLQHCPRTHEMRIKRHDAVVNYIAKSLNEQGFEVDCEPHIQGPAGLRKPDIVVKKEDAAIVVDGIIAAEQADXKRVHNEKRKKYXDLKPIIKEKYGVEKVEFTXATLXARGLWSSDXAXDLXRFSVIKSKDLKVISTRVLVGGMAIFHDFNRRTSRSXGRRRGQEPPRQGEG
>R2I-1_PI#LINE/R2 379-5490  [Phytophthora infestans]
MLADPAALAAGLARAPPPPSAPQDPSPAFPAGPAGQNPRAAAPARVEVHTVVAPPGRAGGMLPDPGLVEEPIQATYAHDAAQFECALCPYVAESMAVLVQHRRSAHRGTRFKDIFTSGCQCSLVFYARIVAASHAVACARRNQRAVPPAPTPVAPTRPEATPQPTGYLAAAMTAAAAAASSDTVVAAATNMQSAVPAAAKTTGLQLVPPELEPALPQRASCHAGKRRRLNADEAVTPCTPTARVSPQTEVAMAPHDAPQDDTVLQREAAEPQPDPAATPGAQVQRVEDTTAAQDDTVQQDHDADTAQVSPPRRTPTRWGPRPSSTQEPSPMTGEPAATLAARRPLTPAATGTRATRWGPCHRAIGAAAIARLVTGLSTEPAQPQRRQPPPPQEPPSQPEPLAAAATAAADIAATVAADIAAAAANAAMDVDGGPAADETWLLRFDGACRRNPGPGGAGAALFAPSGAVVWTCSHYMPSRSETNNTAEYTALLLGVQSAVHHGASHLEVEGDSSLVIAQVKGTFACRNARLRQLRNRVRHALRSVDTHKLRHIDRQANAHADRLANRALDQRRTSSECGTHGSCMDSCLAVPTALAAQETPPAAPPSTSATPAEGNAMDDIAAEIAARDEGETFPVLPIGPGSAPERQPRLRLRQLSDEERDAAADALQELADTMASKIEDADSWTSGEGYISSIPERIREVLQPYATAPPQPGRSRRQQRRRPPRVTRNQREHRLDEALDDMAATQQATPRDQRAVRRARRRVGRVRASMAQQELRHEFAKDESKCVAKILKTASTETAAEDEHPETCPIDAATLHAHFTGVNAPRTDFDYDATSGREFRAAMSDLPPATVEIDAFDAELTIDEVEDQLTRAAKTSSPGHDGIDYGIYSRFAAQLVPLLHAVFQFCWRHRRVPRLWKVGIVRLIHKKGDPRQPTNWRPICLQPTIYKLYSGLLAHRLSRWLEGNDRLPMAQKGFRAFNGCHEHNFMATTLLDQTRRQHRKLYQVWYDLRNAFGSLPQQLMWRVLRHLGVDSGFIDRCRDIYRDSAFVVANAADGATDPVRQEVGVYQGCPLSPLLFVAALVPLVRRLEKLDGVGVPLADGVRPCTTAYADDLKVFSDSAAGIRKCHDTVAGFLAWTGLRANPGKCASLAVTTNARGNPTRDSSMRLEVHDAAITTLSLHESYRYLGVGDGYDHVRHRLQLEPKLKQLKREAVALLTSGLAPWQVVRALKVYVYPKVEYALRHLRPLQSQLQAFDRVVSKGLRHLLSLPRSATSEVLYAPTSSGGLGLQPLVELHRALQLAHAWQMLHSKDPAIQAVARAQACQVVRKRYRLQEDHWRGRDDELVRSFLNSELAASPHAEVLRRNGDIASLWSDVQRWLRIYHLRFEHCDETEAHGPLSFRVPHHNKWLTHKTVLRHVKLHLKIRHQTRWKGMVDQGKTVRVHGGVGAKFMTTGAGLSDDDYRFGVKGRLNQVDTNSVLKRKRLRAHTTCRDPTCSSAETLAHVLNHCESNMDAIRQRHDDALEQIGSKIRGALDRAKSPTELRLNQTVPEYTGAALRPDIVLRNVAAKTMVIADLAVTFEDQAARARHSSLQLSHDHKTLKYQPIVAELQHKGWRVQTAAIVYGTLGSVQPSNFKAYTEKFKLHKREARQLDLQLSSHCIRASHRIWGWHCRQHRDRQRSGTASRASRGSGGAPRRTSQAPARR
>R2I-2_PI#LINE/R2 378-5813  [Phytophthora infestans]
MLADPAALAAGLARAPPPPSAPQDPSPAFPAGPAGQNPRAAAPARVEVHTVVAPPGRAGGMLPDPGLVDSSPAAATAATPAPVAATATTARAAARVAVEHHAHAEPNQEHLPMARVLVEPMQVDECSSCDRSTLTADDGSGDDVAAPSSMLSNDVAAPMDVDSGTSCPPTLQQPLQRPRALHVGSKRRRLDADDGEEAHQLQEEEEAGIHAPALRLSAASAQPASVLAVYTHNASRFDCTLCAYTAGSFASLLTHRNSRHRRTAFLDRFSAGCACGVPFASRLAAARHAQACASLSSAPSAEASSAAGTSSPTADGADSTVSAVAHAEPGLPHHNDTELTASPPLVSSSDVEVQATKTEATDNRWGAPLPRVLVASRIAGRLAQVPPPRWGPPLPRTTIAARIATRLAATPAPRWDPPLPRSLVVSRIAARLLPALPDAPACEEEAKDSDTMDWAPTWTNEETKESEPHDEAPGQVDEETIDDADGEWLLRFDGACRANPGPGGAGAALFKPSGPVVWTCSHYDPSTTATNNTAEYTALLLGARAAADHGVTKLRIEGDSTLVIQQVRGIFATRSTRLRALRNKVKLELARVGSFSLHHIDRQANGHADRLANAGLDRRRTKLECSVHPDGRGCTNTSVATAAPTAPAAPLPSARPPASTAAPSPDDDHSDQGDIDDGEVYAAMCISPDAVPHRRPRLRLRRLTDEESEEAGNVVERLAASLAAKIADAPDWETAEGYITALPYALYDKLQPYSQSQHQPPRQQQQQQRQRPRQQQQTRQRRQRRCKRGGGSQHRQRKTRRRRPPRVTRHHREHRIDEALDDLHALESRRPQDRTAISKARRRVGRIRSALDQHQLRHRFDTDEKACVDGILAAARDKDRAASVTTTAQTAAPPHSAPASAPSSAVDDGICPIPGDLLHAFFTDVNTPRTEFDADSPIGARFREALAQLPAAIAATELLMEPPSPDEVEDQLQRVRGTSSPGLDGVGYDVYKTFTQQLLPALHAAFSRCWTDQRVPQSWKLGVVRLLFKKGDRQDPANWRPICLQQAVYKLYAGILAHRFTRWLDANTRHADAQKGFRAVNGCGEHNFLAATLTDNARRRRRELHVVWYDIKNAFGSVPHELLWEVLRRMGVPAQFIACCQGIYDAAAFTVGNAADGTTAPIQLRLGVFQGCPLSPHLFTAVISPLLHALKRLPGTGVQLSAVDRPGASAYADDLKVFSDTKDGITRQHQLVTDFLRWTGMVANPSKCSTMSVQRDNRGVLKTANLTLQLDGAQIPALGMTEAYAYLGIGDGFDHVRRRVELAPKLRELKADTTALMQSGLAPWQVVKALKVYIYPRVEYALRHLRPFQQQLQGFDRHLARGLRHLLRLPTSATTEFLYAPTSRGGLGLLPLTEVHGALQIAHAWQTLHSPDPAIRRIARVQLRQVADARHRLDAEHWKERGEELCERLLNSQLGTSAHAPPKRRNCDIGSLWVDVQRHLRSLGLQLQTAPADTHTGAPAQPLQLRVPHHDKWLTHKDVLRHVKLHIKNNHWHRWTSMRDQGKTARAHGGEGSGFLTQPRGMWEADYRFAVAGRLNQVDTYSVLKRRRLRSHDRCRQPGCHRAETLAHVLNHCPGTMDAVRGRHDGALKRIERELHASATDRRDRVELRVNQTVPSLAGPALRPDLQLYNHTKKTVAVVDLAVAFEEQASDDASSSALSLIASHKRAKYDRIKRHLERQGWKVHLSALVYGSLGAVASGNYQVYTTHLGLLKRDAKRLDRQLSVECIQSSRRIWNLHCSQHRTRQHQARPSQGPRGSRATETGGTPSQTSRR
>R2I-3_PI#LINE/R2 57-6005  [Phytophthora infestans]
MPRSLASEPVHSSASRLPSQAPPTSRSGAAHTPPPSLQARPLASADAGLAATALASPQDPPYDVAPPGRAAGRLPDSVSPGATLSAATARALAVRHWPLELDSDSSDDEDAQDPHAAAPGPPADVASVLAPPGRAGSMLADPAALAAGLARAPPPPSAPQDPSPALPAGPAGQNPRAAAPARVEVHTVVAPPGRAGGMLPDPGLVDSSPAAATAATPAPVAATATTARVAVEHHAHAEPNQEHLPMARVLVEPMQVDECSSCDRSTLTADDGSGDDVAAPSSMLSNDVAAPMDVDSGTSCPPTLQQPLQRPRALHVGSKRRRLNADDGEEAHQLQEEEEAGIHAPALRLSAASAQPASVLAVYTHNASRFDCTLCAYTAGSFASLKTHRNSRHRRTAFLDRFSAGCACGVPFASRLAAARHAQACASLSSAPLAEASSAAGASSHTVDGADSTVSAAGHAEPDLPRHNATELTASPPLVSSTDVEVQATETEATENRWGTPLPRVLVASRIAGRLAQVPPPRWGPPLPRTTIAGRIATRLAATPAPRWSPPLPRSLVASRIAGRLLPALPDAPACEDEAKDSDEMDWEASEPHVEAPGPVDEETIDDADGEWLLRFDGACRANPGPGGAGAALFKPSGPVVWTCSHYDPSTTATNNTAEYTALLLGARAAADHGVTKLRVEGDSTLVIQQVRGIFATRSTRLRALRNKVKLELARVGSFSLHHIDRQANGHADRLANAGLDRRRTQLECSVHPDGRGCTNTSVATAAPTASAAPSTPTRPPATTAAPFHSDQGHIDEDDERRADIDDGEIYAPMTLGPDEVPARRPRLRLRQLSDEELEAAGAIVERLSASLSAKITDAEDWGTAEGYITALPHLLYDKLLPYSRTAPRHQRPPRPSRNQQDHPQPRRDQPQRNVDEQQHAESQQGEDQRQQQPPTRRRRRRGKRRGRRQRRHPRQPGQSTRASQQSRQRRPRPPRVTRHHREHRIDEALDELHTLERARPQDRSAIDKARRRVGRVRGAINQHLLRHRFDTDEKACVADILEKAHAARAARTAQAAGAATSTGGAATAPTQQAATSALGDADDGTCPILADELWQYFTGTNTPRWEFNPATPVGEAFRTAMARLPPATRLRELLTEAPTADEIETQLQHVRGSSSPGLDGIGYDVYQRFAQQLLPVLTASFKRCWTAKMVPQSWQVGVVRLLYKKGAHDDPANWRPICLQQAIYKLYTGVLARRLVRWLDVNDRHAPGQKGFRAVNGCGEHNFLAATLIDQARRKRRSLYEVWYDFRNAFGSVPFQLLWDSLQRLGAPADFIDMCKGLYHQAAFVIGNAADGPTAAIRQQVGVFQGCPLSPQLFNVAISPLLFALRRLPETGVQLSGDDRVGVSAYADDLKTFSSTKAGATKQHELVAAFLAWTGMKANAAKCSSMGVRRNSNGATEADNLDLALDGTPIPSMTHMQSYTYLGIGDGFDHVHRRIELAPKLKTLKQDTTALLESGLAPWQVVKAVKVYLYPRVEYALRHLRPEDQLLESFDLHLRAGLRHLLRLPKNANNDFFYSPVSRGGLGLLPLVELHAALQIAHGWQMLNSTDPATRRIAREQLHQIADARHRLDKAHWKERGDELCQLFLNLDLGTSAHAPPKRRNCDIGSLWVDVRKNLQAFGLKLETAPADAESGTPALPLQLRVPHHEKWLTHRDVLRHVKQHLKNKHWRAWCAFQDQGRTARAHGGVGSSFITRPRGMWESDYRFAVAARLNMVDTSATLARRRLRAHDRCRYPGCRWKESLEHVLNHCPGTMDAVRGRHDGVLREIEHALRAPSGARRELRVNQTVPGLPGPALRPDIQVYNHDQRTVAVVDLAVAFDRQDRDDPETSGLAKAAAEKKAKYTGIQRHLERQGWKVHLSALVYGSLGSVAPNNYKVYTEHLGLLKRDAKRLDRTLSVACIQSSRRIWNLHCAKHRARQHQTPSQSRGRRVTETGGAPSRTDRR
>R2I-4_PI#LINE/R2 379-5526  [Phytophthora infestans]
MLADPAALAAGLARAPPPPSAPQDPSPAFPAGPAGQNPRAAAPARVEVHTVVAPPGRAGGMLPDPGLVEEPIQATYAHDAAQFECALCPYVAESMAVLVQHRRSAHRGTRFKDIFTSGCQCSLVFYARIVAASHAVACARRNQRAVPPAPTPVAPTRPEATPQPTGYLAAAMTAAAAAASSDTVVAAATNMQSAVPAAAKTTGLQLVPPELEPALPQRASCHAGKRRRLNADEAVTPCTPTARVSPQTEVAMAPHDAPQDDTVLQREAAEPQPDPAATQGAQVQRVEDTTAAQDDTVQQDHDADTAQVSPPRRTPTRWGPRPSSTQEPSPMTGEPAATLAARRPLTPAATGTRATRWGPCHRAIGAAAIARLVTGLPTEPAQPQRRQPPPPQEPPLQPEPQAAAATVAADIAATVAADIAAAAANAAMDVDGGPAADETWLLRFDGACRRNPGPGGAGAALFAPSGAVVWTCSHFMPSRSETNNTAEYTALLLGAQSAVHHGAKRLNIEGDSHLILSQVRGAFACNNKRLRSLRNRVQASLRQLDWYRLQHIDRKANQHADRLANRALDLRRTVTECGPHAETRNRCFQTPQPLVEPGETHCVPGSDEVLAANTAMEDATAVPTEDDEAEVAARDGGEVFPTIAIGPDSAPAKQPRLRLKKLDEDDFDAAAAAVTRVSEELASKIVDAGDWTSGEGYISAIPERLRAALRPFALPTQPARPQPREPRMQQPPRRPPRVTRDHLEHRLDEALDTMENVQRSTPQNQKAVRRARRRVGRLRSAMDRTRLRKKFATHERECVAEILRRASTEEAANPSQEKCPIDRATLHEYFTATSTQRTPFDYDSAKGTEFRTFLEVMSTPSHETSALTAEPTLDEIEDQLAHVKAGSSPGHDGVGYDVYRRFQVQLLPLLHAAFRFCWRHRRVPALWKVGFVRLLHKKGDPQQPNNWRPICLQTAIYKLYSGLLARRLSKFLEANELLPMAQKGFRAFNGCHEHNFVATTLLDQTRRMHRRLYQVWYDLRNAFGSLPQQLMWGVLRQLGVTEEFVARCSGIYEDSYFVVGNASDGATEPVRQEVGVYQGCPLSPLLFITALVPLLRALENQDGVGVPLADGVRPCATAYADDIKVFCDSATGIQRCHALVTRFLEWTGLQANPAKCAFLPVTRSQHSNPTRDRDIELRIHGEAIATLGLQESYRYLGVGDGFDHVRHRLQLEPKLKQIKREAVALLHSELVPWQILKALKVYIYPKVEYALRHLRPLKSQLQGFDSAIVRGLRHLLRLPENSHDGLFFSPTSAGGLGLLSLVELHEALQVAHAWQMLHSKDPAIRAIARTQVGQVARKRFKLVEEHWRGREDDLAQRFLNTELAASPHATETRRNGDIGSLWNDVRDTLQTLGLKFAAGDEEEAPGLLQLRVPHHTKWLSHSTVLRHVKLHMKLRRMDTWKSKVSQGTTVREHGGVGSRFITAGAGLSDAEYRFAIAPRAHLIDTNSTLKRRRLRANDTCRAPGCSYTEPPAHILNKCSPNMDAIRKRHDDALERIADALRRKVEKSGGRLEVAINKTVPEYDGAALRPDIVLRNTETKRAIIADLAITHENQPTDATTSSALQQSRDNKITKYQTVAAAMMRAGWRVRVTGIVYGSLGSVLPSNFKVYTELLALLKRDARRLNRQLSSHCIRASARIWSAHCRRHRERQRSGNASRASRGSGGAPRRTSQASARR
>R2Nvec-A#LINE/R2 185-3598 [Nematostella vectensis]
MLRGTGNMNDKRDGSATADPTSALLGAVGDGSLVCNLCGLACKSRGGLSIHRRSKHATVYHAERQPAPRAKARWTNDEMILVARKQIASEKSRCSAVVEGMREAVPHRTFDAVKSLKTKNRNYTRILEQIRAECSEEEVIESGVLKDRTENVCVQTTSNVPGSAGRAASVELEGNIQVGHQLAQKTMAGNNSRKQPANHTNWAEFNIEEGNITLRKSKRKANGMPDATHRPGPPTVDSLKHPVCLLQGAADKRDEPHTVEQLYYNIEEGMPLAEEQQWSEKLFDAIDSSLLSVEVELGRIVPGCPDEETRQLIDREFLDFIHSYSREKPPQRGLAKSKPPPKGPKSLRRQQYRQLQRLWDKNRSAAAEQALTGKWQEVRTAAGVPLSLMEVPWREIFETPSTTDVREPAPAGPVLWQLLRPVTIAEVEDAISSKKSASGPDGVPCAALQTMGAASLAAHFNLWLLAGTQPKRLTECRTIFVPKEVNTHLPLHHRPITIGSVVVRLFHQILGKPMEAVLPLGSGQRGFRKGDGICQNIWLLHTLIRRSTDLLRPLKLVFLDVKKAFDSVSHESLLIAAKRLGVPGPLLTYINELYSRSETVFEVGGESSGSVKVSQGVKQGDPLSSTLFNCVIDWAVSDLDPHIGVLLGESRVSFLAYADDLVLLSETEAALTSQLNSIEKSLAHCGLKLSTGDSGKSASLNIVIDGKAKRWVVNPTPFLRASGGEIRSLVANETYKYLGINIGAQGVKAAEYNAFKEALDNLSRAPLKPQQRLFLLKTYLLPQLHHSLVLSRTTGKLLNSLDALVRKAVRGWLKLPHDTHRAFFYAHQADGGLNVPSLYHLIPLLRRSRYERLTRVEDPEIREVSRTDYFKRVLGAAAAATTVAGHRIDSKVTLRLAWREALYASADGRGLSQCPLVPEVHSWVTDVSGLQTGSQYISAVRLRGALLPTAVRKSRGRGGVNSNCDCCGRGQPEFLGHVLQTCPRTWGSRISRHNHVLSLIAKACRSRRWQVLEEPIIQTPAQLLKPDLVIWNHQAAYVVDVSVPGDNTPLSTCHNRKVAYYSGESVREWVRSKTGHNPTVSSVVINWRGAMAKESYRLLTKDLRLAKTLPRLLVLRVLEGGHGIWLNFHRSTFAVGVT
>R2Ol-A_pol#LINE/R2 1-3285 [Oryzias latipes]
NCPLCGVPSGGLRLLGKHFAVRHAGVPVTYECRKCAWRSPNSHSISCHVPKCRGRARVPSGDPGIACDLCEARFATEVGVAQHKRHVHPVEWNKVRLERRGARGGGIKATKLWSVAEVETLIRLIREHGDSGATYQLIADELGRGKTAEQVRSKKRLLRIDTASNSPDDAEVEEERLESLAVRSSSRSPPSLVATRVREAVARGESEGGEEIRAIAALIRDVDQNPCLIETSASDIISKLGRRVDGPKRPRPVVREQTQEKGWVRRLARRKREYREAQYLYSRDQARLAAQILDGAASQECALPVDQVYGAFREKWETVGQFHGLGEFRTGARADNWEFYSPILAAEVKENLMRMANGTAPGPDRISKKALLDWDPRGEQLARLYTTWLIGGVIPRVFKECRTKLLPKSSDPVELQDIGGWRPVTIGSMVTRLFSRILTMRLTRACPINPRQRGFLASSSGCAENLLIFDEIVRRSRRDGGPLAVVFVDFARAFDSISHEHILCVLEEGGLDRHVIGLIRNSYVDCVTRVGCVEGMTPPIQMKVGVKQGDPMSPLLFNLAMDPLIHKLETAGTGLKWGDLSIATLAFADDLVLVSDSEEGMGRSLGILEKFCQLTGLRVQPRKCHGFFMDKGVVNGCGTWEICGSPIHMIPPGESVRYLGVQVGPGRGVMEPDLIPTVHTWIERITEAPLKPSQRMRVLNSFALPRIIYQADLRKVTVTKLAQIDGIVRKAVKKWLHLSPSTCNGLLYSRNRDGGLGLLKLERLIPSVRTKRIYRMSRSPDIWTRRMTSHSVSKSDWEMLWVQAGGERGSAPVMGAVETAPTDVERSPDYPDWRREENLAWSALRVQGVGADQFRGDRTSSSWIAEPASVGFAQRHWLAALALRAGVYPTREFLARGKEKSGAACRRCPARLESCSHILGQCPFVQANRIARHNKVCVLLATEAERFGWTVIREFRLEDAAGGLKIPDLVCKKADTVLIVDVTVRYEMDGETLKRAASEKVEHYLPVGQQITDKVRGRCFKVMGFPVGARGKWPASNNTVLAELGVPAGRMRTFARLVSRRTLLYSLDILRDFMREPAGRGTRVALIPAATGAAN
>R2_AM_pol#LINE/R2 585-3968 gi|3559770|gb|AAC34903.1| reverse transcriptase (Parascaris equorum R2 rt gi|903665|gb|AAB02297.1| 91% similar) [Anurida maritima]
MNRKNNYTRGNRFSSGSPGNFVVVRDPAQDLPFKCAFCERTFTTSNGKGLHELRSHPKEYNMRVPVAKKRARWSEEELSQLAEAEHDLKSKKQYASELDLSRDLEGCMVGRSLESIRGQRKLPRYVEIFNRLSNSRASIPEIGEGDEEANSVGSDEVFHASGHGTGITEALEVLVSKRPGEAFREEVLNGIVRAKLEGSEVFVRLEQYLSRMFVGQSSLASTPCSSGEGKLPLTCSGSNKKEQRSDLFSRFPEKGPSVSVSAPSVSDMGRKRRKALSRNEATQVREEFVEFARNVDPIPRRKCARVNEGLQGNQRLPKEKPMTARAKMRHLRLLRYRRLQELYKKDRSLAAKQVLQDMLDSKPGRNPEAVKYWAETMGKESTGIDVSVMTGRPRYRDNVWSPIYPGEVSAAVKLMDSSGATGPDGFSVRSLKCTPSRVLAKVFNLFLLEEKLPAFLMTSRTVLVPKVKEPKAPTDYRPISVSSTLVRLFHKILARRLTLASGLDSRQRGFVPVDGCAENLVVLESAIRSAKNYKRSLFVASMDIKNAFGSVAHEAIFEALSKSGAPDSFVTYVRNCYDGFASVVKLGRDTAQTTVRQGVLQGDPLSPILFNLVIDQIIRSLPETVGVQLDANTKLNSMAFADDLILLSSSEAGMRRMLGVLAGVSSKFGLIFHPGKCKYLAMIWAGKQKKMKIATDLSFEIGGGFMTPVGVTETWKYLGAYLGQIGIQPARLSLQTFLERIAKSPLKPQQKLYLIRVHLLPKLIYPLVMAPIRASMLNKLDRMVRVALTGKDGILHLPQSVPSAFFYAPIGEGGLGLMELRTSIPAMVKARFERMMNSTCHHVRAAAKGAANSNRIALANRFLRKTADGIPVTSAKLVKEYQAAKLHGSFDGKPLSEAGRVKGIHSWTCDGRMVMTGQAFCEALKIRINALPCLSRYNRGTEKPRECRAGCKTTESLNHVLQVCPRTHDMRVARHDKLVNRLGGYLSQKGFEIHTEPRIITSLGLRKPDIIAIKGEKGVVLDAQIGGAANLNAAHDAKMCYYSSSPEIKEWVTGKGAPDVSYGACIVSPQGIMSEESWKTLRGLGFSKGMLNSLVVTVMEQSTYVWHVFNRSTASYGWKRRRKRKWD
>R2_BM_pol#LINE/R2 620-3964  [Bombyx mori]
MMASTALSLMGRCNPDGCTRGKHVTAAPMDGPRGPSSLAGTFGWGLAIPAGEPCGRVCSPATVGFFPVAKKSNKENRPEASGLPLESERTGDNPTVRGSAGADPVGQDAPGWTCQFCERTFSTNRGLGVHKRRAHPVETNTDAAPMMVKRRWHGEEIDLLARTEARLLAERGQCSGGDLFGALPGFGRTLEAIKGQRRREPYRALVQAHLARFGSQPGPSSGGCSAEPDFRRASGAEEAGEERCAEDAAAYDPSAVGQMSPDAARVLSELLEGAGRRRACRAMRPKTAGRRNDLHDDRTASAHKTSRQKRRAEYARVQELYKKCRSRAAAEVIDGACGGVGHSLEEMETYWRPILERVSDAPGPTPEALHALGRAEWHGGNRDYTQLWKPISVEEIKASRFDWRTSPGPDGIRSGQWRAVPVHLKAEMFNAWMARGEIPEILRQCRTVFVPKVERPGGPGEYRPISIASIPLRHFHSILARRLLACCPPDARQRGFICADGTLENSAVLDAVLGDSRKKLRECHVAVLDFAKAFDTVSHEALVELLRLRGMPEQFCGYIAHLYDTASTTLAVNNEMSSPVKVGRGVRQGDPLSPILFNVVMDLILASLPERVGYRLEMELVSALAYADDLVLLAGSKVGMQESISAVDCVGRQMGLRLNCRKSAVLSMIPDGHRKKHHYLTERTFNIGGKPLRQVSCVERWRYLGVDFEASGCVTLEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVARAAAKSDKIRKKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCAQITGRDFVQFVHTHINALPSRIRGSRGRRGGGESSLTCRAGCKVRETTAHILQQCHRTHGGRILRHNKIVSFVAKAMEENKWTVELEPRLRTSVGLRKPDIIASRDGVGVIVDVQVVSGQRSLDELHREKRNKYGNHGELVELVAGRLGLPKAECVRATSCTISWRGVWSLTSYKELRSIIGLREPTLQIVPILALRGSHMNWTRFNQMTSVMGGGVG
>R2_DAn_pol#LINE/R2 125-3292  [Drosophila ananassae]
FERRKDPWGYRPPGTLKQIGATENNEPRNLNRFVRGESTASSLESTQFGTSAEVNLAGRVPCTICEMTFSSKRGLGVHMSHRHKDDLDAQRLRVDKKARWSEEETLMMARKEVELAASGVRFLNKKLAEIFTHRSADAISSYRKRSEYKAKLEQIRGQSVPTPEAEEINTTQRRPSNSEQNRRVPRSEGGPIAPTEQTNNEILRVLQGLAPVVCLPRWRAEVLQNIVDNAQVSGQETTLQSLSSYLMEIFPPRNEPHILTRPRTEPRNMRQRRRQQYARVQRNWDKHPGRCIKSLLEEDDESVMPNQEVMEPYWRRVMTQPSSSSIKRDMFNMEHSLERVWSAVNQRDLRATKVKLSSSPGPDGITPKTARSVPEGIMLRIMNLILWCGNLPYSIRLARTIFIPKKATANQPQDYRPISVPSVIVRQLNAILASRLSAAINWDTRQRGFLPTDGCADNTTIVDLVLREHHKRFKSCYIGTLDVSKAFDAVAHEAVYNTLASYGAPKGFINYLRKAYEGGGTMLAGNGWVSEAFIPARGVKQGDPLSPILFNLVIDRLLRSLPSEIGAKVGNAMTNAAAFADDIVLFAETPMGLQKLLDTTVCFLSSVGLTLNTDKCFTVSIKGQAKQKCTVVERRSFLIGGRECPSLKRTDEWKYLGIKFTAEGRARYDPAEDLGPKLLRLTRAPLKPQQKLFALRTVLIPQLYHKLTLGSVTIGVLKKFDKLVRYTARKWLGLPVDVPVSFFHAPHKSGGLGLPSLRWTAPMLRLKRLSNIKWPHLERSEVASSFVEEEMRRARDRLQAGSEELLTRSQVDSYLANRLHMSVDGCGLREAERFAPQHGWVSQPTRLLTGKEYTDGIKLRINALPSRSRTTRGRHELERRCRAGCDAPETTNHILQQCYRTHGRRIARHNGVVNFLKRGLERRGCVVHVEPSLQGETGLNKPDLVAIRQNRIYVIDTQIVTDGHSLDQAHQRKVGKYDTPDIRTNLRRSFGAFDIEFHSATVNWRGIWSGQSVKRLIASDLLSSGDSNIISVRVISGGLWSWRQFMYLSGYTRDWT
>R2_DM_pol#LINE/R2 286-3354 R2_DSe_pol, R2_DSi_pol and R2_DYa_pol are near-identical. [Drosophila fruit fly genus]
MTTRPSVDIFPEDQYEPNAAATLSRVPCTVCGRSFNSKRGLGVHMRSRHPDELDEERRRVDIKARWSDEEKWMMARKEVELTANGCKHINKQLAVYFANRSVEAIKKLRQRGDYKEKIEQIRGQSALAPEVANLTIRRRPSRSEQDHQVTTSETTPITPFEQSNREILRTLRGYSPVECHSKWRAQELQTIIDRAHLEGKETTLQCLSLYLLGIFPAQGVRHTLTRPPRRPRNRRESRRQQYAVVQRNWDKHKGRCIKSLLNGTDESVMPSQEIMVPYWREVMTQPSPSSCSGEVIQMDHSLERVWSAITEQDLRASRVSLSSSPGPDGITPKSAREVPSGIMLRIMNLILWCGNLPHSIRLARTVFIPKTVTAKRPQDFRPISVPSVLVRQLNAILATRLNSSINWDPRQRGFLPTDGCADNATIVDLVLRHSHKHFRSCYIANLDVSKAFDSLSHASIYDTLRAYGAPKGFVDYVQNTYEGGGTSLNGDGWSSEEFVPARGVKQGDPLSPILFNLVMDRLLRTLPSEIGAKVGNAITNAAAFADDLVLFAETRMGLQVLLDKTLDFLSIVGLKLNADKCFTVGIKGQPKQKCTVLEAQSFYVGSSEIPSLKRTDEWKYLGINFTATGRVRCNPAEDIGPKLQRLTKAPLKPQQRLFALRTVLIPQLYHKLALGSVAIGVLRKTDKLIRYYVRRWLNLPLDVPIAFVHAPPKSGGLGIPSLRWVAPMLRLRRLSNIKWPHLTQNEVASSFLEAEKQRARDRLLAEQNELLSRPAIEKYWANKLYLSVDGSGLREGGHYGPQHGWVSQPTRLLTGKEYMDGIRLRINALPTKSRTTRGRHELERQCRAGCDAPETTNHIMQKCYRSHGRRVARHNCVVNRIKRGLEERGCVVIVEPSLQCESGLNKPDLVALRQNHIDVIDTQIVTDGHSMDDAHQRKINRYDRPDIRTELRRRFEAAGDIEFHSATLNWRGIWSGQSVKRLIAKGLLSKYDSHIISVQVMRGSLGCFKQFMYLSGFSRDWT
>R2_DPe_pol#LINE/R2 214-3330 R2_DPs_polnear-identical, R2_DA_pol 83% identical and fragmentary. [Drosophila persimilis]
MQNTTPRIINTNSLTNQIPTVSSLGAQSEHSAQVNPNSGYQCTICESSFRSKSGLGVHMSRRHKDEFDQLRLRTDRKAQWSEEELSMMARKEIELAANGERYLNKKLAEVFTNRSVDAIKKCRQRERYKTKIEQLKGQAVPLPEALESETIQRRPSIRERDLLVTPPNTLGTTPTELSNSEILAVLQGYPPVVCNDQWRVEVLQSIVDGAQASGKEITLQRLSTYLMEVFPSQNDRPIQTRPPRRPRNRRQGRRQQYALTQRNWDKHKGRCIKAILDGTEGTATMPSQGIMGSYWRQVMTQTSPTYSGTNTTFRTEHPLEGVWSPITLGDLRVHRVSLTKSPGPDGITPRTVRSIPSGVMLRIMNLILWCGKLPVSIRQARTIFIPKVGNASRPQDFRPITVQSVMVRILNAILASRLTSSVDWDPRQRGFLPTDGCADNTTIVDLILRDHHKRCKSLYIATLDISKAFDSVSHAAVSATLTAYGAPKEFVDYVQNSYEVCGTTLNGDGWRSEEFIPARGVRQGDPLSPIIFNLIIDQLLRSYPNEIGATIGDHTTNAAAFADDIVLFAETRLGLQTMLDTTVDFLSSVGLTLNSDKCFTVGIKGQPKQKCTVVIPETFRIGSRSCPALKRTDEWKYLGITFTAQGRTRYSPADDLGPKLLRLTRSPLKPQQKLFALRTVLIPQLYHKLTLGSVMIGVLRKCDILVRSTVRKWLGLPLDVSTAFFHAPHTYGGLGIPSVRWVAPMLRMKRLSNIKWAHLAQSEAASSFLTDELNKARGRTLAGLNELTSRTEIETYWANRLYMSVDGRGLREAGLFRPQHGWVCQPTRLLTGQDYRNSIKLRINALPSRSRTTRGRNELERQCRAGCDAPETTNHILQNCYRTHGRRVARHNCVVNNLKRILEEKGHTVHVEPSLQLETSVSKPDLVCIRDNHACVIDAQIITDGLFLDDVHHRKVEKYKRPEVISALRREFGVSGNVEVLSATLNWRGIWSNQSVRRLIAKGLISSGDSNVISARVVTGGLYCFRQFMYLAGYTRDWT
>R2_FA_pol#LINE/R2 304-3324 [Forficula auricularia]
MQRCTTSDLTFSQCRFPHCKFRRPSLTGVRVHEQRSHKAFFDRLQAEVIRNQTSKKKPRWTEEEKNLLALAQANLIIEEETNIIDDLVSKFTYRTKDALKSQIRKPEHKTRVSEFTLAIQAHIDNIMLPAPVPIATDPLQVSCNFKDRAKDYIDTLEPITSTKFYLDELEALCDNICIWPTRLLITTVESYIRKLFKTTSTLKPAQKLHNPSNRNLPKRQLRRMEYGKTQKLWKKNPCRAIKTIIDDKDCKSPPEREAMTQYWKTTFSSKKRTCPQYEPRESTKTQLWEPVTIEELHCCHLEMTTSPGPDGITVRQLYLVPEQLLVRILNLLMACGKMPDSFLESKTTLIPKKPNSTEPGDFRPITVQSVLVRQLNKILAARVAQHIPLDERQRGFRPVDGVAHNIFELDMILRCHRSEFRDLRLASLDIAKAFDSITHNTIEDTMEVRGFPKPMINYIMACYRRSKTRFTFNGWISDTVKPTCGVKQGDPLSPILFNLVMDRMIRKLPKEVGVNVGSKHYNGLTFADDLLLFATTPEGLQSSIDIVHLFLLECGLLINKQKSFVLTVKAYPKLKKTAVIVTEKYMLDRHILPAIDREKLFHYLGVPFTAEGRCRDDTIAHLKRKIDVLTKAPLKPQQRLFALRVVILPSCYHILTLGGSNLSLLKKIDLMVRAAGRKWCCLPKDTPNAYFHASSRDGGLGLPSMRWLIPLHRYLRLLRYEGRNPEDTNVYLTTEINRAKIRLSDNGSNIDCQAKLWQFWADRLYKSVDGSALIESSKVPQQHRWATGGSRFLTGRDFINSIKLRINTLPTLSRTLRGREGNRMCRGGCYNVETLHHVLQVCHRTNGTRVKRHNAIRQYIARGAAVKFDTVEREPRIKSASGAVNIPDLVACNSDEVVVIDTQIVWDQANLDEAHQAKAEKYAHLSDILKHKYSRDRVKFTSVTLSFRGLWSKQSLKELTDLGIVNSKDIQIISTRAIIGGIASFRMFNSTTSVNSVNSFLEIALG
>R2_HC_pol#LINE/R2 1-1482 (fragment) [Hippodamia convergens]
AFADDVILCGTTSWGLQRNLEIFEEELRRSGLSLNPGKSKCVSLVASGREKKVKLVMTPTFRASGSWLSQVDGTTFWKYLGLQFRGCGMAGCGSDDVAECLERLTRAPLKPQQRMHLLRVFLLPRFYHVWTFGRLNAGILRRLDIRVRNAIRTSVRLPHDVPVGYFHAPTNAGGLGIPQLSRFIPLLRLKRFERLAHSSVESVRECARTEPAVAKVRWCRERLADVVDRVADGTQSLREFWTRELYRSMDGRALRESVRETPSTQWLRCCTRVIPARDWLNYISVHINALPSRVRTSRGRRDGVDVTCRGGCLTAETPAHCIQVCHRTHGGRVLRHDAIAKALSVHLTQRGWSVRREVSYQTVVGVRRPDIVLLAGREIAVVDVQVVAPNPSLDSAHRKKVAKYRDEAQLATCLVRGASVQPRRRAEEETQVRFASATISWRGVWSSESARSLRELGLTDRELAQYSTYDLRGSWMNWVRFGASTSTRMAWRP
>R2_LP_pol#LINE/R2 856-4347 gi|3559772|gb|AAC34904.1| reverse transcriptase [Limulus polyphemus]
MFGYARASGSTSVSIQSSSMTEGETNERATPRASDSSSVSIQSSCVTEGECLPPTDNCNPSVENQLPCVTEGRFERVGSLVTVRLPFRKVACDLCSKEFLTYSKFAVHQANFHNSETQACCTYCGKSDGNHHSIACHVPKCPWRRTVTFAANLSNFLCDLCNDSFKTKSGLSQHKRHKHPCSRNAERILSLGVRTPSARPRQVVWSEEETRTLREVEVVYSGQKNINVLCAGHLPGKTSKQVSDKRRDLHRIRSSNVHGTPTTQSRGDPVEQVEEYEELDWEGMHPFPDPDSKFCSYLDQLRDQKGLTEPVWQEIEIVAQEWVENLAHVQSSWNHERTTKQVPENNTPARRPFKRRLHRVERYKRFQRMYDLQRKRLAEEILDGREAVTCNLKKEEIKDHYDQVYGVSNDRVSLDDCPRPPGANNTDLLKPFTPTEVMDSLQGMKNGAPGPDKITLPFLQKRLKNGIHVSLANVFNLWQFSGRIPECMKSNRSVLIPKGKSNLRDVRNWRPITISSIVLRLYTRILARRLERAVQINPRQRGFVPQAGCRDNIFLLQSAMRRAKRKGTLALGLLDLSKAFDTVGHKHLLTSLERFAVHPHFVRIVEDMYSGCSTSFRVGSQSTRPIVLMRGVKQGDPMSPILFNIALDPLLRQLEEESRGFMFREGQAPVSSLAYADDMALLAKDHASLQSMLGTVDKFCSGNGLGLNIAKSAGLLIRGANKTFTVNDCPSWLVNGETLPMIGPEQTYRYLGASICPWTGINSGPVKPTLEKWIANITESPLKPHQRVDILCKYALPRLFYQLELGTLNFKELKELDSMVKQAVKRWCHLPACTADGLLYSRHRDGGLAVVKLESLVPCLKIKTNLRLVHSTDPVISSLAESDGLVGAIEGIAQKAGLPIPTPDQRSGTYHSNWRDMERRSWERLALHGQGVELFKGSRSANHWLPRPVGMKPHHWVKCLAMRANVYPTKRGLSRGNLSKNKDSAKCRGCTSMRETLCHLSGQCPKLKSMRIRRHNKICEHLIAEASFKGWKVLQEPTLVTDNGERRRPDLIFHRDDKAVVVDVTVRYEISKDTLREAYASKVRRYGCLTEQIKDLTGATSVVFHGFPMGARGAWFPESSDVMADLNIRSKYFEEFLCRRTILYTLDLLWKSNNEQYLERLAP
>R2_PS_pol#LINE/R2 686-3130 [Porcellio scaber]
GGIVRAPGISGEDLARLLHQCGFSAGEIGPNLPRGRARNAPTPEWELNNRVKRKRQKFALTQTLYYEDKSKALDFIMDGRNPFEAGEPSRAVRDEWREYFETRVDLGRVADGACLRVGQPVDRFPAVGDDITLAELENALRSTPSKTAKGVDGVGLEELKRVPRRTLFNILNGLWTHVPESLYKGRITLIPKKSLPELAGDFRPICVLPVVVRLLHRILAKRLAIVQHTEFQAGFQSGRSTSENIFLLRTILESLPAGKESMYIALLDFRKAFDSVNHTVLCGLLRDLGLPERLTGYVESIYRSVHLTLGDDWFVQGRGVLQGDPISPFLFNLMIDYILSGTQAGVGVGVGERLVSSLAYADDLALLASSRRGLNANLESVLARARSVNLALGINKCATIGKRWLGREKKMILDREPFLLEGVAIPVYRWNNIYKYLGIETSPGAAARWSVTGLRNRLSKLESACLKPQQRMHLLRCYLLPGLYYGLIHQGISVGLLRSADKQVRAAARKILHLPGDVPVPLFNEKSALGGLGLVELEVKVPELLDKIRTGLLGRGGLWRVVADRIKIPISNRERRLLVTEFCDGRGFCQARKRPGCCAWVSNGKLLMKGADYVEAVKIRLGVVSTKERAARGRNVPLHQVTCDLGCPRVESLGHILQECPSISNLRISRHNALASRIRRALAGKGWSTVEEPTIPTIPGNRRPDLVAWRGERAMVFDTAIARAHAAVLNEVFDRKVVKYNTPEIHQWVIGRSRARVVEVSALVLNWRGDMVEKSYVMLRALGLTSAIKFMEVACMEGSVRSLRFFKQASGRWG
>R2_SC_pol#LINE/R2 gi|422414|pir||G44490 retrovirus-related reverse transcriptase homolog - fungus gnat retrotransposon (fragment) [Sciara coprophila]
TLWDPVSLIEIKSARASNEKGAGPDGVTPRSWNALDDRYKRLLYNIFVFYGRVPSPIKGSRTVFTPKIEGGPDPGVFRPLSICSVILREFNKILARRFVSCYTYDERQTAYLPIDGVCINVSMLTAIIAEAKRLRKELHIAILDLVKAFNSVYHSALIDAITEAGCPPGVVDYIADMYNNVITEMQFEGKCELASILAGVYQGDPLSGPLFTLAYEKALRALNNEGRFDIADVRVNASAYSDDGLLLAMTVIGLQHNLDKFGETLAKIGLRINSRKSKTVSLVPSGREKKMKIVSNRRLLLKASELKPLTISDLWKYLGVVYTTSGPEVAKVSMDDDLSKLTKGPLKPQQRIHLLKTFVIPKHLNRLVLSRTTATGLCKMDLLIRKYVRRWLRLPGDVPVAFLYAPVKAGGKGIPCLKQWIPLMRFLRLNKAKRTGGDRIAAVLNCQLYASISHSCKTGPVSVGLWRSTNTGGLSAYWRRILIGWVDGKDLKSAQNHSSATSFNSIRMNDISGEDYIHYNQLRTNSIPTRKRTARGRPNKPTACRAGCDKLKRLQHDIQGCIRSQGGLVQRHDRVVDLLFDECETKGYAAEKVVHLRTSEELWKPDLVLKKNGRVVVVDAQVVQCGRLESDHRVKVSKYRDDPELADVIREKYAVQEVTFEACTLSYKGIWSKNSVEGLQKLGISNYCLFKIVTSVLRGSWLNWVRFNNVTTVVHW
>R8Hm-A_pol#LINE/R2 338-3817 [Hydra magnipapillata]
MNLLIVTSSIKESDVPSSGKGGVAVNNITAGASGKDTCVIIHPGTDGIWCCTECVEIHNSGKDLKRHLAKRHPSVTISGYKCNLCPFVSERQLSVGTHLRYCRGVKEVVKREFACASCSFSSDTFSGLQVHMQRKHIAEWNDQLKEKTEFAWTDRELRELAEKELTTPSFRYNKIFYAALGTSRTYDAVRKIRYNDRYKSAIAEMRSQIADAAAAAQERDVERGLVSAHSDRGKEMLPVVETKSDIQVNNDIKKDIELTPNSRQKQTNLALARPAVIEVEEDLGRQDVKQYLASLRQDDYTSPAERSIFAYCREETNWSATKRQVLKISRTTRGLRQPKKVRPFEFPEGFKPNRNMRKWRKYRFLQECYREKRAETVSKILDGTFIDEPEEEIRPELEEVQRMYIDRLEKRTQLDTTKIVQTDEVFCLQSYGRITIGEVRDALGASKKDSASGPDGLLLQDVRRLGPLLLCNIFNMWYLHGIPVEENRCRTILLYKSGDRHLASNYRPVTIGNMLNRLYAKIWDKRIRKNVRLHVRQKAFIPVDGCFENVKTIQCVLQSYRKRKLEHNVVFIDLAKAFDTVLHDSIRKALWRKGVPSGVVKVVDSLYAGAVTSISVGKTKTRSICINSGVKQGCPLSPLLFNLILDELAERIEATGCGLDLDGHVLSSMAFADDYVLLAKDSVEMNELIRVCSTFFKEKGLSVNPGKCQSLRVLPVKEKKRSMKVLVRPHRWWRIKDQDVDIPSMTYDSLGKYLGVSIDPTGKIALPIEEWKNWMTKLKECKLKPEQKVKILKEVVCSRVNYVLRMSECGISELRSWTRFVRNWAKNIIHLPTWCSSDWIHSIKGLGIPDVSKGIVIQRMRASEKMSTSEDGIVRVVGARLVQKNRVLWEKAGFEGIELKAARRHCEVERLNNIGNITNGVALKTIAAVSSVNRYWMIEDNLKSGNKILVWKAMAGAIPTKINLSRGVADQTLKKCRRCGLTAETDGHILAGCHTSSDAYSKRHNMLCDKLAKELKLNGGPNRRVWRERTCFTSTGRRYRPDIIVKDDSKITVIDMTCPYEKSEGHLIQCESAKVTKYEPLKLDKYWTRELEGANGIVAEKVELMGLAIGAIGTIMRSTLRKLCELKSGRIVRRLQMIACNNSAQIIKGHLSRATRRNLR
>R8Hm-B_pol#LINE/R2 266-3739 [Hydra magnipapillata]
MSNRITIGDVPSVGKGGLTVNKQTAGADGAEACVVIHPGAKGIWSSPACLRKFTIGKELRAHLAQIHKLAPSAVRYRCNKCPYEGDVQLSVGTHLRYCKGIAGVVEEKKQFACAICNFSSDTFSGLQVHKQRKHVVEWNEQLKEKTEFAWTDRELRELAVKEVTIPFSVVNTETFAVLDITTRTKDAVRKIRYTDRYKSILAEVRAQVNAVAEEAPQASDESQITLLVNTGRGAELQPAVINITDSIELVTDVNEVEMVTSNSTNEEQPINAPVEPAVIEADLGRQDAKLYLASLRQSDCTNASDRWTLAYCRGEVDWCKTKSRLFKVSRHARGLRQPQRVENWEFPEGFRPNRNLRKWRKYSFLQSCYRTKKKETVSKILDGTFKDTPEEEIRPELEEVQRVYVDRLEVRTQLDTTRTVHIDERFDLVSYGRITIREVQDAISASKKDASGGPDGLLLQDVKKASPRQLCIIFNMWYLHGIPVVENRCRTILLHKGGEKHLTSNYRPVTIGNMLNRVYAKIWDRRIRKNLQLHVRQKAFVPLDGCFENVKTIQCILQSYRRSRREHNVVFVDLAKAFDTILHDSIEKALLRKGIPRSVIKVVDSLYAGAVTSITVGKTKTRPICINSGVKQGCPLSPLLFNLVIDELAERLEATGCGLDLEGHVISSMAFADDYVLLAKDSVEMNVLMNVCNTFFEEKGLAVNPAKCQSLRVLPVKGKRSMKVLTRTHRWWKINNQDVEIPSMTYESVGKYLGVMIDPAGKIALPIEEWKLWLTRLRECKLKPDQKVKVLKEVVCARANYVLRMSGCGICELRKWSRFVRGWVKSIIHFPAWCNSEWMHSSKGLGIPDVVSGIVIQRMRAAEKMAKSTDGVVRVVGARIVQTNRVLWKRAGLAGIELDAARKFCEVKRVNKIGNQTNGGALKTIAESSVSRHWLLEKNIRPGNKILVWKAMAGVIPTKINLSRGVADQTLKKCRCCGLTAETDCHILAGCPTSRDAYSKRHNLLCDKLAKELRLNGGPSRRVWRERMCLSGNGRRYKPDIVVKDDGVITVIDMACPYEKSERHLSQCEDAKVAKYEPLRLDRSWTQELEGNNGRSANEISVVGIAVGAIGTITRKTQRILSKLKLAKVGRPLQIIACNESAQIIRRHLSGSRLRNLR
>R9Av_pol#LINE/R2 570-3875 [Adineta vaga]
MNLPIREHAVSVHNINKFNYLCQLCSKSYDTINSVKAHYVACRRQKNASSTTAVPTNVINNNQLAINTNQVISRNPLQCVECLMKQVDFYAKDTKALVTHMRTKHAAAYEESKKVATRRVAWSPDEDQILAELEVKLKKIQKGQLLSRLVVEYNKCADKSKAPSRSKDAIRTRRQQHDYKLLLRSLQSQQPPVGSEDSDSDISSSNNNPLTTTHNVTPTPDSSNVVLLIQKIRESVDSIVKITNLKLNTNMLNAASAFINQNNNMDPLELSMRGIEEDVKAIRDKELQKPTRNVPSSTTSRKPTRNAKRLEKSKKYGYYQHLYYNNKKKLVAEILDGETSGAKPPPMNLVEDYYRNIWSRSTIDDSPVNNIKTVNSDSIFAPISRDEIKLALSNTKKDSAAGPDAVTIKEAKAIIDNLYVAYNIWLGVQGIPEQLKLNKTILIPKGNSDLSLLKNWRPITISSIILRVYNRLLAYRMNKIFKTNDKQVGFKPVNGCGINISWLHSLLKHARLNKNSIYACLVDVSKAFDSVSHQSIVRALTMNGAPSLLVKLIMDQYTNVNTVITCSGSISNKINISSGVKQGDPLSSLLFNLVIDELFDVIKDQYGYTIDNIGTTNARCFADDLTLISSSRMGMNKLLELTTKFFKERGLNVNPSKCMSIGMSKGYKGKKSKIESEPLFSITDAQIPMLGYIDKTTRYLGVNFTSIGAIDAKRIKKDLQDTLDKLEHLKLKAQCKMDLLRTYMIPRFMFQLIHTELYPKLLIKMDILIRKLAKRILHLPISTSSEFFYLPFKEGGLQLTSLKEAVGLAKIKLHKKIMSSNDPMLCYLIESQRSRIVEHFMKDLKLGDSLTLNEMNNIKECFMKEKRISFAQKIHGVGFEVFSSSPLTNQWINGEIKTMTTKTYINSIKLRTNTLETRVTTSRGLNIIKTCRRCHVADESLMHVLQCCSSTKGLRYSRHHKICAKVANKLVMNGYGVFREKSYPDPNNSGSYLRPDIIAVKNGHVIVLDVTVVYEVTGATFINAYQTKINKYNAIMVQIEQMFNCVNGELHGLVIGSRGSIHHSQLHIWHQMGFSSIELKYVAIGCMEDSLRIMSTFSKAIT
>RandI-1#LINE/R2 5-10717 [Chlamydomonas]
MHTNTPLTNLASSSLGNMWKMVARRKVERKSAGICVLICFALCMLTTNATTAGNASGSAAADRWFDRGPPRHSSAFALLGNHDRTMPIQKWSARGLTTCTESSAKGGCSHVCNSRATGAQLPALSHTDGPIATHGINHAHGSVWRENFSFAHSMFTVHSNPANATLLSDRCSQKGIFDTSILHTTCYTASKRAGAEPFGMSPKRPSQSPTAAKHPSFEELISSKHIPVASEPLANDVPERGRAEPPVFTANSQLYENASLLTEPPPTSSERRQYRSPSGLLSRAKVKPKPGCTNIRNVMITALQPVGEGLLSTNLKIAQACRSGVTKLCTAEGAYRSYATKTIGLLGESLLTSVLALGDLGSRHGGTMLRSGASALHSMAETAYGPQPTLNCSAPWENSPLLRLHLTLVVHFHWAGAGHVRAAMHSHTIAIRVGAHLATRSRLAIYQTAAQTGKALHTILDKAIVSLTIITATGAMYMLWTHLLHAETRTASVNSEICANGAILSLLLWGPTLTTLALSPLCVIALALGITAIPAALGLLFALTVTSILAVLCLPALLKHVVQVTRQIASATWARRKLLLWGTAMAIILRNLYLTLPDPCSVQPAQPALWGPALVTGLLTASQATTLLTLTYAVNRTHTMPYVKPTLRGALPTDPTAPPAPADPRTHAAVNIRPPAALHWPPNPNTTYRETQRQHFCSVHALNNSLGLAWLDPLDVLSYAKRVHAHLTATQDPNALFWKECYCPNSGAFSEFLLNHYLYHNATISNIFAYPNRKLIMRRTHFPRLNGDISKEKVLESLPVAARTRGFTVHQYTVRHTIAVRYEAGQWRVIDSVNSPIHNTVLHDNTWNTLDGEVWCLDAVRASDTATLQDALGQLREIVPPPRPPPHMEATRPVQTGPAATGRPAPEPAQHAQDNSPLRAAHRAPQHAAPHTTAPAQPHNANAGIAPRLNTTGTRQTILNWLVRPTARNHAHMEPNQAHTNTRPPSSNTTLHIVTHNVRGLLSEILSTGQPGNLSFTLCNLAQWKADIVVLTETKLTGKTDSIKRAFRNEGYRLYCSTTPRVATARGSAGVAVAISARYSDLGCVTHHTPPPTLHGYVSHVQIKTPGSTPLTVLGIYAPEDMQTRKAIYTYCQQVVGRADACGHHLVTAGDFNAVARAHERDSPIDTADRAHQRFLADSGLRPIRGDTTTTAEWSYEQTRPGMAPYHSRIDDILLCPATRAACTEAREYTSTVAGNFDHKPVHAELLAADLQLWPAPQAGARNPAPQQQTQQRWAEVALPVTQKQLAAAAIRLEEALVEATADLHSATRQATQSIEHALTRHSMDPTGYPASVMHRDLAQDTSIQKADINQLAEQLASALDTGLTCLLEECTRKAPFTGKHHASRSTARVLKPLWDKEVALKTQLTNLTQGPQALPEVDAANAAAKLRNEIKACQAEHRQLVADRAKAQREAAATALQHTLATRPAQGHKRIFQKEDMERGLPAVRNPETGEVTTDSTSILAILETHFRKLSAPPRGTRTGDFRLPSNATRGYPFEKADATDQFTLDRNRHPDTHSMLPSMADTANFEQCISHLSRNKATGPDGIPNELLRILPSGMKRNLHCILQIMYVKSQIPETWAASETVLLPKPGDALDIKNKRPIALANTCYKLYTSMLTLGIGELAGPLQLFSEAQEGFRAYCNTERQVLNLVHALEDAALFGKDVYAVYVDYSSAFNTIDQDRLLQIMFDLGLPTDLIRAVRNLYAHATTRIRTEHGSTSAIPIERGTVQGDTLSPVLFILFMEPLVRWLHAGGRGYHYGCLTPSENLQYHCSAAAYADDLAALTNSLDDLQVQCDKIASYAEWASLRVNHTKCATTAIWHDKSRSDPNLDGPTGKATLAAMRRNMTNTIKIGTTPVPYFPPTQPYKYLGVQLTFSLDWSAHVARVTEIVKDKGTAIATSLATPAQRLRMIQQCVHTTVAYGFAAMPFTKQDITTLDTTLAGFAKRCYGLPRSFPTRTSLLPANEYGLGLGSLLPQYARVAQRALVLALNDSGRLGIVTRALLPRQASIAGPTQAHLLPAHRSHHLTTLKQMTLAKEYGVTLYQNGSAFTAPTWSIAAALEAEAEARGVEPLPIEYVLPLADLRLELSHLVDRNTGKHLITSSDLEKHMGASRVRHKHKVALNRLSLALSMAARAGENAPAHGSPAPLTTAQRALPDVAAIVALAMRADPLPLGMANPLDRYLQPLPEAPPAQANTTQAPADLAPPSPAGAAQAHPGAQGAAAPEVPADGATQPSLRPPARARKPATTRRPPQNQTRARRVTKHAAQRARIAETTRTTPEDLLTGDRAAINHALRLTNGDESLPVGTRGYETACSVFQALAKDMTGHMRICHPHPQDPPSLAHAVEPRQQRRGLPPALTSRLTANAANPEPNAISEYLNNTGLPMEVNQAAAHNDPMDADSPTPPLTAPAAQAAGGHGARPSWRLARARITHDLVPRPADNRTNGDTQLTYDLDNDGQELAQVLHSENKQTVTDKELTRKRKAREDTSGTREKYWKVQWKPSICPAGIVSAFVRMGYATIQNARCYKHPLATRPGPQPAQTEAEPPAETQAHAISPEEPAQAAEPAAPQPTGAPLFSSWTTKLLRHVTWAPSTDRERDLKHSPQWEELLEECKTRLANGTNQGPRPRTVRPAPDRNLTARQRQGRHDAEPLDTASRARDIRTTTTITTSPCNPYKDIVAPGAYTITTTGGTRRDPAEAHVHEPSGRWLGTITYPRLLTLWERFRHTGNQRPNAFEEAVAALIMRYRYDPAQQDRKAMPMHQVSLPAGTVAAIVQCLRVTQAVHIREMFASPLNSSTAAHEYWTRDPADGAFGALHDAYQTAWTGLQYAHPPSTPHDARKALMWALACAEAMRDSQEPTLTVLALPKAATFPHTQWLQHPLCHELANWSAGTAGLDTGLGTNTQAERQKGLRLVIVGNPAGLQCFAPRLKRLVDTLKRGANAPTHISDPRTWTHTATAPTCPALPNSLLKQAKYQHANPKTIHAMADEARRFPNARFQTHHALAHDVNGTVWTDGSVSKIKTDNGKEVQVAGACAWFSDSRVVYVNPNGAGCTNTITRAELAAIRAALAEFGGEGKEFATKKLTIASDSVASLYLIKRAINEPRRLHLSKHRDLLDSVVALLHARHARGAPTALIKVISHTGLHGNEEADKGAAAVATQEKPADVSEPADNDPHARHWWPTFTVTRDDDSTATHYVSDLNRGLTRAMAPSCRGGYANKTLYTEKWAEAAPSLDPRASNAYMTNSDASHGLRRFIQNARQGGLICPARLALFKLRDSDKCGLCAHTQRSRGSDPERGTAGHLAGHCAHPQLVGARIAKHNTAVRTIAECLHHGHNGGGYMIMDATSRAELPEYCAGMRPPSWLCPQVPAADLNRMRPDILFIPNLPRSEAERFMTSPPANKGAYPVYILEVGYTSDLHHSEKLIQKQAQHATLATAMRAAGWTVHYDTKHVITLGHGGTVPRTLETLLKDLGAKPQAAKACCTRLHMHSVTTLRGTANLYYRLEREMGIANTRCRPGGRTQGTANGGPRAGEPG
>RandI-1_VC#LINE/R2 87-11396 [Volvox carteri]
MQSFVLLVLTVFLLGADGRSMTEEGAMDELKGSVRTGLLYAPLLDPRPKSMGNIAQPRSVSLVKTTAPQELRDRSTRTNMLGEQDTGILICQNNQARRICSNMNPLKQWQWLGSSSSHISGIFLSKMVGNPRAGSYTTTGKHYLPPGDSGILTARGPEPSPTPRAPHSDLCKANRPWNAPPAHYNTRIKDAWVLKYFIEKTAVPLDCHTGDPPWQPLNAADRKRNQFPAPYQHYHIDPIHSREIGPQDLRPLTAKNTKSPPPSCRLITKHGTKFCSISNAQIITHQNETHRKNHTNRTRTDKARATQRRCHPKCKASQYTCTNQHQYTAYKNMAVVPGHFQGRPILGSHQGVTISTTRQLSDQHITLLHRNCHVRPNLHAGPRRTDALVKEMHCSIAWQSDVCDSIKGWIGGEHKPVSCEGPLQPAETQYGCNSEPVVTHNQTLAHHSTRETDGRRTLRDNWKAGCTDNAYPSTGSEKEVWGNRAGETSYQQGHSRIISRSTQKLLATSIGDDISTHSPGGIAASTARVIYGRLYRSACTAWTGTRYVLAVIALIVCMAVASMGVLCTVRKIYRTTTRRGMNTWKIIPQTSNAVLLMIILWGPLALVIAIWPLDTAISLVVQTTGLIWVIRHFTKRITTCAVPAAIDLALACVVHTADTSYWAYQHPGVIRQMIVSVAALVMLCLHLATAAPMAPILAISIPTIDKGLNLIPELRGHARWLINICLIVGLAIPQNMLVGAAMTLVVTPITITRWNGDSAPEIMRRSEQADSTHCAGPPEETTQTELPCPHASTPTWLLTGPGTPPKQVTWPITTNPHNSDGSLYHEQQQKELCMIHAINNLLGGPYINPQHVLQYCRAMLQHMADRGLHNAAATWRLTHNQNTGNFSTLAINPYLRYNVPVRTAQQRNDPAHPHVASIGSGQEIKPNATLSSVLHQLPEHARNWGFIVHLTGHAIAVRKHKDRWYIHDSLQPKPVELGDENATWPRETGAIYTLNLRHHTEPTATHVDLRDITPPDTWMCTAHTENTEIQTTPNGTTRTTTRVPQGQKRRKIKHLRAVQLTHQTMRTLTEPPGTWIPPQPTAHDNDHRPATNPIVAPLPPPLEEDSRERPHQKRHTGHTGITLPRPRDTTTGAPRTTGTRIRAKPPRTLPTDAQCNRPKPPTIMDHLRRWANKRTNPAEADHPGKTIHTTRENGNASEPNVKRPRLSTTPVNNNTSPHPENANPSEHCNKTDPRYLHIVTHNVRGLATNFLSTLCNMQTWAADIIVLTETKTGNRTRWMKDAVRKEPQGYRLYCSSKPRSSGKDRYSAGVAIAIGARYTRAGQVTHISPPPLLQGYLCHCKISTSASTPLHVLGIYCPENTLVRTTIYAHCRTVLRQAKSNGEHVALAGDFNAVLNPDDRSTGLLDTADRLHLKFVTDNTLTPVPENCSPRHPSFKQWIQECCTHQSRIDDILMCPTLHASVKAETPANGNTPQAYCNVSVAGGNFDHNPVHARLPADAIRLWDAKKPAAPNNPDGDGARTKWKNVILPVPNSTIRAAQSKMDASLTSDILSLQEYLRPAVQEIEAGLAKHIEDPTDMTATRLMTLLRGHDSITAVNVEIAAAMLQTTLDKGLDILLDLCPQKPPCTGKIHTKRTVSRGLKKLHREHTRLKHDYEMELRMQAAPGCQQPVCADSSTSPNGLASNGNHAPPEGAGGLLEQLRDTIRRVGSQIRQALTTERRKSITAARRRTQHLIATRPRRAHQGIFSKDELERGLPAVKHPVSGKICTEPESILEAVHQYFQTQAAPIGPPKTGRYRPEETPRAYPFLQSAAPDTFSLTSPKQAADHVLLSSVADPFNFNKCVQHLARNKTPGPDGIPNELLRALPTALQSTIHDLLKVMWAQARTPKQWTESVTVLLPKAGDALLLNNKRPIALANTLYKLWTSLVTVSIGDVAPELALFSEAQEGFLRYRNTERQIQNLLHVIEDAGLTRKDLYLLYVDFSSAFNTINHDLLLQIMYDLGLPEDLIYVVRDLYSQARTTIRTEHGLTAPIMIERGTVQGDTLSPVLFIIFLEPLLRWLHAGGRGYKYGCLPDSLNARYHGSSAAYADDLAVMTNSAQDLQIQCDKISLYSKWAGLHVNHKKCAVTGILHHRAWADRGLNGPTCARTLKAALDEKIKISDQSVPYLPPTEPYKYLGVHVTLTLNWSAQMSHVCKAVRDKGDLLQGSLASPDQCIRIIQTCIQAVVSYSFSTMAYTPNDIRLLDAMIARAARRCYRLPTSFPTRAVLLPVEQYGLGVGSLLPIYVRMAARALVLSLNDEGRLGVVTRAMLELQCRLAADTRMHTLKRESSFYTTLKQLTLARDHGIAVTDKGMPYNTSLNTLMTAASAVNARQDTKSETLPYRCLLPLTELGLDMHALIDKNTTQHLITTTDLQKLFPRGKVQHRHKIALNRLSLAISAQCPQAPHTKAHDPRRWSSALPLEDRRLREIPSDPPYTGLRHKSSLPNPILAPSLDPHVRRDTPVVWSTTTEKPHHPRAEPDDMESDPPAPPSHPAEPACTGRKRTRSVHQRQQDFINNNTRCDNSNVGTDSAAIHGVQLRDPAPQCTSYMETRRVMAALRKDTRRSVPNLGNPPGPIVQGPRPRPSRQTRRTLSIGMTPVTGEIGTPNPVLVYLAEKGLDCTPVAPRNPRAGAGAGAARAGPNTADRDHAGDPPAPEPAGALPGTPKPPEHLTPQWWRPRWKVARDQILEDRIPWKPGKGQAKDTTGQQQIVYDLYNDVEDIVEVLAGPITKRIVPSNVKPPKKQKIGADTTATHEQYYTVRWKDTITPISIVGAYASMGYVPRQLLPVTGLYGTRIDRHFRRAVWEPSDIPAAQLGRLPNGPAAMARYEQTRSQSVNPLSRYPKPKDSNLTNPQRQGRWNPPPSEQTQRARLIRANTTFETAPCNPYMDTRPTGNYRIQLGLLTREGGSTEGNTAFVYDPRGKCVGTLTLQRLETLRMRYQHTIDTYPEVHRSLSSQGGFAEDVARLLLRYGKDPDGRETKGPPRSQATMSRKLRCTLIDALHALDAGPVVERFSSPLNCGEEVQYYFSVHAEDQLFGANIDAFSQPFTGLSIAHPNPDPTSVKKAVMWAVAGASHTMTSALPTATLLIVPHSRTGPHTQLHNTPYVFQLARLSRGEACKLTSGTGTDGPTPDYKGGLDLVVVANDTAIRGLNARSMKALLSELEAMDATGLPRKHLRLRDMSAGTHCVGTQRPYPNKVAQVMRKMNASKPPRPRPTATVPHSDGQMLQQRLTAAFPGQVPLRMDPHTIIWTDGSCIKSAENDGQNKLGAAAYCGPTGKTLHIDPAGEGCTNTIQRAELAAIRVALSTQRAVNITLTIATDSQASLDLIKRAVNDPSKLHISKHKALLMDIADLLYECAQQNITVHFLKVKSHTGLDGNDKADKGATSVARGENPATFTEKADNAPFDKVFWLKQRDTGLYVSDLNKGLYKRLQQGTFAGYTNDTILTEKWRNTASKLDPKSSNSFLSNAKMXHWLKLQVLKARYGLLFNAKLKKLYGRGGDGNCPICRSCGPTGPTPDSGAHILGGCPHPTMKGMYINRHNQATRTIADCVNGGHHGGGFMIMDAGKEEDLPPYCSGTRVPKWMLPHLADEEIRRLRPDIMFIPDLPAHRTKRKRYQGPECKSKHDVYIVEVGYTSDLQHSDKLEQKTAQHARLTEELTKAGWTVHYTEAQIVTLGSTGTLTNTLKPLLCRLGSSAEQAQKTCLHLHRQTIEAAGTIIRARRVLEGTVK
>RandI-2#LINE/R2 2-6196 [Chlamydomonas]
KNSAPDTFTLHSATTPPTHALLPSIADSTNFDSCIDHLSRNKSPGPDGIPNELLRALPQTLRTTLHNLLTLMWVRAHTPASWTASETVLLPKPGDPLLLKNYRPIALANTTYKLWTSLITVAISDISHDLDLFSETQEGFLRYRNTERQTLNLVHALEDAGLTKQDIYVMYADFSSAFNTISHDRLLEIMWDLGMPHDLIRVVQNLYSNARTYIRSEHGLTAPIYIERGTVQGDTLSPVLFLVFIEPLIRWLHVGGRGYSYGCLPPHLNARYNCSSAAYADDLAVLTNTLSDLRIQCDKIHRYSEWAGLQVNHAKCRVTGILHRRAMQDKGLNGPTCNRTLRSMLENKIHIGTTSIPYLPATEPFKYLGVQVTMTLNWGPQFAYLCKNITDKSLSLQTCQASPEQCLRIIKSCIQSVAAYSFAVMPYTENDIRTLDNMIARLARTCYRLSRGFPTRAVLTPAEMSGLGVGSLLPIYVQKATRALTLALNDPGRLGMVTHALLELQTRIAGTTDMHKLRHESHYYTTLKQLSIMRAYNLTLWDHGAPYKGPPNTLLTAISRSPHPISHHLVLTLTQAGLDLRNLVGKERTPEGRACLIPSDILFQHLPRNQCQHKHRVALNRLSLCLSAECDGAREAPFNQAESYKCHLPLPQRYRALPNTPAFAALLPRNATPGELTTQSTMDAHLQHMTALHPNTEAQTPQHPNGLGPRQRQTTLAHMLRTTGAPPTAPTQSPTATLTQTPTGTLPTPPLAQPMPPPLTQPTPPLTTPAGPDAPNTQTPPTVASLTTAHQQPKSKKQRPNAIKRLQQKIDADPRHDPLPPTDMRSHTEKSGFILNNDPDENDSGPPNFVMWAPHYFANVQKDMQGTNRMPRLGIPRHHSRFPQNRTRPNPTRTIPAHLADPYFLGSQVDDTNPLNPVTAYISANPPTTPPTCAYDSRPRWADTGDFMIAPEPPNWPNITGATPGDSHDPRQADHDPQGQMRAEYMQERERLRAHLDDHPPQPRPFKRWMGIRLQLLTGKLPWPTQAYHVAQAAKQLVYSLYHDIEEISHIQAGPITKAVTAPEKGASLHTERYYEVAWKDTTIVKGAAEAYTRMKYTGTAAAHMGYGQACHKYFLRMKWDPTSEPVDKCPTLQGWTPAISEHLRKLAEPPTPTPQPKPKDARLTPAQQQGRWTQADVAASHVRRTTKQNTRIDTNPCNPYLDVHPTGRYTIQIPDTYTDERTLAHVYNPTGRHIASVTLGTLLTLKARYEHALSTHHDATSPHRSQGGFPEDLAKLLLRTRVDSKGKTCKSAPARERSLPESLKLALYNCLASTHSDPDRPVGLVERFASPLNCSGRATKYYSQHAADSLFGASHDAYTAPFDGLSLAHPDPDPDACTKALAWATASIEHLEHQATPAITFMIIPQGKGAASRCLASPHVTILALIPPGVSASSMLDGLGAADEAASSKQGLQLLLIANTTGVQALNSNNNLTRLQTSLAELGAVPPPTSQPPGRRQPLEWPARVTLPRDRTAPPGRPYSHRAKARAKQLTRPQAPAARGLDTCPTPMPTLSALYTTRAAFPTRSSYLYDAATIVWTDGSCIKVAAGEDGNEMNKLGACAWSQQTEHIYVEPGGLNSTNTIQRAELSAILVALEYIRPRLCLLGMTQVTIASDSLVSLYLIRRALTAPQRLLLSKHKNLLENILHELQMYADAGVPVQLLKVRSHTGLHGNEEADKGAAKVAANDMEAMGQAIRLAPDEPWSNIWWPKRNSDNFYLSDLNRGVLNSLPPEAQQGFTNNTPVLEQWAEASANMCPTLSNRTLASSTRHPWLVKQILYARYGYLFNAQLKRRYRLGGNGNCPLCHTPDSGGHILGGCTHPKMKGAYINRHNWAVQRVAKCISKGTYGNGFMVMDAGPLADLPHYASAQRPPAWLAAERTSSPLITRLRPDILFIPNLPAHETHREGYRPPLNKARLPIYILEIGYSSDVRHLDKREEKSQQHQELKRLLEAAGWTVHYSTNECLALGVTGAIPCNLTKLLTSQLGVTHTAARVCGERLHTHAVNSAGGIIKMRRVTEQELKPRGG
>RandI-3#LINE/R2 98-11113 [Chlamydomonas]
MATMLVLITYVMLILGVLVRTSHWPEEVRPFHTPEVLQALAGLLARSWTPSLTSGGPEEVATTAMHRMPPQKYAPFCIPATLVATNPAICSAGSRLSSGSYGSQQMNVRSAAPTPTQQSQQPLPGTRKQRLCNETNTTLPVSLRPPAPDVQNLDLSRDRRRPATTSPRAANSCTSRTLKSPTLQHYVSTSLQPPASDGQNSDMSRGPATTSPMAANPFSPKTLKSPASQHYSTAERPPDDTPHDPGPGSSARGPRAPAALLCHTRTASPALQLWCQTMGPYPIVQLQMHNDTDPLIATVSYISAHITSALCWTAVGTFHGSCALLRHTIASLRTLLTHTAAYMTTCTGTLIAHSWRTAASITLWPPALTLVAASAARLAWSARTMLSHPSAGNLTTLTFTLLATLTLSQPLLLLISTHQHISTTLTLLTTTAAIYATLRKTHGAPLILLGLPVYATCRAVAVKPAYTMRTLLTILLLLTNIQATAEAPELTPAAAPLAMQLLTRIPGSPTLNTGVVGLTYLLSQTHIHPQPACLALTTNLATYRYLMDVTTPWSHTLGSPIPPPIQLRGGNPIEHTPATNRVAAATESGRKPERIQWPRQIQHTFFREQQQLNFCTVHAINNMLGKPWLLATDVLAFCQVSHTAMADTPALYTLWGHHFRYHGLFHEAAINHYLRHRPPAVDHTGARLLLRTVAKTLTPGHTQDHIISLLPDCSKGLGLMVHDGRHAYAIRKENDTWYLVDSLAHIGRKPMTQELWAATKGDLFCLHPLHPDMPPDPLTYPTIPGLPEPPPPPTPTTQPRPRKGTVQLTLNTTMTRTLNRAPLNPNPENSTTSNRAQTRPQTQTTLANLVARSQTHAEPQGTQLTPPEDPQEPPPRTHAPTHEHGRPPTPPSAARPTRRLRRNDQISPHSPTRHRTQQDATTENQQPQAPPPANDPVPTPQPRPTWAQVLTNNASAVGTATLHVLTRLSPAPRHRPDTPTSAARPTQRPRQELPGSPTTHTATAPPDPPPTNPTATPPVTEQAAEPAASWLHVVTHNVRGLSTNLLSTVCHLREWDADIVILTETKLGPRTRWLKDTLRHEKLSYRTFTSTKPGTAQYKRRSASVLMAISKRYHSGSNIHTATIPPHLLGHLAHCTIRTPHSIPLHILGVYCPEDMPTRRRIYTYCTSTLKAAAAAGEHVLIGGDFNAVLTAADRTGPLDDADRHHARFVSSHRLHRITEPNGTTSMTYYQTRDGHPQAISRIDDILICQHTSNALVAAATEPGGNTPTLKVQPSGGLFDHSSVHIHLPTFPMRLWTAPTGNRTGNTTQPPTGPWPQVVLPISTSTLEAVRTKIEHTLASPIANLAAALQPASTAIRDHLDRYTTGATNATELDTQLKGGPTVQAPNLDALAGQLHDILKDGLNILVDMCPKKPPRTGAFAPRRISKKIRRAHEELRQLRAAIADNDTLHTPGNAATGAPTTPQPSPCPPTEGEPTTPTPTRGPRPPPPNQTVSDLINKIKHVGSALRQTLKKLTQSEVQKSRARFQHKLATRAKQAHKDIFSNQEQARGIPAVLHPHTKAHCTDKASILEAIHTYFQDQGATITGPRTGNYKPEDRHPNTRYPFDPSNRTAPDTFKLHSTCSPTSHALLPSISDSANFDTCIDHLSRNKSPGPDGIPNELLRALPTPLRTALHNLLILMWVRAHTPASWTASETVLLPKPGDPLLLKNYRPIAQANTTYKLWTSLITVAISDISHDLDLFSETQEGFLRYRNTERQTLNLVHALEDAGLTNQDIYVMYADFSSAFNTISHDRLLEIMWDLGMPHDLLRVVQNLYANARTYIRTEHGLTSPVHIERGTVQGDTLSPVLFLMFIEPLIWWLHVGGRGYSYGCLPNHLNNRFHCSSAAYTDDLAVLTNTLSDLRIQCDKIHRYSAWAGLQVNHAKCRVTGILHRRAQQDKGLNGPTCNRTLKSMLENKIHIGDKPVPYLPATEPFKYLGVQITMNLHWGPQFAYLCDAIKEKSANLQTSLASPEQCLRIIKSCIQSMAAYSFAVMPYAENDIRTLDAMIARLAKKCYRLTPGFPTRATLAPADMSGLGVGSLLPLYAQKATRALTLALNDPGRLGMVTHALLELQSRIAGTAAIHKLRRESHFYTTLKQLSIMREYDITLWDHGAPYAGPINTILQAVNRNPRPIPHHLVHTLAQAGLDLRALISTERTKEGLTCLIPSDSLFLRLPRNQCKRQHRIALNRLSLCLSAEGAPTRAAPYDQPETYNCHLPLPQQYRALPATPAFAALLPQSATATGAPQTTLMAHRQHMTTLHPEPNSTQPHAPTAFNATAPPRAAQPRGVPTRQAALTRHLRPVETACTLATIPAPPTQAGTPDPNQTATPIALAQGTAPTLPPADTPATQPQTQTNTNKRKRINLQVKKVKGPSASKRLERRIEAEPRHDPLGTRGQRDHTGRHGFVLDHGEPVAGDTVPADFVMWAPRFYSMLQKDMSGKTHIPRLGIPPGKQKFPTTLPRPRYTRQIPTHLTTPYFLNDGEPHNPVQTYLRDHNATKAPLCAYDTPARWAQAGDFIIEPEPPRWPTITGADPANPDDPREADPDPNGMSRKAYMAERALLRQRTQHQDGRPRLITRWMGIRAQVMTGGLQWPKNTSDATRAASQLIFSLYYDLESVSHVHAGPIHKLIAAPARNERPQTALYYEVAWKPTTIVRGAAAAYTIMKYTGTPHAHLAYGQSCSRYFVHMHWNVTSEPASKCPTLQGWRAAHAAHLQRLSKPPSEPTPPPPRDSHLSPAQRQGRWTPPDVEGAARRRTTRQNTQINTKPCNPYHDIYPTGAYTIQITDTYTDAQTLAHIHGPDGRHISSITMGTLHTLHTRYKHALASNPTETASLRSPGGFPEDVAKLLIRTRVDEKGKPCKTAPALERSLPTCLKTTLLDALAAAHPDETNPALMERFASPLNCSNRVCQYWSAQPADALFGATTDVLSAPFTGLSIAHPGPNPAAYTKALAWAVATTELLEGQMDPAITLMVIPHNHKSPHTRLFSSPHVTHIAYLPPDTPATNLDEGLGDLSPAITLRHGLDLLLVANTTGVQAFTARNNLANLQAALTDIGAQPPRPTRTTAAVARWPRRITLPRDRHQPTSRPYSHRAQTRARQATHRTPPTPPAPPTCTVSPPIQAELNALRDCFPAISRPLYDAATVIWTDGSCIKIAVGDDGAEMNQLGACAWTATTGEPLYVEPGGLNSTNTIQRAELSAILAALRHYRPRAQLLGLTKLVIASDSLVSLYLIRRAISDPMKLTLSKHKNLLSDIVKELNECADELLPVVFLKVRSHTGLAGNDEADKGAALVAQRDAGAMSQAVHLPPDEPWANIWWPKRNSDNFYISDLNRGVLSSLPPRAQYGFTDSTTVLDNWAAAADGACPQSSNLTLASPARHPWLVKQILYARYGYLFNATLKRRYGLGGNGLCPLCEAPDSGGHILGGCSQRQMKGAYINRHNIAVQRVAKCISKGSYGGGYMVMDAGPLADLPEYASGQRPPAWLFRNGTPPEVIARLRPDILFIPALDTTTTQREDYRPPRNRSRTPIYILEIGYSSDSQHLHKREEKSQQHQELKQLLEEAGWTVHYSPAECIALGVTGTIPANLVPLLTTLGVSPKAAKTCGHKLHHHAVNSAGGIIKARRIMEYGHTRTPG
>RandI-4#LINE/R2 1-7647 [Chlamydomonas]
KLGPTPAALAQDPPTNPTGGPPAGPNTTNSPSPPTSANPGPAARSNTATRIVPKPAGPTKRPARRTPNPTPKLRKLATGTPSAPPPAKRLHQTTIATSHKRRHTATLQNTPTEPTNGQAQASPSPPPDGRISILTLNTRELLSHHESILHTVTTHTPDILFLTETKIPTRLHYSMGSAKKGLSSHYQTYTSNAPYNPREGTRPHAGVMVGVTHRFSRPSGTTDMNAHNTDSRLAGHVCHIRIAPPHSTPVHAIGIYAPSDDATRAAIYKYCTDQAAKTTAAKEHLLIGGDWNAVLFPSDRSTGQLNATDRAHIAFTTSAGLHPLTPPTHEHPRPHTYLQDQATAPHMSRIDDLLVSHHTHATITTTGGGQEAVHECGDALDHRALLSSVPLAALRLYPFPTAPAAPSDPDAWVNYHPPTKDQREKARIKMEETIGQEIADLLNTLHPAHLAITNKLYPAGLTPAQAERNTPSPAEFRALPEVSAADTTSISNTLESILQKCLDVLKSYCDKKPPRASTTSPRHHTSKTVTRLLTATSKLKERLTAALTVTNAAGATPPTTSPHPAPTPPPNTTSPTPTPPTPAEADTPTAIRSQLLNARTLLRAAKKEARKLNTKRAARAFRRLVATQPKRAHQKIFDETDQPRGTPALTDPTTKEVHTAPEKILSSIHQHFTAQLLPINGPRTGHYDIPHSEKQYPWSRPDAPDRMPALSKPTDAPATLLPGIADSTTFFGCVNHLSRRKAPGPDGIPNELLQTIPTSLQTAIHQLMTLMWVKAHIPTHWTQSDTVLLPKKGDPLLIQNKRPIALANTLYKLYTSLITVNAALFSEQAHIFTESQEGFLRGRNTERQVQNLLHAIEDAATTGRDLFLLYIDFTSAFNTIDHDKLLIVMHDLGYPTDLIEVVRDLYGKAATSVRTEHGTTPPIPIQRGTVQGDVLSPLLFIIFIEPLLRWLHVGGRGYQYGCLTKAENDKHNLSSGAFADDLVTATTQISNLRIQVEKIEKYAAWGGLKVNVSKCQLQGILHGRARADPTLGGPRSKPHQAALARMLEGQIRIDGTAIPYKPPHESYKYLGIHITPTLDWSAQVQYIREKIKKRGQRIATSLATPDQKLRMIQLTIHPAVAYSLPFMPYSTHDVTSLDSLIASTAKMCYGLKRGFPTRAILQPTNALGLGVGSIRELYVRRAGKALVQALNDGGRLGAVTRAMLHLQHSVAQKIPADQLRTQCRFYTSLRQLSLITDAGLELTQQGSAYHTTLHGLSALLARTVPPGADAEQALPFRLIQPLLELTSDFRELLTPDRTCVIDANTLKNTWPRAQRRHRLALNRLTLALHAETRTRAKTHNSTAPLTTAQRTLPDGHTFTGLHTAHTAPAAVDWGTLNRFLRQRAPATGQTANAGETAAATTAAATTAAAEPEEDHHAGENHAPAQTRRPGTQQRKRACIKMVREPEGRGSPPADAPAAFDWDPSLDPLTEAHCADLIHTAPSLLGKSKPQNPAAHLRGLLLGPTPPATFTHRHKLSQEEQDAYLAATSDTWKHFSETYRTKALTTTNTLYGQQERVQQVIAHTTSKGAPFYRVQWEPTVITPGSLTLYARNRYRPKPGGLTWLLTPGNEPRVLVEWEDLEEPAAILDAQDNKQELLDALNARLAVPLGPRPPPPATDTHLSHDQRQGRWTDASNDTARGQRTLRHYVDINVEPCNPSRDIHPTQAYTVQLGTVLDPGSPACGTHLAHVYDPRGRCIGTISAEQLSLLWQRYQHAQTTWPKVHAKHDQGRGFAAAIARLLLRYKPGGGSKSHPVTEKGECMLCEGLTQTLHTAIGSTTELFASPLNVSDAATTYYTLYEEDMLFGANYDAYSQPWDGVAVACPEPNTEDGAHAVRWALAWAEHTETLTNTRNPPTTATLLILPTQRNAPYTRYLAHPRVTLLGSISATTTHALLGQIHNDTGITLKHDLVLVSNTPGAQLAQPIRDALGTSLYLSGMPVDPQPQLTWAHTRWVTKQVRRMTRTRPAAPRVTPPPVPATPATLAPFAATQPLRLNPYEGFYTDGSVQKDALGQPSAWGAAAIDARTLRCYQIDVNPGQHGCNTITRCELSAIHQVLKLDEVQALPEVTVYTDSAASLFLIRKTINQPQLLTFSKHKALLDNILALLKRRSHAGRRTNLLKVKAHSGIAHNELADQAAVKTAKGEQIPGAEWLVEESDNDPRSKYYWIRKIIKPTVEGVPREKNEGHYAHDLNRGIATLAAPHIAQGHTRETLYTGFVANAIPDLDIKSSTRTMNLQSGRHRKAKRCMDYLYGQLWNNKLAARFGRTVTGRRAPRAGPDTPAPCPLCRGPDSGGHILGGCHNPQLRAMYIKRHNIAVQTIARAISRGDCGGCYMVMDATSKADLPDYAADNRLPPWLLPDQEGKPAGRHLHYRPDILLIPSISLAAALNPDFVVLPSEHDTIHIIEAGYTADTNHAAKQHEKAQQHQALAADLREAGWKVQYTPQSAISLGFAGTIRKDLHPLLTSLGVTSHKARQCCDTLHDHAVATLNHIVLTRRRLERGLPPGDPGGT
>RandI-5#LINE/R2 3-7370 [Chlamydomonas]
NAADRTGPLDSADRLHQRFLAQTGLLPARGTMTTEGEWSYEQTQHGVTTHRSRIDDILMCTTTLTACPSPHEHVSTVAGNFDHKPVHIKLPADALHLWEAPQPAAPPATTSEDSPRWSRVTLPITKKQLAAAAAHLEDIMVEATADLHNASKGAVQVIDNALKQHTKNPTTYPANTMQWDLAHNRIVQQTDVNQLAERLGKALEDGLTCLLEECTLKPPHTGKHHLSRSAARHLKPLWDKEVELKQTLTNLTAGGAAPDTTTEGEAATIRGQIKDCQAQHRQLVADRAKAQREAAAAALQHTLATRPAHGHKRIFQKEATERGLPAVRNPETGEVVTDPPSILTALDGHFRKLSAPPRGPRTGEYRLSPGATRGYPFELPNATDAFTLERNRHPEAHSMLSSMADPANFDHCIAHLSRNKATGPDGIPNELLRILPHGMKRALHNTLKIMYVKSTIPESWATSDTVLLPKPGDALDIKNKRPIALANTCYKLYTSMLTLGIGELAGPLQLFSESQEGFRAYCNTERQILNLVHVLEDAALYGKDVYAVYVDYSSAFNTIDQDRLLQIMFDLGLPDDLIRAVRNLYAHATTRIRTEHGCTSAIPIERGTVQGDTLSPVLFILFMEPLVRWLHAGGRGYRYGCLSPEDNARYHCSAAAYADDLAALTTTLEDLQIQCDKISDYADWASLRVNHTKCAATAIWHNKSRSTPTLDGPTGQATLNAMHRELTNKLRIGNTTVPYYPPTKPYKYLGVQLTFSLDWKAQVSRVTETVKEKGTAIATSLATPAQRLRMLQQCVHTSIAYAFAAMPYTKQDIANFDATLAGYAKRCYGLPRSFPTRTTLLPIDEYGLGLGSLLPQYARVANRALVLALNDTGRLGVVTRALLPRQHSLAGASLAHHLPADRGRFFTTLQQMTLAREHGIQLFYKGTPYATPTWSIVEALDAAAAARAAAPLPVEHVLPLAELQLEFSHLVDRNTSRHLISTRELEKLLGASRVRHKHKVALNRLSLALVATAGLDGDQMPPEKHGSPNPLPPTQRVIPPLEELQALSARNDPRPPGMAPPLTALMTGGPAPQPLTPAPNTTTQMDIEEASPLYHNPPLQYTPTALGQMAPTPAPAADTAAPVAQPEANLRTRPRKTPVMRTPTHPTAHSRRVTKHAAQKARIAENTRTTPDDLLTGDKAAISTAMRLTNGDESLAVGTRGYETARSVFTALAKDMSRHNHLCKPHPRDPPSFNNRTPVTRTQRPLAPAITTLLTANATMPSTGAVQTYLHQGQPAAAAAEDPMDVDAAAPEHDQMEVDDSQHDLMEADDRQQASPLRLSRRRGKQTIWKLARERVVKDLVHPPTDDCTNGDAQLTYDLDNDGQELAAILYRTNQQTATDKEIARKRKAGEDTTNTREPYFAVQWKPSVIPPGLVTAFSRMGYATVTDVRCYKHPLQARPRATQPHPDGAGTTDADTATAAQPAGILPAHAPPTAPAPGPLETTHAPRAALFSSRSTRLLRQVTWANSNERERDLKHDLEWEELISEYTNRLAAGPDAPARPTRPPKDRNLTMRQRQGRHDDDPDDQATRARVTRAATTISTVPSDPYHDVSPPGSYAITTPTAGRALPREAHVYEPSGRWLGMLTYTRLQTLWESFNRTNNNRTKAFEEAVAALLHRYRRDPGQTDHKTAPQHQTSLPSATVRAVVRSLRNTGRGRVKEMFASPLNHTTDADEYWSREAADVVFGAQHDAYSTAWTGLHYAHPPANPDASRQALVWALASAETVNNSPEPTLTILVLPKCATYPHTQWLTHPLCRRLATWTNGELDSPGTAGMEPGLGTDVPLQKQRGAILVAVGNTAGLNAFTQSWKGLRSSLVAGPHAPATVADTHLGSGTLNTSCPHIPRHTSKHAKYLATHLNIATVVTPDEAPATPRLNRTQFQRTLPLAHNPEEIVWTDGSVSKTTTENGRELQVAGACAWHKDRVVYVNPNGFGCTNTITRAELAAIRAALEEFGGETSMFAKKTLTIASDSAASLYLIKRAIDEPRRLHLSKHKALLSSIADLLHARAKRDAHTVFLKVVSHTGLHGNEEADKGAADVATSTKPADVSELADNNPHAAHWWPATTRTREDGSTTVHYISDLNRGLLKTLDPSSHGGHSKHTLYTTKWAESAPHLDTRASTAYMTHPGAGHSLRRFIQNARQGGLICPARLALFKLRASDTCALCAPIHQRAGSPPERGNAGHLAGHCAHPQLVGARIAKHNAAVRMIAECLHHGANGGGYMLMDASSADARPEYCAGTCPPKWMLRNNIPEADRKRMRPDILFIPSLPRSDVGASGPRGLTTAGRRQHKVYLIEVGYTSDLHHSEKCDQKQAQHTRLADALRDAGWDVVYKKEQIVTLGHGGTVSNTLEPLLRSLGATTTSAKSCCSRIHMHSVISLRTTSLLYYRLEREMGIVNSRQVGPTGGATAAGPSPRDPG
>RandI-6#LINE/R2 731-13627 [Chlamydomonas]
MLLLTPFASIELTSAPQMHTSPVTLEPASAMRPHAAAGLTQTAAPSHHASLSLATKMKPFHVDFTGDIILRPDLHYLYNAAGLTVGILHPLPEGNIALWQTQRLRPAAGPIPASVLGLADGKQRILLMTACAGCLNRAMSLSSLLEPAGNYLRVIQQNLLHTKIDPRLRQLAEAAITKFNEVLSSRGDLVNSIADAAIKAIGMPATNEAINNIRSLIYEARAGSQTWTLSDNQKVAALGSKRTAFTAGELLLHSACITRHPILILLLTRRHCLAVAITLPVAHAAAFLLDLQTHERWILELGPDNSITPAKRRPTVAILAGASRSAPNSEGKVSFLAASEGRHDLEKVITCSYTTDQAHSPVYSPLFRHAPNYRLKCSQLLPAYTSTTPPYPQVLPFTAIMVVQCAARAQDAAGDPNKVVAHMAYEAMDKICAGKPTTPLSTIVEGTKHHSKAPGNYTSTQTYGSSPPIAHALSPNTPLQAPPTPPPVMPRSTEAMTAKDPGETATANIRDWWGSPLGACVDVRFVKLHDADLLASLGANRNQLYGDVFYAHFSSADVCEAIQRTGGLYLFSDTAYLRAVCLQSRPDGGAATPEMMDLLEEIGIQIELLDPLLSDTGVNELGARVAQQLEQGMKALFPDIAQHDHLTNRIGLYTTFGTVQSLTTLDRDNPVEFLFARKGGKLAPIIDLQPAAWQANDRQLFHLSDSRLYLLPCNALSAAAILICINGGRNLASTMLWPELNRGRVYLTDAALDYQYKLNTGSADELWEHPCAHLGLAAGLALTGQAGAGMVPDFVGAKPIHAARAKTAVRHQLQAADAPEPLPMPGLQLNLGESGPVLDAKTVEAAAEDEMEEMDLASLLVSSALGLKPGSTAPAFTASTTTHPSSTHPHLTDKPTESATPPNCLTPHSSQCRAPSASAEPTPRHNAPPATCRLGRLRSLPHTPGYAGILINASGYSGTHSTAYWDRVAQTRVAQVTEQGNDAGSSKDRRMHDYAVRQARGDVGPDCAVVTMHGTIGTLTVLTHAGLARDTNGVCREVHLAQINGWTNGPLASRMLLFYVFLLLPIAFRRYGQYARGGPKDDKCVSAAVDSILRAADGRLRPGLLAEDSKANCTRAMRVRNPPLHIASCSQDNARPSVIRRHHELCLAHATATRRTNSPALTKTRCCPPSPARIRLYFPHASRSAPRPKPPALADARQAVQGQAKGRGTQCLLFTAGSKPPASSSAPPSSHSGRIYFEQQELSFCWIHAINNLLGAAAVSPHRVLLYLEQLLRQTRGRENTTEIFALSQAFTPAIGQFSIHAVNHYLMYNCHRANQALALHAHDAVRPGDSPHSVTRRHAQATNGFLIFTPGYSSGIYGHVLAVKRHGANWIILDSADTQPRTIQHTTTLDMAGTIFTLSTRTPDTPPLLPLCLNGIGPPANWAPDRMGQPSFRALNQLANHLTANGHQLLDTCSWGNNCAIFGTLAVLPGSRVPLIPSDPAQWAPMTGAIRACIASRLEHLTAPGTPGSDEMRTHILGLYEESPHPENTIRTHCRNIRDTSMLTIPDLIALQSLLPGVQIHVISPGYTDWLTLPTPQPNDTRHDVYLAHVPHSWALAGFPTAFPVTDCNHYIAVTRHTWTPGSVTQDPSPLFHESIWDGGPCTRDIIVTHAKSPTRSPLPKKARTNTITHALLRAMGSPTNPRKAAKRALSLSPPAPRKTTRATTNCEAKRAPNTRAPANPHTPTATPAVTNISPQQSPPAAPPNPPPRLAVKARQATLQAFLKAAQAPREDPATQVAPTHTDACHLVTLNARGLLSNLTAIRDELETWDADILILTETKTRAHRTRTERDIIKNSLKAYTSFVHSTPRPPPLKGQKQDPRRHHPSGGVTLAVHTRYARKEHITCLPTPAQLQGYMVHLRIATHSSLPLHIIGIYCPPDNKSTRDALYTYITRATKSAARLKEPLLTGGDWNAAAYDTDRSTRTGTQGDKTHQTFLTRTSLKPAAGAHTQPRLYTYTQIQHDTITHESRIDDFLANTHALRQDSPAREWTTECAGTTDHLALHLQTTLPYKPPRDASPHTEREPRRQPDDASPTLANIVKPITQSQSRAISQQWEAEGTTALVTLHATLALPNCSAQQIIDSTVAAISHHTNSTASTRTAHDIITGARAQLSAIDLNAASTALYGALAVGAKLMLQTCPQKPPRTSRAKPSRTEAKKLKRLIAVEKQKKQQYLALVRAAQLQEPAIPPPTAPNPSQPEPPATPAPATAARQEWQDALKTRRTTQKETSAKAASKWLTKISKLFATSQSKAAKIMLGKSGPRQNLTAVRHPATQHIATTSSDINDALHAHFQAAAEPTGGQRTGRYRPEDKDTTFPWNEPGAPDGGFLLARTAHPDAQSLLPNVADSSNFQRCMQALSRNKSPGPDGIPNELLKCMPEALQSAVHTLMCVAWIKAELPAGWSTSDTILLYKKADPLSISNYRPIALCNTLYKLYTSLVTRAATEACTDLLIHSEAQEGFQKHKGTERQIMNLLHVIEDAALTKRDLYVAYIDFSNAFGTIDHDRLLTIMHHLGLPTDFIEVVRNLYSSANTTIRTTHGRTNPVHIRRGTMQGDTLSPLLFIIFLEPLLRWLHYGGRGYRYGCLTNSENDEHNCSSLGYADDLTVAANSRDNLRCQTDKIARYAAWGGMRINRDKSACTGILHHYASANSTDKSIKGPACDRTLKRLLAGHIHVGTCTKDGKRSAITLPYIPPHKPYRYLGVEITMTHPQLKAVKADLTDAGVELSRYRKLPRQCYMLIKQCLKAKVAYSLPTMAYTQPDIRALDAQIAGIARRCVGLPRDCATRAILLPAELGGLGIGSLREEYVQRASRLLVISLNDTGRLGVVTRRLLHLQAAHAGSDLPLHDMKRAGQFFVTLKQLTLLQDHDLLAMLQGKEFTAALPALVSKLRAAEATTPAYLRADWISPLTIDLGLNLADLVDANTGRHIIDTTQLDRRFPKGRVKDKHKRALNRFTVALCKPAEAPPKSMGHKPLPMQSRTLPAGVSKADLNSAGDLPKPIPQRTLTSLLARWQEALPSPAAPPKPSLEVLQAKPKQTAKQRHSHFIKHDTRTRNPEVEANDDALPGSTVHDPSDPTKDLAFYMSAAREFAPLAQQCKTLGTTRWTGTWRSPIRQMPARALITGPHTHTVHALLHTRPYQQPAAPTYQRLYLPDGCPATTPPPAPAHSHNRRKRGSQPTRCPYTHHAIQPRAPTRAAAPRRDSAAAQPSSRPAWRKVRDNALNGRLPQSIAGVQAAQHITAHLTNRDDIIAAVVSGPMTHKTNAPPPKRKRKQGPPPEEPPWAERCRYRVRWQPTLTTNGILRAYELQNYNATSTTKPPCRLWGQGIRRFMVQVHWAETEDPLSSLSENPGWAAALARYTLAQAVDAPPDPTPPPALDNHLTSKQRQGRWRDPAPSEAARKRAILRCSTIDVKSCNPDTDIHPTGQYCIQMGTREPGSATGTPSGPPQDPDPPARVYGPDGRCIGTVSAARLALLHARYRTLNPTHPPERFAAALASLIIRYRPSKRHKESSTNPAHEVTLCPDLMSTLTSHIKFQTEAFASPLNAHCDIPAYYTTHPQDSEFGAAHDCYSRTLDGISFVHPPPQPEHTSLAMAWAVASAEAATPHTPHLSVVVVPYGDTSGYTAWLQHPLVHDLGHIKPAHTWAAMASGLGQPQELPAHRRGLHLLCVTNERGRLLLNQALESGLALALADALGHTPHLATRKPPTDPDTPNPWPPTPRKLKRRILAQSSQTPQPQPPRDAPTLPSPTELATLYRAYVPLAHTRGSAVFTDGSKVPHTREYTGLGAAVWDASDNRATHIDEDIAFNTPLSTILRCESSAIRTALRLHRDTPHLRVYTDSLVSLFILRRAIMEPESLHVSKHREMFGTIVDQLAERALAGHKTSFYHVRSHQTDTCVGNQKADEAAQAVATRTVQPDATETLYSHPYEPLEGWIAQKEIVEHNGNLEERLRYANDLNRDLKKMARKSTATGYTKSGLYAELWEAARKHIDERYGLNLFDKFSFEEARCAFKYRWGLSWNAKRAARVKHPMPGCAGGECPLCRGDDGGTHTLGGCTHPRMKAAYIARHNRAVQRIAKAISQGHYGGCVMYMDAGKDAPTYSGGTRIPAWMLPSTPESVRKKLRPDLLVIPTLRMHRSGLPARAPRTRRQRSAHKVYVIEVGYCSDLNHPDKRAEKLQQHEDLVAALRDAGWDVMYSPDTVISLGHTGTVTPHLHALLKTLGCPTQSAHSTCRKLVQHAVHTTTAITALRREIYSHKWPGRPP
>YURE_Ci_pol#LINE/R2 (perhaps NeSL)  gi|34392547|dbj|BAC82601.1| reverse transcriptase [Ciona intestinalis]
MATSSSSVSSGNVQTEVRCVYHGKGDLLLECPVAHCPSIHPTVATITKHLKKHHTPQFEQITTKNLTITYTCSQCSFSTTGLTQHHISKHYKTCKGVGAVQEGNKGRFCCPACGTRWALLCKARHHFNNVHFEYDTPPIAAFSGTPYKLKKRKFTIINKALTYSCPLPLNQLLCPLWSCSLTILNKPLSSVQQETAHGDGSQGQSYVPTQLRQVLRARCHCGNPPIGKGHWASCQGKRPLSSPKGGRSSPTPPANLTLHFLNYLPFQLPSQSSSPQSSTLDPTACKARVPIPSFLRGDCEVTFFIIPSVNFYRPYLSYPLRMFWRNRTSSGHCSLHRVVRGFVRERLVPHPRSKSPARTPLEFLCEFRLAGVFPDPGKVASLRPVPAPLTLCLSPPVAGPMISCEDHSAPPSVRSSSPIPNSPASVSSVEAHLSDLLDKVSSGELRPLSPTLPSSGFFGPLLPPTPPPRPTPSAEKASPSGLSYLPCREVKIASIARPSPASQRVGCDADRTGPSLNPNYQQTSPPSTPSFSPIVRPPKFPRSGAKVNSKSKPPGVRPRRAKPIEPGTESASPVDVDTISSSVQEPCTPENRTPEFFYERKWLVSILNIHEREGSNFFQFNRDLEYWTQLLSGSQKGGRAKRASYNRGAANQAMKNRDSGRKDFDPRPVAGHSSGGGTELGSRPRYPKGARLRADFWRDMKGTVRKLLDGSNGERRCGIPLDIIERKFRQVSMPGWIDHRRYAAGASPSLVTQAETDVAITSEEVEAVLSGLNVQSAPGSDGLSYRFWKGLDPSGRLLSCLFEIVRRHGRIPGAWPTCSVILLCKDAQGDVQDVGNWRPITICRTLYKLYAAVIARRIQTWAKQGGVLSRLQKGFMPVEGVFEHVFMLDTVLSDAKLRRKNLLAVFLDVRNAFGSVRHECLLKVLRHFDAPHYLVELVRDIYTGATCRVRSSVGETGDIPCDRGVRQGYPLSGILFNLVTEVLIPGLSAGNDGYRMACLGGKLTQVLAYADDLVVVTENRDQMLRQLGVCEEFGRWAGLAFNQRKCGLIGWRTLRGGRRVALEDPLLLNGVEIPLLRPGEHYKYLGAMTGVMSVPRTGSQLIKDFRARLQRLFTSFLTPHQKLIALKRFLLPSLSFHLRVRPIARSELIALDRRVRECLRVAFRLTKPSCQAVFHTPTDMDGLGVPSVCSESSILTIAQGFKVLTSPDGTVSATASARVKLYAAKFGGLTEAGPSDWARYLSGDDVNGNSTRKPGANLPSGLWTRVRCASRQLGAVWRVCPENGITVRVRNSVITSRDRRKLIRSFHDCSNQQWKEQWMQHPNQEKTAAAHMAYADANRWVKQPSVMEPHTYFFALRARLNLLPTRVSRAIYSRDQHPDILCRRCGASVESLPHVLNHCPPNMSIILGRHNLVLQEVLNAVDKTQFKEISVDRTVPEHMSETGEALRPDIVARRNDGSVVVVDVACPFDQKANFDEAAKRKLLKYDKLCCNIAASTGKPVECHSIVVGSLGSLAEGLSTSLRALGITDFARSKLVACHQG
>HERO-1_BF_pol#LINE/R2-Hero 2-3070 [Branchiostoma floridae]
PVSQQEVVAGATPSPQEPAPGRKEKIKWPRANNKEEWEKLDDDLHQILEQGLKGDVERKLNQFGNLVYSYCSERFGTYKKEGKEAREKQTSRREREIAILVRRRRQLRKRWRKAKQEEKEGLEPLWEEIKSKLKSLRRAERLRRKRKRKAKERNQFFKNPYKFARNLLEEKKGGSLQISREDLELHLKQTYSDPQRDEELGSPGYVPRPTEPEIPFDVSLPRWSELETAVKKARAGSAPGPNGVSYQIYKKCPKVVRLLWKLFRVAWKKQCIPSAWRRAGGVLIPKEKVSTDIKQFRNISLLNVEGKLFFSILTKRRITYLLANNYIDTEVQKAGVPGFPGCIEHASTIWQQIQMARRQKEDLHVVWLDLTNAYGAVPHSVIHYALNFFWVPETIRTMIQNYFQDFRVSVTTPQFTTGWQQLEKGIAMGCTISPLLFVLGFEIFLIGARQVAGGIKLPSGQRLPPLRAIMDDVTSILRSAPCTRRVLQRLEELTDWARMRFKPSKSRSLSLRKGKSSNRVFSINNQDIPTIQQEPVKSLGRLYTSDIADTKRGQELVKQAVEGLRAIDKCELPGKLKVWCLQSVLIPRLKWPMKMYDIPLSTADQVEGKANSFVRKWLGVPRCLSRTALAGRNKLTLPITSTSITEEYKLEKVRTALELKWSQDNAVRAAYRGQKTGRKWNPDGVIDQAVSRLKHRDIVGAVQQGRCGLGWGERTLRWDKATQRGKKQLVVDEVKRMMEEERKVKVVGQHQQGAWINWESTVDRKLTWKNMWDKPDHRLSFLIRAAYDILPCPRNLSRWYSKEESCELCGANKANLKHILSACTTSLKQGRYTWRHNQALRILAAALEEGRKRVSSNRVQNQSFIPFVKEGQKAAPANRSRGEGLMSKGGWEMTVDLDTRLTFPRTICETTLRPDIVLWSPTQRTVVIVELTVPWEENVQAAFERKKLKYQDLVQQCVENSWRALLYPVEVGCRGFVGTSITRLCRELSLSHKQLVKALSEEVERCSFWLWVKRKDQKWGTKE
>HERO-1_PP_pol#LINE/R2-Hero 27-3626 [Physarum polycephalum]
MVTTRSMTSDAGRQKLPQASKPQDKKVKPQRSRLKSKEPDQHTSYVDAPVPTNKQTGTRSCVCGYSHKFHHRVILHMRTCSSCKDSLTPEQQTKSLEANAEPSINPHSPSDTASPDCSDQDQQFSPYQTLDQDHFNKYTPQPKLKLPKPNDHTQWSSINKELEAVLHQRLNLEELHYRGITATVNAFLSIVHWFISIKCGTVNPAQTKKERQQEDKTRHRDQTKEMLRKLKAEIRKKWKKAKQTKDKEAQKEARAKFRKVITALNKLRKQEQQVEKELIASTSRREFKRDPWQFCESRLGQYSSKGTRSSRSPSFDKGHADAFFSATYKDVGRDKSYTTPPQLEKVPPPPKSPFNLAPPTLGDVKYLLHKKPNNSCPGWDAIPYLVYKRCPILQRYIHSFFTRLWDEQVVPEGWQIAYIILISKTEDTSKADQFRPIALGNTLGKLFFTLVQARTTEYVLQNSYLDISVQKAFLPKMAGCVEHTQTLVSALRDAHQSQRAITVTFLDLKNAYGTVHHSLIAYALKRYHFPHSILEIILSYYDLLVAQVVTPNFSSKWVHYSIGLFQGCTLSTILFNITYNMLEEWLAPLNVPGYCFKKTELEVKHLFFADDTTFVTGRYRENQTLLDHTGDFFDWTETMQARPSKCMSLAYARVEKGHNHLVEVLEQKSYAAINPRLVLQREVIPVLFKQSFKFLGRRIGGTLDDEKQKQHLLSQCENMLESTHQLSLSGAMKLWIYNNYIVAVLSWQMMIYDHAKVWGKRLEEAANPYLKIWAGLAYSATPGMLYQPTEQKGLGLKSLSIVLSQLQVSKFHLLKHSQDPKVQALYNYKKEQTEGKKRWNAVSELEQLERTVALNQLTKGSQTGRAGLGNQKPPKTKDPNKEHRREVLDACKKKELEERLIHLHSLAIQGQWLKWDEHMTTDRTWTNLLYHLPQELFEWANNAQLRTLPTPDNLQRWNRKTTGDCALCHTKNITLLHILNCCSYSLHHNRYTWRHNGILKLIAQVVESNLNSLYKPKATQHITFIKAGEKAAKSTPKDPVGILSLTNDWKMSVDLDRDTYSFPAHITQTSLHPDILIWSDKVKHILFLELTVPLEENTAGAQIRKLKRYHDLEQACKANGYQTHSLTLEVGSRGWVAPSVGTCMRKLGIPRDQIKSLIRTLSNTALCMSYLIYVNRENRSWKPWEWKVSLLVGEQPALSS
>HERO-1_SP_pol#LINE/R2-Hero 1-3123 [Strongylocentrotus purpuratus]
YSTSLKIDEDLLNYDFLGKHDRRVLQKAERRPSIKWPKMTNISEWTNFDEDAAYNVNMLMHGTVEMKLSTYEKFVHAIAVQHFGAKDVHIHKEPYLNRRKRRLEELRKQRRDLRKRLRDAPDDQKEGLTVIGDQIHNEVLILTRKERSAKKRRERKRTRSRFMQDPFKTAKSLLEPVSKSELNCSKDELDRHLQQTYSATSNEEFEPWQDNIPPDLPSEPFDDALPAFQELKNVLHKTRNASSPGQNGIPYKMYKKCPRLLKIIWKLMLDVWRTKYIPVQWRVAEGVYIPKSATPNEKTITDFRPIALLNVEAKMFFAIPAKRLETYMRKNGYLDTTVQKGGVGGHPGVWEHVATLWEVIKDAKTSQKNLVAIWLDLANAFGSVPHAAIAFALKWYHLPESLVSLMNNYYVGLYARFSVKDWNSEWQKFSVGIFMGCTLSPILFVITFNLLNDFLKSTPAKQYHLKKRDFNVPVMKEYMDDITIITASVESAGSILSKVNDFMDWSKMRIKPVKSRSLVVHGGKVKHIEPFAVDGQTIPGVHNKPVKFLGRLIDGNLKDNVARQDMMVSLGRWLHTIDKCVLTGVMKCWIYQYLIVPRMQWKLMIYDVPVSQVEKMETLVSKKLRRWLGASKNLTNIALYCHQTKLRLQLEGLTTTMKKTVVNAALQLRHSKDNVVTSIRPQSRHGHKWDAEKAISRAEDSLRMEDIVRGQVGRRGLGAGQFRKPVRKLTQREVRTEISELVVKEHDNLNFVRAVQMPIQGAWSSWEGVQQKKLSWRNLFDTSPKLLQFMIGSTYDTVASPANLKRWGLSEDDACKFCQQKATTTHILAGCPIGLQQGRYTWRHNRVLGIIGDALKTRLSEHNQKPTQTQASFIHFVREGEATNVSGRRSTGRQRTCLDGASDWNIRIDLGEKLIFPPAIVVTNLRPDVVIWSPTSKRAILLELTVPHGANMQRAHERKSRKYEELLLEAEQNGWRIELWPIEIGCRGFSNNTLLRALGQIGLGARLRNKIVSLSCSCAVKASFHLWLRKDEREWTRPIST
>HERO-2_BF_pol#LINE/R2-Hero 147-3581 [Branchiostoma floridae]
ESIPQHATKNHKEQYPQGCPRGGEDEHPIRTVQSVLTPANGESTMNAVCVCGKVCKNQRGLRIHQTKMACLRRVQAEHRSGAVATTVEPVLSASAPGQTEEDQGPEAPHSARNLRATPAPPQGRKSDHHRVKWPAANSKEWSQFDEDVDMILESVSRGSTDQKLQSMCTVIMSMGAERFGTIGQRKPTDTMKPNRREVKIRQLRQELKSLRRSFKASTSGEERAALAELTHHLREKLRTLRRAEWHKKKGKERARKRSAFITNPFGFTKRLLGQKRSGNLTCPVEEINLHLSNTFSDASRDVDLGPCPLLVTSPEPEVHFDISEPTLKEVRETVKAARSSSAPGPSGVVYKVYKHCPRLVVRLWRILKVVWRRGKVAADWRQAEGVWIPKEEESSKVDQFRLISLLSVEGKIFFKIVAQRLIKYLLDNQYIDTSVQKGGVPGVPGCLEHTGVVTQLIREAKENRGDLAVLWLDLANAYGSIPHKLVETALTRHHVPESIQNLILDYYSNFWLRAGSSTATSAWQRLEKGIITGCTISVPLFALAMNMIVKGAEAGCRGPVSRSGTRQPPIRAFMDDLTVMTATVPVCRWLLQGLERLITWARMSFKPAKSRSLVLKKGKVAERFRFTLGGTQIPTVSEKPVKSLGKVFNSSLKDTASVQQTRSDLTTWLEGIDKTGLPGSFKAWMFQHGVLPRVLWPLLVYEVPMTMVEQLERTISRFLRKWLGLPRSLSNIALYGRSTKLQLPLSGLTEEFKVTRAREVLMYRDSSDSKVSSAGIHVRTGRKWKAQEAVDQAEARLRHSVLVGSVAVGRAGLGSCPKPRYDKVSGKEKRLLIQDEIRAGEEEDRRCRMVGMRKQGAWTRWEHADSRKVTWPELCRAEPSRIKFLISSVYDVLPSPANLHVWGLAETPSCQLCQRRGTLEHILSCCPKALGEGRYRWRHDQVLRVLADTVSNAIQSSRSQQPPKKSIVFVRAGEKTRQQPTSAGGLLSTARDWQLLVDLGRQLKFPEHIVATSLRPDMVLVSESTRQVVLLELTVPWEERISEANERKRAKYAELVVQSQSNGWRARCVPVEVGCRGFAGQSLAYVLKLLGVRGFRLRKSIRDILEAAEKASRWLWFRRGEPWKPHGHRSGNDQPRLGRPGEGVW
>HERO-2_DR_pol#LINE/R2-Hero 87-3512 [Danio rerio]
RHGKTALGTVWVSTPACVFREREPKQATESPTEIYPQEIPRGGEDEISNRTDQRLMTHANEQTTNKIYVTCICGKLCKNHWGLKIHQARMKCLEQESKVQRTGPEPGETQEEPGPEATHRAKSLHVPEPQTPSEVVQQRIKWPPASKGSEWLQFDEDVSNIIQAIAKGDADSRLKTMTTIIFSYALERFGCIEKGKTKPTTPYTMNRRATQIHHLRQELRSLKKLYKKATDEEKQPLAELKNILRKKLMILRRAEWHRRRGRERARKRAAFITNPFGFTKQLLGDKRSGRLECSIEEVNRFIEETVSDPLREQELEPNKALISPTPPAREFSLRGPSLKEVKEIIKASRSASTPGPSGIPYLVYKRCPGLLLHLWKILKVIWQRGRVAEQWRCAEGVWIPKEENSKNINQFRIISLLSVEGKVFFSIVSRRLTEFLLENNYIDPSVQKGGIPGAPGCLEHTGVVTQLIREAHENRGDLVVLWLDLANAYGSIPHKLVELALHRHHVPSKIKDLILDYYNNFKMRVTSGSETSSWHRIGKGIITGCTISVILFALAMNMVVKSAEVECRGPLTKSGVRQPPIRAYMDDLTITTTTVPGSRWILQGLERLIAWARMSFKPSKSRSMVLKKGKVVDKFHFSISGSVIPTITEQPVKSLGKLFDSSLKDSAAIQKSKKELGAWLAKVDKSGLPGRFKAWIYQHSILPRVLWPLLIYAVPMSTVESLERKISGFLRKWLGLPRSLTSAALYGTSNTLQLPFSGLTEEFMVVRTREALQYRDSRDGKVSSACIEVRTGRKWNAGKAVEVAESRLQQKALVGTVATGRAGLGYFPKTLVSQVKGKERHHLLQGEVRASVEEERVSRVVGLRQQGAWTRWNTLQRRITWANILQADFQRVRFLVQAVYDVLPSPSNLHVWGKNETPSCLLCSGRGSLEHLLSSCPKALADGRYRWRHDQVLKAIAASLASAINTSKNHRAPRKAVHFIKAGEKPRALPQLTTGLLHKASDWQLEVDLGKQLRFPHHIAATRLRPDIIAISEASRQLIILELTVPWEERIEEANERKRAKYQELVEECRERGWRTYYEPIEIGCRGFAGRSLCKVLSRLGITGVAKKRAIRSASEAAEKATRWLWIKRADPWTAVGTQVGT
>HERO-3_BF_pol#LINE/R2-Hero 215-3220 [Branchiostoma floridae]
MALPAVRSGPASTWTLLITLVIVAAKGTDGFMSFKLPLLSTDTWSGYNNDVKTLLGPLHHELATNEMSPKLAGEGFSDIMCDFMASKPEFSHTTEESHSEGYISHEPQSLAQVKRLKNKLRKKAFRADATPEDRKAFRDAIKTYSFMKRQQKRKETTKSAAHQEKEYHKNFWKFAGKCAKGQLDIPPVKPAFSVYYANEYYKNKYSHPTRVDFNKLLWFPHLPVEEQLPANSFDMSPVRPKDIKAVLSKRCATSAPGPDGIMYGHLKHLPACHLFLSTLFSKLLESGDPPTSWSSGNVSLIHKDGSPEAAENFRMICLTSCVSKIFHQILSERWAKYMTCNDLIDPETQKAFLTGINGCVEHVQVMREILAHAKKNRRTVHITWFDLADAFGSVEHELIYYQMERNGFPPIITTYIKNLYSRLKGKVKGPGWESDPFPFGRGVFQGDNLSPIIFLTVFQPILQHLKGVEQQHGYNLNDKHYVTLPFADDFCLITTNKRQHQKLITQISSNTKSMNLKLKPRKCKSMSIVSGKPSDISFTIDGDPVKTTKDAPEKFLGGYITFLSKTKETYDILAKTIETTVENINKSAIRNEYKLRVYMEYAFPSWRYMLMVHDLTDTQLQKLDSIHTKAIKTWLRMQPSATNAILYNTRGLNFKSISDLYLEAHALAYSRSVLKADEKVKHALQAKLDRESQWTRKMQKWGIGKCHTIHQQAIHVAKDSEWTSVRKHVKQQVTDMRHDVWTKHQENLLQQGQMLQLLEEEKCDLTWRSAMYNLPRGILSFAVRASIDALPTLCNLTTWGKRNTDKCKLCGNRETLHHVLNHCGVALQQGRYTFRHNSVLKHITDTIIESIDTSRINATIYADIQGYTTNGGTIPVHTIPTTQKPDLIIYLPEQKTLHIHELTVPFEKNIKTSHDRKVNKYSTLAADLETAGISATLTCFEVGSRGLVTPENKTRLRTLFKIVKAKPPKTLFTDISRIAMLSSYAIWNSRHEPYWESETLL
>HERODr_pol#LINE/R2-Hero 13-3261 Previously represented by HERO_Dr_pol, gi|34392545|dbj|BAC82600.1 [Danio rerio]
MTTHRAEVTTSGKTQEEPGPEATHSAQSLLVSPTPAAGRSPATQSCPQVTAAHNSPQSPQSQQVAVTRSDCVPLAQPRIQWPQSSKKAEWLQFDKDVNQILEVTGKGGVDQRLSTMTTLIVNIAAERFGTVTPKPTPSTYTPSHRVKEIKRLRKELKLLKRQYKAAGEVERAGLEDLRGILRKQLVNLCRAEYHRKRRRERARKRAAFLANPFKLTKQLLGQKRTGKLTCSKEAINNHLKATYSDPNREQPLGPCGALLTPPEPTSEFNMKEPCRSEVEEVVRRARSSSAPGPSGVPYKVYKNCPKLLHRLWKALKVIWRRGKIAQPWRYAEGVYIPKEEKSENIDQFRVISLLSVESKIFFSIVAKRLSNFLLSNKYIDTSMQKGGIPGVPGCLEHTGVVTQLIREAREGRGDLAVLWLDLTNAYGSIPHKLVEVALEKHHVPQKVKDLIIDYYSKFSLRVSSGQLTSDWHQLEVGIITGCTISVTLFALAMNMMVKAAETECRGPLSKSGVRQPPIRAFMDDLTVTTTSVPGARWILQGLERLVAWARMSFKPAKSRSLVLRKGKVRDEFRFRLGQHQIPSVTERPVKSLGKAFNCSLNDRDSIRETSTAMEAWLKAVDKSGLPGRFKAWVYQHGILPRLLWPLLIYEVPMTVVEGFEQKVSSYLRRWLGLPRSLSNIALYGNTNKLKLPFGSVREEFIVARTREHLQYSGSRDAKVSGAGIVIRTGRKWRAAEAVEQAETRLKHKAILGAVAQGRAGLGSLAATRYDSASGRERQRLVQEEVRASVEEERTSRAVAMRQQGAWMKWEQAMERNVTWKDIWTWNPLRIRFLIQGVYDVLPSPSNLYIWGRVETPACPLCSKPGTLEHILSSCSKALGEGRYRWRHDQVLKSIAEAISKGIKDSRYRQATAKVIQFIKEGQRPERTAKNCSAGLLSTARDWVMTVDLERQLKIPPHITQSTLRPDIILVSEATKQLILLELTVPWEERMEEAQERKRGKYQELVEQCRANGWRTRCMPVEVGSRGFASYTLSKAYGTLGITGTNRRRALSNNVEAAEKASRWLWLKRGEQWGQxHATWTQAG
>HEROFr_pol#LINE/R2-Hero Previously represented by HERO_Fr_pol,  gi|34392541|dbj|BAC82598.1 [Takifugu rubripes]
VTTKNSXVDYWKDSWQLGKTAPGTVWVSTPACIFREKEPKQATESPTEKHPQEIPRGGEDEISNRTDLTLMTPAMEMTTTVTCICSKLCKNQRGLKIHQARMKCLEREVEVQRTGPGPGETQEEPGQEATHRSQSLHVPEPPNPNRVVQQQRIKWPPANRRSEWLQFDEDVSNIIQATAKGDVDSRLQAISTIIVSYGSERFGRIEKGNTETTSYTMNRRSFKIHQLRKELRTLKKQFKRAXDGDKQALKELYNILRKKLKTLRRAEWHRRRGRERARKRAAFIANPFRFSKQLLGDKRSGRLECSREEVNRFLQNTMSDPLRGQDLGPNRALISPAPPSAEFKLAEPSLKEVEEVIKAARSASSPGPSGVPYLVYKRCPEILRHLWKALKVIWRRGRVADQWRCAEGLWIPKEEDSKNINQFRTISLLSVEGKVFFSIVSRRLTEFLLKNNYIDTSVQKGGIPGVPGCLEHNGVVTQLIREAHESKGELAVLWLDLTNAYGSIPHKLVELALHLHHVPSKIKDLILDYYNNFRLRVTSGSVTSDWHRLEKGIITGCTISVVLFVLAMNMVVKAAEVECRGPLSRSGVRQPPIRAYMDDLTVTTTSVPGCRWILQGLERLILWARMSFKPTKSRSMVLKKGKVVDKFRFSISGTVIPSITEQPVKSLGKLFDSSLKDTAAIQKSTEELGGWLTKVDKSGLPGRFKAWIYQYSILPRVLWPLLVYAVPVTTVESFERKISSFLRRWLGLPRSLNSAALYGTSNTLQLPFSGLTEEFKVARTREALQYRDSRDCKVSSAGIEVKTGRKWKAEKAVXVAESRLRQKALVGAVATGRTGLGYFPKTQVSHARGKERNHLLQEEVRAGVEEERVGRAVGLRQQGAWTRWESALQRKVTWSNIMQADFHRVRFLVAAVYDALPSPANLHAWGKSETPTCSLCSGRGSLEHLLSSCPKSLADGRYRWRHDQVLKAVAESIALAISTXKHHHAPKKAISFIKAGERPRAGPQITTGLLHTAXDWQLHVDLGKQLIFPQHIATTSLRPDMIIISEASKHLIMLELTVPWEERIEEANERKRAKYQELVEECRGRGWRTFYEPIEVGCRGFAGRSLCKAFGRLGVTGTAKKRAIKXASEAAERATRWXWLKRADPWVATGTQAGS
>HEROTn#LINE/R2-Hero  43-3583 via tfasty with HEROFr_pol, 1 frameshift and 1 stopcodon. [Tetraodon nigroviridis]
LTTTNRVVTAWIDSxQQGKTATGAGRASNPACIFREEEPKTATKSPKQRYPQGSPRGGENELPKRTDNMATTQASVKPTAVATCVCGKICKNPRGLKIHQTKMGCLASVQPEQRARFSLSESREVPARAEPYGPQQPHSPEALGETQEERGQESPHSAQNLRAQVAQAPDNPQHHRRVKWPPASKVSEWQQLDEDLEGILESTAKGGVDRKLQTMTTLVISFATERYGTMEKRAAPEKYTKNRRAEKISQLRQELRVLKKQFKGASEDQKPGLAELRCTLRKKLLTLRRAEWHRRRAKERAKKRAAFLANPFGFTKQLLGQKRSAHLECAKEEVDSYLHDTFSDAERENSLGECRVLISPPEPACSFNTKAPTWKEIQTVVRAARNNSAPGPNGVPYLVYKRCPKLLARLWKILRVIWRRGKVAHQWRWAEGVWVPKEEKSTLIEQFRTISLLNVEGKIFFSILSHRLSDFLLKNQYIDSSVQKGGIPGVPGCLEHCGVVTQLIREAREGRGSLAVLWLDLANAYGSIPHKLVEMALARHHVPGPIKTLIMDYYDSFHLRVTSGSVTSEWHRLEKGIITGCTISVIIFALAMNMLAKSAEPECRGPITKSGIRQPPIRAFMDDLTVTTTSVPGCRWILQGLERLMTWARMRFKPGKSRSLVLKAGKVTDRFRFYLGGTQIPSVSEKPVKSLGKMFDGSLKDAASIRETNDQLGHWLTLVDKSGLPGKFKAWVYQHGILPRILWPLLVYEFPISTVEGLERRVSSCLRRWLGLPRSLSSNALYGNNNKLTLPFSSLAEEFMVTRAREVLQYRESKDPKVALAGIEVRTGRRWRAQEAVDQAESRLHHKELVGAVATGRAGLGTTPTTHLSRLKGKERRDQVQLEVRASIEEQRASQWVGLRQQGAWTRWEEAMARKISWPELWRAEPLRIRFLIQSVYDVLPSPSNLFLWGKVESPSCPLCQGRGTLEHILSSCPKALGEGRYRWRHDQVLKAIAESISSAMEYSKRLPLPGRGVRFVRAGEQPPPQPRAQPGLLATARDWQLRVDLGKQLKFPENIVETNLRPDIVLHSQSSKQVILLELTVPWEERMEEAYERKAGKYAELVEDCRRAGWRSRCLPIEVGGRGFAGKSLCKAFSLLGITGMRRRKAICAASEAAERASRWLWIQRDKPWTSASWTQAGN
>R2-1_SP_pol#LINE/R2-Hero 83-3016  [Strongylocentrotus purpuratus]
MPPYVLIGSLLLFFTFQANCLRFNVPNLRATEWQPHNAAIKDRLTLLHHDLGAGIVTPKSAADDLTSILTEYFSGQDDFVDKKLSDTYIEHEPKSLIQARKCKNVLRKRAFGKNGTAEDRKAFRAAVKTVSYLRKQDKQNKCDKSRSHMEKRYRNNFYEFSKAACSGSLNESPTKPLFSEDVANNYFGDKYSTPNVINIGSLNWFPYVNINTPDRFEFDMTPIKPKDVKNVLRRKKAMSAPGNDGLMYGMIKHLDSVHHFLATLYNKILDSGDPPESWSESKVTLIYKSGDTDKPENFRMISLTSCISKVFHQIIAERSMSYLTENNFIDKTVQKAFIDGVNGCIEHNIVLHEILSDAKCKKRSLHTTFFDLADAFGSVSHQLITSSMERYAIPTPIARYVATLYSRLNGRVRGPGWITKPFEFKRGVFQGDPLSPTIFLMCFNPVLEYLKEQQDQFGYKWGDRKIITTPYADDFNLITGNKLQHQKLMNGINDRLKSMGLTLKPRKCSSLSLTSGKPNIVDFTIGSDVISSVHGHPIKFLGSLITFSMKTSEIFEYLKGKIESTLENINKCNIRNEYKLCILTRYALPSLRYMLTVHDVHATHLKSLDIILDRYIKMWLGIPSRGANLAVVHDPDGFNIPSISDLYRTCHCLAYSRSRVKGDDVVNHALDRRLERERGWSRQTSFSLEAHEIHSKIPDSVSWNQTKTVIKKAVQDVCRENWKRVIEPLLVQGEFMKVVHMESTDVTWKSIIYNLPQSVMKFSVNAAIDSLPTNKNLYRWGKRISDTCNLCNCTGTLHHVLNNCERMLDRYTWRHNNILRIMLKHIKNTSNNSTKVYADIEGESINGGTIPPNIIRTQHKPDICHIDNKNKDIIIIELTVPFETNIDKAHQRKQDKYASLTHEITSTGWKSKLICIEIGSRGLITPQNKYRLKEILKITDSTRYPESRDEILKAVLFSSYVIFQGRREPAWQFDQYL
>Expander1_DR_pol#LINE/RTE 162-3353 [Danio rerio]
MSSTTSRTVTSPGMAQPGPHPGARPGVGARMRAPGGRVFSHGTRPGLARRSDVGPSSRRPTTCRGSRKGPVHCGTGGGRRLGPRQPDRQAQKLALGTWNVTSLGGKEPELVREVERYRLEIVGLTSTHSLGSGTQLLEKGWTFLYSGVAHGERQRAGVGLLIAPQLSRHVLEFSPVNERVASLRLRVGDRSLTVVCAYGPNTSAEYPAFLESLGGVLEGAQTEDSIVLLGDFNAHVGNDSDTWRGVIGRNGLPDLNPSGVLLLDFCANHSLSITNTMFEHKGVHQCTWHQDTLGRRSMIDFVVVSSDLRPYVLDTRVKRGAELSTDHHLVVSWIRWQGGKLDRPGRPKRIVRVLWERLAEPQVRGIFNSHLRKSFDQIPREAGDMETEWSMFSDSIVNAAVRSCGRKVCGACRGGNPRTRWWTSEVRDAVKLKKESYRAWLACRTPETADGYRRAKRAAARAVAEAKTRAWEEFGETMEEDYRSAPKRFWQTVRRLRRGKHLHIDAVYSGSGELLTSTGDVVGRWKEYFEDLLNPTDMSFIEEAETGDAGVDSPITQAEVTEVVCKLRSGKAAGVDEIHPVYLRSLDVVGLSWLTRLYNIAWRSGTVPLDWATGVVVPIFKKGDRRVCSNYRGITLLSLPGKVYARVLERRIRPMVEPRIQEEQCGFRPGRGTLDQLYTLTRVLEGSWEYAQPVHMCFVDLEKAFDRVPRGILWRVLGEYGVRGDLLRAVSSLYEQSRSLVRIAGNKSDLFPVHVGLRQGCPLSPILFIIFMDRISRRSLGLEGVRFGDHRISSLLFADDVVLLASSDMDLQHALGRFAAECDAAGMRISTSKSEAMVLHRKKVVCHLQVGGKSLPQVEEFKYLGVLFTSEGRMEREIDRRIGAAAAVMRSMYRSVVVKKELSRKAKLSIYRSIYVPTLTYGHELWVMTERTRSRIQAAEMSFLRRVAGRTLMDRVRSSDTREELGVEPLLLHIERSQLRWLGHLFRMPPGRLPREVFQACPTGRRPRGRPRTRWRDYVSRLAWERLGIPPEELEEVSGDREVWGSLLRLLPPRPGPGKAAEDE
>4049661_Msa#LINE/RTE-BovB  gi|4049661|gb|AAC97621.1|  ORF MSV061 putative LINE reverse transcriptase, similar to Caenorhabditis elegans GB:U00063 [Melanoplus sanguinipes entomopoxvirus]
MKYEFMKIKKYIMSFLIESEWQNIKSNIIKVKDKNVTKYNINNIINNIKKNDYTKQCFINELMLFLKNGLKYNKCTITEHEWVKYYKQLLYDEKLISSLPQIIDFDGLDNINIFELNILMEKCKLIQYDINLQTKLLNLFNECWKYKKIPDEWLISKIKSIHKNGDKNICNNYRGINLINWACKLYSKILNNRLKPIMENLISEEQSGFRKNRSIKDNIYILHEIIRNRKKETYFAFIDFKKAFDNVDREILWNIMHLHGYPPHLINAIKSLYENTRIIVKSKVIKINKGIKQGCAVSLSLFNIYIDHIMNEWKQHNIKGIELNDNTNLNYILYADDLVIISTNKNDFIHGIDMLNNLSKKYKLPISFEKTKVMAFKGTETINIEIYIDDNLIQQVDCFTYLGYEISYTNKINLLYKLNQFDKICNLIINSLKDKVDIKIIIHVYKILAVPIFTSRFIFYELSSEEENIITRHEMHFLKNILDFNLEDDIIRQILDVYKLVDKINESKYKWKERLSSMDYDRLPMKIVNFH
>ALINE_pol#LINE/RTE-BovB Fragment [Mammalia]
QDLIGLNIYIPPTNMHTDPSDVWNQFDSLLNFIFSKYPLADIIILGDLNARIGNGSAKASSIGNLDWKDCFPMGHFSRDNCLNQRGKYLVKLIYHHNLIMLNGSPWDKSRGNFTYISNQGASIIDYLIISPSLLISILEMNILDIESDHFPFKLNLXFNITVPESDYIYNWNGEIMGIRRLRWKGSFQFHDYFLRSKEF
>BovB_Plat_pol#LINE/RTE-BovB 197-3334  [Ornithorhynchus]
MIKMLIKDNGRDSSFHCAEGGNGKPLPYFYQENSMDTHTRTTTDIVLEDEPLRSEGTQRATGEEQTMSQSIVGVYDVAGIKPSGPPVADVAIREMSIRSCKDTLIIGTWNVRSMNQGKLEIVKNEMDRLKIDILGISELKWTGIGHFQSNEHIIYYSAHAEKRRNGVAVIVTKKIAKTVIGYNAVNDRLISVRFRGKPFNMTILQVYAPTTDAEQEEIDRFYDEVQREIDKSCKQDVLIITGDWNAKVGNGMEMKVVGKYGLGNRNQAGDRLTDFCESNDFFIANTFFIQPKRRLYTWTSPDGLYRNQIDYIICRKRWRSSILAAKTWPGADCGTDHELLMCKLRLKLRKINHALQLPKYDLTNIPPVFKDHVKNRFEALNLTDKEPEKMWTEIKNVIKEESDTVLQKVRKKKKPKWMSNITLEVARKRKEAKIRGQKNLVKELSREFQRSARKDKQEYYNSICKEMEVNNKCGRTRSLFQKIKEIKGTFRPRIGFVKSKDGLTINDASGIKQRWKEYTQELYQKDSNIQEVFEEVPFELEPLIMESEVRSALHCLAKNKAPGFDRLPIEVFQAAGEESVKVLTKLCQQVWLTTQWPSDWKRSVYVPILKKGDTTKCDNYRTVSLISHASKVLLKVIQRRMETYMERELPDVQAGFRKGRGTRDIIADVRWIIERTREYQKEVSMCFIDYSKAFDCVDHEKLWSTLRKMGMPDHLIALIRNLYDEQEATIRTEYGETDWFPISKGVRQGCILSPYLFILYTEYLMREAGLDEDERGVKIGGRNINNLRYADDTTLLAESEEDLKGLLLKVKEQSKKMGLHLNVKKTKIMTTGSFNTFVVDGEKIEIVDNFSLLGSIINNKGTSSQEIRRRLMLGRLAMKSLEKVMKCADVTIATKIQIVNSMVFPVTMYGSESWTVKKQDRKNIDSFEMWCWRRLLRIPWTARKTNKWILEQIKPKWSLEGQMTRLRLAYFGHIIRRTNSLEKTLMLGKVQGKRGRGRPAARWIETITTITEEPLERLRIMAEDRTFWRKYIHGVAMNRKRLDGT
>BovB_VA_pol#LINE/RTE-BovB  875-3901 (1 stopcodon) [Vipera ammodytes]
MDSTKRQYDMTLEDEPLRSEGIQYATGEEQRATTSSPRKNEATGPKPKGHSAVDVSGGERKVRCCKDFFSIGTWNVRSMNQGKLDVVKQEMTRLNIDILGVSELKWTGMGEFNSDDHQVYYCGQESLRRNGVAFTVNKRVEKAILGYNPQNDRMISVRIQGKPFNITVVQVYAPTTSAEEDEIDRFCEALQHLIELTPKNDVLIIMGDWNAKVGSQKITRITGKFGLGVQNEAGHRLIEFCQENTMVIANTLFQQPKRRLYTWTSPDGQYRNQIDYVLCSQRWRSSIQSVKTRPGADCGSDHELLVAKFRLKLKKVGKSTRPLRYELNHIPVEYTVEVTNRFKELDLIDRVPEELWTEVRNIVxEVATKTIPKKKKCKKAKWLSEEALQIADERREAKGKGEKEIYAQLNAEFQTIARRDKNAFLNEQCKEIEENNRIGRTRDPFKKIGEMKGTFHAKMGMIKDQNGRDLTEAEEIKKRWQNYTEELYKNELNVPDNLNEVVTDLEPDILECEVKWALEKLSNNKASGGGNIPAELFKILKDNAVKVLHSICQQIWKTQQWPQDWKRSVYIPIPKRGSAKECSNYRTIALISHASKVMLKILQARLQQYVDRELPEVQAGFRRGRGTRDQIANIRWLMEKAREFQKNIYFCFIDYAKAFDCVDHNKLWQVLKEMGVPDHLICLLRNLYAGQEATVRTGHGTTDWFKIGKGVRQGCILLPCLFNLYAEHIMRKAGLDESKVGIKIAGRNINNLRYADDTTLMAESEEELKSLLLRVKKESAKLGLKLNIKKTKIMASNPLNSWQIDGEEMEVVTDFIFLGSKITADGDCSQEIKRRTLLRRKAMANLDSTLKSRDITLSTKVRIVKAMVFPVAMYGSESWTIKKAERQRIEAFELWCWRRLLRVPWTARRSNRSVLEEINPDCSLEGQILKLKLKYFGHLMRRKDSLEKSLMLGKIEGNKRMGRQRMRVLDGVTEAVGVSLNGLQKMVEDRKAWRNIVHRVAMGRTRLRS
>BovB_pol#LINE/RTE-BovB 319-3453 RTE-9_SP in sea urchin is 95% identical [Ruminantia]
MPCGATQDGRVMVERSDRTRSTGEGNGKPLQYSCLENPMNSMKRQNDRILKEELPRSVGAQYATGDQWRNNSRKNEGMEPKQKQYPVVDVTGDRSKVRCCKEQYCIGTWNVRSMNQGKLEVVKQEMARVNVDILGISELKWTGMGEFNSDDHYIYYCGQESLRRNGVAIMVNKRVRNAVLGCNLKNDRMISVRFQGKPFNITVIQVYAPTSNAEEAEVERFYEDLQDLLELTPKKDVLFIIGDWNAKVGSQETPGVTGKFGLGIRNEAGQRLIEFCQENALVIANTLFQQHKRRLYTWTSPDGQHRNQIDYILRSQRWRSSIQSAKTRPGADCGSDHELLIAKFRLKLKKVGKTTRPFRYDLNQIPYDYTVEVRNRFKGLDLIDRVPDELWTEVRDIVQETGIKTIPMEKKCKKAKWLSGEALQIAVKRREAKSKGEKERYKHLNAEFQRIARRDKKAFLSDQCKEIEENNRMGKTRDLFKKIRDTKGTFHAKMGSIKDRNGMDLTEAEDIKKRWQEYAEELYKKDLHDQDNHDGVITHLEPDILECEVKWALESITTNKASGGDGIPVELFQILKDDAVKVLHSICQQIWKTQQWPQDWKRSVFIPIPKKGNAKECSNYRTIALISHASKVMLKILQARLQQYVNRELPDVQAGFRKGRGTRDQIANICWIMEKAREFQKNIYFCFIDYAKAFDCVDHNKLWKILKEMGIPDHLTCLLRNLYAGQEATVRTGHGTTDWFQIGKGVRQGCILSPCLFNFYAEYIMRNAGLXEAQAGIKIAGRNINNLRYADDTTLMAESEEELKSLLMKVKEESEKVGLKLNIQKTKIMASGPITSWEIDGETVETVSDFIFWGSKITADGDCSHEIKRRLLLGRKVMTNLDSILKSRDITLPTKVRLVKAMVFPVVMYGCESWTVKKAERRRIDAFELWCWRRLLRVPWTARRSNQSILKEISPGCSLEGXMLKLKLQYFGHLMRRVDSLEKTLMLGGIGGRRRRGRQRMRWLDGITDSMDVSLSELRELVMDREAWRAAIHGVAKSRTRLSD
>Expander1_Cis_pol#LINE/RTE-BovB  363-3191 [Ciona savignyi]
MKVDIIGVTETHWTTQNPTMWEQDNYVIIHSPRKDGTHRQGVAVAXRKELLSNLISYKCVSSRLMTMTIHLNKKVITFFVAYAPDSSYDDSQNEEFYNIIQSIINALPRKNEIILLGDFNASVGADKCNNWSDVMGKYGHGDMNERGLHLLQFCAINELIISNTIFKHKSGRRYTWTSPDYTFKKQIDYIIMSKNLKASIKNSRAYQSAEIGSDHSLVIANMIFRIEKEPKRVKNPKIKKYDYDKLKNGDIAKAFRKSVGSRFATLLGQTTEHEPESXYCKMTSILKDAAEREIGFKQHKTIPGLSIEVVKLCEERREAKIKLLSEPNNSLLQSIFTSLNKKVKKAVRRQKEENLHQKICEMEEAFKKNNSHKLFDCIKNLERKKPKPFFGIKDTNGVLQVEKKKVLDVWKSHFELHLNTEFPRDENALMEFNDSHPNDEEIQPITMEEVNNAIRQLKNNKAAGIDGITSELIKAGGYITSKMFVSLFNGIIKSEKMPKDWSKMIVTPIFKKGDKLDPKNYRAIALLSIPGKVFCKILMNRCMEKTEQYLSKSQFGFRSGKGTVDAIFIVRQIIEKAREHNVNLHLNFIDFKSAFDTIWREALWKIMLHVGISRKIVTLVRILYKDTTCTVQIDGQQTDFFPVNIGVKQGCIMSPMLFNIFLDYVLKEVKSLDSXFDFNDSMLIDIRYADDTTLISAVFEKLQIATSELAKACRKWGLKINPSKCAVLSAENGRIQLENDTIPNVDRFKYLGSIVPECSEDIRNRISLASQAFGRLRSNIWSSHHISRKLKIRLYRALILPIAIYGAETWSTTSSDMNSLKVFEMKCLRAILNVTRRDRIRNVDLRKILRVEETIEDVVNARRLRWFGHVARSSESSLINLSFRKDFQCKRRRGRPRKRWRENIRDLCGIPLATAERRARNRSKWREDVVRWTARGHHALCT
>Expander2_pol#LINE/RTE-BovB  162-3338 [Takifugu]
MEHXKGKPRTRPGGLPGPHPGARPGAGARWRAPGGRAYVHGARPGPARTSYVDTPVSSGPTTRRRSMKGPVQCGLGGGPRRGPWRSDPRLWKLAFGTWNVTSLAGKELELVGEVERYRLDMVGLTSTHSVGSGTQVLEGGWTLFYAGVAQGERRRAGVGFLLAPRLSSSTLGFSRSSERVASLRLRVGERVLTVVCAYAPNNSSEYPPFLEDLGRTLDSVPTGDSIVLLGDFNAHVGNDSVTWKGVIGRNGLPDQNQSGVQLLDFCASRSLAITNTMFEHKVVHRCSWHHDGLGRRSMIDFIVVSADLRPYVLDTRVKRGAELSTDHYLVVSWIRWGGKPPRGPGRPKRLVRVCWERLVEEPVRLVFNSHLRQSFDRVPGAVGDIESEWAMFRSAIVEAAVASCGCKAAGAGRGGNPRTRWWTPEVRGAVRLKKEAYRSWLVCGSPEAADRYRLAKRAAAETVAEAKTRAWEEFGEAMEEDFRSAPRRFWQTVRRLRGGRRQLAHTVLGVRGELLTSPGAIIRRWKEYFRELLNPTNTYPQGGTESGDQEVDHPISGAEVAEVVKQLPGGGAPGADEIRPGYLKALDVVGLSWLTRLCNIAWTSGAVPLDWQTGVVVPIFKSGDQRVCSNYRGITLLSLPGKVYARVLEKRIRSIVEPLIEEEQCGFRPGRGTTDQLFTLAGVLEGSWEFAQPVHMCFVDLEKAYDRVPRSILWGVLREYGVDGPLIRAVQSLYRRSRSLVRIAGCKSDSFPVRVGLRQGCPLSPVLFITFMDRISRRSRGVEGVEFGGRKISSLLFADDVVLLAPSSKGLQHMLGRFATECEAAGMRISTSKSEAMVLARKKVECLLRVGEEVLPQVEEFKYLGILFTSEGRMEREIDRRIGAASAVMRALNRSVVVKKELSQKAKLSIYRSIYVPVLTYGHQRWVMTERTRSRIQAAEMSFLRRVAGLSLRDRVRSSDIREGLGVEPLLLHIERSQLGWLGHLARMPSGRLPLEVFRTCPTGRRPRGRPRTRWRDYISRLAWERLGVPPEELMEVAGERAVWASLLKLLPPRPGSG
>Expander_pol#LINE/RTE-BovB  158-3337 [Takifugu]
MMINNIGAKFPLPGCGSPGPPPGARPGGGARWRAPGGRTSAHGVRPGAARRGNMGPPSRGLTTCRRGQGGRVHCVLGSSRRQGPWRSDSRLHKLALGTWNVTSLVGKEPELVREVEKFRLDIVGLTSTHGKGSGTSLLERGWTLYHSGVADGERRRAGVAILVAPQLSACVLEFTPVDERVASLRLRVGGRILTVVCAYGPNSSSAYPPFLESLEGVLESAPSGGSLVLLGDFNAHVGNDSVTWRGVIGKNGPPDLNPSGVLLLDFCARLRLSITNTLFRHKGVHMCTWHQDALGRRSMIDFVVVSSDLRPHVLDTRVKRGAELSTDHHLVVSWLRWWGRMPDRPGRPKRVVRVCWERLAESPVRRSFNSHLRESFDHVPGEAGDIESEWTMFRASIVEAADRCCGRKVVGACRGGNARTRWWTPAVRDAVKLKKESYRALLACGTPEAADGYRRAKRSAATAVAEAKTRAWEEFGEAMENDFRTASKRFWTTIRRLRRGKQCTVNTVYSGDGVLLTSTRDVVDRWKEYFEDLLNPTNTPSSEEVGPGDLEMGSRISGAEVAEVVKKLLGGKAPGVDEIRPESLKALDVVGLSWLTRLCNIAWTSGAVPLDWQTGVVVPLFKKGDRRVCSNYRGITLLSLPGKVYSRVLERRIRRIVEPRIQEEQCGFRPGRGTVDQLYTLSRVFEGAWEFAQPVHMCFVDLEKAFDRVPRGVLWGVLREYGVSGPLIRAVRSLYDRCQSLVRIAGSKSNSFPVRVGLRQGCPLSPILFIIFMDRISRCSHGVEGVRFGDLRISSLLFADDVVLLASSARDLQLSLDRFAAACEAAGMRISTSKSEAMVLNRKKVECLLRVKEEILPQVEEFKYLGVLFTSEGRMEREIDRRIGAASAVMRTLHRSVVVKRELSRKAKLSIYRSIFVPTLTYGHELWVMTERTRSRVQAAEMSFLRRVAGLSLRDRVRSSAIREELGVEPLLLRVERSQMRWLGHLVRMPPGRLPGEVFRACPSGRRPPGRPRTRWRDYVSRLAWERLGIPPDELEEVAGEREVWASLLRLLPPRPDPG
>GAMERA_pol#LINE/RTE-BovB  3-795 (fragment) [Oryzias latipes]
PTKEEIVSVIKSLKSNKAPGHDNLNAELFKTDTETASKILQPFFKTVWKSASIPEEWTKGVIIKIPKKGTLSECNNWRGITLLSIPSKIMAKIIINRLSEAVNATLRKEQAGFRKGRRCTEQIFALRNIIEQSAEWQQQLFVNFIDFEKAFDSVHRDSLWRILRAYGVPTHMIKLIRSFYNNYRCCVGGSDIWFEVKTGVRQGCVMSALLFNVVIDWVMRRTTEAGPTGIRWTLFSTLEDLDFADDLALISHIHRHMQDKTDRL
>JAM1_pol#LINE/RTE-BovB 387-3425 [Aedes aegypti]
LGGWCQALRASRKNTSAQERQRENTDRNNRQRPQRRKWTSDWKLGTWNCKSLNFIGSTRILSDVLKTRGFDIVALQEVCWTGALVRTFRGNHTIYQSCGNTRELGTAFIVMGDMQRRVIGWWPINERMCKLRIKGRFFNFSIINVHSPHSGSTDDDKDAFYAQLEREYDRCPSHDVKIIIGDLNAQVGQEEEFRPTIGKFSAHRLTNENGLRLIDFAASKNMAIRSTYFQHSLPYRYTWRSPQQTESQIDHVLIDGRHFSDITDVRTYRGANIDSDHYLVMVKLRPKLSVINNVRYRRPPRYNLERLKQPDVANAYAQHLEAALPDEGELDRAPLEDCWRTVKAAINDAAESVVGYVERSSRNDWFDEECQEVLEEKNAARAAMLQHGTRQNVERYRLKRKQQTRLFRDKKRRLEEVECQEMELLYRSQETRKFYQKLNTSRKGFVPRAEMCRDKDGSILTDGREVIERWKQHYDEHLNGAENTGTEGQDSEGDGYVSTADSGNQPAPTMGEVKDAIQQLKNNKAAGKDGIGAELIKMGPDRLAACLHRLIVRIWETEQLPEEWKQGVICPIYKKGDKLECENYRAITILNAAYKVLSQILFRRLSPIANEFVGSYQAGFIDGRSTTDQIFSVRQILQKCREYQVPTHHLFIDFKAAYDSIDRIELWKIMDENSFPGKLTRLIRATMDGVQNCVKISGEHSSSFESRRGLRQGDGLSCLLFNIALEGVMRRAGLNSRGTIFTRSGQFVCFADDMDIIGRKFETVADLFTRLKREATRVGLMVNASKTKYMLVGGTERDRTRLGSSVTIDGDTFEVVDEFVYLGSLLTADNNVSREIRRRIISGSRAYYGLQKKLRSRKIHPRTKCTMYKTLIRPVVLYGHEAWTMLEEDLQALGVFERRVLRTIFGGVQENGVWRRRMNHELAQLYGEPSIVKVAKAGRIRWAGHVARMPDNNPVKMVFATNPVGTRRRGAQRARWIDQVHQDLESVGHSRGWREAAMNRGNWRNIVGEALSR
>NAVIRTE1_pol#LINE/RTE-BovB 959-4166 via tfasty with Expander_pol, 3 frameshifts and 2 stopcodons.  [Nasonia vitripennis]
NRNFFGERKGQERKKRGEQRNLRIINWNVAGIKxVDERTWGYLKGFDVICLQETWLEDKEGNFWEKKLGGYEVRIRNAKKGGERGRVKGGIVMAVRQGTKTERIEWIEEKTNEFIGARILGRRDIWWIGTAYMREEKQENFKEIEGMTENARGEKLIWCGDMNARTGxEGGGVDEEENEENRESKDEKINREGEELLEKTREMGHSILNGNTEGDKTGEYTYIGGAGCSVIDYVITNEQGKREVQRNRVELGKTLGKTDEEKDKITERAIWTEKAIGQFREELNKGEEETEWTELKRKLEKAIRRKKGSGRKRKKNTWWDEKCRLRKQRYRKLGKAIKKGAGRKEYVKAKRDWGILVERKKQEEMEKRIKEAGDSKTGRKFWEVVKSRRRKKRTRCSSKIKKEEWLTHFKGQLGEETEEDLGTSTQGEDEEGEREDKEERITENEVRKAIRKMKKGKAPGADGLQNEVWIHGEEQVIGEITKILNNIWKGGKVPEEWKTGLITPLFKKGKKEEAKNYRGITLMDTGYKLYAEIIREKMERELEGREMLDDTQMGFRKGRGTADAIYILSKAIETELDKKGGKVYAFFADMRAAFDKVNRREMWEMMEKLGLGVRIRNRVKELYRGTRSEIRIGEDKIGGFELHKGVRQGCPLSPTLFNVAMADTEKELSKVQEGGIVLGKKKFWSISYADDVVMVANNATGLKQMLKKFKKIIERKGLELNTEKSKIMVFKNGGRRKKEDSFFWEKKEIEVVKNFEYLGYMLKENGKEEAQIKKLKEKASTVMSSMWGLGEELFRDNWELRMRLFDTMVKSVMEYGAEVWGWKGKEELEKIQRKYMKWVMKLDRTTPEHVLHLETKRYKLETRTRRRAIKYEVKLSKAKEGTLWRECWRTLEKEEEKERRRGKRRSNREEELNKRGWALSEYHRRLRAGEQVWSELERIEKDIQWQKWESEMRDSRQARDVKELIKPQGETPEYLRRTGNTGKKGLAMTARFRMGNEARGYKYWMKEEERICRLCREEEETFEYIFSRCNRTGSRENNWKNILNGERKNLAKLYRVIWVRKEKEKEEE
>ORTE-6_AAe#LINE/RTE-BovB 247-4797 [Aedes aegypti]
MIKVGGGEVLNENVNELKQIIFXYIKLNWENFVYELILSXRIXISKEETLMYEQYEWSIKGGKQVFGYEVLWAVAEIFECTVNIFFEAGGKIIYGSKYRENHISLDFVINNEGKIENIIDTDEHMRFVYTSNKQGQNVRSEVEREIGKLKEXQGSRAYTFEIATRDEILEVKQIGHDDVSLMRALEVQLNAEQDGXSEKVREELDELFRGSKIQGEDFNQVENILARLGVVASNLNKEIIIYREKKXEIVLGVTERKSKMKECKLLLTEREGKIHIDIISKCSEVTRIDWNNVVEDLALDTXVRKPREEIYQFEHPQKEGKMEVKIIQGDGNCMLRSLLDQLGRRYGRYLLSXHNVYKLRKFMVDYIQQAREQFEGFMFDYKQPEEDFEIGISNMRKNKTWLGHEALLALTEILKIAIIVYGKDGAINTIGENYSSNGSLQIFYTGVDVQNHYDSIITKNDEIAGNTRHTQRFHNENDKSYDLNDVAVKIDQMAEMREQVNPNHGTDNSEKEQASNRRKTENSHLPTSQVTNANNTNNTDVKGHNTRKVSNKFIRIASWNVKGCRSKEKREEIDETLTAYNVDIAALQEVNTLGDEVNTKNYVWKVADNHVNKSRGLAIVIRNNTNITIQNMKQVRQGILWCKIKAKDNVFIIINIHAPNVKQAAFLSKLNEITANEKDRKHLLVVGDFNAQLGINDMNQEDEKWIGKMIGHDKCNDNGETFKIFLHTAKLKNVSSKIGMGTEITWRSGSRCSQIDHILSPTMTDFKIKYIRGNWTHLNTDHKLITIGIKFEKIVRNTNERNEPTKINLELLKDNKIKEEYQEQLKLNKSQKEIEENTIEECYKELSSRMKRAANKTIRSSTIPSTPKRRKAFDRLKDAIRISKKHPDMINYKYKLKNRRQEFTQAVKDHKEKEIKHFFKNLNDFDVGQRIRKTHNYLKRYVKQKQKRIVNISTRVWDQMLRESEGPTIEFCDTHDYTPMIQPPTSEEIMDIIRNSSNGKAAGPDLIFTEYIKNADKETQDYLVKVIQKAYIENIYPSDWLKSTQIPIPKKVKATEAEHFRRISLCSVVYKVYAKWIANQITKYAGQPDLYQAAFTNNRSTDDHIFVTRRVMEENWNAGKDLYILALDIRKAFDTIKVHNIKDILLGLNVPTTLVDRVIACMKDEMTRVLWNGQFSEEIKRGKGIKQGCPLSPILFNYIMQDVIRKVASKIPELKLMDVNSLIIPLLLAFADDLLIIADSKEQLEKIVKELVKQLEEVGLELNYDKCQLLLRFPNYKGQMPNEIMLNGRPYKVCDSIKYLGVCLTATLDRKATNRQRCVNAYRTGRSVIEFCKSFKPSWELGKLIYKTVLAPAITYGTKVAVLTKKSRIGMANYEKLILRSIYNHCRRPQNIRFNARKLLDGKTINRRVRVGRISYYGHILRREKNHPIRLAYRLNFKKKKEGRPSFTWKDSLEKDLNRYSEVDREEWKQLAEDRDKLKKKAEEIYKETFSEISEGESSEEEGRSKKYKHWKRKMKR
>Perere-3_pol#LINE/RTE-BovB 218-3193 gi|67625701|tpe|CAJ00236.1| TPA: endonuclease-reverse transcriptase [Schistosoma mansoni]
MRPMHLLTTRAKIFIGTWNVRTMWETGRVFQISAEMRKYNLEVLGISETHWTQVGQQRLSSGELLLYSGHEEENAPHTQGVALMLSRKAQNALIGWESHGPRIIKASFKTKREGITMNIIQCYAPTNDYDEDAKNQFYDRLQSIFEKCPTKDLTILMGDFNAKVGKDNTGYEDVMGQHGLGGRNENGDRFANLCAFNKLVIGGTIFPHRNIHKATWISPDHTTQNQIDHVCINKKFRRTMEDVRTRRGADIASDHHLLVAKMKLKLKKHWTMARTTSQKFNMAFLRDADKLNEFNIALSNRFEAFHDLLNGEGTTIESSWKGTKEAIVSTCQEVLGQKKHHHKEWITVGTLDKIEARRNKKAAINISRTRAEKAKAQAEYTEANKQVKRSIRTDKRKYVEDLAMTAEKAAREGNMRQLYDTTKKLAGNYRQPERPVKNKEGKVITDIEEQRNRWVEHFKELLNRPAPLNPPNIEAAPTDLPIDIGPPTIEEISMAIRQIKSGKAAGPDNIPAEALKANVAATAKILHILFSKIWDEEQVPKDWKKGLLIKIPKKGDLSKCDNYRGITLLSIPGKVFNRVLLNRMKDSVDAQLRDQQAGFRKDRSCTDQIATLRIIVEQSIEWNSSLYINFIDYEKAFDSVDRTTLWKLLRHYGVPEKIVNIIRNSYDGLNCQIVHGGQLTDSFEVKTGVRQGCLLSPFLFLLVIDWIMKTSTSGGMHGIQWTGRMQLDDLDFADDLALLSQTQQQMQEKTTSVAAASAAVGLNINKGKSKTLRYNTICTNPITLDGEALEDVEIFTYLGSIIDEHGGSDADVRARIGKARAAYLQLKNIWSSKQLSTNTKVRIFNTNVKTVLLYGAETWRTTKAIIQKIQVFINSCLRKILRIRWPDTISNKLLWETTNQIPAEEEIRKKRWKWIWHTLRKSPNCVTRQALTWNPERQRRRGRPKNTLRREIETDMRRMNKNWKELEKKAQDRVGWRKLVGGPCSIESYRRK
>REX3_XM_pol#LINE/RTE-BovB  5-2167 via tfasty with Expander_pol, 2 frameshifts and 2 stopcodons.  [Xiphophorus maculatus]
LGRSLMIDFVIVSSYLRPYVLDTRVKRGAELSTDHYLVVSWLRWWGRMESEWTVFRASIVEAADWSCGRKVVSACRSGNPRTHxxTSSVRDAVRLKKESYRVFLACGTPEAADGYQWAKWHATRVVAEAKTRAWEEFGEAMEKDFRTASRRFWSAIRCLRGGKQYGTNTVYSADGVLLTSTQDIVGQWAEYFEDLLNPTNMPSIEEAEPGDSGLGSPISGDEVAEVVKKFLGGKAPGVDEIRPEFLKALDVVGLCWLTRLCNIAWTSMAVPLDWQTGVVVPLFKKGDWRVCSNYRGVTLLSLPGKVYSGVLERRVRRIVEPRIQEEQCGFCPGRGTLDQLYTLGRVLEGAWEFAQPVYMCFVDLEKAFDRVPRGALWGVLREYGVPGTLIRSVRSLYDRCQRLVRIAGNKSGSFPVRIGLRQGCPLSPILFITFMDRISRRSQGVEGIRFGGIRLSSLLFADDVILLASSGHDLQLSLEWFAAECEAAGMRIRASKSEATVLSRKRVECLLRVRGGVLPQVEEFKYLGILFTNGGRRELEIDKRIGAASAVKWALYQSVVVKRKLSQKAKLSIYWSIYVPTLIYGHELWVVTERTRSRIQAAEMGFLRRVSGLSLRDRVRSSVIREGLRVEPLLLHFERSQLRWLGHLVRMSPGRLLVEMFRACPIGRRPRERPRTGWRDYVSRLAWEHLGIPPEELEEVAGSREVWASHLKLLPPRPDPG
>RTE1X_SP_pol#LINE/RTE-BovB 626-3298 [Strongylocentrotus purpuratus]
MCPIHSLFLLTWLERRVQWVHHYSGKKDQMKIGTWNVRTLMDTQNSNRPERRTAFVARELRQHDIDIAALQETRLAGDGQLTETAGGYTFFWKGKSMGEPRIHGVGFAIKNEIMRTMDQVPLGINERLMTLQMNLSKGRKATLISAYAPTLMAEAEEKESSYSSLDTLLTQIPRSHKLLLLGDFNARVGKDSTIWNGVLGKEGIGNVNDNGHRLLTKCAEHRLTITNTLFRQKNRQKTSWRHPRSGHWHMIDYIIVRQDDKKDVNITRAITASDACWTDHRLIRSVMAISLQPKHRKTKKNRAGYNLRSLEQPSVQEAFKVSMEKSIQERNPSINDDVEKYWNDLKDAIVKSCKETLGKPERYHEDWFDENDKEITKLISDKRSAFTTWQNDIRNANKRAAYHSLRSLIQCRVRELKNQWWLKKAEELQKLADENKSRDFFTATRKVYGPTVNGVRPVLGKDGSLLKDKDKIRERWKEHFSDLLNQPSSVETTIIDNFPQSTTLDNLSDAPTIDEVTSAVKAMKNGKAAGLDGIPAEVYKLAGSELHRKLHNLYKLIWEQETVPSELRDALIVTIFKKGDKSSCDNYRGISLLSVAGKILARILSQRLSIVAEEVLPESQCGFRPGRGTIDMIFSIRQIQEKCREHHQDLYMAFIDLTKAFDSVDRQTLWKILTHVGCPEKFVKIIRSLYEDMNASVLVAGEASESFAVQTGVKQGCVIAPSLFSLFVSSVLQLVNQRQPPGINLRYRIDGQLFNLRRLKAISRTTDVTVNELQYADDNAIVASSEEDLQAAMDAFSYAYSVFGLKLNTRKTQILYQPKPGITHEQQCPPCIKVDGQPLTNVERFTYLGSCLSSKVDIYDEIQQRLSASSSAFGRYSHSFTQIYANLTLTL
>RTE1_LA#LINE/RTE-BovB 354-3218 via tfasty with BovB_pol, 3 stopcodons.  [Loxodonta africana]
MWHDSMRRNSCKHPLIIGTWNVRSMNLGKLEIIKNEMEHININILGISELKWTGIGHFESDNHIVYYAGNDNSKRNGVAFIVKKNVSRSILKYNAVSDRIISICLQGRPVNTTIIQIYAPTTKAKDEEIEDFYQLLQSEIDQTCNQDALIITGDWNVKVGNKEEGSVVGKYGLGDRNNAGDRMIEFCKTNDFFIANTFFHQHKRRLYTWTSPDGTHRNQIDYICGKRRWKSSISSVRTRPGADCGTDHQLLICKFKLKLKKIRASPREPKYDLEYIPPEFRDHLKNRFDALNTSDQRPDELWNDIKDIIHEESKRSLKRQERKKRPRWMSEETLKLALERRAAKAKGRIDEVKELNRRFQRAAxEDKVKYYNDMCKELEMENQKERTRSVFLKLKELKKKFKPRVAIVKDSMGKILNDAGSIKRRWKEYTESLYQKELVDVQPFQEVAYDQEPMVLKEEVQAALKALAKNKAPGIDGISIEMFQQTDAALEVLTHLCQEIWKTASWPTDWKRSIFMPIPKKGDPTECGNYRTISLISHTSKILLKIIQKWLQQYIDRELPEIQAGFRRGCGTRDIIADVRWILAESREYQKDVYLCFIDYAKAFDCVDHNKLWITLxRMGIPEHLIVLMRNLYIDQEAVVWTEQGDTDWFKVRKGVRQGCILSPYLFNLYAEQIIxEAGLYEEERGIRIGGRLINNLCYADDTTLLAESEEDLKHLLMKIKDHSLQYGLHLNIKKTKILTTGPMSNIMINREKIEVVKDFILLGSTINSHGSSSQEIKRRIALGKSAAKDLFKVLKSKDVTLKTKVRLTQAMVFSIASYACESWTMNKEDRRRIDAFELWCWRRILNIPWTAKRTNKSVLEEVQPECSLEARMARLRLTYFGHVVRRDQSLEKDIMLGRVQGQRKRGRPSMRWIDTVAATMSSSITTIVRMAQDRAVFRSVVHRVAMSRNQLNGT
>RTE1_MT_pol#LINE/RTE-BovB 273-3057 via tfasty with Expander_pol, 2 frameshifts and 1 stopcodon [Medicago truncatula]
NRIRFGTxNIGTLTGKSMEVVDTMTRRKINFMCLQETKRVGKKAKELDSSGFKLWYTGEVRSRNGVGIFVDKEWKKDIVDVKRIGDRIIALKIVVEQDTFNVISAYAPQVGLEAHLKVKFWEELEGLIQDIPLGGKIFLGGDLNGHVGSVSRGFEGLHGGYGLGEINAEGKSILDVSSAFDLTIANTCFRKREEHLITFKSGVSCSHVDFVLIRKSDRKICLDCKVIPGESLTTQHRVMVMDVRVKRRAKRRSQNGAPRIKWWHLKGEKLRIFQHKILEGGFRQPHGSANDMWERMAHEIKKVAKETLGESRGFGPRGKESWWWNDSVQSKVRIKRDCFKDWSRCKNVETWDKYKIARKEAKKAVSEARTQAFEGLYQSLGTKEGEKSIYKLAKGRERKTRDLDQVKCIKDEEGRVLVQERDIKGRWKKYFHNLFNEGYEILPDSNRLDIGEEDRNYNYYRRIQEHEVREALKRMSSGKAVGPDNIPIEVWKSLGDRGIVWLTNLFNEIMRTKKMSDEWRRSTLIPIYKNKGDIQNCANYRGIKLMSHTMKLWERVIERRLRKETRVTDNQFGFMPGRSTMEAIYLLRRVMERYRTDKKDLHLVFIDLEKAYDRVPREILWKALEKKGVRIAYIRAIKDMYEGASTSVRTQDGTTEDFPITIGLHQGSTLSPYLFTLVLDVLTEHIQELAPRCMLFADDVVLVGESREEVNGRLETWRQALEAYGFRLSRSKTEYMECNFSGRRSRSTLEVKVGDHIIPQVTRFKYLGSFVQNDGEIEADVSHRIQAGWLKWRRASGVLCDKKVPLKLKGKFYRTAVRPALLYGTECWAVKSQHENQVSVAEMRMLRWMSGKTRHDRIRNDTIRERVGVAPIVEKLVENRLRWFGHVERRPVDAVVRRVDQMEESQVKRGRGRPRKTIRETIRKGFRGQ
>RTE1_Pca_pol#LINE/RTE-BovB 227-3250 91% identical to RTE1_LA_pol [Procavia capensis]
MNSSRTLSDMVPESEPPRLEGTRKTTGEELPPQSRVDLNDVDGVRPPGSSFADVARLKMRRNSCKHPLIIGTWNVRSMNLGKLEIVKNEMERINIDILGISELKWTGFGHFESDNHMVYYAGNENLKRNGVAFIIKKNISRSVLKYNAVSDRIISIRLQGRPVNTTIIQIYAPTTKAKDEEVEDFYQLLQSEIDRTCNQDALIITGDWNAKVGNKEGSVVGKYGLGDRNNAGDRMIEFCKTNDFFIANTFFNQHKRRLYTWTSPDGIHRNQIDYICGKRRWKSSISAVRTRPGADCGTDHQLLICKFKLKLKKIRTSPREPKYDLEYIPPEFKDRLKNRFDVLITNDRRPDELWNDIKDIIHEESKRSLKRQERKKRPNWMSEETLKLALERRAAKAKGRNGEVKDLNRRFQRAAREDKRKYYNDMCKELEMENQKGRTRSAFLKLKELKKKFKPRVAIVKDSTGKLLNDSESIKRRWKEYTESLYQKELVDVQPFEEVAYDQEPMVLKEEVEAALKALAKNKAPGIDGISTEIFQQTDAALEVLTRLCQEIWRTATWPTDWKRSIFMPIPKKGDPTECGNYRTISLISHASKILLKIIQKRLQQYIDKELPEIQAGFRRGRGTRDIIADVRWILAESKEYQQDVYLCFIDYAKAFDCVDHTKLWLTLRRMGIPEHLIVLLRNLYMDQEAVVRTEQGDTAWFKVRKGVRQGCILSPYLFNLYAEQIIREAGLYEEERGIRIGGRLINNLRYADDTTLLAGNEEDLRHLLMKIKDHSLQYGLHLNIRKTKILTTGPVSNIVINGERIEVVKDFILLGSTINALGSSSQEIKRRIALGKSAAKDLFKVFKSKDVTLKTKTRLTQAMVFSIASYACESWTMNKEDRRRIDAFELWCWRRMLNVPWTAKRTNRSVLEEVQPECSLEAKMARLRLTYFGHVVRKDQSLEKDIMLGRVEGQRKRGRPSTRRIDTVAATMGLSIKTIVDMAQDRAVFRSVVHRVAMSRNRLDGT
>RTE1_Plat_pol#LINE/RTE-BovB 860-3769 [Ornithorhynchus]
MTLRLPLKQKRFATIISAYAPTMTNCDEEKERFYKDLDKLIAGVPTSDKLIVMGDFNARVGSDAHTWKKVIGPHGIGKLNSNGLLLLSECAKHHLAITNTIFRLPNKRKTSWMHPRSKQWHLIDYIIARQRDLKDVRITAAVRGAECWTDHRLIRSKLTLXXEPLRRKVASKPPRQLNVKLLENEDIRKELRSNITAALLKQEXQTTIPNVXSEWAFLRDAVFQAAVETLGTAKRSHQDWFDANDSEIKGLLAAKHLLHQQHLAAPENSDKSEAFRNLRRDMQIKLRNMRDRWWDAKAEEIQGYADRHETKNFYTSLKTLYGPVRAITVPLKSEDGSSLITDKEGILKRRQXHFNVLLNTPSTIEDEALQNIENLPTCEDMALVPTIGEVTAAVRAMKNGKAPGPDGIPAEIYKHGGDTLLKHLHKLFLNIWTTEEMPQDLKDATIITIFKKKGERSDCGNYRGISLLSIAGKILARVLLDRLLKNIVDRTLPESQCGFRPQRGTADVIFAARQIQEKCREQHQDLYTVFIDLTKAFDTISRSGLWKLLSKFGCPEKFIKILRLLHDGVAGRVRAEGALSDPFPVANGVKQGCVVGPVLFNLFYAAMLEDATRDLDAGVRIRFRTSGKLFQLNRLRASSKVLETVIQELLYADDCALEAHTQEDTQMIVNRFAESARRYGLTISLKKTEVMYQPAPGKPYTQPKIYIGNTELNAVTEFCYLGSTLTNDATIDKEVENRIKKASTSFGRLSNRVWRQRGIRLQTKLKVYRAVVLSNLLYGCETWTPHRRHIRLLEQFHQRHLRAILNIKWQDKITNNEVLERSQSPSIEAMLTSTQLRWVGHVRRMSDSRIPKQLLYGELKLGNRKQGGQRKRFKDTVKQSLRQCCIPAENWESIAEDRPAWRTAIKKGAALFEQKLRKERETRRQKRKQRQALQTSNTTTQQGTAFLCAQCGRDCGSRIGLFSHTRTHR
>RTE-1_AG_pol#LINE/RTE-BovB  373-3291 [Anopheles genus]
MGSWNVRTLSEAGALKKLDDALATLSMDLVALQEIRWLGNGVHNRRGKHCYDIYYSCHDRHRVLGTGFAVGPRLKPAIMDFKAINDRLCTLRMRGKFFNISLINVHAPTEDKEEEEKDLFYGRLARIVDACPRHDLIIILGDFNAKVGREPMYRQYTGCHSLHEHSNDNGSRLVQFAAANNLVVGSTKFARKKIHKITWAHPGGESFNQIDHVLISRRRQSSLLNVRTYRGANIDSDHYLVGLVIRCRIARPRANGGGENTQARLNTDSLRDIAVQQEFKTALEESLLPEDRYETTSERWNALKTKIINCARNILPPRRGNTKSGWFDDECRQVTERKNTAYRAMQQRHRTRACAEEYSRLRREEKRVHRSKKHALEEQNMRELEQTREAYGPTRKFYQAIAGHRNNVVPKVTCCRNKDGDLVSNQPEVLSRWAQYFDELLNDQFSEQLEAPLADNVMLLPPSIEETRKAIRRLKNNKAPGTDGIAAELVKNGGARLENEIHQIVTEVWDSESMPCDWNLGIIYPIYKKGDRLDCNNYRGITVLNTAYKIFSLILQDRLVPHVEEIVGNYQRGFRNGKSTTDQIFTMRQILEKMAEYKNDTYHLFIDFKAAYDSIARVKLYDAMSSFGIPAKLIRLVRMTMTNVTCQVRVDGKLSGPFATTKGLRQGDGLACLLFNLALERAIRDSRVETTGTIFYKSTQILAYADDIDIIGLRLSYVAEAYQGIEQAAENLGLQINEAKTKLMVATSADLPINNPNLRRRDVQIGERTFEVVPEFTYLGSKVSNDNSMEVELRARMLAANRSFYSLKKQFTSKNLSRRTKLGLYSTYIVPVLTYASETWTLSKSDEALLAAFERKMLRRILGPVCVEGQWRSRYNDELYEMYGDLTVVQRIKLARLRWAGHVVRMETDDPARKVFLGRPQGQRRRGRPKLRWQDGVEASAIKAGITDWQTKARDRERFRTLLRQAKTAKRL
>RTE-1_BF_pol#LINE/RTE-BovB 1-1728 fragment [Branchiostoma floridae]
TLDEVSPVYGPPPKIDRARTTKAINAMKKGKAAGPSGIVAEMIQAGGDFMADQIASLTNAIIKEEKIPNDWNLSYIINCYKGKGDSMERGNYRGLKLLDQVLKVVERVLEPMIREQVHIDSMQFGFMSGRGTTDAIFILRQLQEKFLSKRKDLYLMFVDLEKAFDRVPREVLWWAMRKLGVQEWLVRTVQSMYCHARSSVRVNGKYSPEFDVKVGVHQGSVLSPLLFIIVMEAISRDFRVGCPWELLYADDLGLAAETLTLLSQRFSPWKNNLSSHGLRVNTGKTMVVHCKYNDSRPSKETGKFPCGVCHKGVGDNSIFCTQCKHWIHKRCTKIKGKLKEDPNFICHSCSNQAPTPPEPPLMEATVSGDTFKVVPIFCYLGDTIGQSGGCADAVTARIRSAWKSFHELLPILTNRNIPFRNRGHVYSSCVRSAMLYASETWALSAEDVRRLVRCDNAMTRWICSRRLAERVPSEQLRCRLGLHSIHDILRYNRLRWYGHVQRMSHDSWPRKVLNLSVVGQNPRGRPKRRWVDNVKEDLRKLQKANPLDRDGWRAAIRPKRLDDTSNLCKTGKNGR
>RTE-1_BM_pol#LINE/RTE-BovB 3-2086 via tfasty with BovB_VA_pol, 1 frameshift. [Bombyx mori]
AQRRIEVTDRAKFTAAFERKWTEWTDVNHNEATPEMLWSKAKHLIQNAVIESKPISEMRKRQHWMTDEYLALIEERRRKKAQGIDTNKLNVLSANIQASCRRDHNSHLRNICEEVEKHATKHESRDLYHKIRFITKSLPSKTWAIVNDKNELITELDQISETWKSYCQSLFQDPQSRQFTSTDPNDEDLEPSILLSEVRAAIKHLKNGKATGRDAIPIETIKALGERGDDMFHKICNRVWQTGVWPSEWAHTVFTPLHKKGSTKKCNNYRLIALTSHSSKIMLRILNERLKTYLSKEIAPEQAGFVRGKGTREQIFIVRQIIEKAREFNRPTYICFVDFSKAFDSVKWPVLWKTLLDLGTPKHLVHLLRRLYENGTASVRADDVLSGNFHPSAGVRQGCIVSPLLFNAYTEIIMRITLENWTDGVAIGGYRIANLRYADDTTLFATDAQCLGELLSRMERVSLEFGLRINRSKTKVMIVDRAMNNSPDVTQIAGCDVVQSYIYLGALISNNGGCVDEIRRRMAVTRSAMDGLRKVWRNRNITKTTKIRLVRTLIFSIFLYAAETWTVRDVERKKIDALEMWCWRRMLGVSWTDFRTNVSILQELGIKQRLFGIVQSRMVNFFGHVSRRDGRSIERLVVQGSVDGTRPRGRPPMRWTDQIKTAVGGPLNECSRMASSRERWRDIVRRIKSAPSNTT
>RTE-1_CQ_pol#LINE/RTE-BovB 25-3042  [Culex quinquefasciatus]
MEPESGLRATETARRKTDWRNGTTLGMKTRTRIGTWNVLTLAQAGKLETLGREAVRLKLEILGLSEVRWPDSAEHKMPTGQVLLYSGLRSENAQRGFLLSPNARSALITWKPINERIIVARFRTRVRNLTFVQVYAPTDAADLQEKEEFYSQLSXVVNEIPKGDIRIYAGDFNAKIGSDNTDLERIMGPHGXGEMSENGELFTEFCGNQDMVIGGSLFPHRSVHKVTWVSRDGKTENQIDHICISRKWRRSLLDVRNMRSADIASDHHLVVGEIRLRVARVVRQEEKVGCRFNVQRLSNPEVXRAFVGELQARALEIPDSTVEEEWQFIKDAFAVTGENTLGMLRTQRKEWISDATWDKIEERKQAKAAIVSARTRATKARTRQTYAELEKAVKRSCRRDKRAWTDSLADEGEKAANNGDMRLLYDISRRLCGARTNTRIPVKDRSGQLITDPADQLKRWFEHFEQLLQISHPRPSPQYHPQNVRRINRVNSSPPTLREIEEAVKGMKSGKAPGIDRISAEMLKADAHLSARMLHRLFSKIWDTATFPVDWMQGILVKVPKKGDLTNCDNWRGITLLCIALKVLCKVILCRIKSKIDESLRRQQAGFRSGRSCVDHIVTLRVILEQVNEFQDSLHLVFVDYEKAFDRLDHENLWEALGRKGVPERIINLIKAQYEAFVCRVVHNGVLSDPIRVVAGVRQGCILSPLLFLIVIDEVLAGALDRVQNRGLLWQPIRMEHLNDLDFADDIVLFSQRGNDMQNKLDDLAACSSAAGLKVNVSKTKSMAVNTERAQGFTVAGENVEKVDTFQYLGSQIAPDGGTKLDISTRIKKARSAFAGLRTLWRSNQISLRTKLRIFNSNVKSVLLYGSETWCVSSQNTSKLQVFVNRCLRNILRAWWPRNWVSNAELHRRCQQRPIHVEIRERKWRWIGHTLRKDAHEICREALDWNPQGQRGRGRPRGSWRRSLHQEISAVDGTLSWRQVKAKAENRQQWKSFNAALCSTGEQXA
>RTE-1_DR_pol#LINE/RTE-BovB  592-4037 via tfasty with Expander_pol, 1 frameshift. [Danio rerio]
NTGSSSLPVISHSSVGVEQGARDCSRRWEGSSGPTGQLPPASSWAAPSQLGTAPPQSAFLIGCMGNRSISNSRLQPSRPDNKITQRKRPALKLGCWNVRTMLTGLSEDLRGIDDSRKTAVINNELLRLNVDIAALQETRLADSGTLKEKDYTFYWQGRAPDEPRQHGVAFAVKNNLLSMVEPGRNGTERLLTLRLNTTTGPLTLVSVYAPTLNATLETKDKFYGNLTSVINNIPDKEQLVLLGDFNARVGANHESWPSCLGKFGIGKMNENGQRLLELCAFHNLCIANSYFQTKPQHKVSWRHPRSKHWHQLDLILVRRSAINCVLHVRSYHSADCDTDHSLVCCKIRLNPKRFHRLRKQGNPRINVSRMSQPDLTQKFAETLVKELDTAQTGDSALEMWESLRNTMQRTALATFGKRTTKTHDWFEAKASTMIPCIEAKRAALTEYKRSPTQKNLQILRSTRSKAQHIARYCANEYWQELSNDIQKAAIAGNIRGMYDGIKKALGPTQCKTAPLKSSTGEIISDKQQQMERWVEHYSDLYSRQNTVSSAALDVIKCLPTMEELDEEPTAEELRKAIDKLASGKAPGSDGIPPDLLKQCKDSLLHPLHKALCQCWKEGAVPQDMRDAKIITLYKNKGERSDCNNYRGISLLSIVGKVFAKVILARLQKLAERVYPESQCGFRAERSTVDMIFSLRQLQEKCREQQMPLYISFIDLTKAFDLVSRDGLFKILPKIGCPPKLQSLIESFHTDMKGTIQFNGSCSEPFSISSGVKQGCVLAPTLFGIFFALLLRHAFGSATEGIYLRTRSDGKLFNLSRLKAKTKVRETLIRDMLFADDAAVTTHTQEELQSLMTRFSMACKDFGLTISLKKTNVLSQDTATPPTITVDDYQLDVVHQFTYLGSTITDNLSLDAELDRRIGKAASTLARLTTRVWTNHRLTTATKMAVYNACVISTLLYGSETWTTYARQERRLNTFHLRGLRRILGITWQDKVSNVKVLTRAGLPSMYTMLRQRRLRWLGHVCRMEDGRIPKDILYGELSSGKRTTGRPFLRFKDVVKRDMKALDINTKSWEDLAADRLKWRCTLTKQLKSGEKNMMRASEDKRVHRKVQSVSQGATYQCDCCGKKCLSRIGLFSHQRRCLRQSVMPQYKS
>RTE-1_DYa_pol#LINE/RTE-BovB 8-2342 via tfasty with RTE-1_CQ_pol, 2 frameshifts and 2 stopcodons. [Drosophila yakuba]
SARRGKVTLTSYCXYSHTSTTWTSPSFDHICISRKWRHSLLDVRNKRGASIDSDHELVIGELEIKLNRILLKEHxxQPTPTSAPLNLHLLSDSTLRTRMTSTLREQLIPLEDHPWEHTCRQLRTAAEQIIGLQQRGRADWISEGTWDLIRRRNNLKPLADQLTQNRDEYRELCRAVKRAARKDKRALLDRLATDAERAAGENNMRSLYQQIARIAGTHHRRNQPVRDLEGNLLSNDDAQIRRWRQHFMGISHTTSPNVATDYRSIAPPSGNTRIPSTPPHVREIVNAIKKLKRNRAAGEDNIPAELLQVDTQLMADTLHPHFARIWEGETVPDSWKSGIIVKLPKKGDLSDCNNWRGITLLNTSYKILATLLNERLQEKIEPTIRDEQAGFRPHRSCVDQANTLRIITEQAVEWRAPLYLLFIDFKKAFDSVERAAIWRSLARKGVPANLIAIIKSMYDDANLAVLHNGITSEPFQTNTGIRQGCPLSPLLFNIVVDELMSEVCSSKRGITWSLTRHLEDLDYADDICLISHRLGDIQRKSDNLVRIASSVGLEINVAKTKAMRFNHSNQGNIIIHGNPIEFVNSFPYLGTIISNNGGVDDDVSSRLGKARSAFGRLYRIWRNREISRRTKLRIYNACVKSILLYGSETWLATKKVTQKLQVFSNKCLRIICGIFWPNRIANTELWRVTSEPPIHTQIRKKKWMWIGHALRRNPSSIVRMALDWNPQGSRRVGRPRATWRRTAQQELAQINITWENAKQTAQNRVRWKALVEALSSREE
>RTE-1_GA_pol#LINE/RTE-BovB 139-3339  [Gasterosteus aculeatus]
MKKRKREGVTRPGGSPGPPFGARPRWRARQRASGGRVYRGARPGTARRSDAAAQHSTPHGLTTCGGNRWGRVRCYKGGSDSGGSRRNRPGRQMLALGTWNVTSLGGKEPELVREVERYQLDLVGLTSTHSLGSGTKLLDRGWTLFYSGVAHGVRRQAGVGILISPRLSAATLEFTPVDKRVASLRLRVVGGKTLTVVCAYAPNSSSEYSAFLETLNGVLHGAPVGDSIVLLGDFNAHVGDDGDNWRGVIGRNGLPDLNPSGCLLLDFCASHGLSITNTMFEHKDVHKCTWYQSTLGQRSMIDFVIVSSDLRPHVLDTRVKRGAELSTDHHLVVSWVRGWGKTRDRPGKPKRVVRVNWERLEEAPVQKIFNSHLRRSFSHIPVEVGDIEPEWSMFKTSIAEAAAVSCGLKVLGASRGGNPRTPWWTPVVREAVRLKKEAFRVMISGGTPEAVAVYRQARRAAASAVMEAKQRVWEEFGVTMEKDFRSAPKCFWKTIRHLRRGKRGTIQAVYSKDGTLLTATEEVIGRWKEHFEELLNPTTTPSLVEAELEAEEGSSSISLVEVTEVVKQLRSGKAPGIDEIRPEMLKAMGVGGLSWMTRLFNIAWKSGTVPKEWQIGVVVPLFKKGDQRVCANYRGITLLSLPGKVYSKVLERRVRPIVEPRIEEEQCGFRPGRGTTDQLFTLSRIIEGAWEYAQPVYMCFVDLEKAYDRVPREILWEVLREYGVRGSLLGAIQSLYAQSESCVRVLGSKSKAFPVGVGLRQGCALSPILFVVFMDRISRRSRGEEGLQFGGLRISSLLFADDVVLMASSVCDLQLSLERFAVECEAVGMRISTSKSEAMVLSRKPMDCLLQVGNVSLPQVKEFKYLGVLFTSEGKMECEFGRRIGAAGAVLHSLYRTVVTKRELSRKAKLSIYRSIFVPTLTYGHEGWVMTERTRSRVQAAEMGFLRRVAGVSLRDRVRSSAIREELGVEPLLLCVERSQLRWFGHLVRMPPGRLPREVFQARPAGKRPRGRPRTRWRDYISALAWERLGIPQSELVDVAREREVWGPLLELLPPRPDPG
>RTE-1_Mad_pol#LINE/RTE-BovB 407-3262  [Malus x domestica]
MRLGTWNIGTLTGKSMEVVEVMVRRRINIMCLQETKWVGSKAKDLENSGFKLWYSGTNRTRNGVGIIVDKTLVQDVVDVKRVGDRIMAIKIVIGQELINVISAYAPQVGLDTSSKEKFWEDLGDLVQGIAQTEKLFIGGDLNGHVGRETGNYGGFHGGHGFGERNEDGEAILDFAMAYDLFLANTFFKKREEHVITYKSGSSKTQIDFLLMRKGDRITCKDCKVIPGESVANQHRLLVMDVHIKRVRQKNKTWKCPRTRWWNLKEEKQAIFKEKVITQCVWDREGEASQMWDSMASCIRKVAKEVLGESKGFAPHQKESWWWNEEVQTKVKAKKECCKALYKERTDENGERYRKAKQEAKKAVREAKLAAYDDMYKRLDTKEGELDIYKLARAREKKTRDLNQVRCIKDEDGKVLATENAVKDRWRGYFHNLFNEGHEMSASLGELSNSEECRNYSFYRRIRKEEVVVALKKMKHRKAIGPDDIPIEVWKLLGETGITWLTDLFNRILKTKKMPNEWRTSTLVPIYKNKGDVQNCMNYRGIKLMSHTMKLWERVIEHRLRQETRVSDNQFGFMPGRSTMEAIYLLRRLMERYRDGKKDLHMVFIDLEKAYDRVPRDILWRILEKKGVRVAYIQAIKDMYEGAKTAVRTHEGQTESFPITVGLHQGSSLSPYLFALVMDELTGHIQDDIPWCMLFADDIVLIDETQEGVNAKLNLWREVLESKGLRLSRSKTEYMECKFSANGGQNELGVRIGDQEIPKSDRFRYLGSILQKNGELDGDLNHRIQAGWMKWKSASGVLCDRRMPLKLKGKFYRTAIRPAMLYGTECWAVKHQHVHKMGVAEMRMLRWMCGHTRKDKIRNEDIRGKVGVAEIEGKMRENRLRWFGHVQRRPTDAPIRRCDYGTEVQGRRGRGRPRKTLEETLRKDLEYLDLTKDMTQDRAQWRSKIHIADPTQ
>RTE-1_NV_pol#LINE/RTE-BovB 980-4079 via tfasty with RTE-1_DR, 1 frameshift. [Nematostella vectensis]
SKLKARFTPLTAAAWNVRTLLDRGGSERPERRTALVASELGRYNIDIAALSETRLAGEGMLCERGTDYTFFWSGRSPVERREAGVGFAVKSSLMTNPDEIKDKFYEDLNNVINTVPQADKLIILGDFNARVGCDSSIWEGVIGKHGVGKCNSNGLLLLQTCAEHELLITNTIFKLPTRNRTSWMHPRSKHWHLIDYSIVRKRDRQDVRVTKTMCGADCWTDHRLVVSKLNIRVQPKRRPQGVKKTKRLNTSKLKVSETKNTFSDTLKQRLDSTLLNGQDVETAWAGLRELVYNTALECLGQKIRKHKDWFDDNSTEIEQLLEEKRRAYKAHLVDPSSISKLDTLRKVRSTVQAKLRQMQDTWLSRKADEIQDYADRNDMKNFYNSLNEIYGPTTSGSLSPLLSADGETLISDKDKVLARWAEHFESVLNRPSAINDEAINRLPQVPVDETMDVVPTFVEIQKAVNLLSSGKAPGSDSIPAEVYKEGGAALTEKLYQLFQLIWNHEAVPQDFKDASIIHLYKRKGNRRICDNHRGISLLSIAGKILARVLLNRLIVHLEQGLLPESQCGFRKERGTTDMIFAARQLQEKCQEQNVDLYSTYVDLTKAFDTVSREGLWKIMAKFGCPSKFINIVRQLHDGMLASVQDNGETSHSFPVSNGVKQGCVLAPTLFSLMFSAMLTDAFKDDEVGIGIKYRFDGSVFNLRRLQAKSKISADTVNDLLFADDCALNATSQADLQHSVDLFSSACNNFGLKINTKKTEAMHQPAPGKPYTEPNIIINGQKLNAVDKFTYLGSTLSRNVVLDDEVTNRLAIASAAFGRLRKNVWKRRGIRTDTKIKVYRAVVLPTLLYGSETWTIYKRHAMKLNHFHTTCLRKILNVRWQEKIPDTEVLARAGLPSIHTILKQSQLRWAGHVARMPDERLPKKLLFGELQHGKRCKGGQKKRFKDTLKLSLKAFNIDHTSWELLAQNRQGWRRVIRNGAAACEANWTAAAEERRAARKSQDPKAATIPCPQCPRLFRAQIGLISHLRTHKRP
>RTE-1_NVi_pol#LINE/RTE-BovB 3-2803 Fragment, via tfasty with RTE-1_AG_pol, 2 frameshifts. [Nasonia vitripennis]
GGVLASGNFTYLYGSGGSLGTGFLVSKSIIHSVKSFKSVNDRLSYIIIEGEWYRYVFINVHCPTEDKEEEAKDLYYETLEQVIDQFASYDTRIVLGDFNAKIGREEMFRPTIGKESLHEASNDNGIRVINFAAAKDLIIKTTCFKHKDIHKATWTSPDGATQNQIDHFLIEKRRRAYRGADSDSDHFLVVAKLRARLVANQNSKRTNKVESFDIEKLRDRTERIRYQIEINNRFQALEEANTSPEGNDEPNSLWGDIEKKVKEAANKVLGKKKKPKSKPWFDEECELWFERRKKAKLDSLHNRSDRTVEEYSNVRKQAGAIYRNKKREYQKNLIRRIETNSKENNPREMYRGINAIRKGFRSRAQLMKDENGDLVTNDNELLSLWKNYFDKLLNVHENSEELGDEIHTAELHVEEPSYQEVEAAIKKLKNNKAAGNDSIPAELLKYGGVELTFKIYKLVCAIWKNETIPENWKESIIIPIFKKGDKTDCNNYRGISLLATCYKVLSNVIQARLTPFAEDIVGDYQCGFRRNRSTSDQMFTIRQLLEKKWEFCETIHQLFIDFKKAYDSIKRSKMYQILVLLGVPKKLVRLIQICLNGSTGKVRVGGNVSEPFTIRDGLKQGDGLSTVLFNLTLEYVVRKMQVSQLGATLNGTTQILGYADDLDILGDCRETVARNAEILIKAAEYTGLEVSESKTKYMIVDKLGICRGEGDLRVGNFTFEKVSEFRYLGTTINDRNEINVEINKRLHSGNACFYAVSNLLKSRLLSKNVKIRIYRTIILPVVLYGCETWALTKQADNRFRVFENKVLRKIYGPKKDEETGEWRRLHNDELHNLYASPNINRIIKSRRLGWAGHVARMGDDRTAARVMKGRPMVTRPLGRPRRRWEDNVKADLVEIGRVGVDRRGASWVGLTQDRAAWKACVDEAMNFRVPNAT
>RTE-1_PM_pol#LINE/RTE-BovB 282-3607  [Petromyzon marinus]
MTSPGQTPIGGARRLNLYPRGSSRNNEKPLRVATWNVRTLTAEERLPLLCRELDRYRLDLCGIQEVRWTGSGSCHHEGWTVLYSGQQTAKQQGVALLLNKRMKGAWERGGEVWEAVSPRLLWARLPINRRRGVVVVVTYAPTEDEHPWRDAGKADESDAFYDLLSQVLAKVAPRDRVIXLGDFNARVGHDAGTWSGVIGGHGPDQLNNNGRRLLDFCAAHGLVITNTLFRHRRIHTTSWMHAGSKQEHLLDYIVTDQRMRAHVLDTRTYRGADLPSDHRLVICKMRLPFFHSGGGCTPRTPFQPKVAWSQLSDESCKREFHHRLRLGLASSPTPPDVEGKWARFRTVTHAAAMAALGTRSRPPQRPWLTEEVFRMVEKKRQAHCHRLQNPTSENEEAYRSLRSEVRRAVRRCKDGWWSRVAEEMESASVARDHKSLFNSIKKVTCSATPITIIRGKNGDPISDPQEQVRRFAEHFCEVLGEGKSLSQENIVAQSEDDPAEAAVPQILEEVTPCEWLAEVPSVEEVLKAIRSLRPGKAAGRDDLPSEMLREGGVCAQTALYDIITTVWTTGRVPQDWKDALVVPLFKKGDRTDCNNYRGISLLSVPGKVLARIIQHRLARHAEERLAEPQCGFRKGRSCTDAIFSVRLLQQRCREFQQDLHLCFIDLVKAYDTISRPGLWVVLRAFGVPDPLLTIIKDLHDGERARVKLRGRESEPFPVHLGVRQGCPLAPTLFNIYFDHVVREAFNSCTGGISXWYRYNGRLIDARVRSRDGSLLLNHVMYADDLVIAAHSEEELETLLLRLERATKRWGLTISPTKTKHLPGYFVPSDTPPPQLPIGDGAVVERVESFPYLGSVLMTGSSLTAEVSLRISRAAISFHRLRNAVWKLPGLSLRTKLQVFSATVIPSLLYACETWTPLMEHLRRLETFRLACLRSILGLTRLDCVRSSQILERSGQGPIGELLRQARLRWLGHVARMPSHRMPKQLLFGRIEGAKRARHGLEKRWSDVVQEDVELSGLADDWYQRCQDRPLWRRLVKDATGQLEAVALQQQRRAEERRSQQRAERRVAKAQQVGTVGGTGGASASHLSQSTRGTWVCPVTSCQRAFDTS
>RTE-1_SBi_pol#LINE/RTE-BovB 1-2024 via tfasty with RTE1_MT_pol, 1 frameshift and 1 stopcodon. [Sorghum bicolor]
ARTKWWKLEGEASKVFNERVVEEGPWKDEGDANNMWKKMATCIRKVAAEVLGVTKGSGCDLKDAxWWNEDVQKAIKEKKECYKRLYQDRCADNIEKYKVAKKTAKRAVGEAKGRAYEGLYQCLNTKEGGKDIYRMARARDRKTRDFNQVKCIKDEREQLLVKEDEIRHRWQEYFDKLFNGENENSTGQLDNSFDDTNRCFVRRFQVQEVREALKRMKVGKALGPDGIPIKVWRCLGDLAIVWLTRMFNNIYRSNKMPEEWRRSILVPIYKNKGDIQSCTNYRGIKLMSHTMKPWERVIEHQLRRSTIEAIFLIRQVMERFREQKDLHMVFIDLEKAYDKIPRNVMWWALDKHKVPTKYVTLIKDMYNNAVTSVRTNDGNTDYFPIKIGLHQGSALSPYLFALVMDEVTRDIQGNIPWCMLFADDVVLVDESQAGVNRKLELWRQTLESKGFRVSRTKTEYMRCDFGNATHEEGEVSLEGQVVPKKDTFRYLGSMLQKDGDIDADVCHRIKAGWMKWRQASGILCDKRVPQKLKGKFYRTAIRPAMLYGAECWPTKRRHVQQLSVAEMRMLRWICGHTRMDRVRNDDIRDRLGVAPIEEKLVQHRLRWFGHVQRRPSEAPVHCGVLSRDINVRRGRGRPKLTWGEAIKRDLKGWDIPRDLCLDRSAWKAAIDVPEP
>RTE-1_TP_pol#LINE/RTE-BovB  869-4189 [Thalassiosira]
MVQASAVVHTGASSRTDESGTFSIATWNIRSGRAGGLESACRALGAMNVDIGFLQETKLTGGVYTRQSSGYQVIASDASSNRQGGVALCWKEHDSYELEEWRFFGPNVLAFRLVTGGKDFYCVGCYIPPSEEDQSTLDNVRRAQQQCPEKFELLLFGDLNIDLDAPRDTREEIIAEQCDYWKLTCMTTMFKQRRTRRVKGRWTWRQQRLGRWVSTKPDYFLADTAVRRLFKKVVIRRPRHHDSDHRAIIATFWGGQEKRMRNYRRRVASIPLRMPQFGPLPEMETIFEELKEEVGGKSKRDLPHNQWISDRTWALVDYRAMLKTRGSLQQRGERNLSRRIHASFRQDRMARAENAAMEIEAKLNGGDFKAGWTIAKRWYRAATDRGPKPCFETMETQTTERVELYGKVEPPGEPIPINVQPFGICDGTPDDDEIRDVVKYHLKSGRAGGASFLRAEDIKRWLRDIEQEEDPERSGGCGRNWRRFVSLIQMIWETGTVPKQMLWVIVVLIPKGGGDYRGIGLLEPFWKVVEIIMDKRLNEVKFHDCLHGFVTKRGCGTAGLEAKLTQQLAYIRQIPLYGIFLDLRKAYDAMDRERCLEILQGYGVGRNMLRLLEYFWNNAELVCRAMGRYGKPFKAYRGVTQGGPVSPKIFNIMVDAIVREWLLQSLGEAEPEMPEYKALSCIFLALFYADDGYIASTDPELLQESMDVLIALFERVGLRTNVSKTKVETCIDGKIRTRLSDPVYTRMRSGLGTRKEWEARKVECDLCNKQLAASSLSNHLETQHGVFRSRVINQDLLVEHESRTFTAHRNVSGTYACPVPGCVGTAHTNWTLRRHFHGRHPWDCVSIDGANPLPKCERCGLQCTHRALNTTHTTSQYCREATERKVQQQAAVNSARALNVSFTAYGQSLERVEVFKYLGRLLAMDDNDMPVVRANLKKARKCWTMFSRLLTGENMSPRVCGMFYRAVIQSVLLFGSESWVLADTAMRVLEGFHVRSAYRMAREHKPRKNNDTGVWRYPSTEEVLEEVGLLTIRQYIEVRRQTIANYIVHRPIFDLCLGEERRRGTSKRLWWWEQRMDLDLAREMGDVISVVAEDEESTGSWTDEEV
>RTE-2_AG_pol#LINE/RTE-BovB 18-3147 via tfasty with RTE-1_AG_pol, 1 frameshift.  [Anopheles gambiae]
MLGAACPFCPGILRDFNQGCVGPTTRLEVGGEALQATPGKTYATXGNQRISNRTNRYRPTQPNKANDWKLGTWNCRSLTAPGSTRILSDEVRARGFGIVALQEMRWKGVTERPYRSDCMIYQSGGEKHELGTAFLVIGEMRKRVIGWWPINERMCRLRIRGRFFNLSIINVHSPHLGSTDDDKDNYYTQLEREYDRCPQHDVKIVIGDFNAQVGREEAFKPTIGSFSAHRLTNDNGLRLVNFASSKHMNIRSTFFQHAPRFSYTWRSPQQTLSQIDHVLIDGRHFSDIIDVRTYRGANVDSDHFLVMVKLRQKLCVANKLRYQPTPRLNTDRLKQAVVARDFAIALGEALPEDNTTEAMSLNDHWRMVEQAISSTAERTIGRVTHNQRKEWFDDECRRALSEKNAARTRMLQRETRQNVEDYRRLRRQQTLLFQDKKRRFEESDEQLMQQLSQSGETRKFYRMLNAARSGFTPMTAICRNEEGDILSDEREVIDRWKCYFDGHLNGADTGEDRRRKQRRATLRQQQHDNDEVPPPSLDEVISAIKQLKCNKSAGSDGLVAELFKMGPERLAVIMHRLIVRIWDQEELPDEWKLGVIHPVYKKGDRLDCANFRAITVLNAAYKILSRILFCRLSPLATDFVGSYQAGFVGGKSTTDQIFTLRQILQKCREHQIPTHHLFIDFKAAYDTIDRNELWNTMQQYGFPGKLIRLLRATMDGVQCKVRVTNMLSESFESHRGLRQGDGLSCLLFNIALEGVMRSAGFDIRGTIFTRTLQFLGFADDIDIIGRTTAAVCEAYTRLKREAARIGLRINATKTKYLLAGGSDRDRARLGSRVSVDGDDLEVVEEFCYLGTIVTSDNNVSSEIRRRIVQGNRAYYGLHKLLRSRRLQQHTKCAIYRTLIRPVVLYGYESWTILTEDANALAIFERRVLRTIFGGVCEHGVWRRRMNHELAELFGGADILTVIKAGRIRWLGHVMRMPDSCPTRKVLVSDPFGTRRRGAQRARWLDQVESHLSEIGCSRGWRTAAQDRVSWKRIGDLAMSTRRAHT
>RTE-2_BF_pol#LINE/RTE-BovB 1-3039  [Branchiostoma floridae]
MTVHKGKRRLPVRTRATSSVSENNQADDMNTTIAKKLQLRKMNLGIGTWNVRTLNAEGKLQQLEYELKNYTWDILGIAEARLTGSGEITTDEGHKVYYSGHESAHIHGTAIMVHKETKDAVIEHNPVSSRLMSLRLSAKPFNVTIVQAYAPTSDATDKDLNDFYNGLTVLMQRIPKKDITVLLGDFNAKIGTDAYKDWSGTVGKHGFGNTNDNGLRLLEFARYHSLAIANTFPAHKPSRKATWHSPDGKTHNMIDYILIGKRHLSSLNLAKTRTFPGADVGSDHDMVLTTLSVRLKSLQKKKDGRIHYNVKKLKDPNTLAAFQSEIEERLAPLLADNAEKDDLASEAESNLKAAAKAILGKERLTKHPWINEQVLQKCDERREKKKVRFKSRRENREYQTVNREVKQAIKDAKEQWIQQECSKIEAGIRSNNTKQAFQTLKTLTHSSTNQITCIEDADGNLLTAKTDIVKRWEEYCRELYNFQLTAEEGVLQDLKSRTCQFQEDDEPDILESEVTAAIKALKQGKSPGIDNVPAELLKAGGETVVKVYTRICNHVFKTGKWPDSWTTSIVIPLPKKGNLKKCQNYRTISLISHPSKILLKVILNRLQPQAEQILAEEQAGFRKGRSCAEQIFNLRLICEKYRELGKPVYHTFVDYKKCFDRVWQDGLWAVMRRFRISTRIVNSIEALYKASKSTVMTAGEFSECFPTSVGVRQGCLLSPTLCNIFLENIMREALTPKESPVKLAGRIITHLQFADDVDLIDGSAADQQEQFSSLDSTSRRYGMEVSLDKTMCLVSGPPGFRTQVTVRGTELEQVGEFTYLGSLQTEDGSSAREVKVRIAKSTLALSKLKHIWSSKNITMPTKIRLLRSLVLSIFLYGAETWTLNADIKKRINALEMNCYRRLLGVHWTSHTSNKDIQERITTLAGPLPSFLSLVKRKKLQWFGHACRRKGSLTNTILQGKVEGARPRGRPRRTWINDLKEWTGRTSAQLTRLADDRQSWKSLVNSITAPTAT
>RTE-2_CQ_pol#LINE/RTE-BovB 616-3624  [Culex quinquefasciatus]
MARRLEIRNKRQKPIEKQTTDWRLGSWNCRSLNFLGFEFALAXELQPRNFDVVALQEVCLEEEQVLDWPGRQTNSRFXLSGGKDKKLGTGFIVRGKMQDRVFGFTAXSERMCKLRIRGRFFNYSIINVHCPHEEKTDDEKEAFYATLEEVYDGCPRQDVKIIIGDMNARFGREEMFRPTIGPESLHAVTNDNGQRCIDFAASRGMVVRSTYFPRKDIHKATWTSPDQRTKTQIDHVLIDGRFFSDVTHVRTFRGANIDSDHYLVGVDMRSKLSTVFNQRRSRRAPPFNTACLQNGEVAHSYAQQLEANLPGEEELGAASLEDGWSRIRSAIGSAAEATLGSAIRVSRNDWYDDECQRITAEKKAAYDRKLHKATRGNVERYRQARNRQVAVFKLKKRQQEDRDCAEMEQLFRANETRKFYEKVNRSRKGFVPRADVCRDNGGNLIVNKSEVLDRWKQYFNEHLNGDEADGDGVGVNLGAPAADEQFPAPDLETVKREIRKLKNNRAAGKDRLPGELFKYGGEKLARALHCVISKIWEEEKLPEEWMDGVVCPIYKKGDKLDCGNYRGITLINAAYKILSQILCRQLSPHARRFVGPYQAGFTGARATTDQIFCLRQILEKCREYNVPTHHIFIDFKAAYDTVDREQLWQIMHENGFPDKLTRLIKATLDGVMCHVRVSGXLAEPFGSRRGLRQGDGLSCXLFNIVLEGIIRRAGIETSGTIMNKSYQLLAFADDIDIVARNLETVMDVYTRLKVQARRVGLGMNTTKTKYMRGRGSKDVGPPSLTPLTVDGDELEEVSEFVYLGSLVTADNDTSKEIRTRIFAGNRAYFGLRKTLTSDRVQRRTKLTMYRTLIRPVVLYGHETWTMRQEDERALGVFERKVLRTIYGGVQVSDGVWRRRMNHELHAFLEEPTIATQAKIGRLRWAGHVARMDESQPVRLLFDRAEPAGGTGRRAGKPRARWGDQVNGDIRKICNLGNWRVAAQDRERWKRLLATARVPGALC
>RTE-2_MD_pol#LINE/RTE-BovB 299-3463  [Metatheria]
MDNMKSSRPERQTALVVRELSRYRIQIAALSETRLANEGQLTEVRAGYTFFWSGRHDEEHREAGIGFAIKSNLVNKLVCLPKGVNDRLMTMRLPLAGKCHATIISAYAPTMMNPDEVKEKFYEDLETLINSVPKEDKLVILGDFNARVGTDYQTWQGVLGRNGVGNSNSNGHLLLKTCASHDLLITNTVFHLPKRNKTSWMHPRSKHWHLIDYVIVRRRDRQDVRVTKAMCGAECWTDHRLILSKLNIHIQQKRWPQGKTTTRRLNVNRLERFSVREQFVADLEGKLSQHTVGNSGAEKEWAAFRDLVYSTTFTHLGQNTRKHQDWFDENDGEIQKLLNEKRELHRVYQQDSSSVSKKAAFNSIKSKVQTKLREMQDSWLSKKADEIQFYADSNNPKRFYDALKAIYGPKTYGASQLLSADGATLISDKDMILERWAEHFHSVLNRPSSTNAEAIDHIPQVEVNPSLAELPTEEEVLNAIRLLSCGKAPGADSIPAEIYKAGGPLLIQKLTEIFRVIWQEEVIPQEIKDASIVHLYKGKGNRLSCDNHRGVSLLVIAGKILARVLLNRLILHLEDGHLPESQCGFRKGQGMVDMVFAARQLQEKCQEQNRGLYTTFIDLTKAFDTVSREGLWKIMAKFGCPEKFISIVYQLHDGMLARVLDNGRCSRAFPVTNGVKQGCVLAPMLFSMMFSAMLSDAFNEDENGIKVSYRTDGKLFNLKRLQAKTKVEGELVHDFLFADDCALNAASETEMQQSMDRFSAACANFGLTINTKKTEVLHQPAPHHPYVEPSVTANGEILNAVDKFTYLGSILSRDXHIDDEVDARIARASSVFGRLRRKVWERRGIRLPTKLKVYRAVVLTSLLYACETWTXYQRHARKLNRFHLNCLRKILKITWQDKVPDTEVLSRAELPSIQTLLQRAQLRWAGHVVRMPNVRLPKRLFYGELTQGKRSHGGQKKRYKDTXKVSLKNFGIDCETWETLAQDRPAWRARIKEGAVLYEQSRIAVAQKKREMRKFRDISIPNVHTGYLCPTCGRAFRAHIGLISHSRTHCTLTPT
>RTE-2_NV_pol#LINE/RTE-BovB 736-3397 via tfasty with RTE-1_DR_pol, 1 frameshift and 2 stopcodons. [Nematostella vectensis]
NNKKILKKTLKLTLASWNVRSLLDSSTSKSRRPERRTALVARELARYNVDIAALSETRFPDKGQLSEIGGGYTFFWSGRSSEERRESGVGFAIKDHLIRKLDSIPEGINDRLMKFKLPLGRGRSATLISAYAPTMTNPEDAKEKFYEELDALISTIPQSEKLLLLGDFNARVGQDHQAWEGVIGHHGVGKCNSNGLLLLRMCATHGLAITNTMFRLPTRKKTSWMHPRSKHWHLIDYVIVRAKDIRDVCVTKAMCGADCWTDHRLIISKTNLHIQPKRRPQGQTVVKKLNVNKLKLPSIQEKLVESLENQLTEDIGNDWNSLKTTIHSAALEVLGSVTRNHQDWFDENDAKITALLEEKRQPSELIKMIPTQSRRKTPTSANADRYNxNSVTFKTHGxVTKLMKFKALQTDTTRNDSTIRSDVYLDHXXXXXXXXXXXXXXXXXLYTTFVDLTKAFDTVSREGLWKIMAKFGCPERFIKIVRQFHDGMMARVLDNGNTSAPFQVSNGVKQGCVLAPTLFSLMFSAMLTDAFREIPLGIPIRYRCDGKLFNLRRLKAVTRVKETVIRDLLFADDCALNAVNEHDMQQEMDAFSSACDNFGLTISIKKTEVMYQPAPGKPYQEPNITVKGQRLQDVENFTYLGSTLSRNANIDAEINNRIAKASSAFGRLRKSVWERRGISQCTKIKVYRAVVLTTLLYGCETWTIYRRHEKLLQQFHLRCLRNILNIRWQDRITNTEVLERANLPSVITTMRKAQTRWAGHVCRMSDSRIPKQLLYGELSRGSRKVGGQRKRYKDCIKSHLKDFNIDVSTWETAASDRPIWRNLIHKGAIHSENKRSNAAKNKRQKRKARADQPTNMTPSYWCPTCGRGFLARIGLISHLRIHPSAP
>RTE-2_NVi_gag#LINE/RTE-BovB 1-687 via tfasty with CR1-21_HM_gag, 1 stopcodon. [Nasonia vitripennis]
NEKVEEVRRLIEEEKRERMELEERMKRDAEEERRKRKELERKMEERVKVLEDKAEGEKIEKAESGSKGKEEKEMEDKxLKELEWRIEEGERERKRNNVVLTGLKEERWDKVKIEGWFKEKLEITVKVKRTWLIRGKATNRIRVECVDREEKEKIMEAKNKLKGTDLFIDHDTTWIERRNREKLNGLAKEWRSEGKPVKVGRNKLTVGDEEYIWNERKDQLFRKRGRRQE
>RTE-2_NVi_pol#LINE/RTE-BovB 692-3677 via tfasty with NAVIRTE1_pol, 3 frameshifts and 3 stopcodons. [Nasonia vitripennis]
GKKKGRGKEKEKESLKVLSWNVAGLKGVDEEGWGFLREFDVICLQETWTGGGEEKSIRKRLQGYEVEVREAKKGGSRGRLKGGMIMAVRKRSKEDKVEWMEGETGEFIGGKIRIKGEEWWIGSTYMRDEKKKNYEEIEEMLERAGGGGRILWCGDLNARTGTEGGSLDEEGNEERRESKDRTVNKEGEELLDRLKEMGLSILNGNIEGDEEGEITYVGGMGCSVIDYGIVNEEGRRKIKRMKVKDRIESDHGALEIEIDTERKVEVVKEETSRALWTEKAIREYRSWLEKGGEAKSWREMKVKIRNAIQTKRGVRKKNEKNRWWDEECRKKRAEMKRAKKGLEEMGSTGTHRxRENxRTCSVEHVExTEVREIIRKLKEKKAPGDDGIQNEAWKYGEENLVEELKEILGKIWKGEGLPEEWRKGTVKPIFKKGDKGECKNYRGITLMDTGYKIYAELIRGRMEKKLEEENRLSDTQMGFRKGRGTIDAIYVVSKAVEQELRKKGGKVYACFMFADMKAAFDKINREEIWRMMKRLGVSRKIRERVEEIYEKTECEVNIGERKVGSFVTQKGVRQGCPLSPLLFNVAMADLEVEMGKIQEGGIILGKKKKLWSISYADDVVLLATNASGLKQMLKRFKGFIRRKGLELNTEKTKIMIFRNGGRRKREEKFEWNGEEIEVVKKFEYLGYTMKENGKEEEQIKKVKGKAIAVLGTVWGIGEAIFKESWKMRMKLFDALVQSVMEYGAEIWGWKGQEELEKIQRRYMKWVLKLERTTPAHIIHWETKRFKLETRARKRAVRYEGKLRKAKENSLLRECWSLLKKEGEKEIRRGRGKDVRRSELEKCGISVEEYNRRVEEGEGVEEEIERINKDTQWQKWREEIRGSKYAEEVRELLMEQGEIPEYLGETGEKRRGALEKIARFRLGSETRGNHYWRKEEDRKCRMCGREEETLRHVMEECEETKISGKKWKEICGGKRSQIGNLNSIIWKRKNKEKVTE
>RTE-2_PM_pol#LINE/RTE-BovB 493-3875 via tfasty with RTE-1_DR_pol, 1 frameshift and 2 stopcodons. (all between bp 545 and 665; perhaps this is the end of gag) [Petromyzon marinus]
MGATGCHRRWEGSLHPNGxLPPASSWAAPGQxGAFPPRLTCSNGCLELMVHHQTSGLQPPAPDKSKTKRKKVPALHFASWNVRTMCSGLSEDLLQIEDIRKTAVIDRELARLHVDIAALQETRLAGSGSLRESDYTFYWQGKQQNEPRQHGVGFAVKNTLLGMIEPPTAGSERILLMRLLTASGHVNILSVYAPTLYSPPEIHDQFYEELHNIIRKIPSSEHMFLLGDFNARVGADHDAWPACLGYHGIGKMNASGQRLLELCSYHNLCITNSFFLTKPCHKVSWRHPRSLNWHQLDLVITRRALLNSVLITRSYHSAVCDTDHSLVSSKVRLRPKKIHXLKQKRYLRINSAKXSLPELTQSFQHSLEQSLHDTPDGSVETKWAYIRDAIFNAAINTFGKQTRRNTDWFEEHLAILEPILQAKRMALLKYKQVPSTGSLRALKAARSAAQTTARRCANNYWVNLSSRIQLASDTGNIRAMYEGIKTAFGPNIRRTAPLKSSTGAIITDKQEQMARWVEHYSELYSRDNGVSEAALAAVKPLPTIHELDNVPTLKELDNAINSLASGKXPGQDGITPEVLKCAKPAVLTKLHELICQCWEEGAVPQDMRDSNIITLYKNKGDRGDCNNYRGISLLSIVGKTFARVALSRLQILAERTYPEAQCGFRAGRSTIDMLFSLRQLQEKCREQRMPLYLAFIDLTKAFDLISRGGLFKLLKVIGCPPKLLAVISSFHDNMKGTIQHSGTTSEEFPILSGVKQGCVLAPTLFGIFFSLMLTHAFGTAEEGVFLHTRSDGKLFNLGRLRSKTKVRKVLIRELLFADDAALTAHTEQGLQTLIDHLANACNNFGLTISLKKTNVMGQDVRDTPSINIGSYTLEVVQDFTYLGSTITCNLSLVTEIDKRIGKASTAMFRLTKRVWENKSLTLNTKVQVYRACVLSTLLYGSESWTTYAHQEHRLNTFHLRCLRRILGIRWQDRIPNTSVLNLANIPSMYSLLSHRRLRWLGHVRRMQDGRIPKDVLYGELASGTRVTGRPVLRFKDVCKRDMKSCDINPNDWEKTAGDRLSWQQAVKTGLRRGEEKRHTAWQTKRERRKEKATNTSGAATAFTCNCCGKDCHSRIGLLSHSRRCKTYS
>RTE-2_SP_pol#LINE/RTE-BovB 249-3344 (replacing the fragment gi|72094933|ref|XP_797963.1|) [Strongylocentrotus purpuratus]
MMESLNSTRVKAPDNTNQPFRPTGLQTAVHDDASSPNPVGRDHVDNPKEKTALLTAKKLIGIGTWNVRTLNQDGKLDILLNQLEKFKWEVIGVSETHWKESGDFTEGGYKVLCASEEDVHRRGVALILNKQAQKALLGYNTISPRLISARFQTQAGALTIIQVYAPNMADREEMIDTFYDQLQQTIDDTPNKDILIVQGDLNAKVGRDWDTWKNVIGHHGYGEMNNRGEKLLNFCMANNLAIANTMFKQKKASREWTWESPDGRTKNKIDFVMVNNKWKSSVQCARSFPSADVASDHQLVICNFKLRFKTKPKQNXMKRYDVSKLKDENTSKNYQAIIGGKFRPLLDHSDTHLDIDSIWEKIKQAFNSTAKDVLGMKKNRPQEAWISQEVLDLSEERSKIKQAKQNDPSLKPRYNFLNREIKRKTRGCKDAWLQDLCSRVESAHQAAKSKEVYATIKKITKSASKRMQSVKSKTGRTLTEXSEVKKRWKENYDELYNEHNPKNDTVANSLPNSSSDDPEPNILKEEIKSAIKKLSEDKAPGFDTVTSEEIKAAGETGTDIFHYLCNQIWESEKFPEEWGRAIITPIYKKKDKLDCGNYRGISLLSHAGKVLTTILQRRILKRTEEILSESQAGFRPGRATTDQIFTLRQIAEKYLEKNRSLYCCYIDFQKAFDSVWQKGLWKAMGCFGYPSKLIRLLQALYDQSQSTVRVNGELTEWFKTTVGVRQGCAISPQLFNILLELVMTMAMEEVQIGAKIQGTCINNLRFADDIVLIAETPEELQTLVDKVYKASCDLGLKVNIAKTEVQAISKSKCNLNIDIANDRLKQVEDFVYLGGXIAENGSSXSDIKNRIXKAGAAFQRLNNIWTSKSISSHTKMQLYQSLILSILLYGAESWTVKKEDSNRLQVFEMACLRRIMGVTRLDKIRNTHIKESLNLDQDVMDKVSTKRXKYFGHVLRMKPTRYPKIAVEGKVTGNRPRGRPPKRWLDCISEDCKARSIPRLTDASRLAADRKTWHTITIQKPSRGPXPAWTA
>RTE-3B_SP_pol#LINE/RTE-BovB 2-3072 Nearly complete, via tfasty with BovB_pol, 4 frameshifts and 1 stopcodon.  [Strongylocentrotus purpuratus]
GQRRLSELVFTWIYSWSPHCGEEGNGKPLHYSSQDIPWKVTIQSQRETAxREPLEIEVPRSVGLPMCDRWDPIVIQHLSATVTSCCIGTWNVRTLYQKGKLDNVVQEMNRMRINILGISETRWTGSGEFTVEKHRMIYSGGIRHERGVGVLLDPFTANCVLGFWAVSDRVLLVKLQGKPFNMAIIVVYAPTAESTDEDIDxFYEQXKSQCKSNEIVIAMGDMNAKVGRGRYGGTVGPYGIGDRNERGNRWVEWCEAKGMVIVNTWFKEHPRRIYTWKSPGDRARNQIDYITINERFKRGVKQAKTYPGADCRSDHIPVVATLQCKLKKMTKAKSIQKVDFEQLQNRDVRLRYTVKVQNRFDSLTDQGEEVTWESMRDILVETAEETLPKKEKKSKQRWMTEEILSKMSKRQKIKDRDGIEYRELDREIHDHCTKAKEEWLNKQCAEIERSFNANDPRVFKKVNDLSGKKLRSSKLGCIKAKDGSVLVEKEEILNRWTEYIGELFDDVRKEPPHCAGSIEGPRILLSEVRSAISMMKRNKAAGPDGVVMEMVEALENYGVMKLTEVINKIYDDGKFPDDLCKSIFITLPKKPGAVECGQHRIISLMSHITKIILRVLLQRARNHLTPEISNVQFGFVKDAGTRNAVFVLRSIAERAVEMQKDVFLCFIDYTKAFDKVRHDQLFEDLTKIGLDTKDVKLLQNLYWEQTACVRVETELSDYINIKRGVRQGCVMSPDLFNYYSELILRNLEQERGLKVGGHNITNIRYADDTILIAESEKDLQRLLDVVVRESDKRGLSLNYKKTECMVISKKGGIPCSLKINNNQIKQATSVNYLGTTITDDARGEQEIKRRIALAKSTFSKLENILKNKKLKMKTRLRVLNCYVYPVLMYGCEAWTLTSDLRKRLESCEVWFLRRMLRISWTERVSNDEVFAMAGTRRKLLNNIRGRQLSFLGHVIRKNGLENLALTGRIEGRRSRGRRRILWMSSLRSGISECGIDLGENELLHRIWDRELWHSMVANVSGYGT
>RTE-3_AG_pol#LINE/RTE-BovB 2-1564 Fragment [Anopheles gambiae]
SIGADDEVPPPSLDEIASAIKQLKSNKSAGSDGLAAELFKMGPERLTVEMHQLIVKVWEQEELPEEWKLGVIHPVYKKGDRLDCSNFRAITVLNAAYKILSQILFCRLAPLATNFVGSYQAGFVGGKSTTDQIFTLRQILQKCRERQIPTHHLFIDFKAAYDTIDRKELWSIMQRYHFPGKLIRLLEATMNGVQCKVRVSNLTSESFESHRGLRQGDGLSCLLFNIALEGVIRGAGLDNDIRGTILYRSLQFLGFADDIDIIGRTTAKVCEAYTRLKREAARIGLRINATKTKYLLAGDSDHLGSSVLVDGDSLEVVKEFCYLGTVVTSDNDISSEIRRRIVQGNRAYYGLHRLLRSRRLRARTKCEIYRTLIRPVVLYGHESWTIRAEDANALGVFERRILRTIFGGVFEHGAWRRRMNHELAELYGEPSILTVAKAGRIRWLGHVMRMPDSCPTKKVFDSDPQFGIRRRGAQRTRWLDQVKRDLSEIGCLHGWEAAARDRASWRXIVDRAMSHRRALS
>RTE-3_BF_pol#LINE/RTE-BovB 765-4151 (no M) [Branchiostoma floridae]
SGTPRVAFDSGKDLRNPIGQSPPALSRAAPGQLGTDPSRSACFIGCLELRVLLDKWIVCRAPDKQESKEKRRQKTQPIRIGSWNVRTMRTGLSDDLTVIEDIRKTAAIDRELYRLNIDIVALQETRLPDSGSLKEDSYTFFWQGKGMEETREHGVGFAVRNTLLHMIEPPTGGTERIITLRLSTHEGPVNLLCVYAPTLQATSEVKDQFYGQLDSAIKKIPVSEHIFILGDFNARVGTDQESWQTVLGHHGIGKMNENGQRLLELCCYHNLCVTNTFFQNKAIHKASWRHPRSQRWHQLDLVITRRTSLNSVCNTRAYHSADCDTDHSLIAARIKLRPKKLHHMKKKGQPKIDVSKTMLPDRNQKFLECLEGTLNNIQPQDAEHRWETLSKTIYSAAAQSYGKKERKNTDWFEAYISELEPVMDTKRKALVSYKQNPSSQNLQALKAARQEAQRASRRCANNYWLLLSERIQLASATGDIRRMYEGIKQATGKPIKKSAPLKAKSGEIITDKDKQMARWVEHYLDIYSTENSVSQDALDNIEDFSVLAELDADPTIEELSKAIDSMSNGKAPGEDNIPAEIIKSGKSVLLEPLHELLRLCWKEGKVPQSMRNSKIVTLYKNKGDRTDCNSYRGISLLSIVGKVFAKVVLTRLQVLADRVYPESQCGFRAERSTTDMIFSVRQLQEKCREQQRPLYIAFIDLTKAFDLVSRRGLFQLLRKIGCPPQLLDIIISFHEDMKGVVSFDGETSEPFAIRSGVKQGCVLAPTLFGIFFSLLLKSAFGHSTQGVHLHTRSDGKLFNLARLRAKTKVRSVLIRDMLFADDAALVAHVEDELQQLLNQFAHACSEFALTISIKKTVVMGQDVPQPPVVTIGSEVLEVTDHFTYLGSTVTSNLSLDKEIDRRIARAAGVMTKLGTRVWNNSHLTLNTKLEVYRSCVLSTLLYGSETWTTYAKQENRLESFHLRCLRRILGISWRDRVPNTTVLERSCSLSIHLLLCQRRLRWLGHVSRMKDGRIPKDILFGELATGKRPVGRPALRFRDVCKRDLKLTDIDPASWEQIAADRNRWRHTVKDGLAKGQERRTEHLESRRRKRKEKPQQGNPSAFICPNCGRDCHARIGLQSHSRRCQPP
>RTE-3_BM_pol#LINE/RTE-BovB 3-1460  [Bombyx mori]
MYEVREAVRSMKSGKSEGPDGIPVEVWKILGEDGYKWLTLFFNKLLQEEVIPTEWSTSTLVPIYKNKGDVQDCGSYRGIKLMSHSMKVWEKVIEKRLRDESEITQNQFGFMPGRGTTDAIFALRQVCEKHRDVHRNLHMVFVDLEKAYDRVPRAVLWWALNEKGIPGKYVRLICAMYSRARTYVRTAAGNSDEFNVAVGLHQGSALSPYLFLLVMDALTSEIQEEPPWCMLFADDIVLVGENGLEVQNILEKWRCKLESVGLKISRSKTEHLFCDFGGLSNFTPISLDGAPLPVCQDFRYLGSVIQSDGELDRTVRHRIDAGWMKWRQVTGTICDSHIPLPLKGKIYKTLIRPAVLYGSACWTTKVADERRLHAAEMRMLRWMCGVTRMDRIRNEYVRGSLKVAPVTEKLRSARLGWYGHVMRRNENEVVKRVLTMNVEGFRGRGRPKKKWMDCVKDDMGRRGVSEEMVYDRRVWKEKTCCADPR
>RTE-3_CQ_pol#LINE/RTE-BovB 933-4019  [Culex quinquefasciatus]
MVLRRDRGLVQATRTRRKTPVQEAHDASRTNRHGTGHHMRSHDWKLGTWNCRSLKFDGSIRILSDILRVRKFSIVALQEVGWIGAEEVQAYPRIGCTIYQSRGENKRLGTAFIVLGEMRDRVIGWTPLTDRMCVLRIKGRFFNISIINVHSPHSGSEDDDKDAFYEQLNWTYNSCPKHDVKIVIGDFNAQVGQEEEFRPVIGKFSAHVRTNENGLRLIDFATSKNMAVRSTCFQHNLRDKYTWRSPQGTESQIDHVVIDGRHFSDIIDVRTYRGANVDSDHYLVMVKMRQRLSLAKSVRYRRPPRLDLERLKLPEVASRYAHSLEAALPGEGELLEAPLEDCWRSVKAAITNAAESTIGFVERGRRNDWFDEECRAILEEKNAARRAMLQYNLRDYEEAYGQKRRQQHQLFRAKVRHQEELEFEDMEQLHRSNETRKFYKKLNGSRNGFTPRVEMCRDKNGAILTNEREVIDRWKQHFDEHLNGAEAEAGVQGGRREDFIGTAGEGEEPVPTMREVKDAIKKLKNNKAAGKDGIGAELIKMGPEKLASCLHRLIVRVWESEQLPEEWKEGVICPIYKKGDKLDCENYRAITILNAAYKVFSQILFSRLSPIAEGFVGSYQAGFVMGRSTTDQIFTVRQILQKCREYQVPTHHLFIDFKAAYDSVDREELWKIMDENGFPGKLIRLIKMTMDGARCCVKISGAESDSFTSLGGLRQGDGISCLCFNVVLEGVMRRAGFNMRGTIFSKSNQFICFADDMDIVGRTFKAVADAYTDLKREAEKVGLRVNVAKTKYLLAGGTESLRARIGPSVTIDGDEFEVVEEFVYLGSLVTSDNSCSREIRRRIIAGSRAYFGLHKSLRSRKFSLHTKCSIYKSLIRPVVLYGHETWTMLEEDLRALSVFERRVLRTIFGGVYENDGWRRRMNHELAQLYNEPSIRKVAKAGRLQWAGHVARMPERADHLSQRNQKINPAKLVFVSEPVGTRRRGVQRARWVDQVESDLESVGAPRNWRNAAMDRACWRRIVQQAKLMV
>RTE-3_NV_pol#LINE/RTE-BovB 839-3985 [Nematostella vectensis]
MDRGIIRPQRRTALVAKELARYNIDIAALSETRLADEGSLTEQTSGYTFFWKGKAAHEDRIHGVGLAIRTSLLKELPDLPTGVNERLMKLRLPLCYKRYATIISAYAPTLTSPEETIEQFYDDLSSILSSVPAGDKIILLGDLNARVGRDYERWDGVLGRHGVGKMNNNGLLLLSKCAEYDLVITNTVFRMADKFKTTWMHPRSKQWHLIDFVIVRQRDIQDVHVTRAMRGAECWTDHRLVRCTLKLHIAPRHPKRPKLVRTPFNTARLQQPSYLQKFQNSLNEKLTANGPLSGDPKEKWNQFRDVVTETAKTALGPKTRKHQDWFDENNEAIENLLARKNKAFMEWQNDPSSAAKKDRFKSLQYLAQQEIRTMRDQWWEKKAEEIQGFADSNNSKHFFSSLKTVYGPSKSGSAPLLSADGATLIKDKTAINMRWREHFSQLLNRPSSVDQSALDQIPQQLLIEELSDPPSMEELTKAIKQMSSGKAAGKDGIPAEVYKALSDEALHAFHSVLISIWDEEVMPADLRDASIVALYKNKGTRTVCENHRGISLLTIAGKILARIMLNRLIPSVAEKNLPESQCGFRPGRCTVDMVFTVRQIQEKCLEQNMNLYAVFIDLTKAFDTVNREALWIILSKLGCPAKFTTLIRLFHDDMTGEVLSDGEPSESFSISNGVKQGCVLAPVLFNLFFTQVLLHAVRDLDLGVYIRYRLDGSLFDLRRLTAKTKTMERLILDALFADDCALMAHQENHLQTIVDKFSEASKLFGLKISLSKTEVLLQPAPDSIPQQPCITIDGTQLKNVDSFVYLGSTISNDNTLDKEIAARIQKASHALGKLRTKVLQHQDIRLSTKLKVYNAIVLPSLLYGCETWTLYCRHIKKLERFHTRSLRAIMRIRWQDRITNLEVLDRADTTSIEAKILQAQLRWSGHVIRMEESRIPRQVLYSELASGYRKKGRPKKRYKDNLKSNLKWTSLLPRQLEAAASNRTCWRALTSNAVQSFEGDRRSRLTAARHRRHRAASASVPTTGVPCPICNRICASDFGLRSHMRVHK
>RTE-3_SP_pol#LINE/RTE-BovB 15-2833 Fragment, via tfasty with BovB_pol, 1 frameshift.  [Strongylocentrotus purpuratus]
VGTWNVRTLYQSGKLENVKQEMMRLNVNILGLNETRWLNNGEFVIDEYRLIYAGGEKHERGVGLLLDPDISKSVLGHWCVSDRVLLVKLQGHPFNISIIVVYAPTADSADEVIDTFYDSLDKAKSQCKSNDIVIVLGDLNAKVGSWYRGQAVGPHGIGERNERGDRWVQWCEGENMVITNTWFKEHPRRVYTWKSPGDIVRNQIDYIAINSRFKRAVKQSKTYPGADCGSDHVPVICTLQCKLKKLKRPKVVKILDFKQLSKPDIRQEFTVQVKNRFELLIDEGEENTWETMRNILVETAEEYVPTKERKRRNKWMTEEILLMMKDRQKIGNRQCKKYRDLDKQIRQKCNEAKESWLNEQCVEIENQFDKNSNVYQRINEISGKKSGCSNPGCIKGKDGSILFEMKDKMSRWTQYIGELFEDSREAMPSFADEVKGEKILKSEVRWAMSKMKKNKAAGPDGVVTEMFEALEEYGVDRLTEIINKIYDDGTFPDELGRSIFITLPKKPGAVDCEQYRTISLICHITKIILRILLLRARSRITPMVGREQFGFVKDAGTRNAIFVVRNITERAVEMQKDVYMCFIDYSKAFDKVKHSELFEELKKLDIYRKDLRLLQSLYWNQFACIRVEGECSEYINIRRGVRQGCVMSPDLFNMYSEIILRELEDENGIQVGGHSITNIRYADDTVLFSESEKDLQRLLNVVVKESERMGLEINYTKTKCLVVSKKSSPKCNLKLKEQIIKQVSSFNYLGSMIAEDARCETEIKRRIALAKSAFSKLGKILTNRTMSMRTRIRVLNCYIYPVLMYGSETWTLASDTKKRLESCEMWFLRRMMKIPWTDKVSNEEVLTRAGVQRKMIREMLIRQLKFMGHITRKEGLENLALTGKIVGRRSRGRRRILWMDSLQKLLEERGVKELGVVLIQKARSRGLWNSMIAKVKRYGT
>RTE-4_BF_pol#LINE/RTE-BovB 2-3082 fragment [Branchiostoma floridae]
TKGKKQTLRIGCWNVRTMTPGLSDDLQEISDARKTAVINNELLRLNVDIATLQETRLADSGTLRESDYTFIWQGKASQETRQHGVGFAIKNSLLDSTEPREKGTERILTLRLLTENGPLNLVSVYAPTLCSQEETKDEFYCQLQTTIQGIPKQEKLLLLGDFNARVGADYDSWPNCLGKFGVGNINDNGQRLLEFCTINDLCITNSFFNTKPQHKVSWRHPRSKHWHQLDLVIVRRCHLSDVLLTRSYHSADCDTDHSLVCCTIRLTPKKIHRSKPPGKIRIDARKTQIPEKVEEFAEALEAALLKKPASENAEQRWSYLRDTLHRTALGVFGRKQGKTQDWFEEYASELNVVIEEKRTALLEHKRSPSQLTLQVLRTARSKVQRMARQCANKFWLDLCKSIQSSAETGNIRGMYEGIKKAIGPTQNGSAPLKSLSGETITDRGKQMERWLEHYSELYARENTINETALDSIETLSVLWELDAVPTLEEMSKAVDSLRSGKAPGMDGIPPEVIKSAKGVLLPELHDILCKCWEEGEIPQDMKDSNIVTLYKNKGDRSDCNNYRGISLLSIVGKIFARVVLGRLQRLADRVYPESQCGFRSERSTIDMIFSLRQLQEKCREQRQPLYIAFIDLTKAFDLVSRDGLFKILAKIGCPPKLLRMIQSFHTGMKGVVQFDGSSSEAFDIRSGVKQGCVLAPTLFGIFFAVMLKHAFGSSAEGVYLHTRSDGKLFNLARLKAKTKIREVLIRDLLFADDAALAAHSVNKLQTLLDKFSAACQDFSLTISIKKTQVMCQGVDHPPAVTINNYELEVVPKFTYLGSTVTDNLSLEAEINCKIGRAATTFARLQKRVWGNQKLTIHTKIAVYRACVLSVLLYGSETWSLYTSQERKLNTFHMRCLRRILHIKWSDYVTNVDVLTRANIPSMYTLLTQRRLRWIGHVCRMPDGRIPKDLLYSELATGTRTRGRPHLRFKDVIKRDLKALDMSINTWESLAANRTLWRQEVKEGLKRGEAKQRLASEQRRSKRKNKQ
>RTE-4_NV_pol#LINE/RTE-BovB 510-3926 (several frameshifts at very N terminus, when comparing with RTE-1_DR) [Nematostella vectensis]
MAKLAYGQTPGATLDSGRGCLVPLDSYRPLKLGSPQSIRCFPPQSACFAGVSRTEVWKQTDKWTATTSPKKKGSNTKWPALIIGSWNVRTMLTGLTTDIRNINGLRKTAIINQELDRLNVDIAALQETRLAGSGSLKERHYTFFWHGKNENEPREHGVGFAIRNNLLQLIEPGPPISERLMLMKLKTDDGTTNLLAVYAPTLTSSSDAKDAFYSELDVIIKHLPKNEALFLLGDFNARVGNDQESWPICLGHFGVDRCNENGQRLLELCSLHHLCITNTFFNVKLRHRLSWMHPRSKHWHQLDLIITRRSQLNNVRITRSYHSADCDTDHALVCSKIQSRPKKLHRARNAAKARINAAATTIPQKVLTFQELLESKLENYQELRTEDHWRHVKDVTYEAAMLAFGKSDRRSEDWFGANIAHLQPLIEAKRLALQNFKLNPTSQSLEALREARRHAKEECKKCANNYWSNLCARIQSAADTGNVKGMFDGIKRAIGPTQIKLAPLKSSSGEIITEKSKLLECWVEHYSDLYGTASFISPSAINHIERLPTLSELDAMPTKVELREAIKVISSGKAPGQDGIPAEIFKCGGDKLLDSLFKLLCKCWELGSVPQDFRDCSITNLYKNKGDRSDRNNYRGISLLCIAGKLFARVALNRLQKLAERVYPESQCGFRSNRSTVDMIFSLRQLQEKCREQQRPLFVAFIDLTKAFDSVSRDGLFHILPLVGCPPKLLNFIKSFHDGTRGTVKCESNSSEAFDINIGVKQGCVLAPTLFNIFFSVLLRHAFGSADEGILLRTRSDGKLFNPARLRAKTKVRKCTIRDLLFADDAALVAHSESELQSLLDRFSNACADFSLAISLKKTKVMHLGSEIAPTFTINDFTLDVVPQFTYLGSTTSANGCLDVELGKRIGKAVTTMTKLSSRVWENKKLTISTKITVYRACILSTLLYGSESWTTYARQEKRLNTFHMRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCRMENGRIPKDLLYGELAHGSRPVGRPKLRFKDSCKRDMLAIGLDVDNWEKLAEDRSRWRSECAAALNSGELELKREAEERRQRRKASEIRTGSNPSPTSVLVCRSCGRTCASRIGLFSHGKKCQRSSR
>RTE-4_SP_pol#LINE/RTE-BovB 2-2613 Fragment, via tfasty with BovB_Plat_pol, 3 frameshifts. Replacing the smaller fragment gi|72030844|ref|XP_786555.1)  [Strongylocentrotus purpuratus]
KRRGVGFIIEKATAKCVLGYNPAHPMNISIIQVYAPTADAPEEEIADFYEMVQDVVDSIPRKDFLMILGDWNAKIGKTRENLKYIGNYGLGIRNERGDRLEEFCTANDLVIGNTLFQHHKRRLWTWTSPGDRARNQIDYIMVKKRWRTSLQNVKTRPGADCGSDHQLLVAKLRLRLKAKKCDSAPTRYDVENIPSQFSVEVKNKFELLLRNDEAEQTPNELWEDMKETVENAAKNHIPKKRKRKQPWISNQTFDIADDRKRAKAKHNRGEWTRLNKAVTSSVKEDKRKYIEGKCEDLERHKNNSKAAFAIVKEITKKRIPRLDVINDENGKTLTENEDIKERWVQYSTKLFAAQEQVDTQWEESDEMEPPPLRSEVELAMKQLKDGKSPGFDNLTSEMWKATGEEGTDLMWRLCCNIWNSREWPKDWCRAVFIPLPKKGDLKECANHRTISLICHASKILLKVISRRMKIKLQAEISDEQAGFREGRGTREQIVNIRNIIEKCREHRHPLYLCFIDYSKAFDCVSHSQLWNTMAKMGFPSHIIELIKNLYHDQEATVRTSNGNTEWFGIGRGVRQGCILSPNLFNIYSEDIMRNALEGFNGGVKFGGKKITNLRYADDTTLVCSSREELIDLLNRIKQASEEKDLLLNTKKTKIMVVDRDNNNTDFTVAGNKIEVVNRFEYLGSIITNKGESTTEIRRRMAMARSTVQNMSHIWKSRGLSLSLKVRLLQATSFSIATYGSESWAMTKNDRKRVDAFEMWCYRRLLQVSWKDKKTNVWVLEKIGTDLTIRRGIMERKLNYFGHIVRRSEGVEKQILQGAVEGKRGRGRPPISWTDDIKKVSGQGMKGATQMAGERVAWRALVKTTAALYSAT
>RTE-5_BF_pol#LINE/RTE-BovB 2-1540 fragment [Branchiostoma floridae]
NLASEVEEAIRTLKPGKSPGVDNIPGELIKHGGPTMVKVLSALCQKIWEKKEWPKEWTQSLIIPLPKKGNLRACQNYRTISLISHLSKVMLRVILNRLKPKVEEILTEEQAGFRAKRSTTEQIFNIRLLVEKHIDHQREIRHNFIDFKKAFDRVWHEGLWKVMRDYNIDESLVAIIKSLYDNATSAVLHNNQLGEFFRTTVGVRQGCLLSPALFNVFLENIMQEALSGFESSISIGGRQLSNLRFADDIDLMAGSEDEHQELSTRVENSSAAYGMEVSTSKSKGMINSTLSDARTSVTMAGEVLEDVDFFKYLGSILNRDGTSTQEIKVRIAQASAALAKLSPILQNKNISLPVKIQLYRTLIVSIFLYGCESWTTTAETERRIEAFEMKCLRKILGISYLQRQTNRSVRHQAEAACGKQESLLSTVKRRKLNWFGHICRHNSLAKTILQGTIAGGRKRGRPRKTWLDNIKTWTGLSTEQLIRGAEDREKWARITTTGCRGAPTTTEVTGRE
>RTE-5_BM_pol#LINE/RTE-BovB 692-2551 + 2553-2993 (ca. 900 bp internal deletion)  [Bombyx mori]
MTFGAWNVRTLLDRDGNACPERKTAIVARELHRYNVDVAALSETHLADEGELVEVGAGYTFFWKGTAASETRHSGVGFAIKNHLVKRLEEYPVHISDRVTTLRVHLDKDNYLNVISVYAPTLDKSDDIKDKFYGEVTLCLDSINAREQVLLLGDFNARVGRDYEAWPGVLGRHGVGNMNSNGQLLLSLCAQYGLAITNTMFRLAAKYKTTWMHPRSKHWHLIDYAIVRQRDFSQVQITRVMRGAHCWSDHRLIVTKLRLRLRRPRRSPMKKLASLDIEKLRDPEVRKNYAEALSKKLLSVNETGDVDADWGTLSSHIMDTASIALGRKSRRNEDWFDGNDGVLRAALDKHRDLLRQHRRRKGSVAAVKASDLELRKLSRQIKDKWWQDKTSHMQWLTDTNQLGEFYSEARKLMGTSNHAKVPLKSLDSRHLLTSKEDVLKRWAEHFNALLNVDRSADLQSIALMPQLPLALELDEPLLRDEVVAAIRQQKDKRAAGADLIPGELIKYGGEELYTLVWELFVRMWEEERVPDSFKVSRITALYKNKGDRSDCNSYRGISLLSAPGKVFARVLLNRLKDLSEKILPETQFGFRPDRGTCEAIFSVRQLQEKSREQGRQLYLxxxxxIEAYLMRRQLRWCGHVSRMTEERVAKRIFFSELQDGKRKHGGQLLRYKDVVKRHMKRCDIEPSQWERLAAQRPEWRRMVNGKVREFEDQRKADLDYKRDQLKARPPAAITYNYENGVLTCPQCARSFAAKIGYISHLRAHERQIDG
>RTE-5_NV_pol#LINE/RTE-BovB 400-3537 [Nematostella vectensis]
MVRSELPNAGSNVARTNKVRADHLPLRMTVKSKLGRRKRLVLAEWNVRTLMDRSRSERPERQTALIARELSRYEVDIAALSETRLANYDSMVDCGYTFFWSGKTEEERRESGVGFAIRNQITRIMEEDPTPVSDRIITMRLPLEKKVYATVISVYAPTLTNPDENKEQFYSQMREVLSKVPKKDKLIVTGDFNARVGCEHEKWEGVLGHHGIGKCNSNGELLLTLCAEHSLVITNTIFRHKEHHKVTWMHPRSKHWHLLDYMITRKKDLNDILDTRVMRGADCATDHQMVRSKVAFSLRRPHARTKAKPPTKLDVRKIRSGDMKAKLQHEMNEALKNLEEMDGSEIEAQWNTLKTVVYETAEKVCEKPKRKHQDWFDENDKHLECLLEKRNAARANMLQTNTRSNKNKYTAARRVLQQYTRKLKTDWWERKAESLQQASDVNDMKGFYNGLREVYGPAKRGSTQLTATDGCTILQEKSEILNRFADHFDQLLNVSGLVDEGALNSLQTRPEVVCLSEPPDIKEVVDAIDATQEGKSPGKCGIPAEIWKHGGTEIVSKLHKLVLKVWSAENTPHDWRDASIIPIFKKGSRRDCGNYRGISLLSIAGKILSRVLLNRINRHIAPVILPESQCGFRSGRGTMDMIFCLRQTQEKCIEQNMPLYAVFIDFSKAFDTVSREALWQVLVKFGCPPKFVNVIRSLHSGMKASVSQGGNDSKQFDVSNGVKQGCVLAPTLFSLYLSAMLEIAFKDCVDGVSIQTRHNADLFNVAHFKAKRKTCQVIVREMLYADDSALVAHDVESMQRLVDRFSSAAEQFSLKINIKKTECLFQPVKRQTLTQFPGEIHVRNETLVQTKDFVYLGSTISDNARIDNEITFRKGKASAAYAKLRERLWDNHHVSLKVKGKVYRAVVLSALVYGAETWTVYRSQVKNLHAYMMRHLREIMKITWMDKVTNKEIYKRTGLRSMADTLIEKNLRWTGHVHRMDTDRLPRQLLYSQLTTGTRNQGRPRLRFKDVVKRNLKWRDISSNSWQTTARDRPAWRVKIKGPTQ
>RTE-5_SP_gag#LINE/RTE-BovB 329-1063  [Strongylocentrotus purpuratus]
MSIANAFDLLEVEGVRDGDVSFRLDDVVQGAMEHIPEGGINRQLVGDVVKAVVAALLPVMQSIAAQVSPKVSVQKVQASLQKHDVRLDEMEQYSRRDNIVLRGVPEKGRTPMMSSTGIKVVGADISTSHRIGRPQPNRSRPIVARFVRRDLRTDILRNKRKLRDSQHKDIMVSEHLAPGRAKLLHAVKQDDQVERVWTIDGKVHCILKGDPRKQIIHGPDDLFRRLGWSEDRLKQSGLFTEVSS
>RTE-6_BF_pol#LINE/RTE-BovB 436-3450  [Branchiostoma floridae]
MSSAKHSIGLAQEGNNRGTTAQPAIKLPTEGTVIGTWNVRTLHACGRLEELTHELDRYTWDILGLAEVRWTGFGETTTEEGHKIWYSGEEKQHRHGVAFIVRNEISNCVISCTPVSSRVISIRISAKPHNITIIQVYAPTTDHEDEQVEQFYEELENTIEKAPKKDLLVVQGDWNAKVGTDAYQHWAGTVGQYGVGETNDRGLRLLEFAQQQRLTLTNTLFPHKLSRRTTWHAPNGQVHNQIDYILTPQRFKSSINRARTRTYPGADIGSDHDLVLTTLKLRLKCQRCPRNPRIRFNLEKLKDPEVVEMFQAQIGGKFAALNVLDTDVDELAGNIKEVLMSTAEETLGRHRKKNKPWVSDDILDLCDRRRELRQQKYTSQENAEQYRQAHKTVRRKMREAKEKWIEDQCTEIQHGMASGNSQKAYETLKTLTRTQQPRATVIEDSSGNLLTESTAVLNRWTEYCDKLYNYELQPDTAKLNNPPWAERVPEDLPILRDEVADAVRNMKPGKSPGIDNIPAELLKHGGEVVVDKYSELCQKIWQEKKWPKEWTQSLVIPLPKKGNTRQCQNYRTISLISHPSKILLKVILKRLKSKAEELLAEEQAGFRPGRSTTEQIFNCRLIIEKHLQHQRDLFHNFIDFRKAFDRVWHDGLWWVLRGFGVEEGLIQSIEALYQSASSAVFLNNKVGEFFRTTVGVRQGCLLSPVLFNLYLEKIMQDALYDHHTSISIGGRRICNLRFADDIDLLAGSNTELQDLTDKLTESTGSFGMEVSTEKSKVMVNSRDETHAVILMNGELLEEVGTFTYLGGTITKDGTSETDVRRRFAMATSAMARLSRIWKSNNISFSVKFKLYKTLVVSILLYGCETWTLLAATERKIRAFEMRCLRKLLHISYYEHVTNEYVREQVRSLVGPQETLLATVKRRKLQWFGHVTRHNNLAKTILQGTVEGGRRRGRQRKAWQDNIADWTGLSLQERITLARDRRTWRQLSIFMSTLSPQRPGGQGTR
>RTE-6_NV_pol#LINE/RTE-BovB 224-3544 [Nematostella vectensis]
NEEGTRKGVLKIACLTTPGSVYRDWLGSPSCGRNTRKLKTKWLPITFGAWNVRTLLNRDTAVRPERRTALVAKELSRYSIDIAALSETRFAEEGQLKEPTAGYTFYWSGRGKDERREAGVGFAIKNELVGKLTSLPKGVNDRLMTLNLPLKGKKQATIISCYAPTMTNSDDTKDKFYEDLDSIISATKQQDKLVILGDFNARVGSDVESWGEVIGKHGVGKCNSNGLLLLTLCARHGLLLTNTMFQLPTRNKTTWMHPRSKHWHLIDYAIVRRCDLHDVLVTKSMCGADCWTDHRLILCKVKFYIHPPRRPQGKKPAKRLDVQKLGNKDVKERVTKELEEKLDTLAFNTEDIEQDWALFKDTIQSTCNNILGPKTHCHQDWFDENNEEINRLIDEKNRLLKVYLVHNSQANLDALHKAKHAAQVKLRLMKDKWMIQKTAEIQGFADTHNVKEFYKAVRTLYGPQPAGTAPLLSADGTKLISDKPGILDRWAEHFESVLNRPSSVSNEAIDRLPQAEIDATLDNPPTFEETVKAISLMSPGKAPGADAIPAEIYKACGPIAVNKLTELLQSMWQKETIPQDLKDASIVHLYKRKGNIQACDNHRGISLLSIAGKILARILLNRLLRHLENGLLPESQCGFRAGRGTVDMIFAAKQLQEKCQEQHTALFTTFVDLTKAFDTVSRSGLWTIMGKFGCPPRFTSMVRQFHDGMQAHVLEDGNQSAPFQVTNGVKQGCVLAPTLFSMMFTAMLADAYSDNDPGIDIKYRTDGGIFNPRRLRAKTKVHITRLRVLLFADDCALNANTGLEMQESVNKFSDACNNFGLTISTKKTEVMLQPAPNTPYMEPEIYINSQRLNPVEKFTYLGSTLSRVIHIDDEVNARIAKASASFGRLSKTVWNRRGISTETKLGVYRAIVLTSLLYACETWTVYQRHARKLNHFHTICLRKILGIKWYDHIPDTEVLDRANMFSINTMLQQAQLRWAGHVRRMSDTRIPKQLLYGELHYGTRSKGGQKKRYKDTLKVSAKQFGIDPDNWEELADDRTHWRSVVKKGAKLCEDKRVNQAKHKRHLRKTRAASVTVPTGPVCPECGRAFHARIGLVSHLRTHNTQT
>RTE-6_SP_pol#LINE/RTE-BovB 154-2967  [Strongylocentrotus purpuratus]
MMRQTNKNGYRPGCRPGEQEPRPPVTNQAEVGKLNTGFKSKSRIKIIDCKAATLISSFNVRSLKSKEKMGELTALAEEKRIDILCIQEHHIYHENVDIQMKDMGKGWVLAMSSGTKNTVNSTVGGVGILMSPFAYKSLEYLEKVSSRILLAKFSGNPAPTVITCYSPTNCSPDNEAVNFYSLLSDVIKKIPQHNMKIICGDMNAQVSSADSKGFTFGNRTNRNGQYLLNMTFECDLIACNTRFQKAKEKLWTFTYPNKSQAQLDYILVNKKWRNSVKDCQAYNSFGPLNSDHRIVSTKMQLSLRSNKKVKAKSNLPHDWQLFKSDCSIKEAYTVEVNNRFEALYQDIENPTANEIYSALIEAHEGAATKYVPKRKGKKKRVPWENEKIREKRKCLKVAYNKKNGAPTAEHAETLDKAKKDLQDAYDEEQSNYIAQKCTEIEIGAVQQQTRKVWDIVKEITGKXSTPVDQLRGKTXQERLNQWKDHFSNLLGQPPPDNNNPVSKFTIAELKVAVTSLSNNKCPGVDGIPAEVWKSGALDQQLLEVCNRTLIHGEKPDLWSRSIIIPVPKKGDLSTPQNYRGIALTPIAAKVFNKMLLNRIRPXLEPLLRKNQNGFXPGRSTVXHILTLRRLVEGIKAKHLTAVLTFVDFXKAFDSINRKKMLKILXAYGIPHTIVTAVGVMYKDTTAQVRSPDGETDSFTILAGVLQGDTLAPYLFVIALDYALRTAXEGFEDLGFTLQERKSSRYPAVMITDTDFADDIALISDDLEKAQELLXQVESAASQVGLQINSTKTEFMLRNLREGEICTADXTKSKQVQNFQYLGSWVISKQDLNIRKAKAWTALNKLTAIWKSNLGRKLKVRFFTVETVLLYGSEAWTLTSSLEKQLDGCYTRLLRAALNVNWRDHMTNIELYRDITXISARLRDRRLRFSGHCWRSKS
>RTE-7_NV#LINE/RTE-BovB 280-3324 [Nematostella vectensis]
MTRRGQSHPDAPGLTKPLVHPKHAMRIGNWNVRTLYSSGNVAQAAREMGKRDIDIMGISETHWTGQGKMQLRDGETMVYSGREDNIHREGVGILMSKNAAACLIEWTPWNERMIQARFYSRHIQLTIIHIYAPTEDADEHLKDEFYTRLQEVLDSRNQHDMLIITGDMNAKVGDQNWDYERVMGKHGLGVRNDNGERLCELCDLNELVITGTLFPHRTIHKATWISPDGKTKNQIDHVLVNKRFRNSVKDTRVFRSADVGSDHYLVCATVKLRLRKDPKRKGNIRVKYDTSKLTEKEVRNTFNIKLRNRFQALEQEDEEERGEEVVDAKEEVERDFTIMKKALLEVAETVLGKPRKKNKPWISGESWSLIDERQQMNEKILSTRSERVKGQLRKKYREKDREVKRSLKADKKKWLEEIASEAEKAARSQHMKTLYGLTKKLCNERPRHSTAVLDKDGNLLSKKEEIQRRWTEHFREVLNREQPDNPIEPEDEVEFEFGELIEEISVNEPTFGEVKDTITTLKNGKSPGIDNITAELLKADPEFSAERVHKLLVKVWRHETIPNDWKKGLIIKLPKKGNLKECKNSRGITLLSIVGKILGRIVIDRIRNGVDKKLRKEQAGYRRGRGTTEQVFILRNIIEQVNEWQATLYVNFIDFEKAFDSVHRESLWVIMEKYGVPEKIIRIVRLFYEDFQCAVEDQGETGEWFNIKTGVKQGCNMSGFMFLLVMDWILRRSVGKGENGIRWKFTSKLDDLDFADDIALLSSTKHHIQEKTAKLDGEARRAGLKINLEKTKMLRINAKQHGNIVINGKEIEDVSEFTYLGAKVCREGGGMKDLRNRLSKARSVYTRLKRIWNSKKIMRRTKIKIYKSLVLSVLLYGCETWKMNKKDDKLLDVFQQKCLRRILKISWEDHVTNEEVQRRAGVHQLSSEVKRRRWKMIGHVLRQGRENDCSVALTWTPEGRRKQGRPKTTWRRTVERERGEAGWRNWDEVRSKAADREKWKSTVKALCATRHEEDR
>RTE-7_PPac_pol#LINE/RTE-BovB 1-2313  [Pristionchus pacificus]
SILNTHFKKRKSQLLTYHSGKHHSQLDYLLVRSKDRRLVKDTKVFPSECVASQHKPVICDVWMMKDDMSGIKKKELMKVERRVKWWKLRDKEERDKFAVEVAIRGVLSADPLDASTNVDSLWNTMTGRMIECAREVLGETKGMKRKSDDRWFWSDEEVKKAVKEKRNAYWQWHRRKSKESWEAYKEKRRDCRRVVAIAKMKTFDDLYEKLNGPDGEKIVYRITKARDKESKDIQEVKSVKDEMGNILREEKEVKCRWEEYFRELLNVEKGQTRLNEGDKVQGVIPEWNELEVNLALSKCKWGKAMGPDGIPADCWKSIGDFGVRWLTRLMNRILEDGKMPDAWRKSEIVLIYKGKGDVRECGNYRGIKLLSHSMKLYEKMLDRRLRECVTLNESQFGFIPACSTAEPIFALRMLLERHYEFGMPVVAAFLDMEKAYDRTPRRQIWRSLRDRAVPERYIDLIKDTYEGASAMVRTPCGKTNEIPIQVGVHQGSALSPLLFITVLDSVLEGLICEAPQTMMYADDICIVGTDVKEVENGVRKYQTRLNEAGLTLNTGKTEFIGFECGNGLMTDVNHTAIKRVEQFKYLGAMITVDGSAEKDIEHRIKCAWMKWRGCGGVMNDRRISLKLKGKVYKSVIRPTLLYGSEMWPISERQMDKMMVVEMKMLRWACGLNVRDRVRNEAIRAMTKCAKLEGKIRERRLRWFGHVKRREKEHVCRRMMTYTIRGKRPVGRPKLRWSEMIKQDITQLRLTERHALNRDLWKTKTSFPDPV
>RTE-7_SP_pol#LINE/RTE-BovB 466-3439 via tfasty with Expander1_Cis_pol, 1 frameshift.  [Strongylocentrotus purpuratus]
MAPSPGGCYTRQHSGRGAKNLPVFSRLPSSLQVQVAEGTAYNPRKKTSENTAKKRTTEDPSRKSKTAPSTRKANKVQSRRASVSRPIVTMHPARQGKLPDMTKDTPGGVKVGEKMKTRGLSIAAWNVRTMKTTGHWDILMEEARRFQLDILGLSETHLTDAETLITKDGYTFLLSSRKDNRSREGVGIMISPNILHCLLGYEAVSSRMITAKFQMKGGVMNIIQVYAPTSGHSDQESDEFYDLLQLHIQKIPKKEKLIIMGDFNAKIGSDYKTWAPALGKFGLGVMNSRGEKLMEFCMIHRLAVCNTYFQHKDCRRATWTSPGGLYKNQIDFILVYQDDLKSVKNSRSFCSADIGSDHNLVLANVQFQPPKARRIKSVQKSYDVGRFKNPSVAEEFQARIGGAFEPLLLLEDTDIDELWLKFMNATNEITKQVVGIRRGKQVKHLPEHVRDACELRRKARVTKLNSPHNNHNIMKYRRLNKKVKYEVKKWKRETLKKEVEEMEAAQARNDSHELFKKVRKLAGEKEKIQPAAKNKEGVLKTAPGDVLDCWKEHFSTHLNTEFPRDTNTLRNIPEPPPTENQTSPFTIEEVKAAIKALKNNKATGFDNIAAETLKAGGPAMAQILLKIINTAFTQGKTPVEWSKGLITPVHKKGDKLDPANYRAITLLSVPAKVFCRMVLSRIQEIIEEHLSEEQCGFRSSRGTTDAIFIVRQVLEKAKERHIPIHWNFVDFVKAAFDTVWRDALWKCLLSIGVEKNLIDLIKYMYDQTKCAVIVNGKVTEWFQVKTGVRQGCLLSPSLFNIFLEFVMADVKNLDSGVQMGGIRINNIRYADDTTLLELIYDKLQISTNKLVEVCGKWGMKINTAKCRIMTIDDEETSIDGNPIEKVEDFVFLGSVVPSVTKDVKRRTNLASWAFGRLRNNIWTNQDISRALKVRIYNALIRPIATYGSETWTLRKTDRDKLETFEMRCLRTIAGVHLLDKIRSVDIRKSLK
>RTE-8_BF_pol#LINE/RTE-BovB 287-3397  [Branchiostoma floridae]
MESLHHLKFRVGSLNVGTLKGRSSEVVETLTRRRVDLCCLQETRWSGGLDANQARFVKGKDSRYKFYWCGNKQGQGGVGIMLAEKWVENVFEVQRISDRILLLRLVIGKSVFTFLSVYAPQIGLSDAEKERFYDQMQSTIAKIPASETVFPIGDWNGHVGEDAQGFEEVHGGHGFGERNTEGERILEFAVANDLLIGNTLFVKRESHLVTYTSGNHRTQIDYILFRQSFRKAVSNIKVIPGEECARQHQLLVCDFVVRTPAVRKRKFTPRLRTWKLRDTAVAREFRETFVSKVESVTTDATGGEVEDLWSRLKTPLLEAAASVCGYSKNHLWKPETWWWDDHVEEAVSKKRARFKVFNSLRKQGKTAVAMVAKTAYNEAKRLAKHAVWLAKSAAEKETFAVIDPQGADVYRVAKQMERSNQDVVGEMCVRNDAGELSLNDEDKMKAWVEHYNRLLNVEFDWPMDELPEAAPVVGPAPPVTTEMISKALSKMRFGKAVGPSGINAEMLKAAGEEGIELTRQLTEAVFRNGTVPVEWEKSIILSLYKGKGEALDRGNYRGLKLTDHVMKLLERVLDSAIRKMVNIDDLQFAFVPGRGTTDAIFIVRQLQEKFIAANKPLYFAFVDLEKAFDRVPRRVLWWALRSLGVEEWAVRVIQAMYANARSRVRVNGQYSEEFGVGVGVHQGSVLSPLLFILVLEALSREFRTGVPWELLYADDLVIIADTLEECIARLKAWKSGMERKGLRVNMGKTKIMISGQGLNKLKETGSFPCAVCRSGVGANSIQCTVCNFWVHKRCCGIRGSLLAVQNYTCPRCRGEARPLDGRPTTQVTVDEVVLDVEASFCYLGDMLCAGGGCELAVTTRSCVAWGKFKKLLPILTSRHLPFKTRGKVFDCCVRAAMLHGSETWAPTTSDLQRLRRNDRAMIRWICGVKPRDETPSSSLLDKLGILDIISVLQSRRLRWFGHVERSSDCINKITKLKVSGNRGRGRPRKTWRDCVSRDLKECGLTGVDPLDRAKWKRSVKTGRLLPTPASGNPAAV
>RTE-8_SP_pol#LINE/RTE-BovB 435-3587  [Strongylocentrotus purpuratus]
MRNSMKLHTGSVVFRVNKDRAVRSGLPSTVPSMLGXKQQQQKDDTSGITTMTFGQWNVRTLLDREGTGRPERRTALVAMELEKYRIDIAALSETRFSESGRLDDMGYTFFWSGKPDGVRREAGVGFAIRKEILAKLTEMPKAVNDRIMTMTVPLTKKGNATLISVYAPTMTSPDETKENFYNQLRRTLRDTPRTDKLILMGDFNARVGRDYEKWQSVIGRHGIGKCNTNGELLLALCSEFELLLTNTVFKQREEHKTTWMHPRSKHWHLIDYIITRQRDRMDVHSTRTMRGANCLTDHQLLRSKIAFALRSKRRKQGATKLAKLNTDRLHVNTQRLNLEQDMEKALTNWGVQEGMTVDQTWASLSKVVYETASNTLGKPERKHQDWFDPEDSELLILMKKRDETHQRVLQTRSTRSTTTAYKEACRHLQRYTRKMKTTWWEKKAEDLQRSADNNDMKSFYTGLKEVWGPQTRSTVHLKSLDGNTTFSDNKRVLERWSQHFETLLNQPGDIEPAARDRINQRPVVTALDDIPTRKELNLAIASLGDGKAPGVDGIPSEIWKHGGATLTNSLLMLIQQAWAEGSVPQEWKDANIVTIFKKGDRTQCGNYRGISLLSIAGKVFARILLNRLNAHITPDILPETQCGFRNNRSTVDMIFCLRQLQEKCIEHNRSLYVVFVDFTKAFDTVGRTGLWQLLRKYGCPEKFTGMIESLHTGMMAKVKEAGETSDSFPVSNGVKQGCVLAPTLFSIFLSAMLEEAFADFEEGVYIQSRQDADLFNVAHFKAKTKSTQILVRELLFADDSALVAHTPEQMQHVIDVFSSASKKFGLQINIKKTEVLFQPGTDHREEEEILVDGTALNQVDDFTYLGSTISKDGRIDSELVKRMSKASSAFGRLRTRLWNNHHVSTRVKCKIYRAIVLSTLLYGAESWTLYKSQVKKLHAFMMRHLRAIMRISWKDKVTNKEVLERANLPSMEDLLIRKNLRWTGHVIRMPSERLPKQVLFSQLPAGERGIGRPRLRYKDTIKRNLKRRQIETKTWTTAAGQRAVWRTAVK
>RTE-9_BF_pol#LINE/RTE-BovB 174-3284  [Branchiostoma floridae]
MDPQHVSYAARWQPHQLTTPASGPLPVMAELNHVTTPTGSIRTDLSRNRPLRATDKRVLNFRNKVRVATWNVQTLLRTGYATLLSHELTKYDLSLAGICEVRWPGSGETIVGDHTFIWSGPEDRTGLYGVALAIPSRLRGSLISWKPISDRLLTARLLHTHGKMTVIVAYAPTEVAEDTDKDAFYDQLQEAVQDAPPHDITLVLTDANATLSANTHPSAQQDAMGPISVDTTTNDNGNRLLELCRATNLCIADTWFPRKRIHHWTWYSPDGRTRKAIDHILISGRWKSFITNCRVYRGAQLGNTDHRLLMAHMRLKLKADPSSKKQVRVDSARLKDPLIQEAFSCAISNRYNALAMDATTDWQLFKEEVLKATEETVGKSRPSPKQPWISPETLDIIDSRRAARLRGDLTEYRRLNGIRNIAIRQDREKYWTDQAAKLEAAAERNDQRQVYRLLRQAKAGPRQRSFLIKDSVGNIISTESDCIHRWKEHFSQLLNHPPVPEDPTLSEAASATDATNADCPVTPVTPDEVKAALGKLKNGKAPGICNITAEMLKAGGDHMIQWLTQIVNHVWVLETLPDDWRRGIILPFWKRKGDQLVCSNHRGITLLSIPGKLFTRILLTRAIPAIRSRRRLQQAGFMPNRSTIDHISALRLAIEKAREFRKDRHLYIAFIDLRAAFDTVDHASLWKILRLLGAPQKTISLFQQLYNSAESCVRVNGKESEWFSINSGVRQGCVAAPDLFNCIIDYLMSRVCERVPGVSFGQYNLADIEYADDTSLLADDLTRLQDALTVYDEEAKKLGLSINWGKTELMHVGDGPDPEPFIFSGCPVKFVSTFKYLGSIISKTGDLKPEINQRRAQASAVLQSLWKPLWRHRHVSLQTKQRVYNSSVVSVLLYGSETWPLSNTLAARLDGFDSRALRRITCTRWQEHVRNSDLREQTGQPPASSLAAMRRVRWYGHVLRLPPEHPTRALLDFDPKQAGWRRPRGAPRTRWMDVVTRDLRSINITPQQAQPAALNRGRWRTLVHAVGSTHHVQEDE
>RTE-10_BF_pol#LINE/RTE-BovB 7-3147  [Branchiostoma floridae]
MEAQHKQREMDGGLGTSRRCDPALPTTGVEGGAGVTDPRTENGVLDPNPDDGDHYGDQTERPSTDGRESTGRINLRKNIRVATWNVRTLHQAGRLSNVLREMERCGINVLGVAETHWTGSGFFSTTDGEMVIYSGGEIHRAGVAVLLSKAVAKSMISYKAVNERILLVRIKASPFNIYMVQVYAPTTDAPDEEVERFYEEVQQLLLECPSQDMALVLGDFNAKVGADRLEDDVCGPYGLGTPNDRGERLVEFCQENGLFITNTAFKHHERRRYTWLSPGCRYRNQIDFILIGKRWRKCVTNSRAYPGPDCGSDHNMVGASLKLKIKKCGRSKRRTLLNLEALESSAVRETFNVEVQNRFEALNLLEEERTPDEFSTSFTEAIKAAAEKVLGKAPRKANHPWISQDTLDLIDRRRKLKTQRNTESGDLLYREVDKQVQRQARADKERWLEEQCAEMEKGLGSNSSLRKSFSIIKSLRRGFQPKQRNIRSEDNRVLTDLQSILQRWKQYCEQLYQDNTLHSVTDDEQDTHSEETVDEHFPEILESEVEFAIKRLPKNKAAGVDDLPGELLKTDNPTVTKALCNLCNKVLRTGEWPTDWVRSVFITIPKKPGTTDCSEHRTIALISHVSKILLRILLKRMEGVADREFAEEQMGFRKKVGTRDQIFNIRILMEKARESNVSLYMAFIDYKKAFDSVKHNILWRVMERMGVPKYITNSLRQLYRRQQAAVRVEEELSDWFEVTKGVRQGCLVSPACFNFYSEAVMRESADELSWIGVNISGRLINNLRFADDIGLIATSPERLQELLDLVHTVSMEYSLEISTKKTKVMAATKQPTELKIFCQGVQLEQVPTFKYLGAIIDGSAGSSREIQARLGAARTALGSLESIWKDRALRKSTKLRVLKALVWPVVTYGCEAWTLHAKDTQKIQAFEMKCYRKLLRVSWTEHRTNDSVLAELGITRTLLNLVKRRKLQYFGHVTRAQNISTHILQGKINGTRSRGRPRRRWSDDIRDWTGSSLAVCTQTAKNREEWRRLVLETTIVPDPPDEDGTR
>RTE-10_SP_pol#LINE/RTE-BovB 2-1330 Fragment.  [Strongylocentrotus purpuratus]
ICANSKKPKASVCEDFRTISLMSHVTKLLLKIILNRIKIQIDNEVGKEQFGFRPQSGTREAIFCMRMMTERYIAVNKEIYVCFIDYSKAFDKIHHDKLIESLQKINLDGKNIRLISKLYWEQTAAIKINNEITGYTKIKRGVRQGCVMSPSLFNLCTELVFREISDMKGVSIGGVNINNLRYADDTVLCAENEADLQHVLDIVKVKSEEFGLSMNVKKTKSMIFSRTENKPRICLKLDGHIIEQVSNYIYLGQNITDDARCEAEIKRRIEIARNTFLAMKGLFTNRKVKFALRLRLVNCYVWSVLLYGAETWTINKAMENRITSFEMWIYRRMMKISWKRMKTNKEILHMAGRKQIALVGLVKERKIKYFGHVKRHQSLLKDVLEGRVEGSRPRGRPRINWEENVKNWSGLKLQECTRMAEDRVKWRDVAINLRTGRRYLDR
>RTE-11_BF_pol#LINE/RTE-BovB 537-3581  [Branchiostoma floridae]
MMANQYNTRVEVPNRTLPAELDSQESQDGLPPNLQGRGRLDYSSSRGNRMVNCRSITTISTLNVRTIREAQRREELSTNLALYDIDALGIQEHRIAHEEEVRYESIHGNMLITTSASRNRSGATVGGVGILLSPKAYNSLAKVTPFNERILIANFQGNPATTIIVTYCPTNVVDEETTNEHYDSLRRAIQSIPAHNLLMVVGDFNARIGSEEAKYTFHSETNRNGKLLLELSKEQGLIISSTRFQKKAGKLWTYMSPGGNRYQLDYILIRKKWQNSMLNVEAYNTFASVGSDHRIVSARVRLSLRKKKSLPRRKQYDWGALRRSEVLQQQYAIEVRNRFQPLQEENETATERYGRFIAANEGAAEKTIPIKKREKTAKYSSDPRVSQARDEVNRRYEVFVENTQEKNRQELKRARRRLEETYTRVAEEDLLQKIQEIERTHENSKHGQSWKLINEITNREATKKSQLEGNSQEERVQSWYNHFKNLLGNPPEITCEEEEIPTILGDLGIKEGPFDIEEYEMARKSLVEGKSSGEDGIPPEVLKRCKDLDEIILDFCNKALLEGEKPEQWSTLNIVPIPKAGNLRLTENYRGISLSSIVAKTYNRMILNRIRPVLDKHLRRNQNGFRVGRSTVGHILAIRRLIEGIKSYNLTAIITFIDFKKAFDTIHRGKMLKILRAYGIPDQLVEAIASMYKDTKAKVISPDGETELFELYAGVLQGDTLAPYLFVIVLDYALRTAVEGREEELGLQVERRRSRRIGPKVVTDMDFADDIALLSEAIQQAQELLGCVESSVGKVGLRMNAGKTKYMTFNIPTPYCLKTGDGCTLEEVKDFKYLGSRMESSAKDITARKAAAWLACNKLKKIWRSNLSRELKVRLFLSTVESVLLYGCESWTLTTKLEKQLDGCYTRLLRTALNVHWSQHITNKDLYAGIPKLSDKIRTRRLKFAGHCLRSKEIVADLVLWTPRHGKRRPGRPTATYLDMLRKDTGLGVDNLHQAMTDRDIWNAIIARDQKDSS
>RTE-11_SP_pol#LINE/RTE-BovB 2-1769 Fragment, via tfasty with RTE1_LA, 2 frameshifts. 80% similar to 72094933_Spu  [Strongylocentrotus purpuratus]
QMDTRCKKVETSRQATKSKAVYTTIKQITKKSNIRMQAVKSKDGEILTEMKDVKERWKESFEELYNHQNQTNGEAPTQMASLDPVPDILRDEVEFAVRKLAEEKGFDSITGEELKAAGSTGITILHKIWREETFPADWGKAIITPIYKKKQINCGNYRGISLLSHAGKVFVSSSSKWIMKKTEEVLSEAQAGFRPGRSTMDQLFTLRQIMEKRLERNQSLLCCFIDYEKAFDSVWQEGLWKAMNFFGYSSKYIHLLQALYQQSNSAVRVNGELTDWFKTTVGVRQGCALSPQLFNILLEAVMLYAIHDTKIGVRVQGQLINNLRFADDIVLIADNDRDLQTIVDLVHQSSSNFGLKINITKTEVQAISKQPQLLNINIGGEQLKQVDKFTYLGGTISQTGSCSEEVKHRIGKAIGAFQALKKIWASKDIRCSTKVELYKVLVLSILLYGAETWTLKKVDENRLHTFEMACLRRIMGVTRFDRLRNTHIRTQLNMEETIIDRVATKRLRYFGHINRMNSKRYPHILLNGNVHGKRPRGRPAKRWTDCIKADCNNRQVDSLTKATRLTEDRKVWQAIVKQKPSYIPVMVWTA
>RTE-12_BF_pol#LINE/RTE-BovB 1-2898 fragment [Branchiostoma floridae]
IATWNVLSMKQEGSALLVANELARLDITVAGLTEVRWPGSGSCRANDYTYLWSGREDGLHRQGVALALAPSAHKALSFWKPINNRLLLARLRHRHGMISIIVAYAPTDVAPAEEKDDFYSKLSALVANISRHDIIWVLGDFNATTGTNTTGYESSLGPYGTGSRNDNGSRLLEFCACHRLRTERSFFPHKQIHCMSWISNDGHTTKEVDHILTNSRWHTSSNCRVYRSAQFGNADHRLLSMTVALYLQKDPKSAQQRKFDIARLQSPDVSADFQLELHNRFEALLDISDEDHGDPAKIWDGFKHNLTEAATKTVGFTRSRKKRAFLSMETLKVVELRRQARLNGDISEYRRLNGSRNKLLQRDKQNWLENTAKEAEAAARAGNQSVLYKTLRTLSGKTTPPTANVKALDGSDLETPEQQLERWREHFSTLLNRPPPPPCNELDAMASMAVEDDSISVDPPSLDEVEKAIGKLKPGRAAGADGIPPELLLKGGPAVVAWLHALIVSIWRTGNIPTDWRLGVILPFWKKGPKDNCGNYRGITLLSVPGKVLAHILLARLRPLLLQKQRQEQSGFTPGRSTVDRILTLRILAELRREYREPLYATYVDLKQAFDSVDRAALWKILKILGVPSKLLGLLSSLYSDTVSCVRVNGQTSDVFEINSGVRQGCVLAPTIFNTAIDYVMDRTVTQSSCGANYGRVRITDLDYADDVALLAELLETLSIALQHMDAATKPLGLMISWQKTKVQSLCDYQPPPENQVINGQEVEAVNKFSYLGSTITSDCRCIADIQVRIGRAAAAMANLANIWSNKQLSLQTKLNLYNSLVLSILLYGSEAWTLTASWEQHLDAFDTKCLRRILGLHWYDFVPNATVRQMTKQPPISQLIRSARLRIFGHLARSSPLSEPARLILEPTPRWRRPRGRPRMKWLDQLTSDLAAVNMDLPTAWQAAQDRSFWRRCRGATLLGASGL
>RTE-13_BF_pol#LINE/RTE-BovB 357-3368  [Branchiostoma floridae]
MTGQREPGTSSQTVGPDMSRLSTFKPLVISTYNVRTLYQKGKTHQLFMGLNDAGVDIVGIQEHRLITQSPTEELWSDDKNYVLIYSSATAQRLGGVGLAVSKHIYKCLQSVNSVSERILTVTFHGNPQLTITVIYAPTESASPADKDDFYSTLKDHIEMVKKHDEHLVIGDFNARIGHDSHVSHPVATGPHCYYSVTNDNGDRLVNLCQEHKLRPAQTRFPHPRSRLWTWMHPGGSTHQLDHILINGKWVNSLRNCRAYNSVELDSDHRILSVLFVTSLRKSKGKPCRRPKFNWRKLREAHTREVFQMELSNRFEALKCDEVSSPITERYACWEKTVAETAEKVVGRCKSCGMPSWVSAKTLELRDQRDKAKKRFLLAKTRQSKETWRQLNTSLNESYKRDEVAFTEQQIEDLEEADKKGDHLSTWKIINSISGKNRRTNQKVKKRDGTAPSSDNELLAEWREYFSELLNNVSVPQTSGLPPPADQDLPICVDPPTLEETVRAINSMKNNKAPGLDCAITAEALRGGGDVMARAIHAFCKEVFVTLTPPDQWTTNVIVPLPKKGDLSLMTNYRGITLMSIAAKVYNKILFMQIRGHIDPILRSNQAGFRRGRSCAQQTHILRRIMEAYQTHQLPLVITFIDFKKAFDSIDRKVMLAVLRHYGIPLTIVNAINVLYNNSKSAVMVDGNISGPFQVTTGVLQGDVLAPFLFIVLIDFLMRRSTEDIDSGIVTHPRQSRRYPARILNDMDFADDITLLESSIPKAQEQLNRTAAAGTQLGLVISVPKTEYMTINCSQQPPLEVYGQPIKNVTNFRYLGSMMASSKNDLTRRRALAWTAFWKLQKIWSSTSLPTSRKIQLFNVSCVPVLLYGCESWVLSSDMENNINSFATSCYRIMLNIKRLQRVSNSEIYRVTNTQPLICKVRQRQLRFIGHALRMPLEEPLRTYALYVPSHGKRRPGRQKTNYLTYIQNLLGDVEGDLNPTAIAALAADRLRWNRIVTDCTAAD
>RTE-14_BF_pol#LINE/RTE-BovB 81-3461  [Branchiostoma floridae]
MSPRCNCSYLTWGSSVSATGDGLAVWRGVDCGSSEVLYNEGAHWPKLAVVWVTGTLGQDKSLKHPGNEDWQPLPVFAVYGSKMDRESSPKPILPGAGVPRSVAGSRVGPRRHHDDSPVNSREGGELDDHIRRNATTKRHILRCRHPLRLCTFNIRTLKVSDVGSSKIKTVYKTEELCRNLKQFGIEICGIQETRWMHKKDRRDEINSYTEPFGYTLYTVSAWENESKAATGGVGIILGRTAQDLLISVERISDRIIKVQLRGNPAVTVIVAYAPTEAADDCSKDTYYSQLRQTVEGVAPHDFLAVLTDSNARLGPEDAQFTYNSSTNNNGQRLLEILEDYQLLATNTLFEKRKGKLWTWRSPQDTYHQLDYIIVRAKWRNSVTNCEAYSSFSSLYSDHRAVTANISLRLRKSKIKNPKQNVKYIWSDLAADEGLQERYAVEVRNRYQALLLEDDEGQTEDYDKFISANASAAEECLRKVPKQKKRIKCLDPRVSAVREEVEKAYQAYLAGNKKEELREKYKEKKQELYGTYAVIDEEELTSKIEEVEKAHKNSQHGAAWKLINDISGRNSAQSSKLKANSPEERVSLWYTHFSKLLGSPPVISEEDTPIKPVFDTLNMSDEVFSEAEFIAAKMSILCGKACGDDGITPEFLKYAGLDDVVLGFINKAFSTGQLPERWKTLIIVPVPKTGDLTKPDSYRGISLISLVLKLYNRMLLNRLRPLLDPLLRSSQNGFRQGRSTVGQIMAIRRLLEGVNHKNLSCIITFIDFKKAFDSIHRGKLMDILRAYGVPEKLVTAIAATYSQTWAKVRTPDGDTEPFQILAGVLQGDTLAPFLFIVALDYALRCAIEGKEERLGFTLKERASRRIPAKIVTDLDFADDIALISDTAEKACTLLNAVERQCQRIGLQLNTKKTKVMAFNSSDNNVATLDGTRLEVVPDFKYLGGWIASTAHDMKVRRALAWNALHSMRRVWQSGMADDLKRRLFVSTVECVLLYGSETWTLTVQDERALDGMYTRMLRRALNVSWEDRVRNIALYGNLPRLSDKIRQRRMQLAGHYVRHPELVASELILWEPVQGKRKPGRQRTTLIDTLKRDSGLDRLSSTAELRSLMKDREEWRRRVQHASRVGI
>RTE-15_BF_pol#LINE/RTE-BovB 350-3298  [Branchiostoma floridae]
MTSFPNLENSSCGIVKERLLRCKKTLLVSTFNTRTLNSASKLGETAALANEYSIDIVCIQEHRLCHDDVIIQHKDMGNGWKLLISSAEKGSNNATIRGVGLLLSPKAYKCLNSVESISPRIIVANFEGNPATTVISCYSPTNATDEEEVREFYSALADTVKEIPKHNVCIVGGDMNAKIGQPDSKGSSYHSETNRNGKYLLEFINECNMLNLSINYTKKKGKLWSFSYPNGERAQIDYLLINKKWRNSALNCEAYNSFSNIKSDHRIVTAKFRLSLRAPKRQSERGTRYDWGKLLNDAEVNVAYTNEAKRNFVELNDLDETKNANSIYANVIRAHEEAADLHVPIKPKVRKRVPWAYDKNILDKREALRKATVEQKSEVEINKMKDELDKAYEQELESYIKQKTTVIQSAHEEHRGALAWATVNEITSRKKTKQGMLKAKSQQERVNLWHDHFSKLLGQPPNIVNIPVVPVIDYILPINTSDFTREELMDCIKTFNNGKTPGLDNIPIEVWKTEALIDPLLEICNRTFHQDRADVWVSSGILPLPKKGDLGYTTNYRGISLSATAAKIYNKMLLLRIRPHVEPLLRDNQNGFRPGRSTLSQILVLRRLIEGIEDQNLKAVITFIDFSKAFDSIHRQKLMEILRGYGIPDIIVEAINILYVDTKAKVLSPDGETEFFQITAGVLQGDTLAPFLFIVALDYAMRQATEQPELTGFVLKPRKSSRHPAELLTDTDFADDIALTSNIVLEAQSLLHKVENASKIVGLHANDTKTEYMVFNQPEGTLISTKGQALACVKDFKYLGSWIRNSSKDVDVRIALAWGAMSKMSVIWKTDLSPTTKISFFRAAVESILLYGSECWTLTKALKRRLNGTYTRMLRTVLKISWREKIKNKVLYKDIPPIAETIRQRRLRFAGHCWRKKDEVVHKLLLWNPNHGNRGRGRPRKSYTKQLAEDTGLDLQQLPAAMDDKEGWRKLVMWRLRASSPE
>RTE-15_SP_pol#LINE/RTE-BovB  Not from imperfect consensus, but from fully intact  gi|72053019|ref|XP_799214.1| PREDICTED: similar to predicted CDS, reverse transcriptase family member (XS300) [Strongylocentrotus purpuratus]
MGCRPISSRLITIRLKASPFNITIIQAYAPTTDYDDDVIEDFYDQVQKVIDQTPKKDIIVVQGDWNAKIGEDASKNWKGTCGQYCNRKTNERGLRLLEFAKYNLLKVVNTFGPHKPSRRWTWHSPGGQYHNQIDYIMVKGRFQSSANIAKTRSFLGADVGSDHELVMMTFRLRLQRMKSQGNKRIRFSLEKLKDPNIAEIFQATIGGKFAPLLVLGNQDTEIDTLINKFNTAVTETANDILGKHRPTKKPWVTDDILKLCDKRRELKQKKNTDEGVKLYREVNQQLKKGMRKAKEKWIEEQCQDIEENLRKNNSKKAYQLVKELTCSKQGKTTIIQDKGGKCLTEEQDIRKRWTEYCSELYTHTIIGDPKVLDVPPPTNNDSYPIMRVEVEAAVKSLKKGKSAGVDNISSELVQAGGEAMIDMLLIICNKIWQTGEWPSPWTQSLIITLPKKGNLQLCQNYRTISPISHPSKFMLRILLNRLKPQAEEIIKEEQAGFRAGRGTTEQILNLRILCEKYLQHQQNLYHVFVDFKKAFDRVWHAALWATMRLYNINANLIRTIECLYDKATSAVLLDNNIGEWFRTTIGVRQGCLLSPTLVNIFLERIIDDALKDHEGTVSIGGWLITNLRFADDIDGLAGQEQELVNLVNHLEKTSTSYGMQISAEKTRLMTNNTNGINTDVTVKGKKLETVRSFKYLGAIVSDEGSKLEVLSRIAQTTAAVTKLKTIWTDKNIAISSKIRPMRSLVMSIFVYACETWTITADIGRRIQALEMRCFRKLLGISYRDHITNEVVKNRIENAIGPYEDLLISVKRRKLKWYGHVTRSSGLAKTILQGTVQGGRRRGRQKKRWDDNIKEWTGLDWNIIRRKAENREEWRKLVVKSTVVPQRSARLRDR
>RTE-16_BF_pol#LINE/RTE-BovB 193-3342  [Branchiostoma floridae]
MVGRFLGELQLANSTCTRTASVLDGRYTNSGGVVRWVSNPPRKNKLATNPHTWNLNRTDPNGSLTMDRMDLRAKSKQSGRMRVATWNVLSLNREGSAELAANELARLSIAVAGLTEVRWPGSGSHTANDYNFLWSGRDDGQHRQGVALALAPTAFRALVHWKPVNNRLLLARLRHSHGRISVIVAYAPTNVAADEEKDEFFTQLNDLMSTISRHDIVWILGDLNATTGPDRAGYESSLGPHGSGICNNNGKRLLEFCSSFRLRTERSFYPHKSIHSMTWISNDGQTRKELDHILTRRRWHASTDCRVYRSAVLGNSDHRLLAMTVCLRLQKNPSSKAQRKVDVSRLRSPEVETHFQLDLQNRFTALSAHTDEENPEKLWDVFKQNVTTAAVQVLGHKRRKKKKDFLSEETLSVVEAKRAARLEGNRSECRRLNAIRNKLLRKDKQRWLDDLAEEAEMAARRGDQGSLYRTLRTLAGRTTPPTACVKAMDGTVPDTPDQQLARWREHFENLLNRPAPPPSPQLDALAAAASEDDSVPTGPPTREEVVKAIQKLKPGRAAGADGITPELLLHGGPALADQLLQLFTAIWSSETIPEDWLQGVILPFWKKGSKDLCSNYRGITLLSVPGKVFANVILGRLRPLLLRKQRKEQSGFTPGRSTVDRILTLRLLAEKRREFRRPLFAAYVDLKQAFDSVDRQALWKILKTLGVPAKLLTLLSLLYSNTSSSVRVNGQMSDSFHINSGVRQGCVLAPSVFNTAIDFVMSRTVAQCACGASYGNVTVTDLDYADDVAILAEVMEVLQLALQAMDTETHPLGLQVSWGKTKVQSLSDYEPPPPGLVINSNPVEAADKFCYLGGTITSDCKSDTDIQLRIGRAAAAMASLDRVWTSSKISVQTKIRLYNSLVLSILLYGAETWTLTAAQERRLDAFDTKCQRRILGIRWHDYVSNATLRETTSQPQLSSKVRQARLRLFGHIARTEPPLETAALLREPTPPNWSRPRGRPRHTWQEQLKDDLRAAGLDLTTAWVLALNRPMWRSVCAGATLHPGACGPE
>RTE-17_BF_pol#LINE/RTE-BovB 3-1718 fragment [Branchiostoma floridae]
ETTVSQEDHLSESELEECLKALKSGKAPGYDKIPIEAYHHSPAAKQELFRVVNLIWDSEIIPPELVKGIFIMLYKKNDRNNYSNYRAICLLSHAYKLLSAVIARRLHVQLEPLLPDSQAGFRPARGTRDNVCILKWTINMLLRESKPAVVTFIDYAAAFDTESQVFLDEALSSVGASLKVRRIIQAVFSVASGCVCVTSPNGNQELSEPFKISRGVLQGDIFSPVAFIAGLMRIFALHDNPDSGVTVGSPPHQVTISRLEYADDAGLLDESVQDASERISAIAIGSRNDAAMEISVPKTKAMHIHKKDRVSKTTDAEIAALNLKHRCPECTRDFSTKRGLAIHRSRWCLHHPSTANIRSRAGSLADKEVQRRKRLAKEEERDNVVLLDQQLENVHTFDYLGSRMQCDGDQKADVKHRMDIAQSRFSSMHHIWRDHRLPQRMKLRLYKSSVCSTLTHGCEAWDLTQDVTRMINGFNSRCLQVITKKHFRDTATHPDFNLVAAIRRRRLRYLGHVLRMDPSRLVRRTLKAYVCGGENPPEGSLLMDCEXLPFELVARQARNRQMWNAKVNKIN
>RTE-18_BF_pol#LINE/RTE-BovB 1-2433 fragment [Branchiostoma floridae]
LTQTMQRVHKKDITILQGDFNAKIGTDAHKDWSGTVGKHGLGTTNDSGLRLLEFARYHSLAIANTFPRHKTSRKATWHSPDGKTHNMIDFILIGKRHLSSLNLAQTRTFLAAFQEEIGSRFAPLLADNNADDKLATEAETNLKAAAENLLGKARRAKHPWISAEVLQKCDDRREKKKVRFKTRQKNSEYQKANLEVKRAIREAKEEWIRQECSKIEEGIQNNNTKQAYQTLKTLTQKTVNRNTCIEDDEGNLLTTKPDITRRWKEYCYELYNYQLTAEQDVLEELKAYTCQLQEDDDPDILEAEVLSAIKTLKLGKSPGIDNIPAELLKAGGDPVVKMYTRICNYVYKTGNWPEAWTTSIVIPLPKKGNLKNCQNYRTISLISHPSKILLKVILKRLQPQAEQILAEEQAGFRKGRSCAEQIFNLRMICEKYRELGKPVYHTFVDYKKCFDRIWQNGLWAVMRRFNISRGIINSIEALYKASQSTVMIGNEFSECFPTSVGVRQGCLLSPTLCNIFLENIMREALPPLESPVKLAGCIINHLQFADDVDLIDGSKQDQQTHFSCLDSTSRRYGMEVSLEKTKCLVTGPSDTVQVTVRGTDLEQQVSEFTYLGSLQTEDCSSVREIKVRIAKATSVLSRLKHIWNSHNISPPTKIQLLRSLVLSIFLYGAESWTLNAEIVKRINAFEMNCYRRLLRVHWSTHTSNREVMQRVKSLVGPRPSFLSLVKKKKLQWFGHATRAKGTLTHTILQGRAEGARPRGRPRRTWTSDLKEWSGQTVHHLATLAEDRQRWKTYVDGCAAPTAGEAMGPVR
>RTE-19_BF_pol#LINE/RTE-BovB 1-2274 fragment [Branchiostoma floridae]
MVNKKWQRSVLDVRAYRGADVGSDHHLVVTKVRLKLRASPPTKQRCKVFDTAKLRKPEIRREFALELRNRFKALENLVDEEEPNVVETSWDTITKVYSETAKKVLGHRKRKDKEWLTQETWRKIEERKVAKQKLLTSKTQQAKEAYRNKDKQVKRSARRDKRAFVEDLATEAEQAATRGELSTVYRITKKLCNQSSASSVPIKDKQGKLLTSEREQTARWAQHFEEVLNRPEPDVPADPTPSVDIPINIDPPTEEEVETAIKALKNGKAPGIDSIQAELLKADCATATLLLTDLFAKIWKHEVIPQDWSKGLIVKIPKKGVLSNCDNWRGITLLSIPSKVFCRILLKRIDSAIDSRLREEQAGFRKGRGCSDQIFALRNIIEQCIEWNSPLLINFIDFQKAFDSVHRESLWKILRAYGIPHKIVTLIETFYKHFECSVITENSLSESFPVRSGVRQGCILSPILFLITIDWVMKETTSDRPRGIRWTPSKYLEDLDFADDLAVLASKRTLLQEKTDRLSERGKQTGLYINKKKTQVMYINTPTTPPISLDGEVLESVGVFTYLGSVMSTQDGARKDIKSRLDKARASFSRLQTIWKSKQYSRKTKIRLYNSNVKSVLLYGAESWRATKTDMRKLDAFHNNCLRKICNIFWPNKITNEELHRKTECRRITTEITHRRLKWLGHVLRMTDNRIPKVALTWRPDGKRKRGRPKTTWRRTVSDDLVSMGLSWKSVQTAAQDRPRWRKKVIALCLTRDEEDK
>RTETP-1_PT_pol#LINE/RTE-BovB 1-2789 via tfasty with RTE-1_TP_pol, 1 frameshift and 5 stopcodons. [Phaeodactylum tricornutum]
ALQTAEKDMEILLLGNINVDISLPGGMVxDIKITTVLSSFGLQDLTRHFWQRNHYRHRWTWRAKRNGRMVHSRNDVVMGTDRRFIRAVKILDPPCFESDHYAIVVTMQTGLLAEQKHYLEGRRRMPKTAERGSGETKLPADVAFEQRLKCKVQVEPKKQSVHPDWLSAMTHALLDKRVNLLKHGASHRRRKQVGRHIRKSMxRDWRSRAEEAGRQIEQLLEAKDVSGAFDVAKRWYRKSTGRPPPPCRENMEATASRYKDLYQAEPAPGAPIPTSTSRQWQVLDNAPEADKIAWHVRKLKTKKAPGTSGIRPEDMRHWLNLFEVEQRDQQPFRLLTEIVQSAFLTGQLPQALSVAILVLLLKPGSTEIRGIGLLESVWKLILSIIDARMKDVVEFDNAIHGFRQERGTGTAVLHNKLGMQLAVARKDTVVQLYLDLTKAYDILDRGCALAILRGYNVGKNIIRILETFWSWHKAVPRASGYYGRVIGATRGVTQGDIVSPMIFNIVVDCILKAWRTEFRATVARVEAIFYANDGELLSESTMALQAALGxFSDYFACGGLRMNVDKTKSLVSDPGPIQLGMSLPAFLHRTTGEGGNSRLRRAKKVTCEICGHDFRQTLLTRHMQAIHHVDLTPxAPLSRRLFNSKEEYLVSIPKLKEPIxVVCPVDGCHATASQAHDMRKHFMLRHPTDRICIEEEGVQALPKCKHCGMHVATKTVAHHFRTKLCEVGQKRKAARTQEWTAQTATSHQFYIDGVAVGRVNQFRHLGRQILVNDSNDGAIRYNISKARAKWHMIARVLVQEEASPRVMGMFYKVIVQSVLLYCSETWVLTLAQYDWLNAFHVTIAWRISGLKVWYDPDTETWLKPASNMALERAGLHPLAMYLKRRRDYILPYARNLPDFASLRDWAVTRNIVQRSFWTDDSDLSKLQEDI
>RTE_Ele2_pol#LINE/RTE-BovB 334-3354  [Aedes aegypti]
GSIPNFSPTTKNGERRNNERYFRQPTWQRNKDYEWKLGTWNVRTLNEPGRASLLARELQKVGVGVAAIQEVRWPRSGEREFRAVDPIANTTFKYNIYHSGGDKAEHGVGFIVIGKQMKRVMKWKPISERICVLRIRGKFFNYSLINIYAPTNDKPDDVKDAFYEGLDKAYGECPKHDVKIVIGDANAQVGREDFFRPIIGKESLHSVTNDNGLRLVTFAAARGMAICSTYFARKDIRKHTWRHPNGDICNQIDHILVDGRHFSDVIDVRSFRGPNIDSDHYLVVSKIRARLSTVANSRPQRTMRFNIQRFSADGVTAEYHQKLDERISEVNVSENLNNLWDAIHGVVSETAREVIGTARRRPRSGWFDEECQRVTDEKNVARRRMLVSGTRLNRERYREARSAEKRIHRRKKKEFDENVIAEAQNCMEQNDMRRFYETVNGVRRKSAPSPVMCNDREGNLLTDKTMVAARWKEHFETLLNGGNDRASENRMNIDNDGQAVEPPSLDEVKKAIKELKNNKAAGKDELPAELLKHGSEQLHRIIHHILLRIWEEEELPASWMDGLICPLFKKGHRLECANYRGITLLNSAYKIMSRILFNRLRPLEESFVGEYQAGFREGRSTSDQMFTLRQILDKFREYNLQTHHLFIDFKAAYDSVKRNELWEIMMEHGFPTKLIRLIRATLEGSKSSIRVADEISTSFVTLDGLKQGDALSNLLFNIALEGAIRRACVHRNGTIITRSYMLLGFADDIDIIGIDRRAVEEAYVPFKRETTRIGLIINTTKTKYMVAGRHRGPIGDVGSEVVIGGDIFEVVEEFVYLGTLVTCDNDVTREVKRRIAAASRAFYGLRNQLKSRSLQTKTKLALYKTLILPVALYGHESWTLKEVDRRAFGVFERKVLRTILGGKLDNGIWRRRMNHELYQVYNEMDIVKRIKHGRLRWAGHVARMSEERQAKQIFSREPGRGRRLRGRPRTRWLFAVEEDLRSLNVQGDWKRLAQDRVQWRRLLHSA
>RTE_Ele3_pol#LINE/RTE-BovB 306-3350  [Aedes aegypti]
QPTVPETSKNVQETDRERLRTDLTATTFSAKQRTRIGTWNVLTLAQQGKLAQLANEACRMKLEILGLSEVRWPNFGEHRIPSGQILLYSGLRGEHAPRHRGVGFLLSAQAYAALMKWEPINERIIVARFRTRVRNLTIVQCYAPTDAAELQDKENFYSQLNAVVDKIPKGDIKIYMGDFNAKIGSDNSSYEPVMGRHGLGEMSENGELLAEFCGNNDMVIGGSLFPHRPVHKVTWVSRDGFTENQIDHICISRKWKRSLLDVRNKRSADIASDHHLLIGEVRLRIARIRRQEERVGRRFNTRRLEDATVKRSFVEELETXAANISEGGSVEEQWTAIKNAFITTSENNLGELRTRRKQWITDETWRKIEERREAKAAIERAKTRGAKALSRQRYSALEREVKRSCRRDKRAWADSLADEGEKAAATGDIRLLYDISRRLSGAKMNTTMPVKDTTGQLLTDPTDQLKRWFEHFEQLFQVSTRPPTPQHDPPRVRRISRVNTEAPSLHEIETAIQSMKSNKAPGVDRISAEMLKADPAISAQLLHQLFRNIWDTATFPADWMQGVLVKVPKKGDLTVCDNWRGIMLLCIVLKVLCKVILNRIQEKIDATLRRQQAGFRAGRSCVDHIVTLRIILEQVNEFQESLYMVFIDYEKAFDRLNHENMWGALRRKGVPEKIIGLIEAQYEAFTCRVLHNGVLSEPIRVVAGVRQGCILSPLLFLIVIDEILIGAIDREQNRGLLWQPITMEHLNDLDLADDIAILAQRRSDMQSKLDDLAERSSAAGLNINVNKTKSLDVNTAGPSSFTVAGQTVENVENFQYLGSQLASDGGTKIDIGARIKKARAAFASLRNIWKNSQISQRTKIRIFNSNVKSVLLYASETWCVSAENTQRLQVFINRCLRYIIRAWWPHNWISNADLHRRCHQQPIQTEIRQRKWGWVGHTLRRGGNEICKQALEWNPAGHRSRGRPRGSWRRSLNKEIKEVDGNLTWPQVKAIAGNRPGWKSFTSALCTRMGAQDP
>RTE_Ele4_pol#LINE/RTE-BovB 298-3420  [Aedes aegypti]
PHQRDRPSVSWDVKQSWHDGAPARQECWRRPNKPPVKNLIANNIGDNTTRNNRQRPTRRNKDYDWKLGTWNCKSLGFAGCDRIIYDELHPRNFDIVALQELCWTGQKVWKSGHRAATFYQSCGTTNELGTGFIVLGKMRQRVIGWQPINARMCKMRIKGRFFNYSIINVHCPHEGRPDDEKETFYAQLEQIYDGCSPRDVKIVVGDMNAQVGREEMYRPVIGRNSLHAVSNDNGQRCVNFAASRGMVVRSTFFPRKDIHKTTWRSPDNLTENQIDHVLIDGKFFSDITNVRTYRSANIDSDHYLVAICMRSKLSTVTNSRRSRTPRLNIERLRDSEVAQEYAQQLEVALPTEEQLGAATLEDGWRHIRSAIGSTATAALGPAAPNQRNDWYDGECEQLKNEKNAAWARMLQHRTRANEARYKQARNRQNSIFRRKKRHQEERDREAMEELFRAKDTRKFYEKLNRSRKGFVPQADMCRDFDGNLLTNEREVVERWRQHYDEHLNGDVASSGGGTEITLGARADDERLPPPDLQEVETEIRRLKNNKAAGVDQLPSELLKYGGDALARALHWVISKIWEEEVLPEEWMEGVVCPIYKKGDKLDCANYRAITILSAAYKVLSQILCRRLSPIAREFVGQYQAGFMGERATTDQIFAIRQVLQKCREYNVPTHHLFIDFKSAYDTIDREQLWQIMHEYGFPDKLIRLIKATMERVMCVVRVSGTLSSPFESRRGLRQGDGLSCLLFNIALEGVIRRAGIDTSGTIFRKSVQLLGFADDIDIVARNFETMADTYIRLRAEARRIGLNINVSKTKYMIARGSREDTARPPPRVHIDGDEIEVVEEFVYLGSLVTADNDTSREIQRRIVAGNRAYFGLRRTLRSSKVRHRTKLTIYKTLIRPVLLYGHETWTLRAEDQRALGVFERKVLRTIYGGVQMEDGTWRRRMNHELHQLLGEPTIVHLAKIGRLRWAGHVTRMSDTNPVKMVLENNPTGTRRRGAQRARWVDQVEDDLRTLRRMRGWQRAAMDRVEWRRLLRTAEATQALA
>RTE_Ele5_pol#LINE/RTE-BovB 188-3241  [Aedes aegypti]
HDVGSATLVRWPIEDSSPTKKGKSRANGLILRQQTRQRIKDNDWKVGSWNVRTLNEPARVGLLARELRNVGVNVAAIQEIRWPRTGEREFRAVDPIANTSFKYHIYYSGGDRAERGVGFIVIGKQMKRIIRWKPVSDRICVLRMRGKFFNYSLISIYAPTNDKPDDMKDEFYESLDKAYGECPKQDVKIVIGDANAQIGKEDFFRPVIGTESLHSVTNDNGLRLVTFAAARGMAISSTYFARKNIRKHTWRHPSGDACSQIDHVLVDGRHFSDVIDVRTFRGPNIDSDHYLVVAKIRARLSSVTSSATHRTLRFNIQRLSTDGVAAQYRQQLDEKLGRVNVAGDVDSLWDPIHEAVTTTAREVIGTGQRRRRNDWFDEECQRVTDMKNVARSRMLVAGTRQNRERYRAARAEEKRIHRRKKRQHEESVVADAQESMNRNDMRRFYATVNGARHNTVPVPAMCNDREGNLLTDKTAVAARWKEHFQQLLNGENGNVARNRMNIDDDDQAVDPPTIGEVKKAISELKNCKAAGKDEIPVELLKHGSEQLYQSIHRVLLKVWEDEELPTGWLDGLIRPIYKKGHRLECANYRGITLLNSAYKILSRILFNRLRPLEESFVGEYQAGFREGRSTTDQMFSLRMILDKFREYNLQTHHLFIDFKAAYDSVKRNELWQIMSENGFPAKLIRLIRATLDGSKSSVRIADEVSTSFVTLDGLKQGDALSNLLFNIALEGAIRRSGVQRNGTIITRSHMLLGFADDIDLIGIDRRSVEEAFVPLKRETARIGLTINSTKTKYMVAGRDRVRHGGVSAEVVFDGDVFEVVEEFVYLGTLVTCDNDVSREVKRRVAAANRAFYGLRNQLRSRSLQTETKFALYKTLILPVALYGHEAWTLKESDRKALGVFERKVLRTILGGKLENGVWRRRMNHELYQVYKDANIINRVKYGRLQWAGHLVRMSEERIAKIIFSREPGRGRRLRGRPRIRWLYAVEEDLATLNVRGNWRSFAQDRRRWSSTIRPAMA
>RTE_Mdo_pol#LINE/RTE-BovB  1154-4042  [Monodelphis]
MKIRLPLSKDRYATIISAYAPTLTSTEETIEQFYSDLSAVLHSVPTNDKLILLGDFNARVGQDHERWKGVLGKHGVGKMNNNGLLLLSKCSEFELTITNTVFRMANKYKTTWMHPRSKQWHLIDYIIVRRRDIQDVQITRAMRGAECWTDHRLVRATLQMRIAPRHPKRAQTVRAFYNVSRLRDPSYLQTFQSCLDDKLSAKGPLTGSSTEKWNQFRDAVKETSKAVLGPKQRNHQDWFDENNTAIEDLLSKKNKAFMEWQNNPNSAPKKDRFKSLQATAQREIRKMQDRWWEKKAEEIQRFADTKNYKQFFSALKTVYGPLKPTTTPLLSSDGDTLIKDKKGISNRWKEHFSQLLNRPSSVDQSALDQIPQNRTIEQLDVPPSIEEVQKAIKQMSAGKAPGKDGIPTEVYKALNGKALQAFHIVLTSIWEEEDMPPELRDASIVALYKNKGSRAACDNYRGISLLSTAGKILARVILNRLLSSVSEQNLPESQCGFRPDRSTIDMVFTVRQMQEKCLEQNLSLYIVFIDLTKAFDTVNRDALWVILSKLGCPAKFVKLIQLFHVDMTGEVLSGGETSDRFNISNGVKQGCVLAPVLFNLFFTQVLRHAVMDLDLGVYIKYRLDGSLFDLRRLTAKTKTTERLILEALFADDCALMAHQENHLQTIVDRFSTATKLFGLTISLSKTEVLFQPAPGRPTNQPCITIDGTQLSNVNTFKYLGSTIANDGSLDHEINARIQKASQALGRLRCKVLQHRGVSTATKLKVYNAVVLSSLLYGCETWTLYRKHMKQLEQFHQRSLRSIMRIRWQDRITNQEVLDRANSTSIEVMVLKTQLRWSGHVIRMDPQRIPRQVFYGELSAGLRKQGRPKKRFKDQLKSNLKWAGXTPKQLELAASDRSSWRTHINHAATTFEDERRRRLAAARERRHQATTAPPVTTGVPCPMCHKLCASAFGLQSHMRVHRR
>SR2B_pol#LINE/RTE-BovB 3-1415 [Schistosoma mansoni]
KLAATSVASKYRAELASRLATTPPKSIDEHWLHLHDAMKMASKVACGFAKRPAYKHWVSSGSLQLIEARRSTPGDREFDHKRRLLRNEIGQSLRKDREAWWSERANEMEAAAASGNCRKLFQLIRATGSKKSGVSETICEDDGMPITNICRRLGRWAEFFEGQFNWHAAPATSTSLSFPPWPVTTDPPNEAEVRKELQLLKRYKSPGPDDLHPALFKDGGDFLAKELTVLFGKVWEQESVPTSWNESIVVPIFKKGSRCSCNNYRGISLLSIASKLLASIILRRLFKTRERLTREEQAGFRSGRGCIDHIFTLCQMLEHRHTYRRPTIVVFLDIRAAFDSLDRTVLWDCLLKKGVPEKFINILKALYTNTSGRVRAYNHLSPLFHSSSGVRQGCPISPFLFNFAIDDILETALMDVSNGSVDMLPGERLLDLEYADDIVLLCDNAQGMQSALNQLAISVRRYGMCFAPSK
>SR2_pol#LINE/RTE-BovB  gi|5597017|gb|AAC24982.2| reverse transcriptase [Schistosoma mansoni]
MLPPIMNTEAVFLKPRTPFKLASFNVRTLMQIRQQMGLAMSLESLNVDVCCLSETRIQDSSEVLQIRSPSVASKSLFHVRLSGDPVASSSGLAGVGVALSARAEAALIDWIPINSRLCAVRLESSIKVRRNRREKRCLFVISAYAPTDCSPDAIKDEFYHQLTVLLQKARSTDIVVLAGDLNAQVGRLGTEESRLGGRWGLVGRRTDNGDRLLQLCTDHNLFLASTNFRHSHRRCATWRPPSASQAWTQIDHIAISYRWRGCVQDCRSFWSTYLESDHALVCANLTLLFSGRRIDHHQRIDVSKLAATSVASKYRAELASRLATIPPKSIDEHWLHLHDAMKMASKAACGFAKRPAYKHWVSSGSLQLMEARRSTPGDREFDHKRRLLRNEIGQSLRKDREAWWSERANEMEAAAASGNCRKLFQLIRATGSKKSGVSETIYEDDGMPITNISRRLGRWAEFFEGQFNWPAAPATSTSLSCPPWPVTTDPPNEAEVRKELQLLKRYKSPGPDDLPPALFKDGGDFLAKELTVLFXKVWEQESVPTSWNESIVVPIFKKGSRCSCNNYRGISLLSIASKLLASXILRRLFKTRERLTREEQAGFRSGRGCIDHIFTLRQMLEHRHTYRRPTIVVFLDIRAAFDSLDRTVLWDCLLKKGVPEKFINILKALYTNTSGRVRAYNHLSPLFHSSSGVRQGCPISPFLFNFAIDDILETALMDVSNGGVDMLPGERLLDLEYADDIVLLCDNAQGMQSALNQLAISVRRYGMCFAPSKCKVLLQDWQDSHPVLTLDGEQIEVVEKFVYLGSYISAGGGVSDEIDARIMKARAAYANLGHLWRLRDVSLAVKGRIYNASVRAVLLYACETWPLRVEDVRRLSVFDHRCLRRIADIQWQHHVSNAEVRHRVFGRRDDNSIGVTILKHRLRWLGHVLRMSSQRLPRRALFADSGTGWKKRRGGQCMTWCRGMKESCKGLASVGPSRLPGWGPRDGATQWLETLSDMAQNRSQWRSCCNLLLLST
>SjR2_pol#LINE/RTE-BovB  430-3705 gi|19067879|gb|AAK14815.1| polyprotein [Schistosoma japonicum]
MTNTSPVSFSGISTSNILSWCGQPGSDNRPHTSNSIQIHLVRGQIPPSTLNNSLITMPNPSNIILSPCVSNAIGLSSRNVIPGVLKLRTKLYIGAFNVRTLYQVGQQASLATTLESRSIDICCISETRIQDPSTVIRLTSPCENKEPAQFTLRVSGDPTATTRGLAGVGIALSLKAEQALLDWIPIDSRLCAVRLNGTVRTRKDRDTRRCLFVVSAYAPTDCSSDEMKDEFYRKLYDLLCKAKRTDVVIVAGDFNAQVGRLEETERHLGGSYGVEAQRTDNGDRLLQLCSDKRLFLASTNFKHKERHRLTWRPPKSTQRWTQIDHIAISHRWRGSIEDCRSFWSTCLDSDHALVRARISLRLTGRKRSTTRIPHRVQFNDEKVKNTFQEQLKNQLVNGVNCSQPELAWNDIQKAVERAVISTNKLDLKVRKTQWISAASTELIDPRQHIPSGSEHDEQRRQLRHKLIKSLRNDREQWWVAKAKEMEKAAAIGNSRQLFRLIKETGIRNPTVSETISEKDGSIIHCQSRRLDRWAEHFREQFNWPTASSLLPTIPKQSEWQINIGPPSLSEVVKAIGNLKRGRAAGPDGLTPEIFKEGGPVLAARLTEILARIWELDVIPSDWSRTLTIPVFKKGQKSSCDNYRGISLTNIVSKILASIILRRLTKAHEEQTRENQGGFRPGRGCIDQIFTLRQVLEHRHTFRRPTIAVFLDLKAAFDSIDRKVMWQCLSLKGVPEKYINLIQALYSNTTCRVRAYGRLSSELTTSSGVRQACPLSPFLFNFIIDILLELTLSSSDFPGVDLFPGDKLTDLEYADDIVLLSEDADKMQDFLTTLNMNVSMLGMRFSPSKCKMLLQDWLNSAPKLVIGRETIECVNRFTYLGSLISPNGLVSDEISARIHKARSAFANLRHLWRRRDIRLMTKGRVYCAAVRSVLPYGCETWPLRVEDIRRILVFDHRCLRNIARVCWDNRVSNAWVRNRVLGKYGKSIDEVVNLHRLRWLGHVLRMPDHRLPRRAMLSVVGVGWKKARGGQTKTWHQSMKSLTIGLSHVNRCRLPGWGPHDDRNKWLETLGDMAQNRLQWRRCIHSLSSSEF
>17506559_Cel_pol#LINE/RTE-RTE gi|17506559|ref|NP_493497.1|  predicted CDS, reverse transcriptase family member (1O881); combined with gi|7332127|gb|AAF60814.1|  Hypothetical protein Y58G8A.2  [Caenorhabditis elegans]
MHSIGSDGVGIFLGSRNPNSVSGGVGFIVKSTLLPRITEVVFIDHRIGLITFKVNRKWKCTVIQVYAPTAVSTLDEISDFYEKSKYKLIIGDFNARVGNRKGETKRYIGTHAMEPRNDTGEILATFCESNRLWHMNSQFYKPINRRWTHVSPDGMFKHEIDHILANGKFVTDTSVLPSFTNGSDHRLLRSNIHFNINLAKLDQMKRRKPPKRVLDKATALAVSATITAPTHGDIDEDYKILVDSLKTAQDQSVIQPSNHSANRLSEETRLMLFKRRLMDRSDPNFKSLSIKCREAVERDHENFASARLLNAAQSRKSMKRVARDLNEYKSFIPSLKCSSTGERITSREKMEREIEMFYTSLFRSRKTPPPPQLPTPPPIMAEPLPPFLFGEIRAAINSFPNGKAAGSDKITADFLKSCGDNVIRLITGRFNRYLESGNIPKDWKTSKTTLIFKKGDRESLENYRPICLLPVLYKTFTKCVLNRIRKTLEEAQPVEQAGFRRSFSTIDHIHSVQRLLEVGREYQIPLTLVFIDFQKAFDSVEPQDVWDSLQQQGVQRGYINLLQECYTDCSTTFTPFHKNVTVPVIRGVRQGDPISPNLFSACLEHVFRQLNWKHFKGDERYETEGIRVNGQNLTNLRFADDIVLVAHNPRTASQMLTELVEKCSSVGLKINTGKTKVLRNRFAYKRKVEIRCPNTTNIIIDDVNEYIYLGRQINDSNNLLPELHRRRRAAWAAFTNIKSTTDQITCPRLRANLFDSTVLPALTYGSEAWTFTKELAERVRVTHAALERKLVGLTLTEQRERNIHREEVREKSKLRDPLIHIKKKKLGWAGHVARRTDGRWTTLMNDWCPRDEKRPVGRPPMRWNDSLRKEVTTRDAFGQVIQLWSTQA
>17544228_Cel_pol#LINE/RTE-RTE gi|17544228|ref|NP_500154.1| predicted CDS, reverse transcriptase family member (4C744) (C terminus from gi|1330346 and gi|13324980) [Caenorhabditis elegans]
MLPFLAASPGLGDVRAPAIWLGLVSQPSRTPIITKNSKTKRKTDGSTTRQSSSLGPRSSPLRSAGGQLRKTTRSELKKSHFHLGSWNAQSLLGPRLASGVEYLKNSTCHVVNLQETRFFSMASIDQPEFQLLFSPKTNSKDLGLGFFVKKCQDLEVINVSWIGVGIASLELEFRKVKIMVLNVYAPVCKSRSENDAKRFFERLRAEYIQLRKSFKGPIVLGGDFNAATSCSTNDELAPWICGNVFGNSNNHGDFFFNFLASTRLFQLNSRFRKRLASRWTFAGKKGVGRTEIDFFISNRIDLVEDVSTFPNLHNLSDHRLIRSRWVISVKSERDHAFKSRRPPSTGKERDWTLYEDAIKDLRKHATLGSYDSFVKTLRQGLVPLPAHKPHKFSQRTIMILQERRQVLESSVPDIAKLRKLSQEARKSITEDLTQKYDSILEACRKKRSSKILNKSIPAEIPLQYLEWPDGSLTANRIEIRKIVESHFKTLYEAPTSSPSHPRNPNSNPPNSDPVPAILKCEVRLEIRKLKTKSAPGLDNVDAAMLKNGGDTVVDSVTALFNDILHHNKVPDLWKIADVKLIPKKAKATKIKDFRPISLLPILSKMFSSILTRRLTPTLESYLDESQTKVFRKGRCCADNIQSLTMLIEKCNEFQLPLLLLFIDYQTAFDKISHSSVVSSLERAGADPAMRKMIQELMEGGQAEITVHDKKLKVNLCTGIRQGDSASPALFSAALQAILTDCDNELAGVGISVEGRHIRRLEFADDVVLICSTPEEVQERLEILDRISSNYGLKINQSKTVLLKNKFCRSQDILFNGSPIIPVPGCRYLGRWIDISGSIDEEISRRIRAGWGALVGIKEVLRIMPNKERIILFKQNVLPALLYASETWTCNAGSTLRLKRTVTGLIDAAEIRGWNFNLDRYLLAKQSRFAGHILRRDPNRWTKICTEWDPSHNKNWKRAVGGQKKRWAKDIDEEYARFHHNSAMSGQVVVGRRRLGMLTPKVPWLSIARTDREKWKEFVRSCLAT
>72133877_Spu_pol#LINE/RTE-RTE gi|72133877|ref|XP_788695.1| PREDICTED: similar to predicted CDS, reverse transcriptase family member (1O881) [Strongylocentrotus purpuratus]
MTDTNKQRPPVPSSSFVPDQGGGPIKQGAGGAKNPWVRTGHHWKLNIATYNVRSLLQEERLLELEEELQGIKWDIVGLGEVRRRGEELTVLKSGHHFYHIGKKNKSEAGVGFLVHKSIAGNISEIKGINERLAQITIKINKRYKIKIIQVYAPTSTHDDEEVEKLYEEITDVMKGSKTQFTIVMGDFNAKVGKREEGEESTIGPFGIRKKLREDIRSYNTTMIKSTIEENRSLKKTFKKLAHGKQKITSLLDSNGQEITDQDQILQRIEEFYEQLYNSNKETEDPGEPQEEIPVVTHWEVQHAINQMKRGKSPGPDNILIDTIKEGGDTITEELAKLYNACTCMQTRKIPHQWKEATMIILHKKGDKRDLKNYRPISLLSNLYKLYTKIITNRLEKILDNNQPREQAGFRRGFSTMDHIHTINQLKEKCQEFNIPLCVAFVDYEKAFDSVETYAVLKALQDQGINNTYIKILKDIYSDCYNTVRMHKASNKIMIRKGVRQGDTGSPKFFTACLESIFKTLDWSSKGININGENMSHLRFADDIVIISHNLNDLEIMLQELDDASRLSGLKMNMKKTKVMAGSAKDPKQIQVNGTKMEQVEEYIYLGQRFSLQDKNQDNEIRRRIKAGWRAFGRYSTIMKGKLPLCLKKKVYNQCIIPAISYAAETWTKTNKWIREQTKVQDILKTVKRRKWNWAGHISRRKDNRWSSAITHWTPYEGKRNRGRQRKRWRDELQQFWGQTNWHQQALNRGIWKHHAEAFILQWIDNG
>RTE1_Mars_pol#LINE/RTE-RTE 299-3172 [Marsupialia]
MVAEWQKKGAEGAKNHIVFRPSININLAVGTLNVRSLSNDQQVDILLEELNHINLDILAINETRRQKEVAAKWKDGSQVLLGEANKGIGRVGFIMYPKATRNIISWDIWSSRIAVLMISICKKTTMKIIAAYVPTSVAEDEEVEKFYEELNKTLQIKSTYTLILGDFNAKVGIGEDGEKYIGKYGSGIRNERGQRLVDYTEASCLYIMNTFFEKRIRRYWTWRAPNNITKNEIDYILTDRKRLVTDVGVIPESAVCVQSDHRLVRAKIKINTKLEERIKMRKRYGIQLKQLQPDLFKQVIDAEKWEMDKRXDIDTDYNXFXXKFNRCKSIATTRRPKEPRNHLSQQTLDXLAKRRXMAAKGNTGLEYKLICKILRRKMVEDYEQYHLIKQREAVEGKTSLKKAWQETQLSKVIPRAFKDEXGRKTTNRRKMEKICKDFYNKLFSPSXTVEPPHLDSNITVPDVLTEEVEMALKKTKMGKAAGLDQVYTEEIYAGGDTILRALRDRFSRYLKEGKIPKAWRKSRTLLLPKKDDRENINNYRPICLLSHLYKIFMRIIYTCIEGILDEGXRREQAGFRKRYSTADHIFTVTQLTERCREYKIPLCLLFVDYKKAFDSVEQNAALKALLQQGVSHAYVKIIQDSLKDVTTEITLFDDPLIINIKRGIKQGDVCSPKVFATVMEDVQHRVQMEEGFPIDGEVLQMLLFADDIVLIASSPRTLQSLLNEIHNHSKEFGLTIHTGKTKWMKNAYCPDYDMQLDGQPIELVHQYIYLGQTLQMDNELGPELNRRKRAGWIAFGKLHSAFNDPKLLPETKAHLFNTNILPVMLYGCESWNTTVSEELKLXVTQRAMERYMVGMSRLQHITNEELCRRSGIKDVIREMYDRKRRWAGHVVRARDNXWTAYVLHWYPRNVKRSRGRPPACWVDPLWRIYGRTWTRVTQDEXAWMGCDLHHWREYPHR
>RTE1_Sar_pol#LINE/RTE-RTE 366-3334  [Sorex araneus]
MVTPLRAIGGRPKSLRPSRRARQATESIPPARQSLASYPSRIRYANNSNNNWPHSPVTERAPNTAALRKMSKERLKKSRGRTRLPKRRKTKMIVCTFNARTLASEASIEDLMVQAQKIKYDIIGLTETRRHQSHHAIFDTGEELFLGTCDNRGVGGVGVLVNTNLAMSIDSFECLTTRIGRLRLNRCGSLPAVSIFVVYAPTSNYDEEEIERFYMELEKFYKEDHTFYKIIVGDFNAKIGPRRSPEELHIGTHGLEWNDQGERLSEFIMSTKTIHGNSQFQKAESKRWTWESPGGQFHNEIDHIIFNRRFCLTDVAVVPKFQTGSDHRLLRAKFYFTERGEKSAKFKSKKATPRMTTNWELFGTIAATWEDAVLDNIDEEYDRLVQHLHVCAKNAESEKATNRRLSSETLELIRQRGLARASGNHKLTSELTKLCRDAIKEDLKERRAAVLASAAEAGKSIRNARLSFANYKTKMTALRRPDGSITSSRKAMEKIIHDFYSDLFDSHVHLPTYQIPQDGYVVPNVLPSEIRHAISLVKTRTAPGPDKVRPEHLKNLPPVLINTLARLFTRYLSECKVPSQWKTSRTVLLYKKGDIHDIGNYRPICLLSVVYKLFTRVILNRIGRTLDEGQPCEQAGFRRGFSTIDHIHTVTKLIEVSREFKMPLCLTFIDLKKAFDSVETEAVIEALAKQGVQTQYIKILRELYCGFTTRISPFYKEVIIDVKRGVRQGDTISPKLFSAALENIMRRLEWEGMGVKIDGRQLHHLRFADDIVLITPNISQAAQMLADFDHECGKVGLQLNLNKTMFMKNELVPEAPFALNGTNISECSSYVYLGREINMRNDLVPELRRRKRAAWNAFKSVEEVVKRTKNLRLRAHLFDSTVLPALTYASETWALRKQDENAIRVSQRGIERAMLGISRLTQVREGIRSSDLRRRSKIRDAVSFAKASKIRWAGHVMRFRDDRWTRAVTDWIPRDVRRPRGRPPTRWSD
>RTE1_pol#LINE/RTE-RTE gi|3283068|gb|AAC72298.1|  reverse transcriptase (repbase entry contains 1 frmeshift at N terminus) [Caenorhabditis elegans]
MISSHREWLGLEPSANYLAKKYTVSRRPEVVSNTLCPGGSRLAIGLAGHYRVSRDTTFALNSNPSCLSPPHPASAKGKTVPGARRKRRSNLGVQTICQSDLEIKKPRDKTRRTDYRVCTFNCRSLSSDDRLAELLEETRRIQFDVIGLCETKRAAEAHLIHHDGTGVFLGKRNESSVSGGVGFIVRSTLLPKIVEVRFLSHRIGLLTFKVSRKFNCTVIQVYAPTADSDLEEICDFYDSVEDVFRECRSKYKLVIGDFNARMGCRQNNERYIGPHAMEPRNDTGELLATFCETNRLWHTNSMFKKPMHKRWTFVSPDGNHRHEIDHILANGKFVTDTTVLPSFTNGSDHRLLRCNLHFNNCLAKLEQVRRRKPPKRVLDPAIAYAISATVTVQSDPDLDTDYDNLIQSLKELQDQAIVRPANHSSNRLSEETRKLLNKRRFMDRNDPQFKSISDKCREAVQKDHEAFASTRLLSAANQKKSLKRVARDINEYKSVIPCLKSTSTGERITSRVKMEQEIEKFYTELFKSAVSNSQTSSIPATATPPPFLPEEIRHVLRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDRENLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPVEQAGFRRSFSTIDHIHSLQRLLEVGREYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQGADGAYIDLLKECYKNCTTNFTPFHRPVAVPVTKGVRQGDPISPNLFSACLEHVFRKLSWIELKGEAEDYDTIPGMRVNGRNLTNLRFADDIVLIANHPNIASKMLQELVQKCSEVGLEINTGKTKVLRNRFADPSKVYFGSPSPTTQLDDVDEYIYLGRQINAQNNLMPEIHRRRRAAWAAFNGIKNTTDSITDKKIRANLFDSIVLPALTYGSEAWTFTKALSERVRITHASLERRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKKRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKQWLAVIRRNTTNS
>RTE-1_PPac_pol#LINE/RTE-RTE 100-2898  [Pristionchus pacificus]
MVLPFFLATMNVLSLATDGRLTLFDQAVMKIKADVIGLCEVRRKEEGAIDLTSSSGTLYHTGRFGNRSAGCGFFVSRRMKPKVVRFLTISPRIALLDCRLPNNVLLRLVQCYAPCSNHSDDQYDAFLSELESVFRQVVPGQRKFRKVYRVIMGDLNARVGKALPGDTAIGKFGYGDRNDRGEKVITLCETLRLRIGNTMFQKQESHCHTWVSPTGTTTTRIDYILYPRDFPALDVDVVNRMDFTSDHRMVRASFSVEGRPLGHRGGGKNEVVLVRDQFKDNLVRSIEGIPVGCDYSTLVSSIQQAATLSSTPAPSVPRFSPRTRQLFAERSKIKATVQGRDRVQWVAINKALRGSLQQDAIDRMTRMVEKAVEEGKNYSKAIGSQSVGRERIVKMQGGKGIVTTQADLEGVFREYYNKLYKGDGGRNYTVRETEEEFIPIGRDEVESVLRGFTSGKSPGEDRVSGEMLKAGAEILSPYLTAIFNKILIEGFIPQGFGDSRTILLFKGGDKTLPKNYRPISLLPVIQKTLTAVINNRIGCSLDNLRAREQQGFRGGHSTVDGIFILNTLIANCREFKRPLYLLFLDVSKAFDSVLCDSVLTAMERDGVHSTFIRFLQSLTVQSKSSVVVNGKGVEVDIGRGVRQGDGLSPRLFVAVLDTVFRGLNWGKKGICINGEYLSHLLYADDCVLISHDPRQIQSMVRELERELLAVGLCLNGAKTVALSTIPNSRPVIVAGETVVVKDKVVYLGQEVTMDSNRFKGEIHRRVRSANWAFSKYSEFFRKRGCPMVLKKRLFDGVVLPAFLYGAETWYLCKRDKQILSVAQRKLERKMLGITVLDHIRNEHLRSITKLKDVVREAEKRKWMWAERLSNFSHERWSLRILEWTPQGRRNRGRPLKRWRDDFVNAAGPQFLQLARDRTQWRTLMATQLRSHQ
>RTE-2_BM_pol#LINE/RTE-RTE 337-3151 via tfasty with 72133877_Spu_pol, 3 frameshifts and 3 stopcodons. [Bombyx mori]
KLYIITFNVKTLSSYEKLIELTESLKSIKSDIIGMAEVRRLGEKIEEYEDFILYYTGQTPGQFGVGFLVRKNLKVNIENFTGLSERVAILNLQFHGQKLSIIQVYAPTEAANEEDISYFYETVRRARELAHKDYIIMGDFNAKIGKPRHEEFLITKPFGLGIRNDRGQKLIDFALETKTAIMNTYYHKKPNRRWTWRSPGGAYKNEIDYILSNIPQKFHNVEVLNINYPSDHRPVRATISLEKIKISRTRYKTNQCASLKYESEILRFRLNLQLHLLRADDQNLKDTDNIQTQYNKITNAISRSLEETHKEHNSYRHKKISLRTEKLMTRRKELQKTKNKTRSIRNEISALYKLISKYIRQDYAKYRQDTITKHLQVSGSTKKAYKELAQNKTWIEGLKSSGKQSIITNRNDIINMATEFYKSLYSKKTSTYVDITPSSNISNNENVQPITESELITAIKNLKTDKSPGPDGIXNEALKAAGHSIQLSFLNLVTPPQWSESNIILLIKKETQxHGNYRPISLPSTVQTFFSIIxRRISSALEKGNPEQAGFRKGFSTRxPHHTLELLKKYQEKQRTLYIAYIDYQKXFDTVSHDSVWKSLKNQGVNDKYIQIIKNIYKTNTSRIKLESIGPRFSIKRGVRQGDPMSPKIFIAILESIFRQLDWKNLGLNIEGKYLTHLRFADDLVVLAESSSELQYMVESLHRASIKVGLEMNTTKTMVMTNSARKKITVGNELLKYTDHYIYLGKQISFERKSNEMEIGRRIQHTWNKYWNLREVFKSTLPIYLKTKVLNSCILPCLTYGCQTWKFTSKANNLIVSCQRGMERSLLNIRKIQKIRHTKIREKTKSIDALEYARNLKWKWAGHVARLKDQRWTARITAWEGPQGKRKKGRPISKWEDDIKAIAGPRWIQVAQNRTKWKDLEEAFTMFNGFLPNISEEN
>RTE-2_PPac_pol#LINE/RTE-RTE 113-2899  [Pristionchus pacificus]
MACLLLATLNCLTLCQDSRIVELEEALIKIKCHVIGLAEVRRPNEASMDLAKSGSVLYHTQRLQNRMAGVGFIVSGDAKRKVVRFGGLTPRVCFLDIEVSNNSLLRIFQVYAPASSRDDSEYSEFVDQLEEAYHAPVSGSHRYRFVHKIVMGDFNGKIGCRQLGEGSVGAFGYGDRNIKGQLIVDFCERLKLKVGNSFFRKRPSRKYTWVAPNGRTANEIDFILCPKGVELRDVGVVNQFDFTTDHRLVRASISFPCRFPRRLNGLGFGDSHLDRNLFKIGLGVEIRKIGGNLEYGKLVEAINGASKIATIVTPRKGCISQATKDLIARKRDLKMHSAGLSRLQWLLLNRSIRLSFKNDRERLYLDYVSKAIENGKSYKKAAAKVAVGKGRIHKIRNEEGGWECTQAGISRAFKTFYNDLYAGDGGSSYRSEKERDPFIPLCIAEVEHALRHFKSGKAPGRDGVTGEMLRAGTDLLAPMLTGVFNNILTGGIPEGFGDSRTILLPKSGDLSLIKNYRPISLLPALQKALTGLINKRLAPVLDNRRSWEQMGFRGGHSTVDAIHTLKTVVANCADHHLPIYLLFVDISKAFDSVLGEAVFKALERDGVPSEIVTFLASLSRDSKSAIVVNGEEVEITVGRGVRQGDCLSPRLFTAVLDMAFSRLQWDKKGININGRFLSHILFADDAVLISHDERQIQSMAIELERELGKVGLKLNGDKTLGMTSKGNAREVRVAGKVVGLKNEVIYLGCGISIDGKDGMEIGRRIQAAYGAFHKHRSFLINRSIPMVHKRRLFNGCILPAFLYGCETWALTEAQKERLSVAQRRMERWMVGCTVLDHLSNERLRGLTKVEDVVRASLKRKWLWVHKVANDYDLKWSRAVIEWTPRGPKRRRGRPNARWKDLFMRTVGPTFLRQARSHEWPAMHIRAYS
>RTE-3_PPac_pol#LINE/RTE-RTE 95-2887  [Pristionchus pacificus]
MTIFMALLSLATLNCLTLSKDARIIELENALDKIKYDIVGLSEVRRKSAGEMDLSWSNGRLYHSARLPNHTAGVGFIVSGSVKQKVVRFCVLTARICFLDVAISDGILIRVFQIYAPASIDMLEYSTFIHEVEQAFHQPVTGSHRYRFVHKVILGDFNGKVGVCEPGEXSVGNFGYGNRNDKGQIVVDLCERLHLRVGNSLFRKRDARKFTWVSPNGRARNEIDFILFPKGIRVMDVDVVNRLXFSTDHRMVRSFISFPFRFRRGRNRPAKGDAHLEKDLFKFSLEAEMKRVGGRVEYGTVVSAVQTAGKIATTFTPSGKRVSQKTRDLLIRRRELKIDSVGVSRVEWLLVNRAIRESFKADRDQGYLXYINEAIRMGKGFKRAPVKLAIGRERISRIRNGNGDLELTQAGIVEAFQSFYNNLYKGDGGIGYREVIERDPFVPICASEVDQVLRHFKSGKAPGKDRITGEMLRIGVDQLVPTLTTLFNNIIMGNIPQGFGDSRTILLPKTGDATLPKNYRPISLLPVLQKALTGLLNKRYAPVLDRNKSWEQMGFRQGHSTIDAIHTLKSVIAHCVDYRLPIYLLFVDISKAFDSVFTEAVFRSVEMEGIPSEVVSFLAGLSQGSKNALVVNGSEVEIKVGRGVRQGDCLSPRLFTAVLDRAFRQLDWSKKGICINGRFLSHILFADDAVIISHDERQIQSMAVELEKVLAGVGLQLNGDKTIGMTSKPLPRIVKVAGKVVKLQEKVVYLGSGITINGTDDWEITRRIQAGYGAFHKHRSFLINRGIPMAHKRRLFNGCILPAVLYGCECWALTNAQMNRLSVAQRRMERWMVGCTVLDHVSNERLRDSTRIRDFVRDAQKRKWFWLHKIANDDNWKWSRSVIEWFPTRKRRRGRPMTRWSDIFRKTVGPNFLNEARKASWNAMHIRALT
>RTE-4_BM_pol#LINE/RTE-RTE 1-2712  [Bombyx mori]
VRRMGERIISQPDFLLYHIGTTPGHHGVGFIVKKYLEKSVEEFIGISERIAMMNLKLPGYKDSWSIVQIYSPTEQSDLETIEEFYLDLNNTIQERGHXNXIVMGDFNGQIGAKRPGEETVLGPFTYSNKIRSRNGELENNLTILNSVYKKNTTKMWTWISPDGKTKNEIDFIMTNTKNCFTNFDVINKFNFNTNHKLIRAEIKSVQPKKPRPRQELTIGKLSKHQMAQLVANLRDKFTDFKKNTNTMGTQEKYNWIENIINDQVQHIDKIRSEPRKWLTSNTMKLLEQRNQLISAKEGKDRRRHLAKISKDIKESIRTDRKKSRMEIIEKHIAKTGGIKKAHRELTXSNDWIAKIKNNSGEWHHNRTNILGIATSYYKKIYEHNTAQDNIYLAETSSIPNIIQTEVTKAIDSQHRDKAPGPDGISNEILKESNEIITPVLTDMFNEILKTEIIPRQWTESNILLLYKKGDKYDIGNYRPISLMSNIYKVFAKVILNRIEKILDEHQPIEQAGFRKGYSTIDHIHVVRQVMEKYKEHQCTYYIAFIDYSKAFDSLFHEKVWESLKEQGIEHKYIRLIKNVYSQNTARIQLEKKGEPFRVGKGVRQGDPLSPKIFSAVLESIFRALNWENLGINVDGVSLTHLRFADDIVLFAKSSEDITRMINELSTESEKVGLKLNPEKTKIMTNGERIPINLGNNQIDYTDEYIYLGQLITDDNPVLKEVERRITNGWRRYWGLKEIMKDKNLHMNIKSKLFNTCVLPVLMYGSQTWALSQNTISKLASCQRAMERSMMNVKKSDRLSNRIIRSKTKVIDIGCKIRRLKWRWAGHMVRGKDKWSKIVTRWYPRESKRKKGRPQKRWDDDIRQVAGVTWNRVAQERHEWKRLEEAFVDWQTDLQKIRKIQIIG
>RTE-4_PPac_pol#LINE/RTE-RTE 121-2865  [Pristionchus pacificus]
MSRHLYIGTINARTLASRDKQTELELALDRIKCDVLAVQEARIVGCASFNLTSSGTLVFHSGGPTATHGVAFLLRPHLAGGAVFRGLSPRLATLLLPNQRLFLVCAYAPTSSYDDKEYDDFMDQVEAALRSAPRGHTPVLVGDLNCRVAREPGNERFVGESASPTPNSRGRTFTEVCVRNRLRIWNTFPKRRHGRIWTWRSPNGSTYHQMDFIAAPPSARVVNCGVVGRFDFNSDHRLVRMCLSLPDKVKHKRCRERRDLDRSAFTVNANLLASVPLARPNTAADAYRTIRAFTETAATDCWRVRRTPPWISPATRNLLQSRSQLQSNPQAAVQYSIACKAARSSLVTDIKNRKEAQARHAATMGRSVTRVMQNLQSSKKRLLVPDPATGELSQEVTKAAVQRFYEDLYTPAVQLPLGVPTRVPDPFPPFLPDETRHAMSLLKCGHSPGSDGILPEMLFHSRDHLAPIIALLLNRLVAGDLVPSELTEAVVSLLHKKGDPTNIGNFRPISLLTVTLKVITRCILKRFEAMLEETESSTQTGFRRGRSTLDNLHSVKQVAEKASEYGIPVYLAFVDFRKAFDTVEWNACWQSLEKYGAHPILVTLLRRIYESSSTLIRVNEDLVRATVKRGVRQGDTLSPRLFNVVLRAAMDEIDWESDGIRIDGKNLCHLEYADDVTLIAKNRPELERMLKKLMEACSRVGLEINASKTHLLTSCTTTRSPILIDGMKFDFVSSATYLGGRISLPLDHSDEIEHRIRLGWFAWSRLSSLLTSRLLPMKTRTRLFESCVTSTVLYGSEVWALRASDKERLSVTQRKMERKILGISLRDRWTNERVRDCTKLRDWIREGLKRKARWALKIRQMDMEQWSRATTVWTPYNSKRPTGHPRTRWRDDLTRAIGAHWWNATYEEFRPILI
>RTE-5_PPac_pol#LINE/RTE-RTE 114-2867  [Pristionchus pacificus]
MPPSMGRHFYIGTINARTLGPKDKQTEMELALDKIKWDVIAVQEARIVGCASFNLTSSGTVVYHSGGPTASHGVAFLLRPHLARGAVFRGLSPRLATLHLPDQRLFLVNAYAPTSSYDDDAYDAFIDQVETALRSAPRGTMPVLVGDFNCRVAREPGNERFVGNSASQSPNSRGRTFTEALVRNKLRAWNTFPKRRHGRTWTWRSNDGVTYHQIDFLAAPPSARVVNCGVVGRFEFNSDHRLVRMCLSLSGKVRQKRCREKLDFDRASFTVNASLLASLPLASPTSATDAYCNIKAFTDAAAANCWRKRHTPPWISRATRNLLALRHQLQANSQGPVAYAVACKSARMSLAEDIRKRKEAQARQAALMGRSIVKEILKLQSTKKRLLVPDPASGALSQSATKAAVKDFYEDLYSPAVQIPLAVPPHSLDPFPPFLPDEARHAMSLLKCGHSPGSDGILPEMLYHSRDHLAHSIAHLLNRLVAGDTVPCELSEAVVSLLFKKGDPTNIANFRPISLLTVTLKVTTRCILKRFEAVLEETESATQTGFRRGFSTLDNLHAIKQVAERTSEYGIPIYLAFVDFKKAFDCVEWSACWNSLWKYGAHPTLIHLLRRIYESSTTLIRVNEELVPVTVKRGVRQGDTLSPRLFNVALRSAMDTIDWEEDGIRIDGRNLSHLEYADDVALVAKTRPELERMLRKLMDACRRVGLEVNATKTHLLTSCKTTRAPITIQNLTFNFVDSTTYLGGRISLPLDHTDEIEHRIRLGWLAWSKLSHLLSSRLLPMKTRRRLFESCITSTVLYGSEVWALRSSDKERLSITQRKMERKMLGVALRDRWRNERVREITKLRDWNREALRRKARWALKVRSMQMEQWTRATTFWTPYNRKRPPGKPRARWRDDLDRAIGNWWNTPHEDFAPILI
>RTE-6_PPac_pol#LINE/RTE-RTE 119-2914  [Pristionchus pacificus]
MPLSTFRIGSLNTRTLKSDVRVAELEDSVCSVQFDVIALQELRRCGQTSLTLAATGHLLVGYGIRSANGTGFLVNKTWASNCLFHKVNDRLSYLDLPAIGLRIINAYAPTSSHSDQEYENFLNDLATLVTSSTDRVHLPGGGRGHVVVAGDFNAKIGSRIAPDEEYVGNHGLGKRNERGQTLADFCCELNLYAHNTRFMKRETRKWTWESPNMATRNQIDFIMSRSRSNVQDVSVVGSLRFTTDHRLILARFKFETKGRKFYHKPRSLLQFDRRIFTAKIHATTVNFKTYDTLSKDISSIGKESMIPVQKVARFSAKTMHLFSERKKLRDNANTAQKRIEFSLTSKALRVSIHEDLKRKHLEVVRDAVRYGMSTRRAIQSSQIGRSQLTQLNKPDGSVATSKSEMSSVVQTFYNELYKRTLRPTRLPLRSNEPFLEFLPSEVTYAIRKLKENKSAGPDSITAEMLKSGIDIFVKPLCDLFNKWVIEEIVPNSLPDSVISLIFKKGSQLEISNYRPIALLNLVYKVFTSVIDTRIEGTLNSAQPHEQAGFRRNYSTTDHIFTISELISRSVEYNFPLYLVFVDYLKAFDSIEFGSLWKALLNQGVHAKLICVLKDVYERGKVFVRLGKEKVRIHVERGVRQGDPLSPHLFNCVLEEAMKQVNWNQYGVNINGKRLHHLRYADDLVLISHDPKEVQNMLGDLCRESRKVGLVVNIQKTVAMSNRTLYPFTIDHQSLKYVTNFIYLGVRISFDQDTMLEVNRRVGSAWKGFNRFYNFLTNRRVEMGFKERVYKMCIEPALIYGSELWSLTKKVRNRLVVVQRSMMRKMAGITRMERRSNEWLSQKVPLPDVRIQAMLRKWNWARRLALTEDERWDKLIMEWTPIDRTRPIGRPKTRWRDELTELLGVNWQSICRRDPNAWNLAIIQQAQSLNIE
>RTE-12_SP_pol#LINE/RTE-RTE 3-1328 Fragment [Strongylocentrotus purpuratus]
KEATMIILHKKGDKRDLKNYRPISLLSNLYKLYTKIITNRLEKILDNNQPREQAGFRRGFSTMDHIHTINQLKEKCQEFNIPLCVAFVDYEKAFDSVETYAVLKALQDQGINNAYIKILKDIYSDCYNTVRMHKASNKIMIRKGVRQGDTGSPKFFTACLESIFKTLDWSSKGININGENMSHLRFADDIVIISHNLNDLEIMLQELDDASRLTGLKMNMKKTKVMAGSAKDPKQIQVNGTKMEQVEEYIYLGQRFSLQDKNQDNEIRRRIKAGWQAFGRYSTIMKGKLPLCLKKKVYNQCIIPAISYAAETWTLTSKMERKLAASQHNMERSILSITYKDRKTNKWIREQTKVQDILETVKRRKWNWAGHISRRNDNRWSSAITHWTPYEGKRNRGRQRKRWRDELQQFWGQTNWHQQALNRGIWKHHAEAFILQWIDNG
>RTE-13_SP_pol#LINE/RTE-RTE 493-2161 Fragment [Strongylocentrotus purpuratus]
MGRPTQTSMTDTNKQRPPVPSSSFVPDQGGGPIKQGAGGAKNPWVRTGHQWKLNIATYNVRSLLQEEILLELEEELQGIKWDIVGLGEVRRRGEELTVLKSGHHFYHIGKKNKSEAGVGFLVHKSIAGNISEIKGINERLAQITIKINKRYKIKIIQVYAPTSTHDDEEVEKLYEEITDVMKCGKTQFTIVMGDFNAKVGKREEGEESTIGPFGSGQRNDRGDRLLEFAISNKMKIMNTFFKKGASRKWTWKSPGGNTKNEIDFILTDNPHIIQDVKTISKVNVGSDHRMVMGKMKINTRLERQKLLKPKQSSINLEKLKEKRTEFQLELKNQFQLLTDKCTDEEGNRSLETWTDLLVEKTQETAIKIAGKKPKTRENKISESTRKLMEKRRNMKAEGIGIQNVEYVETCKTVRKKLREDIRSYNTTMIKSTIEENRSLKKTYKKLAHGKQKITSLLDSNGQEITDQDQILQRIEEFYEQLYNSNKETEDPGEPQEEIPVVTDWEVQHAINQMKRGKSPGPDNILIDTIKEGGDTITEELAKLYNACMQTRRIPHQ
>RTE-14_SP_pol#LINE/RTE-RTE 335-3208 via tfasty with RTE-13_SP_pol, 4 frameshifts and 5 stopcodons. [Strongylocentrotus purpuratus]
MEGCNKTGQKSELNICTYNVRTLRTEESVESLLDELEGFKWTVIGLAETKDKEKDxHNLKEAHGSTTGKNRRxQNAKGIGFLIHNKFKDYVKEVKSYSNWVAAMKIQLAGKDEMCIIQVYAPTSYYDDITVEELYEDIKKKIGHTDNSGTYTVRMGDFNAxIGQREKGEENFMGSFSYGERNRRGERMIEFAMEHKLKVNNTYxKHKNRYWTWESPNGVTRNQIDSILARIVxNCGDITNVDISSDRRMVGVNISTNTKLASQAIDSFINKRKTRINIMKLKEKKEEFQLKLHNRFDGLELEDMDIDERCDMVTSAMLEEAKSVAPTEKRKIVRSEEDKEIEELDQRRKEIRLKESKTTTEKVEYAEIVKLVKKKRRRRNRRKTSKLILETLESGRGPKTIQKMASKKXRMSKLKQKDGNITSERSELLEICADFYQELYGSTKKQPKDHIDISSRXSDIPPILQREVEEAVNSMKDNKAPGNDEITSDIIKQGGEETITQLLKLFNQILEKQQIPTTWKEAKIILLYKKGDKADVKNYRPISLLSHLYKIFTKVIQNRIKDILDTNQPREQAGFRAGFSTTDHLQAINQLIEKANEYQLQLCLGFVDYQKAFDSIEHTDMFDALRKINIEEGYVRILEDIYTNAVARIHIDNDVSREVKIQRGVRQGDTLSPKIFTATIEEVFKKSHLNGGINIDGETLTDLRFADDVALISTSTKDLEDQLTGLNRESKRIGLTMHKEKTKYMTNYDTDENIEIEGRTLERVSSYKYLGQTLKMEDTTKEEVMMRVKAGWMNFGRYKDMLTDKNIPMSLRRRMFNQCILTTMTYGSETWSLTKDLEQKLVTTQXAMERKMSHLSLRDKINHKVIRQKTKVKDIMEKVRESKWRWAGHVARLQDNRWTNRLTEWQPRVGKRRRGRQKRRWRDDLTSYMGTAAWTRTARDRREWKFHEEGFVQRLDEL
>L4_pol#LINE/RTE-X  1-1773 RTE group, but L4- and L5-pol seem to share a C-terminal 200 AA not seen in other RTE pols [Mammalia]
DSVSMVPSGWTQSVVYSIFXKGXSLPPPNYRPTXLLDIPSKXYASFLLDKLQVWVSQANILHEEQXGFRHGXSTIDHCYTLYHLVEKSVRNNVRLFAAFIDLSSAFDSMDRNQLWAKLYELNIDSWLLMLLQSLHLNTTXRIRVGRNGLLTDQIPILSGIKQDCVLPTLLFNLYLNNLIXLLDELDACPPAIANRKTSILLYADDMVLLSRTRSGLXRQLXLLXNYCQKERLXINXXKTKIIVFGRHSPTFXWLISNNSIQQVNSFSYLGVHFAANSSWRAHQEAXLLKIRYSTGALLRFFYGRGGRLVTPALKIFQAKIISAMLYGVELWGLDRAFVXVLEQIQNCFLRKILALPAGTPAAHLRAEVGWPSIRARXXVRLLNFHXRMSTLPPARLVSKAYGSXLNQQHRIPALQALVREXNLELXAIQLLSKARLREXIFKEDXLKDMLSIHSSRYSKFYPWIKLDHQKATYLDHISLAPCRXAFTELXFNVMPSAFIEGRYKKQPYEXHFCIXCKXVVEDIVHYITQCPLYKXPREKFLLEFSARKSFVSPEELVCFLLSDNENYVTXHVSLFALAARKLRAKFXAQP
>L5_pol#LINE/RTE-X 6-2072 RTE group, but L4- and L5-pol seem to share a C-terminal 200 AA not seen in other RTE pols [Theria]
TKXEPXXRKVWXNHYSKIFGVLSWACSQNFXIDITNLPQWXPVTTGEIKGLSASLSSGKAPGEDVLPPEXFKQFPDWWAPILAKLFTQISKAGVSPAEWKQNIVFPIFKKDXKQDPGNYRPISLLDVASKLYGKHLLNKLEDWEKSNNVIHPEQAGFRRGQSTTDHCVTLRYLAQQSIXXPXKYLYAAFVDLAAAFDSVNRNRLWHKLXGTNIDRRLLFLLQQLHSDXAARIKAGISGSSTEVISIDQRXKQRRLLAPLLFNLYLNDIIKXLSGPEFFLLSIGSRKISILLYADDIVLLSSTTYVGLKKLLSKLYDALKEESLNINYSKTKVMIXRKKPSXFRWAINNQPIDQCWVFKYLGVYFNETLSWKSHTKIVKATVTKTIGAILKFYRTKGGHLIDPALKLFHSKAVAQILYGAEVWGWDDTQITNLETLQNSFLKNILHLPPSIPAALIRAEVGLPSIRAHVHVAIIKYLKKLKVSPENHLSKLCYVQLQNCKDWVYKYHRLLQLYSISEDSQVISQAGTNLRDWIFDQNAXSDRLAILDTNFSRRYRIIKSDHSRSFYLVNLTFPKLRQAFTAICFQTMPTAMIEGRYRRTPLAQRTCICGAPELEDLPHYLLFCPMYLEPRQKFLGVILTSIHSRTIPEKVSYLLSDTDTYVTFRVSYFALAASKIRAKAILDTTVKTTR
>RTE-5_SP_pol#LINE/RTE-X 1064-4777  [Strongylocentrotus purpuratus]
EVFGPLSNLSNLSNLSNLSMLSLNVNGLKSKLDTGLLDLYSKNFDIICLTETKTDTPDLLNTYLSEYKCHSIQKSSNKQQYGGFHGMCILMKNSIFECSTRIQPTLSESVIWVKVGSELLGFPFILGAIHLPCEGSIHYYHEVFDDLCNDIVDIKSKHNAPFCLLGDFNARTGMLDDFLDVDDFVDQSSLGACDGDLDMYDTDIFNSRSNNDTVVNNNGKKVIEMCQSFDLRIVNGRAGSDHTIGKYTCFNKNGGRSTVDYAIMSKRLFPLVKDFNVDIFDRCLSDVHCPIMLTLQSEDILNSDSLRNESREARTGPDKSNYLAFQWNSNSMLDFKQHTKDYSEVMHKYVDQLEADVNQEGIDIFYSHLCDMFLSTAKEVGVCKLKHHKKDGSKSGNSQSKQSQQPWFDTECRDARKEYLNVKNRWKRKVKLMRNSDVPVDSSNYDGAGKSYRNLLRCKKRLYFQDLNKSLRSLRTKNPKEYWQLLNGKNERKEKDIGNVSLKDFLNHFSRLSYKEVDEPEPPIIMQELSQENVCLDVPITLKEVDMMIKKLKNTKACGRDSIRNEFLKSCPLEILQVVVKFFNVVLDSGIVPTEWCIGIIIPIFKNKGGNTNPDNYIGITLLSCLGKLFTSILNYRITQFFEDESLLGEEQAGFRSNYSITDNVYVLKSIIDVYLKNSKRLYCAFIDYKKAFDLVDRAALWVKMFRMGVKGKIFNVIRNMYRCAKSCVANEGDMSSLFTCNIGVRQGENLSPLLFAIYLNDFQQSIGNSYKGLEFLNTIIKNKLPFDGIEIYKELFSLLYADDTIILAETPEELQKALNAVKDYCDTWHLTVNASKTKIVVFSRGKVRRIPEFVYDGGVLEVVYDFVYLGVTFNYNGNFKKAIAKQVTQARKAMYSMLVKAKRLHLSVDTQCHLFDHLVLPILLYGAEVWGYECIDQLEVFQRKFLRTILFVNKCTPDCMVYGETGRGKILDKIKCRMIGYWVRLVKGKQSKYSLILFKFLLQLQSEGQSLVNIKSQWVEFLADSFDYAGLGNVWRAQGEGYSAAWIMNTMKTRLSDMSIQEWSAATWSNRICTNYRMFKNELVYEKYLQILCQKEAITLSKFRCRTHRLPVNKGRFDANVVDDLQCPLCTPTDIGDEFHYIFVCPFFQNERKMYIPNNLCGSSLRPSALHMDKVSNTAHACQLKKLAKFVRIIMSYFSKDSSVDGNTVNDSSQISNVVRHTRSGRRVNCPVRLDL
>RTE-16_SP_pol#LINE/RTE-X 1-1722 Fragment [Strongylocentrotus purpuratus]
DHIFVLKSLLDIYLSKRKRIYCAFIDYRKAFDMVDRVSLWHKLLRSGVDGKVFTVIKNMYSQAKSCVIVDGQMSEAFQCDVGVRQGENLSPLLFAIYLNDFEDFLSKHFKGLKFLVENVCADILDKEVNKDLFLQLYTLLYADDTLILADTAEELQVALNALSQYCKIWKLSVNAMKTKVLIFSRGKVRKFPVFRFGEDEIDVVDDFVYLGVQVNYNGSFKKAISKQVSQARKALFSMSLKVQRLKLPLDIQCELFDQLVLPILIYGCEVWGYEDLSQIEIFHRKFLRSALCVNKFTPDCMIYGETGRAWLANSIKHRMVSFWLRIVKGSPSKYSVKFYFLQRLISQNVDMSTSFKWLSCIEKILNHAGLGIVWLKQGEGFSNSWILSTLKLRLNDISKQDVMATIWTNSVCLNYRIFKEDCLFERYLVLLSKKDRITLSRFRCRSHRLPINNNRFKEAVNEISIECPCCDMHESGDEFHYVFVCPFFRKERELYLGRKVIVKRPCTSHMLNLFSCSGIGQLKKLVLFLRIIMSYFARLYTCKSEQSNHMSPIKRNVTTRSGRLIKQPTILDL
>RTEX-1_ACar_gag#LINE/RTE-X 153-1598  [Anolis carolinensis]
MGNKKNKKKRTRTSPETLKHQKPSKQLKIDDLFVETVSTPELNSLFTDNSFLSLDKENRNSGNNSTAYQEGVSLDLCRGDTPGTSSLITELKQPELLQQTNSTSALMQQCLLTAKTVTFIFDKLKNVANQIEQLRLSFDSFVQRNTALRESTVQADGMGPRREATDEKPCTKATRGYSLTSTKCNRILQANQIMLRIAHNNINKGRWRSFRAIRTSLGQLLHIHPQSVDLLKVEWLPQVSADKKIVMTFEQSTLPSMLMKMKLFLLKFQIAPMRVFRDLDISPLITPMHGDDMPVEVGRPSLLAPRETSGRNRPQSSPAKADSKPTQNQSTILSSATCGDQRDIDFGLDHLETVATTIGDMVEPLVGLMSTDESPQAEMDLEVGPVNVNDLLELNEEDETPTLSPIQVLVPRRDDSRPPIHDLPPREGMSVPSTSRQNNTTAEEIQQLQHLRQTRKEKRDPHNNCVFNGDIGGIVPASDTN
>RTEX-1_ACar_pol#LINE/RTE-X 1599-5066  [Anolis carolinensis]
LSESSILIQPGQPEHLETVRPIQIVTWNVAGWKEIVDCELVRFLSDFEIIALQETWLVEGVDPIQLPGFQCWHTPAQKRGNKGRASGGLCICIKEELQWQGERLCKGDDIHNILAIKFSYKEMELILINVYIPPLTSSYYSPDAWVQLEIIVEELTVAYTQAIIILLGDFNAKLGPSIHDLAQYGGLPHDFIKNHPKWYSRDKKINRSGISLASLILKCNLQILGGKNNNNNYNYVYPYTFHSSHTSSALDFICVSTGKANLFSQIKVLLREESDHQPVCVKFLGPSDLRPNNRNDNWIMANTEVIQNKRLAWTKVDMTAIANSLKTEDITNWNSIIQSHSADWQTVSNAFTNICGSLKEHLVTKSTPKGPYLSRAPWFDKECQLQRTKLRLAMRRAQGQHLVNPQLEMLTLRREYKKLIKTKKKNHTVSIWSGLECSAKSHNSAIFWHTVAGILKERKFTFDIPIPAEDWENYYSHLFASTEPTETQSRGKDLSIKALPLWPPVTEDEIRCIINNLKTNKAPGEDYLPAELFKTHLDWWAPLLAGLFTHINNICQIPVGWKMAIVVPVYKKGNKKDPGSYRPISLIDIVAKIYARYLLNRAECWEKEKHILVEEQAGFRQNRSTIDNCFVLNHTIAKYVSRGKQLYAAFIDLSAAFDTVNRETLWKKLTDLNMEPRLLALIKALYTNTFLKVRFGTQGAMTNSVETYKGVRQGCILAPLLFSLYVNDLPEQLKDPEVHMPKLCKTHFNILLYADDMILLSYSQVGLRRLLRRFNTYCHNNALTINKSKSKIMVFGKRHNRHRWFLDGESIEQVCTFTYLGIVFSETGSWLPHHQRSSVRARVRVNQLLKLTNHSQPGSLDPLLKVYKAKVTPMLLYGAEVWGLNQVPLLEQSQSQHLRSFLGVDRTTPAAAVRAELGVYTVDGLSKIRAYNYWIKLIAMANDRLPKLCLLEQIENQHQSSWLVHLTKYISSCGLPIRYPNLLEELDPKIVAQRVLDIEGQKDIATLSKAGSLKWLSRFKHTFQTARYLKTEMPKHLRRVFTRARFEQLDTMVKHGRFNQVPYNERFCICGASEVEDIAHVLFSCELYKKERHQCLGPYIIHKTHWDPHIKISFLLAGQNPKITHKTALFLFKATQLRIAYLESIGVNCAGDADI
>RTEX-1_BF_orf1#LINE/RTE-X 33-704  [Branchiostoma floridae]
MPSILYPDKQVHKQPGMTIPEAIDIIETTPFSNPKCIVYHVGTNDVKQERAASGVTENMRRLVATTHDKFPNAAIVLSSIPPRNDRHLMEIAKQVNAFIHILGQECGYISVADNDNMEENGSIKRVLFKDDGYHLNRGGVKVLAANLKEAIHPTVGLGDKLQRTSEARTRACGGTIYQGYNMTGLWNDGVQHTNPADGDVTLSPHSNPTVATTICTWTGFRQT
>RTEX-1_BF_pol#LINE/RTE-X 957-4490  [Branchiostoma floridae]
MTMSRLQMSPHSISIGFWNVHGLGKKLEVNDFRNSLEKLDFFSLLETWSNDTSEVDLQHYQHFSSLRNKQSKARRNSGGIIFYFKNKLAKFIRRESSTSESKDILWIRVAKELFGLSRDVFIGNVYISPVNSSIHKRSEESIFDVLEQDVARFTSRGFVILGGDFNSRLGSLKDFADETPIDSDVEHIPILNIPRNYSDKNPPNTFGKDLTDLCYQSNLNILNGRVLGDLSGRFTCYQPNGCSTVDYAIASSTLFHNINIFRVHPLTEFSDHCMISLNIKTLIQESQNETPKINMRPLPDRFVWGPDSSEKFINALRSQALSHKLENFNLSTHLNSILNADIDKEVHKFQEILEIAGKMSLQIKHNSKQKKLRTNKKWFNKNCFEARKELRNLQYLLQRNPKNPFIRGSYFRKKKEYNKLIRKRKKDYETDCLMQLQNLQENNPTAFWNLLKQFKNANSTPKALEEIPPDSWVTHFKALHEKRRLERQNFDTEFEMKIKDNLKALEELNTEQGPLDCQITEAEISSAITALKNKKASGEDMIINEMLKAGHSLLLKPLVALFNRTFFSGKFPQTWSKSYIVPIFKSGRKDDTNNYRGISISSCLGKLFTSVLNKRLSSFLEENKILKPNQAGFRKNYRTSDNIFVLKTLISKYTQSRNQLFACFVDLSKAFDSIWHEGLLFKLISKGISGRFFDMLKSLYSQSAASVKTNIGLSENFPVKIGVRQGCVLSPSLFNLYISDLADELNTGDFDAPLLNTSEVSSLFYADDLVLLSTSQNGLQNAIDKLGLYCNKWKLSVNINKTKIIVFNKKGHMFSNLKFHILNEDIEIVSSYCYLGVVLTTGCNFTTALKTLQKKALRALFSIKTTLGETNPSISVYCKLFDACVVPILTYGAEVWGKIGLNDKSPIEQVHLKFCKSLLGVRKNSSNLATRAELGRYPLWIEVYTRLYSYYKRLVKEVPRNSLQFEAFLVQQDLHSRNIPCWFSNVSKILEESGFAYLLINSDRNTSFAQSEVNQRLKDNFVQNFYSEMNSPGMKENQGNKLRTYRKFKLTYEREKYLEITNFSYRRAMTKLRISDHPLQIEAGRYTRTPPDDRICMFCNKNVRCIENEMHFVLECSLYNDMRNSLVNVKRVKEKYTNITKVDMFKYLMSSTNYDILEELCKFVYSCFKRRDEACRK
>RTEX-1_CR#LINE/RTE-X 1866-5705  [Chlamydomonas reinhardtii]
WDGGRGGISVWAWNAHGLLTGGSCKLHDRNINKAARAHDILVISEAHLTHRVPDGRIELDGYSVFRAHRSQEAIRSDFGGVAVYVRECLMGGVMHLRTDVSLTGCEVVWMRIRSKDGDSLLLGCCYLAPETSRVYKDGGKTRVAREATAEAVFGRLQQAISAMRQNGEEVLLVGDLNARMPAGLSDIPDLDQLAALEQVEHITALGGALTSMPSPEDYAGLPARASQDKHANCFGEFLARMCRSQGFVLLNGRAPGDESGRITFPKGEEGGSVIDLCIASPTLFQSVTSVDVGELLRWARRGAGYASDHRPVTLTLSWEVEGQASTEGQAKAKRPRTAFNAQKSERYSNLFEQDESPVVSKLTELKGHLEQGRYSTTEAVEALSKCLSGVLEKAFGQSRPAHLRETETPWWNEECAVARAALVQAKVALGKPVVKEGERWEAMRAARSVYCRAKRRARAAHDAQVMRDRVARCRADAKALWKMIEERCTSKSPITADGFRDHFARLLNDGAGTVDDSAAKRLLAYCCDEDGWRDSMYDDEEWAELDSILNSDISIDEVTHALERLPNGKAPGTEAAPSECYKYAKTQGDPRADPPIPPVNRVAPVLEVLFNRIWRAQDGDESFPEQFTTTVLTPIYKRKGDVKTPGNYRGIAVGGALAKCYASILLNRLARAGELFKWRHPAQAGFRRKYGTAHHLFVLRHLVTKHTRAGAPPMIVVQIDFEKAFDKVPRPLLWLRLREKGVSGRLLEAIQAAYEKVMMTVKADGKLSAAFEATQGVKQGCPLSTELFGLFIETLAEYIDAHEDWLDTASTAGTPELNGKKLSLLMYADDVSLLATTPERMRHLLSLVDTFCEAFGMKANVAKCERLVFTSDDQERRRLNDECSGLRLAGQPIPAVDKARYLGLVYGPGRAFAACRETLCEAARRAMYALTNRLNRLRIFSPDIRMRCFEVQVRSILAYGCEVWGPDVLAEMLDGGPPPRRRDSNNLAHGPFEACLKDEAVKLQVQYMRMTVGTKRPSHRLLFAELAQLPLHFFFAKLCIGFYNRIAVQKDSLAHDALIDEVQDALVHPEGDGWCARLFRFISAHGVDVWQGRMHMIRPEREESRAGSPLPEGQIVSAFRESLMKAWKHERLQSEPSTFPSDNKQPGVQMSKYKHWMGLCAEGAAPLTMQGHSRAFIPVAHHKALMRFRLCCWPLTANRAYGRPREERICPLCVANEVEDENHVLMRCTAYDQLRLGSEIDFTGGMQAVMQNADPARLAALLDSIWEHRSISTPIRGPN
>RTEX-1_DR_gag#LINE/RTE-X 1-792 Fragment. [Danio rerio]
SFGTPSHIIIHTGTNDLRAQQERVGQLVCRVAEKAAETCPNAKITISTLLPRRDIHPDTINRVNADISRGCALLPNVHLTHHTSITVRDLYDHVHIKKDKVNVFAKALKDTAWGRQTSAHTTNRLSPPYHMENMKQPPPGHHWGPPPHTRHFQPTQAQQQRPRPSSGHSQKTQTMPGPPQRETPTAGHHQRPTPSNRLNPRQVNNSRRSPQHPTTSTTAADSTPRPALLPQPRNYAQALKGPAKPLEMGEIRQLLQYISAQLT
>RTEX-1_DR_pol#LINE/RTE-X 906-4364 [Danio rerio]
MTLSISLWNIQGLKSSAFGLKSLNTEFQANIKNKDIIILQETWSKTNTTTHCPPNYREIILPSQKLNTTRQGRDSGGQIIWYNSKLHKYIDTVKTGKYHAWLKIHKDLLSSQKDCFLCAIYIPPSESPYYSEDMFDTLEKETSHFQAQGHVLICGDMNARTGQQPDFTNAQGSKYINSNLPGIQTSFSHLHRNNHDHIVNKSGKELLQICRSLGLYIVNGRIRGDRLGRFTFCSPLGNSTVDYMITDIDPSSLRAFTVRELTPLSDHSQITLYLKKTITNPCTQPNKLFNIRKPYRWAENSAEDYQNAVNSPKTQQILDNFLVNAYAHTKQGVNMAVKDINNIFESTAKQAKLKVKTRQNNPPKNDKNWFDQECLSIRKHLRNLSNQKHRDPNNAEIRLLYCETLKQYKQTLRTKKAQYTQKQLTTIENSINSNQFWDNWKNLIKNDHEELPIQNSEIWETHFQTLFNKVETDTNPKQNQITKTLATLESTIKDNQNPIDFPITIMELKDKIKSVKPKKASGPDGILNEMIKQTSPKFQSAILKLFNLVLSVGHFPDIWNQGLITPIFKNGDKFDPNNYRGICVSSNLGKLFCSLINARLLDFITTHNVLSRSQIGFLPKYRTSDHIYTLHSLIEKHTVQNKGKIYACFIDFKKAFDSIWHQGLLYKLIESGIGGKTYDLIKSMYTESKCGIKISTKRTKYLSQERGVRQGCCLSPTLFNIYINELALSLERSTAPGLDLHDSQIKCLLYADDLLLLSPTEQGLQQNLQLLDQYCQTWALTVNLNKTKIITFQKRARAQGTQHTFTLGTNQITHTTQYNYLGLNITSTGNFNPAVNELRDKARRAFYAIKRQCPIDIPVQIWLKILESVIEPIALYGSEVWGPLTNPEQDLAKWDKHPIETLHTELCKNILHVHRHTTNNGCRAELGKYPLIIKIQKRAVKFWKHLKLSDPDSYHYKALQDRELSRRADPLSQLAQSFRVSETSPEELNTLLPLTQITHQIKNSYTHHWDTQTQLQSKMQCYLALKRQYTLADYLHTVTDKGLRNTLSRYRLSGHQLAIETGRHRQTWLPVEERLCPHCPQQPIETELHFLTECTKYSEIREKFYPKLTHTHKNFESLSNNEKLPILLGECVCCCVLAAQFVHSCHRLRNPQ
>RTEX-1_NV_gag#LINE/RTE-X 1-1950  [Nematostella vectensis]
MASEAASEHSELTKFLSYLPSKKQFKWNSNAKSLLEFCIKELQDGDQDALISHSSKENSEVYRFENITVNFYPSTKTVQLQGIGKDYLIKKLMSLLDYSGQTNQTTDCDIIEQESIVTEQETTDPVELSEPCSSKVALKDSSDQKGHDDRYQEFLDFKEMMKGFIEKFDKKLSDLSMDMNEQLILIKDLECQQKNSRKELIMEMDRKLDETKQDKVLADLKGLQSSHSKLGNKIRETKLDLEKCEQRLTFIETKIEMDAEESSDDDSEDEESGEPSDSEQVEQVERQINTQTILRTTVASSSSIVNSPNTNDLPQLASSGNIESPINGNQQQIVDSSRTTRGETEPRPAQTATENTTRGNATLAETPGNILMLSDSIFGGIIQSRFARGRYVNKQYVQGGTIEMLDHLSTMGCEAGNKYEYVILHTGTNDIRELPTEQICSNIENIVEECIKLWPQSKIVVSGLTFHLRDHAKNDIIDVVNSASERLSSRCAKVYFADNRGVCLSRNGDIDESVYRDNVHLNNQTGTKKLVASLKSQIPGLRRQRDPAVTRKFPVNNRFQQRRQGAPSGSTGIPQARYQAPTGNPQAYCPPTNNPMFRPFPGNPQGYQQPTTNQLPTGRQQYPMNSQQQQLEQALKIISECVRLAYRNG
>RTEX-1_NV_pol#LINE/RTE-X 1981-5457  [Nematostella vectensis]
MPGSLTSRNWDFGRSLRIGTWNIHGHKSKELGNKTKLAEVVDIIQQHDIFGIVETHASQNTDLAVEKFKHFIKTRPKSGKKISGGIALYISNKVAEGVAYLPSENRNIIWCKLKRNYFGTEKDIFLGTVYFSPQNYEQTNDEDYMSDLEEDIIKYLGQGDVILQGDFNARTSELTEHINFDEDRFLSLPDDYELDVPSPRYSEDHYTDSRGRSLIELCSESNLRIANGRIIGDLTGKKTCYQYNGTSLVDYVISSNRVRQKFQFLKIHPLLPHISDHCHITYNIKIGNKITVTQSKSFAKHARIFCHGTNVKENVDSILRSDIYRSKLDNLVSHCDTNCPDTASNITSSFTKLLVEISEKAGFKYGDKQKCQKTNAPWFDEECRSEKANLKRCGRKICNSPNDSELRRELFWKKKKFKKLCKRKKYQYRASGIKNLDFKDSKKLWRSLKNLFSVGKDKKQQECDLEIESLHSHFMDLNKTTTTNLSIPKCRDQTGPLDSEIRLEEVKLAIENLKNNKAPGHDNILNELLKYGKDTLLPYLTRLFNIIFRSGVFPQEWNLGFIIPIFKKGDRSDVNNYRGITLLSCLSKLFTSILNSRLYDYLVQKGYLKKEQGGFRKKHSTVDSIFILKTVIDRVVKSKPKKKNNMLFTCFIDFRKAFDSIPRDKLFAKIQQAGISGNFYEVLRSMYSNDISCGKIGDSISESFRCMVGVKQGCMLSPTLFNLFLSDLPDTLAKSSSAHILGNTKLNCLLYADDLVLFSETSSGLQDLLNRLSIYSEENSLKVNTSKTKVMIFNNIGKVMNNYQFLLNREQLENVKSYKYLGLVFSAVGNFNLAKEELKKTALKALFKLRKDLGIHFRSDINLTLKLFDALIKPILLYGSEVWGADNKSCVDDRDPLESVHLKFCKMLLGTGKTAVNNACRGELGRYPLCINATYRNIKYWTNLRSKEEALSKVVYTECVNNPHVSYWTHKTKEIIFKAGFGFMWLYQNETDPTLFLDIFSKRLNDMYFQKWHGEIFNDQRKNSNEMNKLRTYRTFKDKYELENYLVAIPNVKHRVALTKLRISNHQLQIEKGRHTRPYTKEKDRICPTCKNDVENEFHFLVQCQTYKELRNSVIQNLQRNQITQKRLFNLLINPPTQLAGIAARYISECFKLRETLI
>RTEX-1_SK_gag#LINE/RTE-X 478-2505  [Saccoglossus kowalevskii]
MGDSRNSISLRSKENVQNPGEMRKFIERYFGKKVEIKFNHNSVTIRSNTNMKEVWMKAIKAVFTEDKYTYIKKGEVKSEQLRIADGDNTVTIKMYDNGTLLIQGNNYNQWMETVGREMFSKIQELLGLNVNFESAEVTEDTVSKNTRARRDPKKTIRFNVEEYELEASTIKPQKTHYDESNTKNDSQSKGPTSTKQRPTTPTRSTKPNIANTPSRIPCRISKTPIVNNGGSLDNTELAATLSQMFKSIQQIDKNYCNIMRSGSITQELTDKLMKVEDNLAKQSRDIQKINKLLENKLRKDEATKPGTGTTIQNGETIATLMSKIDRIERSITSIEKSFINNDKAISKITALQESTKSCVEKEKEILTKLQQDRHYLQQQLEKRGEEIDILQSENDKLRKDIRELRHDTQDNYTRNQYSVLAPEDNSDDSQTTGNTSTNSEFTTVTKKIRSSRKVQTLIIGDSMLKDINARGVYRNTQVKTLRGRKIKDITDHIQKASIVKEVENIVIHVGTNNLADKHKVDECMEEYTTLIDTIREKNPTVKISISSVIHRKNDVATNKIIDNFNSRLKKINGNNVHFINNNNITSETHLIDAVHLNKRGTAELVKNIKDTIGPLIGVNRQEKTNHRYNNARHRHNRSYDTPKEVHRPRNNKEQYRPRDNEEQYRPRDNDNTTDQ
>RTEX-1_SK_pol#LINE/RTE-X 2620-6057  [Saccoglossus kowalevskii]
MCCQKTRKNINISQRRSLSLSYWNIQSLARKTQENDFIKDINCHDIVGLGETWLDKHSASSFNIPGYYNYSITRNNHTGGGLTILIKQDIKQGVNIIENTSSEDKFWCKQKKNFFGQLKDTYLCFVYNPPLNSKHCNPDFFEHLEKDISKFSQFGNIVILGDFNSRTGMLKDYADFDDTFLPLPFSPDNNDTITVHNNRDTTVNAYGKALIDLCKNCDMRILNGRMPGDSSGNITCYHYNGVSTVDYALSSCDIIDYFDYFKIHDFTYLSDHCQISCQLKLNKIIKLHKTNNNDLHNLPKSWVWDKLSVFNYQDNLASTHSQHKINSFLTNKYTLDSKGINDAVNNFNSLITESADRTFNKKSNKSKKQKPKKKKWFDRDCMVLKKDLVKTAQLVNKFPFDTRLRDLFYRRKKKFKKLIKLKKKQEENLIVNKLINLNNTNPNQFWKVINQLRESTHEQASHISPEEWNRYYSKLNACETNNNYHNNIISEITSLQNREPLATKLNSTITDEEIKLAIKKLKSKKAAGYDGYCPELLKQSSDFLIKPLQKLYNLILDSGIYPDIWNISIISHIFKKGDRAEPGNYRGISVSSCVGKTFCVIMNNRIQQFMDKNNILHSNQAGFRKGFRTTDHIFTLKTIVHKYLKQNGRLYTCFIDFQKAFDTIWRNGLFYKLLNSGIDGKIYNIIKYMYLNTKACIRFGNKTSSVFETTKGVKQGCVISPMLFNIYINDLNDVLQDSSIDHVSLNDTKISSLFYADDLVLLSTTNYGLQKALDILSDYCSNWKLSVNLTKTKIVIFRKRGLKTHDKFLYLGNHINCVNSYNYLGVTMQSNGKFTEARQNMADKANRALYAMLRHIPPECNCKTFIYLFRTCILPVLIYGSEIWGIEVLDENKWDKTTSEKLHLKFCRNILGLNKFGANLACRAELGCFPLLIDTKKNLIKYWLRIQGLPDKCLTKQAYYEQMKFNLPWCSSVQNLVIDSRIQTSKTDLNIKNIDKTLKENYITFWKQNVNQENTKLRTYAKFKNTYNFESYLNCLPKKHQVCMSRFRTSNHCLAIEKGRHTQPKTPIEKRICNLCSQNKIEDEVHFLLECDRYKYIRHELLTEITLTNAGDKLSNFIFLMSNKDSKAIKCMGTYLLKAMEYRKL
>RTEX-1_SP_pol#LINE/RTE-X 1159-4719  [Strongylocentrotus purpuratus]
DNDGYSQLGVACWNVGGWSDTCSIRKSILVKCDFDIICLVETHLTKSQSISVPNYVWLGHDRLHLHKNARKGSGGVGFLVHRRILRSFSLKCVEKSYDGIMWLQLRDKRQNDSFYICICYLPPENSSRGGHAEEFFDKLFSGLYKYKDLGKIQICGDFNARTGGLQDFIEGIDPMRQRKTIDFEVNSQGRLFADFCVTSNFCCLNGRYTNDNFTCVSYKGKSVVDYCIVPYHDINLYFNFDVLLVADLLDKHSIPVVGSVPDHSILCWHFYRKTVCRNSDNQMHSKPSFQNLSKRYQLNDINDSFMSDEESKNAVSELISKLNCGLSSQEHLDDVYYGFEKVIQKCVHKCCRERKTSRPQKGLPHSPKVWWNDNLQSLWNCVKCKQKEWLKCKNTEGKKVMFIDYKNAHKIFDKAVRKAKRAYQYKKINALDAMVNKDSCSFWKEIGRIGSDEEKKYQNIPMEIINDDGEISEDYDNVMSKWENDFHSLFKDNGSGFDDGFLSHVNTQLKILECNVQESDTRGNDLNLPIELTEVTAAVKRAKLNKAAGIDGIVSEMVKNNASIQFLHALLSFCFERGISPTAWQKGIIHPILKPGMDEREPLSYRGITLISVICKIYCDIIRERLTHFLEKECIIKEEQNGFRKKRSCLDHLYSLYSMIENRKLCKKDTFVCFIDAKKAFDRVNRSLLWYKLRLIGVHGKLYNCIQALYRDTTCTVNVNGNHTSFFKVESGVKQGCLLSPVLFNIFINDLVDNVMLCNGGIQVLDTNIDMLMYADDIVVLAENENDLQRMLDNIGAWARKWRIEFNASKTQIVHFRQKSQAKTSALFNCNGEKLDVVDSYKYLGLWFDEFLSFQKGTRMLAQSASRALGVVISKFKLIGGSLFKTYKKLYDAMILPILQYASGIWGVDGYSVINSVFFRTCRFYLGVGKYTPNNAVLGEMGWDPPFYHQIQSVVRLWSNLSKLNSDRYPSKIFSWSKSLANNGVKNWCFRVKELFSKLQCVHVLPLANLVSTDNFVKTVSSSCKLFIENRWRNSIFDDKRKKAHAKNKLRTYRNFKQSLNTSKYVIECQNRSNRRALALFRCGCAPIALETGRYQNVPYEERYCVFCNSSNIEDEFHCFMICSAYNDIRSQLLYDIIEHDHTFSDLSTYQQFIYLISADSLSSLIASFANQILTTRQELLYYLNE
>RTEX-1_VC_gag#LINE/RTE-X 3-1028  [Volvox carteri]
LACSAEAMRDASIRDEPKCPTLRMKKKGNKRTNSPRSEDCSIAKAQKSEIRTAARQGLGSAATEAMGDSPVTLESLMTFIKSEFERFNQNWQQQLPVKVEQLKGELKKELKEEIMGELQVDQTEKLFRPGRLLVRTKPSLVEQLPQKLRQSLRARNQYAEIGVDISPRLDTRAAAPTLKLTEVGRFKGMAMVDVIFHADSRGFVIQALLHLRRQLGANANNFIIQDSLTKRGLELKTQRTATFIWLRDTEKRDVRWVHGVDIAVKNNGTWQPYTGPWQPSHAPNGNGSATGANTTSIGGGTGASGSGGSGRAWRGSDRGREQGGPPGGAPPSPGGTTMDTA
>RTEX-1_VC_pol#LINE/RTE-X 1029-4826  [Volvox carteri]
EANRRYEPLRIVQWNIRGVTDWKLEQRELLRLALRYDIVVLTETHGSLVGRLSRLIPNGSCCYLAGKSRERGGVCVWVHQRIARHVTHCTSTDAPRGMNSVWLRIHGEALNFGGNGLVIGACYAAPLGSRAYTANGRRPQDSVTRRVMDRVRSLVRRYQQPGDEVLLMGDLNSRVAEIRELPDVDGDAELADYVQAELGQANLLRSIPPRLSEDKTDNVFGRALATLCQEMEMVVLNGRVQGDLQGACTFWSPTGNGSSMIDLFVASPALFFKSNQLRVLDIPVALTGERVGSLMSDHCPVSLELGVLREGVNPTRRDKSTTRFEVQHKGRYESMFAADDAPAVRRISDAVSKLGGELDSTAFVEVLTRACSSALERAFCKRCPAPKRVREEKDAPWWTQECAAARSDMLLQKAHMRAQGLLADEQARHIFTLLRSRYQRIRKEAMAAHRVSHFTSFLEECKGNPRALWRQLNQGATPDCPIRDVNSWRDYFDALYNDEINAFNEVRADYMMNLVNGCSLTIPRGWAGESCLARNQRVAAAAALSAPFTLAEVIAALKMLGNNKSPGLERAPAECYKYATRKVGEKEEMVLAPYLLRLLEHIRSTGDYPRQFEISALTPIHKKGDVMDPKNYRGLAVGGALSKLYALLLDRRLKAWGERCGARSPYQGGFRPRRGTTQNLFLVRHLTDRCRKDFVNVPGQALFVCQIDFEKAFDRVNRELLWVRLEERGVTGSALDVIKRCYNRVEMRVQVDGAKGEAIPSTQGVKQGCPMSPTLFGFFVEGFADYIDALDVALPDAMAAHDTPSVEGRRVPLSLYADDLSLFAMSLRRLMSLLRALREWSEAFGLTVNVQKCELLFFHPNGQVRRQVYALSGYNLVTMRALEEGLPIFRPVTWKTRARYLGLHFGPDSGFASCTDELFSAGQRAMFALRNKLRRQGLLLPSVGMKCFNAQVRSVLSYGSQVWGADQVLAMLEKGYPANEAPRSCYFDVAIRDRMVKLQIFFMKQLVGTSVPPLQLLFMELGQMPLQLHWAESVFRFWNSLVEDTSSVYHSAFRQEIRLALVTNLQFDGWGSKVIRILNHLEHDWGEEAVGGGIDMRVRRYSACKLDVEALMDTLRTRVNDDWANDRLAVDPRVFVTDGRKPGVKMGRHKHWMGPPKPYAGYIPPAHHRALIRFRLCVSDLAVNSESNRAREHRVCAVCRSNGAIEDEKHFLVECPAIMSARQKIWDLGVPVNANIRDIMQVDDQRGLAKAIFEMFRSRHEHLTT
>RTEX-2_BF_orf1#LINE/RTE-X 234-2912  [Branchiostoma floridae]
MADNSEELYRTLGVASNASKEDITEAYKKEVANYENASKLGRKEPLFKEADTRYREVSKAFVVLADAARRQQYDAGLPASNSTKTVKISKERTDYQVQINKQSVTIYLPNHLTNPWLKTCEEHYRTLATVGDKEENGHQIKTSFVDTRSGQPVGSVSIKFFETTQKLLIQGSAYLLWFAEDYPELKKTVTSLSPNNSNGNAHIQASMPDPDANSTPASPASVAVNLPPCPTCQEPVESDICACNTVPKALLDVNSNNVNGTESQTGPTGDHDEFNMANTSVTPDYSIVQESMTKLETCLANCITDKKLFEDSVMHKLSAIEARVKSCERPHTCDGFTTEEKERLSSEISRLDKEKRELELKVKSLEQRHERLSTAVRKAEATNLKRQTSTVETQTSESNSDRAERLLHEATISVHNRFQVLDSNDGISHGSVKHSNNNESSCLPRRAHSQPNQSPRETRRTHCESNQPPCVTRDRKSSQHDTMANNQHIKARSNQQNNDAQLDLLILGDSNTRPLKTDILYPNKRVTKELTFNLREAIDYIQTSTLPDPKTILFHVGTNDVRDARDPTTVSEGFRELVQITHDKYPQSHIVLSPILPRDDPNLQAIGDNVNAFLKVVADETSYVHIIDNSNFSYSGTTSIKKSLYNSDGYHLNRNGTRVLAANIKRTVNSLIGLGQYLSRGSQPVACDQFATSPKRTTPNRSYRDAVLGAPAGGPPEPSTRSCPPPHTQPARKQEHSSAPSQDRRSSNHTSSDDPVNGSSDRCPAPDRRPPPFGLHPPVGPWGPPPAGPWGPPPAGPWGPPPAGPWGPPPVGPWGPPPVGPWRAPPHLPPPSHQPGPWGMSPFFPSPSHLLGKSGRFPDSYPCSAQNSKQQFQPPAWLWQPGTPWRGPPSMW
>RTEX-2_BF_pol#LINE/RTE-X 3155-6685  [Branchiostoma floridae]
MKVFPGGNKSFCCWNVHGLGSKLDDLDFLSHVNNFDFISLIETWSSDKTKINIPNYSYFHLHREKNKRARRYSGGVIFFFKDQYKHYVKQLPSKSTDVLWVRVDRKLLGLSKDLFICSVYISPSTSKTHKFAENHVIEILEEEISKYNTEGFILLGGDFNSRLGNLNDFVEEDTFHENIPNNPSNHNQDRQHMDKAPPNKFGRFLTDLCIQANLRVLNGRVAGDLQGNFTCHQPNGSSTVDYMIASQPLFEHISLFRVNPLTIFSDHNMLSVIIRTAPFIHNNKTKNNNPNTKPLPKRFRWNENSAQKFLESLSQPHIIDKLNAMSVKETKNAKADIENYVSDLNSVLRDVGHKSLFVRVNKKRSQKARIKKWYDKSCTEMKRELNNLASLLEKNPSNSYIRGKFFRRKKEYRKLLRKKKRDFQQQIMDQLSSLREKDPNGFWKLINKLKPDKTQQNSQISNEMWLEHFSAVDKRSTDAINNSETELSTPVNTQIHPQSPLTPVENSTLDSPITAEELNTAISNLKNNKSSSSDMVTNEMLKCGKQILQNPLLHLFNSCLQNGYFPDDWSLSHIVPIHKSGDTSLPDNYRGISIISCLGKLFTSILNNRLVNYAEQYSLFKPQQAGFRKNFRTSDNLFVLTTLVSKYLSKNAKIYACFVDFSKAFDSVWRAGLFFKLNNLGIGGKFLKTLKNMYSKTTNCIKTNGGLTAPFLTNCGVRQGCNLSPTLFNLFISDITSEFDDICCNSPSLHNRKVPCLLYADDLVLFSESQQGLQSCLVRLERYCKHWNLKVNLKKTKIIVFTKGGRLPKNCFFLFNGNVIEIVMSYCYLGTVVSTAGTFKANNKHLRNKGLKALFSIRQSLDKADCPLAVKNKLFDSCIKPILLYGSEIWGTLKSPKNCPIESVHLKHCKYSLNIPKTASNLAAQAELGRYPIHLEASLNTIKYFIRLSKNVPADSLQADALLCQMDLEASGAKCWASDVRNTLEKCGYAFVWQNAQSTISITPQIISSIYQRLKDIYFQTFLYEIHNDKRVATAKNKLRTYRLLKQYYKEEEYLKIANVRHRSTITKLRISCHKLRIELGRHNHTPLEQRICQFCSLGKVEDEVHFTMDCPLYNSDRNILFDYVLSKYPHFRHLNSKEKFTFLTAFDKPTLTNHTASYIYAITKKREEVECHRID
>RTEX-2_DR_pol#LINE/RTE-X 2-2833 Fragment, via tfasty with RTEX-1_DR_pol, 3 frameshifts. [Danio rerio]
NGRVRGDSLGRYTYSSSLGSSTVDYMITDLDLFSFSAFTVKPLTPLSDHSQITLYIKRNKNTNIFSQSSKLYNIKNNYRWVQDSSEKYRNAIEDPQIGLLLDKFMENSYPDNGDGVNLAVENINYIFDYLATISNIKTTKKTFKQKQENEKWHDFDCKTIRKNLRQLANQKHRQPENTDLRLQYYEELKKYKNTIRKKKEEYTQKQLKTIEESVDSNNFWDNWNLLNKKKREQLTIQNGDTWKNHFEKLFSKINMSTEQSLIYNKLTHTEQIFGKYQNPLDYPITEKELLDKIQVLPTKKASGPDGILNEMIKNINHKFQLAIMKLFNLVLSVGHFPDIWNKGLITPIFKSGDKSDPNNYRGICVSSNLGKLFCSIINTRLIGFLTEHNVLSKSQIGFLPNYRTSDHIFTLQTLIDKYVHQNKNKIFACFVDFQKAFDSIWHEGLLSKLLESGIGGKTYNIIKTMYSNNQCAIKIGNKRTEFFTQGRGVRQGCPLSPTLFNIYINQLAMLLEQADTPGLTLYDSSVKFLLFADDLVLLSPTEEGLQQQLDILHSFCQTWALTVNPKKTKTLIFQKKTRCQGKKHSFTLGMTKIEPAISYTYLGLKISANGKLNLAVNELKEKARRAFYAIKKSTQIEIPIRIWLKIFQSVIEPIVLYGSEVWGPLLSHEFDKWDKNPVESLHAEFCRSILRVQRNTPSNACRAELGQYPLLMRIEKQSVKFWKHIKMSDPNSYHFKALKNQEMDIEKSLLIQMVLKLQTQTNTTNMTNSRQHQDTDMLIHKIKPNQIINARKEEYLIYWNEAAGKQSKLQCYLDLNRDYTTATYLSAVKDSKLRTTMTKYRLSAHSLTVETGRYRQNWQPRESRICPHCAQAEVETEEHFLTHCTNYQHIRETFYTKLQSIYPQFTELDNKTQLQYLLGEKNECVLLATQYINACHKKREQNQ
>RTEX-2_NV_gag#LINE/RTE-X 2-1762  [Nematostella vectensis]
MADIVGITEHKKLLSINKKKQFRWSGDSDQLKEFLLSYLEEGNNDKFVSISRNGATSVLKFESVTVNFYTSTNTLQIQGAGKDGYISKLTDLVNTNSGNNKNAETETDQAEAGEEISQSSKKQDEEKGEKAMHDARYEEIEAFMATQREFNSKIESQVSKNTIEIGEQSIDLEDWKQKIKNGLSDVKMHCESQIDSLKFEISESIKDVAKQVSNLSNKVTSEFKSVKNKSASTAETILKILGDLGEIKDQLLKTEETVAQIHETTQSTHSREQTDAIEVCSQETSESHRIEILDQSRQSGQREAIDINRQYASHRNSRLETPRDTSSHPRTQQRENRPNQPSSAAQTSGSSNGPVLLLGDSVLRGINNRRFCPSRFVNKQYVQGGTQEMEEYIDSLTKEDKNDYECIVVHSGVNDLRKSRATDIADNMQRCVQKLKSRWPKANIYVSGVLYSLKGDNVKVDDVNYYYEEICRNNQGLCNFINNQKVTADRFGNIDEDSFYDDIHLNNRVGTKKLVTNIKVQVGLRSEDKESNREGQQARKFNRQRRQRPPWNSSYNEAFPTLPPPFRALDALAEYFKRQGFAHRPR
>RTEX-2_NV_pol#LINE/RTE-X 1786-5286  [Nematostella vectensis]
FTCNQKKIRFGCWNLNGFNSRVVGNMLKFNDTLSTIKRHDIFGIVETHANQNSDLKINNYKHFVKHRDSTRYKKSGGIAVYIRENISSGVKYIPTDNENVLWVKVCKNIFNLQKDIYLGTVYLSPANGRCNNYEEDILEELEFEILRLSLKGDVIIQGDFNARTGILQEFALDDEQNDEFMGLPKDYQIDIPNNRNSQDSKVIDSRGRNLIETCTALNMRILNGRVVGDLEGKKTCFRYNGSSVVDYIIVNNESLDIVDYFIVNPLEPHLTDHCSLSCSLNLKFTFKQKDNSENVQLSELKRLRWNNEIGSESKLLFESEEVQTNLNAALNNNCVDTSVDLFTETLLSACENAGLRYQNNDIKESSVNKMWFDKECKNEKENLRSLGKLLSKQPDQRELGAVLKEKKKSFKKLCRRKKYTHYNNIVNSIDFRNSKNTWKQINRIFNSNTHKQSHQIRPEEAAVFHQHFEQLNATIESQNTMEEVEKTRINNRQGPLDHEFTELEITNAIKSLKTGKAPGADNILNEVLKCGEETLKKPLQILFNKILNSGEYPSSWSYGLIVPILKKGDPSKPENFRGITLLSSLGKVFTSIMNNRLYNYLVERKIIKPEQGGFRKEHGTVDSIFILKSLIDKYVKAKPKKKQNFLFTCYVDFSKAFDRVPRHKLFDKLERSGVTGRFLEVLKSIYTNDKSSVKIRNLLTPAFRCYNGVKQGCMISPTLFNFYLSSLSEELNTVRNCNDVELNSRPISCLLYADDLVIVSKTATGLQKYLDKLSEFCDEAKLTVNLEKTKIMIFNNSGKTMNNYLFKYRNSKVDIVKSYKYLGVHFSTFGNFSLAKQEIKKVGLKALYKLRKEMGNHFRDKITLTLRLFDTLVTPILLYSSEVWGTDCNDKLEKDPIESVHTRFIRWLLGVNRYCSSNACRSEVGRFPMRLKAKCRAIKYWQKMINSDHSKLAVLAFLDSLENNSKVTWVHKLKNILERAGLGYIWLDAPNTSINLIKMRFEDIERQVWLSEIHNDSRRDPRQKNKLRTFRTFKVVYELEKYLTQINNVQHRIAVTKLRLSNHNLAIETGRHAKPYVPPNERRCTICKNGIENEEHFLVKCPTYNAIRKAYYSVIKDKTNINLNAMTSERAFLFIITMDQRNEIINRETAKYIFDCTRKRFECLKE
>RTEX-2_VC_gag#LINE/RTE-X 18-1562  [Volvox carteri]
MSQPDVHMTPISPTPKLARPVTRVLFDLTERKDRNVRRKIIGVKRRSATVNVFTPGRKTPGPKQLEEHIAQSCRPFLDGCISTIKAEFQSLLAGHVDRCQQTSDDMKHRINDLRSLVEEQAEVVKSLQERNAALRQELDATVGERRLTTQRLKELNERIEALETERSTARSEPIITRSQSADAKALDRRMEALEKRLAEHAASGPREQAVHCREMTENVDSVTARVATLEERFNDWERTRTAPADGARCTGATGGRRMGPKAAPPAKQDQQDPREELHKEQQERPKQQQPKQQPRPNRAVADTTTSKAPKVTAITTRPHEVAASCRGFGMTAGAPAPRPPKALAETTSSTDGHIDRGALVIDGLPATWTQEEVIQKLQLRLQQLTSMKVAFLDCTVEAHPNVAARSSKRTTQRVRITTTPAAYYALYSLRKQLGLNAEEGADESFPAVRVSLALTALGESYKKGYQDVFRHLVDSKRAPSWRGTHLMALTEPDSGVWAKIDIRKMAAELRQAAK
>RTEX-2_VC_pol#LINE/RTE-X 1563-5360  [Volvox carteri]
GARRGGNSIRFLIWNIHAFSAGKFDQIKAIRGLLNHDVIILTETKAPVNRTRAKEQLVLQGYSHLACTRAPRTGSRRSGGVSVFVRDELAPCVREVGLTNTPVGVEIVWLRFHSVLPGGRALLLGAGYCSPQGSSVYSSTDGSGLAYSEVPDAVFGSITGELDRLRCMGDEVLITGDFNARTAAILDLPGVNGIGAHSLVGVPRKNRDSGLNCFGRRLAQMCLDTGLAIVNGRAPGDVPGGFTYSNSTEGHSSIDLCLASYGLFEQINTLKVLRSYLWGESNVLSDHHPLILRLHAVLRPGAARGRKPHLARERIPIFDISRKGRFTELFREPDGIITETINSLKEKLVEGAPCDESMNDLRTLINKCARETFGGARGMEKSVKRDWWNEDCAAAWNDMMSFRKEVRDPVSGKLPDLHRTTWKAKHRAFKKARKAAIQEFEMEDMRRRIKDARFNPRGLWTWLRGGKPPPCGISDINAFTEHFSKVLNGTGETRQCRNEGIQFRWLDEDQVTHRRELAAWLNKDFTEDEIASGLKAMRNNKSAGLEGTPAEYYKYAIRETEGQQPVLVLAPYLTVLFNRIYGAEYPREFTTSTLSPVFKKGDVSCCDNYRGIAVGGPLSKLYANIIGRRLNNYCEGNRLRAVSQAGCRHGFGTEHHLFTLRHLISKHTVAGARPLIIMQIDFSKAFDSVDHETLWDFLMSYGLHGRILDSLKASYADVKFRVKLGNKLGPEFKVGRGVKQGCPLSVTLFGLFIEVFAHYIDAHDANCRVCLPSRWSTLREQSVSLAGGDLTNLLFVDDVSLVATGHDRAECLLGLLEAYCKATGMAANAAKCEVLIFGGATRERKRLVEAEYRLGGAGLRVLTGNETARYLGLHYGPGVQFSACTKQLLTAGRRATFGLSTLCRDKKITTPKLCMSLYNTLVVPVFSYGAQVWGPDFINVNFEGAMANPMVQEQRAYMRTVVGARSPTMVSLYRELSQRPLQFHWTNLVLRFWNSVVKRPGTLCHRAFVADLELALGGATECWASKVLAFLTSLGVEPPTNTRGNDLISYYTTLKLPVESILKVFAKRLDARWECPNTLGDPRVFPIGITGAKACRYMNWMGAAPSRGARLDWLEHTKGTMPQRLHHVLMRFRLGCWELEVNRPNGRERTARTCRLCDCGAVEDELHVFEECPAYKSIRAKYDGDLVLTGRSMRTTMTEAPPLALARYLSEIWEARHVALRRFALKRTRENEDDLPRTRINTNTTSMAPPAFTDTPALVCGTCNL
>RTEX-3_BF_orf1#LINE/RTE-X 179-2674  [Branchiostoma floridae]
MGDHAEDHAKTHAKTPKRKTPGTKFWNVNLNQLPADESLAFDYEDQDKSRFCGVKLRSKQLDKWITAHKDAFNETFERTKETTVTWKSTPGITCMTVQTTTATRKSGKGLLSVHFYHKKHGLMVQGQCTKWWMNILYPELLVNINAQVDMQTRSTIKDGVLRVRDAIDNFPTVTLESTTPKQVFNSSVHETPTLPKCANPRNLQDLQAPVSEDMEEEIQIVFDTSAKHSGNIEVPVSSDAEDQGPSRIEKRAKQVSDTKNGEQSELTTKAVDMPNLARLTAVEKSQRISDAAFGDLQKQFVDMTHNLNALRDELLTKEREREESQTNMLKELSTKVEAAQKSLESHIKKVVNKLQTNICHVQKDLVSQREELAKEKNATVQEMTIERNIWMERNRGLSIKVDALSASNAELQQAITIQDSELQYLFDRLKQIEENRTCRGCTKPTHTDMQNLNNVHDNDIPGDKQDNNAATNQTIVKQIANMLPSAHDNATIATQSREVPSPATSVKESATNTSTGSQHQRYEVRIFADSIFRDVDVKRAFNGKSTRLVRTSTVTAAIDCIKQINDSTTQQVILHIGSNDLDNSKLRNDSVSTTLNNTRRLLEVTKASFPKAQVAVSQVLQRGLNDNSTLNINIKNYNQEVLNLSRSGNFKYIKHRKLTQDRHLYLPDQIHLDPNSGTKMLVSDVKRTLYPASGTGAVRQSPAWTDTQAARLPASVNQRTPMRWQNGPSFPRPVPVPVTRSRKPPYQPPTVKQAHRNTAVGTGQAAPGLSKGANIGVPGQLGPTTRSGDTASGTGQVVRPAWWKAGKNGHPSPQWRQLGHRLRKVWNILIS
>RTEX-3_BF_pol#LINE/RTE-X 2963-6700  [Branchiostoma floridae]
MEKKSALVFSSWNIQGSVKKKFSDVEFCNYFRNSDIVCIQETWADNYVDFQFPGYSLFSSNRCRNKRAKRNSGGVATIFKSSFRKGITKLESSSVDSIWCKLDKKFFGLEKDLYLCNIYIPPESSKSIQVDPFDTLSIDICKFSNLGDIIILGDFNARTGSVLETYFSIDSPDDPLTKDVLDTKKRNNRDSKVNNYGKRLIELCSSADLTILNGRFAGDLKGDFTCYHYNGSSVVDYCITQRSMLTDIQYMNVNSISPFSDHCHISFSLSAKHSPLVLKEDSQCYNPKPTQFIWTDESKQLYLDTINNKDTHSKLRDFCNKTFHSSEEAVTSFTEILLDVSKSSLRIRRKIQNNKKTQIKKNKIWFDQNCWSLRQRVKRLSLELRKEPWKQETRTKYFTALKEYKKIIKHSKRNYKANLLRDLETLNEKNPKQFWSLFNTLDKEVNGTKYNGNIDPNITSKEWIEHFQGLNNLVKNNEFDSSFEKSVTDSLKHLDKNAQNSLDYPFTTPEIMTGLKSLKSGKACGIDSISNEMLKYGAEKICEPLVILFNTILSNNKFPSNWTTSILTPIFKSGDKSNVDNYRGIAISSCLSKLFTFLLNTRLQKFVESNCLLADTQFGFRRKCRTSDNVFILKALIEKYIEKKRGKLYVCFVDMKKAFDSVWRDGLFYKLLNLGVGGKFFNVLQSMYLNVNYTVRLQNGLSSPFVSTCGVRQGCNLSPLLFNIFINDLPQCFADKCDAAILNSKSLNCLSWADDLALISLSKEGLQNCINNLESYCNKWKLRVNVSKTKVLVFTKGSINRLSNKFYIYGKEILVTDSYTYLGIPLTSSGKFKAARKYLKTKAMRALFKLKSLLFSEKNIPIHLGMSLFNKFVLPILLYGAELTCFDQTSKAIKIIVSKQIPESSPKTVFSSFLNKLHLEGDLPATVRKSVSSDLTHTYVIHFKKRSDKDRLLRLASGMKLENDNFAIENIRLPSHISIPEFDTIDMSFQKFLLGVHAKSSNDGIRGELGTFPISINAEIQLIKYWHRLANLPEDSLLREAYDVVLSGEYDWTNHVTDILNYNGFGYVWTNPRLYHVNMLTDQLRLRLQDIYIQEWHSSIQNNSKLSIYSTLKERYGQKKYLSNVHNFELRRAITKIRICSHKLNIEAGRYSKIPRDQRFCPFCPNEIEDERHFVMDCSRYNDKRTELFTLLSACSKDFATLCSIDKFNYILGGDNPHCVQVGKYIHDCLYRRTNSVNDMLDPLC
>RTEX-3_NV_gag#LINE/RTE-X 13-1767  [Nematostella vectensis]
MAEMEELENFLSTNKKNQLKWSGNSDKLKDFLVHLMEEGSNEKLVSVNQIGTTSVLKFESVTVNFYLSTNTLQVQGAGKDVYISKLTTLATKSSSNAMNEIQTGAKVQPAAKSIEKENKKEEQVVHDARYEEIEAFMATQRVFNAKIEDKVTKNTIEIGEQSIEIEDWKQKTKHGISDAKRECECKIEMLRSELSASINDVAKKISSLTSKVTSEFKLIKNKSTSAAETILKILGELGEIKEQLVNTEQSLTSRITKSPCLNQTEGSTIEVTSPQDMNSHKDSQRISKDDSWGQITYTVDTKNRFETLQDEVQPGVPQSRGKRASETWKRQHNGRPNIKPLEQTSPTRQTRMDANRTKPETSEAKGPILLIGDSILRGIQQRRFCPDRYVNKQYVAGGTKELLQYIQTMDDDRNDYEHIIVHSGTNDIEKLRVNEIAVNMENCVNALKGRWPSSRIAVSGILYAPKRDGTKIDDTNYCYEDICKDNGAHFINNQRVTSDTFGNLDPEVFHDDVHLNNNIGTKKFVSNIKTRTGLRRDTERSERRARAPPYKQQKRTMWGSYDQSFPPLQALNALADYFRRHRPS
>RTEX-3_NV_pol#LINE/RTE-X 1784-5326  [Nematostella vectensis]
IYLTFTISSPEYSQLRIGCWNINGFSSKTFGNKLNQNDCLDTINKHEIFGIVETHANTNTNLKVTNFKHYVKHREGSNNSRSYGGIVIYIKNNINNGVVYMPSINKNVLWIKLKKTYFHLKKDIYIGTVYLSPQRENNNELLDDLEKEILNFSTKGDVIVQGDFNARTGALQEYVLNDDNSKKFFELPEDYETDTTNRRNSQDVNTTDSRGKNLIELCTAFNLRILNGRSVGDLEGRKTCFKYNGSSVVDYVIASNNIMNSINYFIVKPLEPHLTDHCSLSYALSVRSPSKGAEAERTDQNEGLTEFKRLIWKDGIQEKLKEILVSNDMQQKLSDALKNNSTETMTAQFTQALKEACEAAGMKYQNTKTVNNQNNKPWFDEECKTEKENIRSLGYRISKEPNNHSLRDALNRKRRIFKKTCKRKKENHYANIINNIDFRNSKSLWRQLKNCFHIGKSTKASPIETENAGKFFQHFKNLNATNEAQPKQNGRIDHGNYREGPLDYRISEEEIIKAIEKLKSGKAPGADNILNEFLKCSKTILKSYLGNLFNKILNSGVYPTMWSYGLIVPIHKKEDPSKPENYRGVTLLSTLGKVFMSIMNKRLYNHLTEKGILKTEQCGFRKEQGTIDSIFALKSLIDKHVKAKPQKTNNFLFACYVDFSKAFDCVPRAKLFEKLKAVGVTGRFLDIIQSMYSNDKSSVKIGSSITESFRCYAGVKQGCMISPTLFNFYLSDLPEKLNEKYRNDIDLNGVPLSCILYADDLVILSKSAKGLQEYLNSLEEYCKASELSINLDKTKVMIFNNTGKTMNNYRIFYGTYKIENVKSYKYLGLHFCPYGNFNLAKEELKKVALKAMFKLRKEMGEHFRQDIKLTLRLFDTLIQPILLYGSEIWGADYKGKLEKDPIEMVHTKFLKWLLGVNRYCSSNACRAELGRFPLRTKAKCRAIKLWLKLSNNNGNNEKLSRKAFATISNYENKNFWHRKIKQILDLAGRSDIWLTDTNTPEATYSFLQQRLYDIEQQTWLSSIQNDNRKDQAQKNKLRTLRKFKLSHNLEDYLTDVKNIDHRIALTKFRLSNHKLAIETGRYEKPYKKPNERKCLVCQTGKVEDEEHFLLECPAYKDDRDNLLDFLKTHAGINVRHHANKENNFVRIMGLSRNENVNRRLAKHIFECMKARNVKLDDNVR
>RTEX-3_VC_gag#LINE/RTE-X 25-1071  [Volvox carteri]
FTIVHAYHTTLATSQLSPSHWLCQRSRICRTAGISPQSPSKRVLRSGKEYPTPSAAALEEAAAGDSMTRSTQKEPSLDEIYKLLQTHATQTKASFDSLHSKTDALAARVDSLEKNIPEIITKKVETEMKQFEVRAAQFIIETVQSQLAGAPTFATDRTGSKQRRNLTGKSAYYDSGSLIAFGVPALATAKQAAEAITQVVSDASGGSLQASFLSVEVRTEKPRPNQAAPTYNITIGVTPRVRGMLFRHSQALKAIGITFRDDLTPAGRQLKQARNAQFLRLRDEGRKPKWLGPYIEYQRTDGMYYMVSKYDVSDVPPPPPQPPAGNGAAAGTSDGRVTTEGAGEGSAA
>RTEX-3_VC_pol#LINE/RTE-X 1078-4938  [Volvox carteri]
MSREAKDIRVLLWNVWGLSVAKLTDPSFLRIAQDHDVLVFTETHCSAQAGKPAKALALPGFQLHVAERACRGGAGPQTGRLHGGVSVYIRDAIARDVTLLRVDTDIAGCESIWLRLGGKQTGQDSTLVGACYVSPRASVVHHASLRAHESDGQAADEVFDHLATVVGALRQSGERILLLGDWNARVGGLPNHLSDIPDLDYLDDLGEEVGCPFVDGEAYRALLGVPRRSLDQEHNAFGRKLLELCRVSEVVILNGRAPGDTEGRLTYESSRGGGSMIDLVLASPSLYPCVRSFRVLPQQSFYREERRLSDHNPVSLHLASVWRPDRPPTRKPKPTFLVSEAHRYTDMFYNPEAPPVVGVRAVVDSLRAGQIGVTQAVDTIERILLGCFGDAFRPGPVSNGKAAWWNDECAAAKQAMLQYRSDVMKWGCAAPAMGHTSFQELRRQFNRAKRNARRDHRLRALELFIATCKRDAKTLWQRLNGKPASRCNVEDVSEWTDYFDRLYNASASFDEVQEARVCAILNCINLGAGSQVGAAWRDSEPVHARRSMADTMNGPFTLEEVEAALSSLSNGRSPGLGMVPAECYKYAKRIPREGDEDRVSVNVIAPAIRDLFQHIWDTGDVPDQFCVASLSPLFKKGDPRVKDNYRGLAVGCAIAKCYATVLDRRLAAFGDKDGVRCRFQAGSRQKRSTVHQLFVVRHLKSRYERPGSNQALYACQVDFEKAFDRVPRASLWQRLEERGVHGPMLAALKASYERVLQRVKVNGRLGSIFASLQGVKQGCPMSPNLFGFFIEVIADYLEARDGMDEWFNTRAHECPVINDRRLPLLFYADDLTLFATSLARLQFSLKLLIEFCAAFGMRCNVRKCEALVVAASVDVVKRAFEGVRLMLPLRTDGSLWHPPMVGSLLVPSPINWCGRVRYLGLYWGPASPFASCVNELLEAGRRAMFGLSNRLDENRVWAPAVRLQAFDTQVRSVLCYGAEVWGPDRIVSVLRLGKGVLPAGKSYFDLALEDGMVQVQRDFCLRCAGLKQVPYKLLYRELSQLPLQYFWLRLALCFWNKIVKSRGSVYHDVLVDDLRLALLSDLKVDCWSSKVLIILRWLGHEWPACDSVSQKVDVYSSQLIRVGEVLERLSAFLLSDWDQFSQGGDPRVFQGKGVSLCRYHNWMGSPSPAREGSDPTGYLRVYLPVNQLRMVAKFRLCCWPLEVNKGHHRPRECRTCQVCTSGKVEDEYHVLMECEAYTELRNRFLINVEDTDMRKVFLNTNPRKIATFLTEVFDERQQRALEPHGS
>RTEX-4_BF_orf1#LINE/RTE-X 220-2649  [Branchiostoma floridae]
MASKMAATASPDNGPTIRQLLHLTESASNDEVHEAYSIFVQEFTKEQEYVKKLRPAEKKTYRHKISGKYFSEVSAAFLSSMDTRNKISNPTGEVGNHRVTHNSCSITIDIPSNTLSSWKTVCASYYGVQGKDRVTAKGTKLSTQFSTTFKDSAQQPERELGSIHITVYSTHRLLIQGTCFALWLCSHYDTLQAMVLADAAERHPSEADYSGTVEQATVCAVCDKHEIHCDKFVGCDDCASWTHFDCTGLSEETKSLLKNTDKKYHCINCHIPQDAIPSTEQSEADQRHFAPPPHCTQADKNAKQSNSTMKGPNHQDDEKTETLQTAIMDLEASLAQMKLQSNTFECNVSNQLDMIFKRLDSSCPPAKQETEFKKLKEDNKKLQEENKKLCNRVKHLESLVTSLQTETTSIQGDMSEVKVCHSTLKVKVANIKEALLDQAVAKNNKKPDQNLVLDYAVNTSNRFDALQVDDDPEPNPKELIRSITNRAPSAKPRSQNSRPKSRPETKRVVIVGDSNAQKLKPDLLSPTADMPKPIWAPTLPDTLSALNKLSKEQPTPDTVVFHVGTNDVMSKSKEAVINEYETVISTTQSLFPSANVVISSVPPRRDTNKRPNVNEDIASINEHLKNTCEANTTLTFVDHPQLWLDRDHNVKMFVRDGYHLSSDGVKVMAYNLKKHATDPLGLQPKGQGQHRRMENQGRATHHNDKRRSTPRAPPKSERHASPRHGYDRPNYAMPRPSQHLPTSPPFLGPDPHAMGPYHPPPAPWYNEWPSAMEAYGDSYRYNANPMWNVEPAYNRGWNGFWTQGKTSRF
>RTEX-4_BF_pol#LINE/RTE-X 2653-6207  [Branchiostoma floridae]
MCQTRNSDSRNKLRQYSFRKDHGFSFGLWNIHGLGRKVDDSEFIDEIDGFDFFSLLETWHTGKLYFPNFLHFCSSRKKSKNAKRNSGGLVFLYKKQYSKFISKLESKTEDILWVKIDKQLLSTDRDIYLATVYISPNRSTVHSNRTYDIFDILEDEISIYSCHGDVIVGGDFNARIGTLKDYVDDDCPTDNLPEDYTFDNPLPRNNMDLSNPTPFGKNLIDLCINSKLRILNGRTPGDVLGKPTCHQPNGSSVVDYVLASENILLHKTSFFHVHPLTPLSDHCKLSLILHNNANNCSEQTTNNLPTRPHCKFVWGADSKQKFIETLNRYEYSSAIDNFLNRTYELTPNSIDSALKDLITPLQEAGKKSLVLHRSREGTHPRNKRPNKKKWFTESCAKARKDLKELGKLLSKNHRDPFIRGLYFRRKKEYTRLIRKTKISYKNSILQQLNSHPTNNPSVFWDLVKQFKTSDSIPAEDSIDKQALHTHFQSLYGRDSTPNVPETNNHFQTRIKNKLLELEEQSASFNSLDTVIQNQEIIQAITQLKNNKASGSDLILNEMLKCASHMLVKPLTKLFNLLLSSRYFPQQWRVSHIVPIHKSGPKENPNNYRGISVISCLAKLFTTVINTRLTNYLKENNLISPNQAGFRKNFGTNDNLFVIDTLISKYTNANKRLFACFVDFRKAFDCVWREGLRYKLLSSGVGGKFYSLIKSMYSNPQTCVKTKAGLTPLFITDKGVRQGCNLSPTLFNMFINDLVNDLDDTDCAPPSLHNLLVSCLLYADDVVMLSESETGLQRALDKLNAFCTKWNIHVNLKKTKVMVFNKTGRTVKNIKFSLGVESIQITNSYTYLGLILSSSGSYSLAKKQLSLKARKAAFSIKPLIRTSLSPKALLKIYDTCIKSILLYACEIWGKDFSNDKCPVETTQNRFCKNILGVHRNSCNQACRAELGMFPTDIDISVRVIKYWLRLKQLDSSTHPLQVDALLCQEYLMGNSYKKNWLHHVKEIVDNTGYSFLWNINYPTLDNKNICTLLKRRLTDMYVQTFFHQLSLDNGKLRFYKSVKSEYVMENYLYHNEFNERSAICKIRTSAHPLEIERGRYKQLPVHERLCTYCPMNAVENETHFISQCTHYETERKTLFQTVATISPSFYHLNDHQKTTFLLKAQNPTIIQNVGQFINHCLQRRSQTRQ
>RTEX-4_NV_gag#LINE/RTE-X 178-1458  [Nematostella vectensis]
MVQNILSKLERIEEAIVKADSTTAETNFEVAKIKEKLANEEATINNSIGNMIKNNMMVFKREQEQFLLQEEQRMSKALNEVGKLQGRVGSLVEEKTNLTKRIKSLETSKAELENRLSVLEKEHETVQNQRQQPIQRAAPKQEQHQQNPNASTLVQQQQEPKEYDFVFMCDSNRRYINRDELCQVHGTNKHTCSIIPCNTTERAIEILKNPTFRVRHGVIINTGVNDVESQPANIVAKKQQQMVHTAMSAFPGKSIIMCSITPRRDSLDEAVFYINAEVGENLSAEKQVILVDNGNLRKERFYRDVKHLNKEQGIRVLAGNIKNGIRRALGITKDRYQSKQLSSHANRAATQAGRSPPSKQAQRSSDPRLHSRKQPDIPIKNQLSNITRLLEQLLNPDHKVCFQQMPPGVSYYPIDLPTEEPRVGVF
>RTEX-4_NV_pol#LINE/RTE-X 1688-5125  [Nematostella vectensis]
MVRETQIEMTESTNYLKFCSWNIEGLKGKLEDPEFLSITKRHDLISLVETWLPQNSDLSINGFSTYSVCRKKPENSRRNSGGITILVKASIRKGVRFLEQHSCEDFIWYKLEKSYFNLSRDIYVCTVYFPPRNSPREQQLNVDHFEQLQNSMYKFSQKGEIIVCGDFNARMGNLEDFTDLSDSACSYPFPTVRNSRDQNVNAYGKSLAEFSNSNNLIVLNGRTRGDHLGQYTCFTYNGASVVDYTLVSQTIYPQVHHFTVSTPSNFSNHCFLSFALKTQKIKDINNLMDLDQHPEVFKWEKESETLLRESIASENVSRDLNEIFKSEEKINVDLAVDSFTNVIRQASKQVILVKKQKSSKRSSRQHQKWFNKDCNELRKELRSLGKLLSRYPDEPYIRHRFFSTKKAYKQLTKKLKRRFHTDLLEKIKLAADSNPKEFWNLVKTIRSDCSARGLHSVSPDAWYNYFKELNTPQNCFSDDSGIEAHIVKNYHVWARNRDEILDSPITLEEVQSTAKLLKNKKASAGDSLNNEIIKVSVESQGRYFVKLFNTVLTQGVFPKSWSKGYIVPLHKSGDKCDPGNYRGIAISSCLGKFFTLIINGRLTKFLKKYKILNRYQIGFRKGFRTTDHLLVLKTLIDSYKSSHKPLFTCFIDFKKAYDSVWREGLLYKLIKIGCSGRFITLLQSMYSDVRSSVKLDQGITPSFSSHVGVKQGCNLSPTLFNIFINDIPEIFSSSCDPVKLDNTSKLNCLLYADDLVILSDSATGLENCLQKLKMYADKWKLTVNMKKSKVLVFGPQQYRRQFTTGKWDYGGEPLECVDEYTYLGLKFHFSGNFKSALKSLYNKATRVYHCILNRLSNVENVSIQVLLKLFSSLVVPVLLYGCEIWGTCLLGRASSYEIFETKFFKVSNDFEKLQLKFFKRILGVHSKTTNLTIYGELGKAPLIVQISSLVAKYWCRIKSRIYENTLVGETAKISLSSTSNVPVRFINSLFAWCDLKTLQEIDIEGQQIHTLGKYIKKVLYKSYATFWKTQAQLNQNSGKLRTYCKIKTNFKLEKYLSEANVRRRQSMTRLRVSAHKLAIETGRYKNLPYELRICEKCEKNKVGDEYHTLMECDYVNDIRRVFFNDLFAINNSFKLLRPKDLFCIL
>RTEX-4_VC_gag#LINE/RTE-X 98-1546  [Volvox carteri]
MDYIQRARNNPEELANNGLMVQLIDQIAGLAGGLAATNQEIRTIKHEQAELKTQVKSLMKSGRGVYYDAFGLVHQNGLFYLDSMRIFTTGNVDESRIKNVLREADVNIKRIRLLGNDPNKDRKTWCAYFDITERPSFFRAAEVLRHQKVGIDDNLTQAGRIERKRMAPLRQDIMRQGAIPVWRNGAELYIKERPGGKAQPYGTRNDTDSDLGSAEYGADGGDSDGEGTAAAEQGADGSEYVGGNAGGGEGGASGSRGPGGGTSGVAAAATTAAAGKGCVRGPKMAAAGSAAPAVAGAANPTAAIAPATTSWARGVRAPLSPSVACRAGPAAIAPSVGANPTARAPPPPPPPEPIPPGHELALIANNKSKIPPEASLSAVKAKPPKQLRTEGTIGLMYTASPGTLERASYRPPAGRDPRVPGPDSRGVDAEGFRLVAGSTRNGQVGQGGSGSGGRDDRARDQLAVNRTNRFANLPNADEMDDT
>RTEX-4_VC_pol#LINE/RTE-X 1547-5431  [Volvox carteri]
GLASRGLRILLWNVHGLLEAGVFKLNQAGIRSFVTSHDIVVIAEAHLKDTIEEKDIALEGFRIFRVERSKEALRADYGGVALYVRESLTRGITVVRKDNQLPGCEVIWARVSLSTGSSLLMGACYLAPETSRVYPDGGGTVSQRTAAAEAVFTRIQQSLTELRLGDEDVLIAGDLNARLSGAQHERNRATPMDLPAYVNDIPDLEQSQAVCEVMGFEGLRDYQNYDGLGNRKCQDQVCNFFGAQLGALCRSEGLLVMNGRMRGDPEGRLTFPKGEAGGSMIDLFIATPRVLQQYATFLRVGNLIELDGWEPTDHRPLTLVLNVTVDDESRCRDGKGRKARVEFDIARYQDYAEYFEGGSPTMNALSQVAEDLQRGVCNTTQAVERIGGALYKVLVRAFDTHRPTGMTAGGNTVWWNRECQQTRQRMLESRAHLGPGRVSNKSGPEWEAFRHARTDYNRAKRHAKAAYEEDRMRDFVAKCRQDQRALWRALGGKLRERCAIDDIEVFREHFAGLLNAGVGETGPDGANRLLNFINFGQFLEGQEWRSSHSVLGRTAKAAEILDPPLTLEEVARAVDRLPNSKAPGLEVAPSECYRYARLPREEEGSASGNGGGRRRGEVNQLVPVLHVLLEHIRATGDFPRQFTTTVLTPIYKKGDPSMPSNYRGIAVGGALAKCYALVLLDRLVRTGETLSLRHRGQAGFRRGFGTTHHLFAKQYLTTRHSQPGQRPLIIVQIDFEKAFDKVPREIMWLRLQERGVEGSMLRSLMRAYDKVTMVIKTNGKAGGEFESKQGVKQGCPLSTELFGLYIETLADVIDMHDGINTGARPEDAPEVGNERVSILLYADDVSLLATTPGRMGELLNIVDMFCDDFGMRPNVSKCERLVFASDSDTRSAVQASCDELRLAGEAIPAKDSARYLGLVYGPERQFWACRQQLYDTARAAMFALSAKLDKLKLFAPDVRMRCFDTQVRAILLYGCQAWGPFMLAEVSDRLRKRSDANNLAEGPFEACLKDRAVQLQISFMRQIVGAARPTHRLLFAELSQLPLHYHVLKQVVRFWNHVRLQRGSVAYQVLRQEVAESLSNPEGAGWGTLLLRFLCFLGHDVWKEAPQGLHEVDERVEWLMNKPMPEGVILEFKDRLMSGWKHTRLDVQPDVYPSDGKQPGIHMAKYKHWMGLAAEQAGRKEVLPHITMFIPRSANRKLMQFRLCCWALAANRARKGRRYIPREERVCPCCGTDSHIEDEKHILLDCPVYDEIRSDMGFPRFEHMKDAMKWEPERLARMLERIWSHRNSIVPFGR
>RTEX-5_BF_orf1#LINE/RTE-X 150-2387  [Branchiostoma floridae]
MAGIRSTRASTRAKSSTKWWNVSASKIPADETIHTDYNDEAKTSPCNTKFVTTTDRVPVWVKVCKLRYNEEYGKQSGQKVEWRDGDQADVLIVTETEQKDGKVQESCVLSIHFWRNGTICIQGSAFLEWTDKIFPSLKKKVEETSNGNCQNGGPSQSDADGNKDHDTGSNTFTTPKGKTFLSSETVDTSSETIDHSDETPVKVPVGTPRKTNRFRKAVENFISPFRTPTSTESPLNSSKNVLDFENTPTPSDTVEKSTSHDHITRDIQKHYTDLVDLVNTLQVEVKALKDEQGTQKNEFEKKLKAVSGELKKQLEDEQKRHANERKSVNSRHNEEMATLTAKCESLQSLVEKQQQQIAKLQEVTDSIQLSQSISKMRTYAQTVALNPGAHQVSAKNCISKDNGTNNATDDKTMDPDTAHANHTTTQPSTEEADSDVELTQQVSSQEGTQVPTEESKQVRVYTDSIWKAVNVSRMFPNLSTHKDKTSTISDATKKLETIHDPGTSYAILHIGSNDLDNSKHDDSSVQGCLQKTEELISIAKASFPNATIVLSQVLPRGNDLQSDLNKNIKDYNQSVLQRYKDEEKLLYVRHKKLSTSRHLYRRDGIHLDEVTGTSLLVADVKRTIRSVENEYNPGYSRENWRQPPHSGQDRPQQNRGQDRTHRNRGQDRAQENRGQDRSQQNRGQDRPQQNRGQDRPQQNRSRDGSWRADTPGERSRPNWYRSQVNTPHEDIINLAYKLKELLNNF
>RTEX-5_BF_pol#LINE/RTE-X 2593-6300  [Branchiostoma floridae]
MAHDVALRLTSWNIQGSLSKKCVEVDFLDSICKYDVVCIQETWLKPEDNFHIDGYHYFRSDRKLRKQSRRNSGGVAILFKRNLAKGISKLHSNNSDIIWCKLDKNFFGFDRDVILGCLYLPPENSPIFATKKNTLFEDLTADIAKFNSGGHILLLGDLNSRTSNVQEKLFDGLDENACEIQLKPRFNTDTVNNRYGRELIDLCSAANMILVNGRTIGDLPGKNTCIKYNGTSTVDYCITSLHFFTSVQYFKVHDPTWMSDHCQISVSLKTNHSNFRHKTDEKTNSFPKRYIWEETSCEKFQEALRSSQTKNAIQQFISKPYSVSQTKHVVEDFNNIIKITADLSLKSIRVLKRKKKPVNKPWYDQQCRDLKSRMRALAAEIRKFPWRQDKRQNYVYKVKEYKKLIKKRKKQHNEGNMTFLSKLAKKEPKSFWKEINNLRNLENGSKVETGDEISISEWLNHFKTINANITVDTKDKEHADKIINSLEHETDNPLDFEITEEEIQNALSSLKSNKSSGTDSIINEMLKYGAPQLIQPFKKMFNIFLQSGHFPQQWSQSTLVPIYKSGEASNPGNYRGIAISSCVGKLFTFILNKRLQHFLESSNLLSPFQSGFRKDFRTSDNVFVLKTLIDQQTSKPGGKLYACFVDFRKAFDSVWRNGLFYKLLSLGIGGNFFRLIKSMYHNIEYCVKTPHGMSPYFQSFCGVRQGCNISPLLFNLYINDFPALLNPISCDSLFLKDTPVNSIFWADDLVLVSKSESGLKECLRALDQFCSLWKLSINKNKTKVMIFSKNGRTVNNKQSPFTSQGQTIEITNFYTYLGVDITPSGSFSRAIKQLRLKALRASFKLKSFLSSNSNPSISLAIDLFNSLVKPILLYCSELTGINAQCRDLIFKGIPECQNETTRTSIARVLSPILGSEVDILRVSRLGNISEASTIYTRPILVRFKKYSDKLNVIYQSDTLFRNQHITIEQPKISYEIPDLEYVLLNFCKILLHVPKSSVNAAVRGELGVFPLFVDSQTHLIKYWLRLHTLPNDRIVKKAYDTSVEEGHDWATHVQDILCRHGFQNVWLNPAVNAKHFGNIFKERLKDTFLSGWREQLKSTNKLKTYSKIKKHFGMEEYLKSIHNRSFRYSITKLRISAHCLEIEKGRHRNTPATQRLCPTCHENIEDEFHFVMKCPTYSKERETLFKNIRTKTHISLAGAESDIFHVLLSCSTHISVYVGQFLYNVFQMRDQINHT
>RTEX-5_VC_gag#LINE/RTE-X 14-1312  [Volvox carteri]
MDNSYTEYLARARGNPDGPITAGMLLALYGDFRKLGDQVLDLKNEQQLSRVEIIDLQGRVSKLETDPSGITMDARGLISSNKFFYWDSVVITTDKNKDEGSVRACLAELGLHALDIGLLTRTERPDRSTKSWLIDIRWKDRVKFFKAAPDLKRLGLRVDDSLTKEGRAERSRLRPMWQVIKAKQWIPMWRNGAELFYKKSPNGSAPVPYPSQYGDDDSDSGEGGEMDAENDDDVNMPFRGCAGGVGATGSGSAAAGGSMPPPPPPPPPPPPPKPMAPSPAAPPPAPPSYRKQLGVKNREAPVASLSAIKAKGGKHPRTEPVYGLTYSASPSRLDRSHNQAPAPRDPRPSSAAGRTMDIDGFITTSGRRSSKDQDRDGHGETGQQGLGVDEGTTRSREGRAGPSSRADHRPYDQAGKQTSANRFAGLPAEVDD
>RTEX-5_VC_pol#LINE/RTE-X 1313-5188  [Volvox carteri]
DSTSRGPRGLRVLLWNVHGLLEAGVFKLDRAGIKSFVTSHDLIIVTEAHLTDAVPDSDVSLEGFRLMRVQRSGDAVRADYGGVALYVRDTASHGVTIVRKNNSLAGCEVLWIRVNLLSGNSLLVGACYLAPETSRVYPAGGATNAQRAAAAEAAFARVQQDISELRQPGEDVMLAGDLNARISSAQHTKHRSSPADLPGYVSDVPDLDQLTALQEFMGLPGDTDPQGYTDVPGRRSEDLVCNFAGHQLGALCRSQGLLVLNGRVSGDLEGRLTFPKGEAGGSMIDLFVGSAGVLRHAYWMRVGELLAPDGWFPTDHRPVTLVLGLAVGGTGTSAKGCCQKKRAVFEISRYRDYAALFTDGSQVMHALNGVITDLSNGACNSTESVERISTLLRKVLIRVFAGRRPEGMQAGGGALWWNEECQSVRQHMLACRVRLGPGRVENKSGPLWEAFCKARNAMNRAKRRARAAYDAERMREFVVRCRHDQRALWRALGGQLKERCAIDDLHVFRDHFATLLNAGVGETGVEGAHRLLNYISFFGAPLGEGAWQACRTVMDRRARAASILDEPFTLEEVARAVGRLPNGKAHGLEAIPSECYRYARLPRVDEQGRQGTEVNCIVPVLHVLLEHIRATGDFPQQFTKTVVSPILKKGDPLVAGNYRGIAVGGALAKCYASVILNRLVRAGEILDLRHPCQAGFRRGFGTAHHLFVKQHLVRRHRIAGQPPLIIVQIDFEKAFDRVPREHMWLRLQERGISGPMLGALRKAYEKVSMVMKVNEKVGGEFESKQGVKQGCPLSTELFGLFIETLADLIDTHDLVEAGARKCDAPLVDSKRVSILLYADDVSLLATSVERMSELLHLVDLFCEAFGMRPNVSKCERLVFACDGTQQSELSGRCQQLRLSGQVVPAKDSARYLGLVYGPERPFSACRQQLCDTGRSAMFSLSAKLDKMKLFAPDVRMRCFATQVRAILLYGCQAWGPFALAEVVDRAGRRRDKANLAEGMFEACLKDSAVQLQILFMRQVVGTARPSHRLLYAELAELPLQYYMVKQILRFWNRLQKQVGSIAHAVLRQEITDALTNPEWEGWGISMLRLFSFLECNIWSGIPQEVVGVKERVDWLLSRPLPEGAIITALRERLMSGWDHTRLTVLPEEYPSDGKQPGVQMAKYKHWMGLPFSGAAAVMWPTHAKVFIPRLAHRKLMQFRLCCWALEANRARRGKYHVPRGQRFCHCCGPNSRIEDEKHVLLECPAYNDIRAEEGFDHQQSMLEAMQWEPARLARMLERMWAHRNSITPFGR
>RTEX-6_BF_orf1#LINE/RTE-X 74-850  [Branchiostoma floridae]
MSDKGTGTRTRDSARRDAEIEAASVRKEGDAAIMNELKALDRKLDGMQASFEKKLNSKVDSLQTSVEKLVSATKDELKAELERKTKEIGDNIDLEMGHMRARIDAMETKMAGISNSRAEFDPDESVIVSGLPFEEGEDVKEKIEELFHNGLQSDVPVVAAERMKSRGRGPGVVKVRLRSVQEKVAILRAKPKLKSDPSYEKVFLRSAKSHTDRLIELNFRTLLREIPGGKDYFITGSGRVQKRGARDLPADNNLPTQP
>RTEX-6_BF_pol#LINE/RTE-X 851-4369  [Branchiostoma floridae]
EADAEPVWEKINLVHWNVNGWTSLNCKLREITLQHLSPDIISINETHLKTDEVIELDDYTWYGHNRKTHRDAPKGSGGVGIFVKNNLRLQYKITIIDRDVDGMLGLHFEHTKSEYTFVVFSCYLSPEQSPWGRNATEYFSHLLCQMYALESVDAIYVCGDFNSRTGDRDDCITEVDGIPPRATIDTTFNNHGASLIEFLKDSKMCMLNGRVCQHNDNFTSVSTRGKAVVDYILTPHDCLDTCHDFNVITASDIVEECGYSCISLIGDRCRVPDHSVLSLTFYVNSQYVENVPSQSVKSRRKRRIVTENFLSSDISRRALLDLIDSLQVVQKTQQSIDLWYNSLCEVIYSDCDVNETGTNANTPRSRRLRSPGKPFWNAELDELWVQMRDAEREYVRCKGSKRCKAVLRDVFKCKQYAFDKNLRFYKRKYQRGQALELEGLKTNNPQRFWNEVNKLGPKRSTKIPMKVSDETGNLMEEVDKVLEKWEKDFSNLFAGNDGEGKFDDEFLQEICDLKLRLESEMNEVSYNPNEFLNAPITLDEIKAAVENAKTGKAMGADEISNEMLKAPDMLNTLYMLVQTCFESGLIPSVWYKSIIKPIPKSSKKDPTVPLNYRGISLMSTVYKLYSCVLNNRLTRYLECSNLLEDEQNGFRRARACIDHIYTVCTVIRARMEQGKSTFSCFIDFQKAFDWVNRDLLAYRLIQNGVDGKFYKAIMTLYKSPVACVQVNEYQTQWFPTPFGVKQGDVLSPTLFAMYVNDLAQKVKESGLGVRLDDMTLSLLLYADDIIIVAENENELQEMLNIVAEWCSKWRLMINQGKTQIMHFRKKGARRTSYEFRFGETKLDLVTSYKYLGLHLDEHMSFNSASSVLADSAGRALGGILGKVKALKELGYHAYTQLYESCVCPILDYAAGVWGFKKYDKCSVVQNRAIRCFLGVHKFAPVLAITGDMGWMPCEIRGKGAVISLWNRLINMSNDRLTKKVFMWDLQNHGPWSRDVQRILRSVEQEHIFLNNLRANTKQIKEKLFDMYQEDWASDIWLKPKLRTYRLFKDAYCTEHYVTMNLCKSQRSLCAQFRAGILPLYIETGRYQAIPEENRICTMCSLGEVESEAHFLFYCPFYDDLRESIFCKMFDKCPEVIWERDEFRMKWLFEEGVSEISNFIRKAWNKRRRQLYT
>RTEX-7_BF_pol#LINE/RTE-X 2-2521 fragment [Branchiostoma floridae]
PKEEIEAFVSEFSKILKDAGTRSLSIKIFNKKRKTRRQNKQWFDKSCTELKREVKNLASLLEKQPSNPDIRGRFFKRKKEYRKLTKKKKRDFHKYIMTQLSSLKDKDPGAFWKLVNKLKPGKAQENNISDEEWLKHFSSVDKLFNNTNDCPVSENDSLNSDNDLSPPHATPSVLDSPITLEELTTAISNLKNNKSSGNDMILNEMLKSGKTILKTPLLQLFNTCLQNGYFPDEWSHSHIVPIHKSGDPSIPDNYRGISIMSCLGKLFSSILNTRLVDYAENNRLFKPHQAGFRKNFRTTDNLFVVSTLVRKYISQNSHLFACFIDFSKAFDSVWRNGLIYKLNKLGIGGKFLQTIRDMYSKTTNCIKHSQGLTESYVTNCGVRQGCNLSPTLFNLFISDITAVFDNECEPPIMHTERIPCLLYADDLVIFSESKRGLQSSLNKLENYCNTWRLNVNLRKTKVIVFTKGGRLPRDCSFTYQKKPVELVTSYCYLGIIVSSAGTFKANHKHLYKKGLKALFGINQSLDKADAPISVRNKLFDACVKPIILYGFEIWGAFKTSNSCPIESVHLKFCKQSLRVPRSSCSLAARAELGRYPMQVEASLNSIKHFLRLRLNVPADSFQADAFSCQLELDKSGNKCWASGVRKSLEECGYAYLWHFPIPHRTNTFQIVNSIGQRLKDIYFQTFLKEIHNDNKGGAAKNKLRSYRLFKTTYNEEKYLSNENMRDRNAATRLRISCHKLHIETGRHTRTPLEQRLCKHCNLDRIEDERHFVVECRLYTVERNELYKVIQNQFPYFIHLSSVEKFIFLMQLDKPSIIKHICSFISTITEKRGEVEFIQQ
>RTEX-8_BF_pol#LINE/RTE-X 1-1818 fragment [Branchiostoma floridae]
LSQIVPIHKSGDPSLPDNYRGISIISCLCKLFSSILNNRLVSYAENNSLFKPHQAGFRKNFKTTDNLFVLSTLVSKYLSKNSRLFACFVDFSKAFDSVWRNGLLYKLNKLGIQGNFLRTIQDMYSKTTNRVKYSQGLTEPFVTNCGVRQGCNLSPTLFNLFLSDITSVFDNDICNPPTMYSKRVSCLLYADDLVLFSESKQGLQCSLNRLEEYCQTWHLNVNLRKTKIIVFTKGGRIPKDVYFMYKNNPVEIVTNYNCYLGIVVNSAGTFKANNKHLYSKGLKALFGINQSLDKADAPLSVRNKLFDTCVKPIILYGSEIWGSVKSPKSCPIETIHLKFCKQTLHVPRSTSGLAARAELGRFPIHLEASLNAIKHLIRLRQKVPADSFQSDALSCQIDLDKAGAKCWASGVRQSLEECGYGYVWHCPLQHNTNSSQIINSINQRLKDIYFQTFLREIHNDNKGGSAKNKLRSYRLFKSTYNVEQYLDIDNIRHRTAVTKLRVSCHKLHIETGRHNRTPLEQRICRYCNLDKLEDEHHFVVECSLYKKERAELYRLIESMFPHFIQLSNIDKFIFLMNLDKPLLIKHICSYIFNITKKREEAECTQ
>RTEX-9_BF_pol#LINE/RTE-X 1-1815 fragment [Branchiostoma floridae]
LSHIVPIHKSGDTSLPDNYRGISIISCLGKLFCSILNNRLSNYAEENSLFKPQQAGFRKNFRTTDNLFTLNTLVSKYISRNSRLYACFVDFSKAFDSVWREGLLLKLKKLGIGGKFLLTIKDMYSKTTNCIKTNSGLTDTFVTHCGVRQGCNLSPTLFNLFISDIASEFDHSCCNPPVLHCMNVPCLLYADDLVIFSESQRGLQSSLSRLEEYCKSWRLKVNLKKTKIVVFTKGGRLPRDCSFSFNNNVVEIVSSYCYLGIIVNSAGTFKANHKYLYNKGLRALFGVRQSLEKTDAPLSVKNKLFDSCVKPILLYGSEIWGSFKSSKSCPIESVHLKFCKQSLNVPKTASNLATRAELGRYPLHLEASLNAIKFFTRVCLNVPADSLQADALLCQLELDSLGSKCWASGVRKTLEECGYAFVWHSPHSIVSKVPSIISAIQQRLKDIYFQTFLCEIHNDNKGKCAKNKLRSYRLFKSTYNEEEYLKIPNERQRSIITKLRISCHKLRVESGRHNRTPLEQRVCQFCNLNKIEDESHFLLDCSLYSNDRSILFSHIIGKFPRFEYMSSVEKFIFLMSFDQTTLYKHISSYIFNITKKREEAEQMY
>RTEX-10_BF_orf1#LINE/RTE-X 219-2987  [Branchiostoma floridae]
MATAASPTPSRIYELLQLPESTTFSDVHESYATYIQDYTREREATKKLKPAERKAYMYRKSGAELREVSAAFLSLFETHLGTTSDCLRGPERYSVTHNISCITVNIPGESVSSWKSVCGAYYGVDGIDRGPNGVQYSTTFTDADTRIGTELGSLHITVYKNKLLVQGTSYLLWFLSHYNILQGMVLSDMTEKSADVTPVCTTSELQPPIEETICAVCNKREVEGDEFVGCSTCSSWTHFDCTGLDDATKSTLRNTDEKYYCINCHVPRVATCTIMLSDPPINTDSTTAGKTMTARKTNLDHSSNADVNTVRTKAVQSSTSETKEDQYSAALHEKIETLQRAVMELESSLASSKLQANVFETSVSGHLDVMRKEMESAKCTCSSKIDDTASRKLREENGKLRSRVQHLEQEFSSLKTTSLTLKSELDDMKLSQSLLKVKVGNVKDLIKSSEHVSHPKPAPRKEAVISENNPEVPVLEYTLTTSNRFDVLNQEESERTSESSVEEAVEVLAEVRSPKVHAATRTVNDETSSVSRQEGQGRKRVVLIGDSNAQKLKPNLLCPTADTSKPYWCPNLFSAPTVLEDISNEGITPQTVILHLGTNDVMAKTKDTVITEFEVTVSTAQSLFPQAEVVISAVPPRRNAKYRPNVNEDISAINLHLQKMCDTNKQLVYVNHPQLWKGTDDYNAHMYEPDGYHLSGDGVRTMAYNLKKHASKALGLPPLRNHGTSPRRQGHRNASNAYRGNNTPSSQSKGRKPQRNMFDEQGSRTTLAPDRPGLPQHQSSVGLAKPPAPPPRNSYYNQPRAPKGAPTSLPGQDRGPQWGNFSPGPASAPYNRQGNFAPPTLPDGPPAPAPPFFPNRPRQMPPAPWFQEWPSPAEAYGMPPVGFGQHRWIGSPPFPYFHMDRGWYGHPPDPSFGLSDRPHGSR
>RTEX-10_BF_pol#LINE/RTE-X 2990-6565  [Branchiostoma floridae]
MCIPHKSKQTKECRRNDFPSSSRNFGISFGFWNIHGLGSKLDDRDFISQIEGFDFFSLSETWHTGELSFPNFLYFSSHRTKSKKAKRNSGGLIFMYKKQYRYLVTRLNSKSEDILWVKIDRQLFNHDKDIYLASVYISPKGSTIHSNRTYDIFDILEEEIAYFSDLGDILVGGDFNARVGTLPDYIVNDAPLDMQILPTNYDFDHPLPRNNMDEGQPTVFGKNLIDLCITSKIRILNGRTPGDLLGKPTCFQPKGCSVVDYILASESIVLRKSPFFHVHSLSPLSDHCKLSLIIEGNPLAYQKKKTKLRTSPYRKFVWSTDSKEKFMETLNSTAFSSSMSSFIRKSYEPTPESLELALHDFVTPMQEAGQKSLSIRCTIAKRQRCPKQLNKKKWFNQTCASAKIKLQNICKLLSKNPRDPHIRGSYFIQKKQYIRLIRRTKKEYKNNILNQLNSFSGPGANPSAFWSLLKEYKSKDQTHSHEIISDESLHSHFSSLYGEDSTTNLPKLPNAFEIQIQRELLNLEDMLQNTHCNSLNEPINKDEIKQAISNLKNGKASGGDLIRNEMLKCSSHILLEPLSKLFNLFLSSGYFPQDWCTSHIVAIHKGGAKDDPGNYRGISVTSCLAKLFTSILNTRLTTFLDENNLISPNQAGFRKEFGTNDNLFVLDSLLSKHLSENKRIYSCFIDFKKAFDSVWREGLRFKLLNSGIGGNFYKLIKCMYTKPQTCVKTESGLTPPFVTKKGVRQGCNLSPTLFNLFINDLVHVLDNAECEPPSLHNLFVSCLLYADDVVILSESDKGLQCALNRLSAFCKKWKLQVNLKKTKVMIFNKSGRSFRNQTFVFDQDTLDIVPSYCYLGLTITSSGSFSLTKKQLSLKARKAMYSLKSLIRSSVSPKCLLKIFDSCIKPILLYGCEIWGTESINDNSPIEISHHRFCKNILGVSRNCSNLASRAELGRFPLDLDISVRVIRYWLRLLQMDPHRHLLQADALLYQHKSISNSRRRTLLQRVKEILDGSGHSYLFYSCNSLSDIRSICTMIRSRISDMFIQTSRHNLSIDTGKLRFYKTCKTAHTMEKYLELDNFDLRSAISKIRISAHPLEIERGRYKRLSVCERTCKQCTSNVVEDETHFMSNCSLYNQERKELFEEAIKFHPNFLTFTDKKKTVLLLTSQNPHIIEKVGSFVFHCLRKRSRTQ
>RTEX-11_BF_orf1#LINE/RTE-X 119-2443  [Branchiostoma floridae]
MCGVKLRSNNLENWLQHHKDGFDRDFESNKGTSVTWKSTQGATSLTVSTNTRKTGKGLLSVHFYQRKKGLMVQGQCTKWWIDNFYAEIVRLPLPDKRTRATSKVQDGVQLRVRHALDSFPIPDLETTPTPASRHNVDETPTLPKRTNPRSLEGLKTPDGSDSGEQMRLESKNDAKCKDATIKDGAQTDGQIKDNLPTNNETIMSPLSSAQKSGPSPKHEVAPKAVDKRDLERLASNIEKSLTISDTAFDDLQKQFVDLTDRQNSLRDDWITKEREREEVHLKSLKELSAQVEATQKSLEDHIKKVISKLQNDLLLAQKDLVSQKEAMVKERQETMNEMMVERNLWRERYHGLSTKVDALVASNTDLQQIIETQNAEIQALVERSKELEQMFNSCKCKSESIKSTMPPGMTKADRTHDNDVPLKNPEDNEMHALSDNEAIVKQQSVVNSVKTPAANNHTRGTTDSTEIRIFADSIFRDVDADRAFNGRSAKIHRCSTVQAAMNTMKTTQDSTTKTVIIHLGSNDLDNTKQHSDSVSETLNNTHNLLAATKTSFPNADISVSQVLQRGSNPSSSLNQNIKSYNQEMLKSSKKGTFTYIKHKKLTQDRSLYLGDQIHLNHRSGTKLLVADLKHSLKISPGQNVERSQPNLTHQPVHLTHHQWNHQPAWRGPLNPPPSPYVRGRQPAWRNPANPAQGPSAGGNQSAPGSFQNARPQHNQRGTLKGQHQQRDAHTVAVTSGSKQIVKADPARVGHRKYPGLELKHFGKSLRKALNFLLS
>RTEX-11_BF_pol#LINE/RTE-X 2564-6298  [Branchiostoma floridae]
MPSKFLTVMGKKSALILSTWNIQGGCAKKFCDVDFCSFFSNSDLICIQETWADNFVDFDFPGFSLFSSCRSRKKKAKRNSGGVATLFKSSFKKGIHKLDSSSPDTIWCKLDKHFFGLTNDIYLCNVYIPPETFPKSSEIDPFDTLSSDICKFSNLGDVVIVGDLNARTGSITETYFDTDSSDMVTADVMDVKNRNNRDVKVNNYGRCLLDLCSSADLTILNGRFAGDLKGDFTCHHYNGSSVVDYCITQRSMLSDIQYVHVSPLSPFSDHCHVSFSLSTKHAPLISEEKCPSKLNPIRFIWDENSNDLFSAALNSSETSSKLNDFCQETFHSAENAVSRFTEILLDASVRSLKIRRRKQVKKTQIKKNKAWFDQCCWSLRQQLKKLSLQIKKEPWAHEIRIKYFSTLKDYKKLIKQCKRRYKAEILTKLENMSEKNPKEFWSLLNFLDNEVNGKTQKNTTDPNITSTEWTDHFKGLNNLIKNKNFDTGFEKTIAERIKHLDKNPSNLLDYPFTMEEVLDGVKQLKSGKACGIDSISNDMLKQGSKQLCQSLITLFNTILSEGSFPSNWNTSILTPIFKSGDKSNVDNYRGIALSSCLSKLFTRLLNTRLQNFVEDNNLLADTQFGFRKKCRTSDNVFILKSLIEKYTQKKKGKLFVCFVDMKKAFDSVWRDGLFYKLLHYGIDGNFFNVLKSMYMNVNYAVRIENGLSDSFVSTCGVRQGCNLSPLLFNLFINDLPQCFDRDQCDAATLTSRSINCLSWADDLALISLSKQGLQQCINTLQTYCDNWKLTVNVSKTKVLIFSKGNTKKISKEFFIYDSEIEVTDSYTYLGIPFTSSGKFKTARKFLKTKAMRAIFKLKSLLSSENISIALGKDLFDKFVKPILMYGSELTCFDHTSKTLKLIVSKNIPISSPKNTLSFLLKKLQIDDNIPLSIRKSTCTDATHSYIINFERRPDKDMFLRHASGLDIEKDGFSTDNTRLPLDIPEFDILDTRFQKFLLGVHSKSSNDGVRGELGTFPIIIPARIQLIKYWHRLVNLPEDSLLRDAYNTVLTDNQDWINHVKDILCYHGFGHIWMKPEAYKTDYIANQLRLRLQDTYIQEWFSSIENNSKLSFLSKSKECYEQETYLYDINNFEIRKSITQLRISSHKLNIETGRYHNVAPDQRFCPFCPKQIENEFHFVMECPMYDMLRNKLFTFLCLNTTDFKILDTRSRFDYIFRSDSPHNAKIGKYIKDCFVIRKDSDTHV
>RTEX-12_BF_pol#LINE/RTE-X 251-3532  [Branchiostoma floridae]
MPIQKVALKFGSWNIQGGLKRKSQDEDFISYFDDFDFLAMQETWLKPGDHLRLESFSYCSSIRNVKKSSRCRRSSGGVLLMFRNKFSKGVTKLPTRHPDFLWCKLDKIFFGLEQDLFVGCIYLSPENSTSVDTRNNTLFDILQEDICKFSIQGSILVLGDLNARTSSLQETFIDDDCLNQEFLDIKDIRHRSNCDKGTNRYGTQLVETCSASNLVILNGRTPGDFNGKLTCHKYNGSSLVDYCIVNYDFMPKVQYLKISDISVFSDHCLLTCSISTNYSPYVQQMKPSTHPLPTKYIWDDDSKDKFTEALQAPLVLNDLQNFLDKSFDNVDNAANEFAAIITRVADKSLKKIVHNNRKKKKKKKASKPWFTSSCASLRRKVNQLATLLSKYPWKLDIRHSYFSNLKLYKKKIKTEKRHFKEKQWQNLSKLSKVDPKKFWREMKLQRQECSNREEVDNAISPKDWRNHFENLNNLAGSSQSDIKFHQYIAQERPDICQTTNNQMTTEEHTDSIISSLEKLTPNPLDLEITDGEILESLRNLKGNKACGSDSIINEMLKYGDTKLILPLKKLFNTVLHSGNFPHQWSRSILVPIHKGGTSSNPSNYRGIAISSCVGKLFTFILSRRFQHFLENDNLLSPFQSGFRKNFRTSDNIFVLKTLIDKQTSEPGGKLYACFVDFKKAFDSVWRNGLFYKILSSGIGGNFFKIIQSMYSNVEYCVKTPNGLSDFFQSTCGVRQGCNLSPLLFNLYINDLPATLMSPLCDPVVLKDTPISSLLWADDLVLLSKSETGLKECLKRLDDFCSLWKLSINRDKTKIMIFSKHGRTSKQQQSTFRTQGHTIDITKFYTYLGIDITPSGSFSRATKQLRLKALRASFKLKSLLASNHNPSISLALDLFHSLVKPILLYCAEVLGTNIQCRDLIFNGVQEYPAENIREGIYNILSPILGSNIQLLKVTRLGKKNDVTSPRPVLVRFKRYSDKLNILYQSELLSNQNILLTHPKFSYEVSDLEHVLLNYCKILLQVPRSSVNAAVRGELGTFPLYIEAQSQLIKYWLRLQNLPNDRIVKKAYDFAVEQNRTGPYMYKTYCADTVSKMFG
>RTEX-13_BF_pol#LINE/RTE-X 216-3791  [Branchiostoma floridae]
MNMCIPQRTQMPRSRLSLNPCKTRNFGISIGFWNIHGLGKKLEDSKFRNELNGFDFFSLMETWHTGELSFPDYLYFSSCRTKSKKAKRNSGGILFLFKKEYRNLVTKLENKSEDILWVRLDKQLFNSDRDIYLASVYISPQRSTIHANRTYDIFDILEEDISHYSNLGDILVGGDFNARVGTLNDYVTDDTPIIDSKILPKDYSFDHPLPRSNMDETQPTVFGKNLIDLCINSKVRILNGRTPGDLLGKPTCYQPKGCSVVDYVLASEDIVLRKSIFFHIEALSPLSDHCKLTLLLEGNPKPLQSQQKVNKLSTMPYRRFTWNSDSSEKFTEIINSVSFSSNIDRFIHKNYELKPESLETALQDLVTPLQEAGKKSLSLHSTKKTKRQPSSKQSNKKKWFNQTCASARRELQNLAKLLSRNPRDPHIRGSYFVKKKQYTRLIRKMKKEHKEKIFKQLNSLSDNNPSGFWSLLKEYKSNDKTDDHETIPAESLHSHFKKLYGIDPNTSKPRSSFETHIENELYKLEKNLENNPLDFPISKAEVKQALSNLKNGKASGSDLIRNEMLKCSSNIILEPLVKLFNLFLSAGYFPHEWCTSHIVALHKGGTKDDPNNYRGISVTSCLAKLFTSILNTRLTEFLDEYKLISPNQAGFRKHFGTRDNLFVMDTLISKYTSENKRLYSCFIDFRKAFDSVWREGLRFKLLNSGIGGNFYSLIKCMYEKPSTCVKTSSGLTPPFVTNKGVRQGCNLSPTLFNLFINDLVHELDNTECSPPALNNLLVSSLLYADDVVLFSETEKGLQSALDKLNIFCTKWKLEVNLKKTKIIIFNKSGRLFSKQNFLFGQERVDIVSSYCYLGITITSSGTFSLAKKQLSNKARKAMHSFKCLTRSSVSPDSLLRIFDSCVKPILLYGCEIWGTEKSNDTSPIEITHNQFCKNILGVSRNSSNLACRSELGRFPLDIDISVRLVKYWLCLTQMDYTKHPLQVNALLEQHNSVVNGRRRSLLQRVKEILDYSGYSYLWYSDNSLYDPVYVCNMIRNRITNMYIQTSLHNISIDTGKLRFYKTCKSVYAREKYLELVDFELRSAISKVRISAHPLEVERGRYKRLPVCERICKYCTSKAVGDETHFISKCSFNETERITLFREVTKTYPNFPTLTDKQKATFLLKSQNPQILENVGLFVSLCFQKRSQTQPV
>RTEX-14_BF_orf1#LINE/RTE-X 1-2415  [Branchiostoma floridae]
MGAESKTPKGKTPTTKPWNINLSKVPLDETLAFDYEDVEKSRLCGVKLRTSQLDKWIQLHKDNFDKNFEDHKGTTVTWKSTQGTTSLSVNFSSATKTGKSLLSVHFYHKKNGLMVQGQRTKWWVDLLYPELKNNVTMLDKCTRASAKDGVQRVRDAVNSFQTISTEQPLPKTPCPSNVTETPTMPKSTAPRTLEGLETPTGSSFTEQLQQDFVNGAQSAGDAITGDSRDPPVTSGVTSETNESSDTRNVTLTGTSNSPVEVYLERVISVEKSIKASDSAFNDLQKQYVDTIGKLNAFRDELIAKEKEREKAHMKSLNAISTQIEAAQKALESHIRKATAKLQTDLNNSRKDITLQKEKLMKEKSEAKQEISIERNLWKERLHSMSLKVDDLAASNADLQDIITKQDSEIQVLVDRYKDLEQMFATCHCGVTHSLHDNKAPSSQNNDRSTSHDNGFTPVNRKHNKQTIVPDDQTPAVCTNMPQSVNNHVRSENAGVEIRIFSDSLFRDVDPDRAFKANHTKIHRSSTISAAVDNISNIKDSTTKTVILHVGSNDLDNSKGHSDSVHKTLRNTDRLLEATKKSFPNARVAVSQVLQRGPNQRSTLNENIKSYNQEVLKLSRNSGFTYIKHRKLTQDRHLYLPDQIHLDPRSGTKLLVADVKRTLNASPPTPTAGPPQLPTPRPQRGYRSSDQHAHPRPQTAATKRDNAIPTRDWFKNSVNAIPLGSRKPVSPASLTSNRNPTTGSRPGGTQQVVTSPITTGSRSNGTLQVPTSPIATLQLRPTKQTVLQWKQIGKRFRKAWDILTS
>RTEX-14_BF_pol#LINE/RTE-X 2618-5762 via tfasty with RTEX-4_NV_pol, 1 frameshift. [Branchiostoma floridae]
MPKTSALVFSSWNIQGSCCKKFKDDEFLSYVENSDIICVQETWLDSYVDLDIPGYSFFTSSRIRSKGAKRNSGGVAVIFKSLYRRGISKLVSSTVDTVWCKFDKQFFGLENDLYLCNAYIPPESSSKSSNESPFEILSNDICKYSNLGDIVVLGDLNARTGQLIENHFDTFTFDNPITDGLCFTKNRQNRDIKVNNYGKTLIDLCSAADLTILNGRFAGDLKGDFTCYHYNGSSVVDYCIVRNSLLSDVQYVNVSPISEFSDHCHVSFSLSTXXXXXXXXXXXXXXXXXKTVTEYLNQLDDHTPNPLDFPFTPVEVLNGLKLLKTGKASGIDSISNEMLKYGAKHLCQPLVSLFNTILDKGTFPSNWNTSILTPIHKSGDKSNADNYRGIAISSCLSKLFTLILNNRLQNFAERNKLLDDTQFGFRKRCRTSDNVFILKSLIDKYTKKKGGKLFVCFVDMRKAFDSVWRDGLFYKLHKCGIGGNFFNIIKSMYNDVNYAVRLDNGLSNSFPSVCGVRQGCNLSPLLFDLFINDISECFDPTKCDPAVLTSKSLNCLSWADDLALISSSKQGLQHCIDCLENYCKKWKLYVNVSKTKVVVFGKGSSKNNKDQFHIYGKNIEITDSYTYLGIPFTFSGKFKTARKYLKTKAMRALFKLKALLLSNKDISINLGKNLFDKFVKPIFMYCSEITCFDRFSKSIRIIVSHTNNICEPSSKVFSTLLKKLNIQDNFPATIRKTTSSALNTTYVVCLERNTDKEILLRHANSHILRDNGFQIINLDSNQQIPEFDIIDMRFQKFLLGIHAKASNDGVRGELGTFPARIDAEMQLVKYWHRLVNLPEDALLREAYNTVSFGEHDWIVHVKNILNYQGFGHIWLNPRSYHIDTITTQLRQRLQDIYVQNWHSSIRNNSKLSSLSTLNKHYKQENYISTIKSLDVRRAITQLRIGCHKLNIETGRFQKIPIDQRVCPFCPELIEDEYHFMVVCPKYSDIRNSLYRRLSFCTQGFIQMDLKCKFRYIMTCDNPCMADIGKYIKEGFDIRNSPNDCKSLQ
>RTEX-15_BF_pol#LINE/RTE-X 2-1135  [Branchiostoma floridae]
LKKTKIIIFNRKGEILSNFKFYLLDKDLDVVSSYCYLGVVFTAGCNFSTAMKTLQKKALRAMFSIRTTLGENNPSVSLQCKLFDACIVPILLYGAEVWGNAGLNDNSPLEQAHLKFCKAIIGVRRNASNLATRAELGRFPLRIEAYSRLYSYYSRLTREVPTNSLQYQALLVQQDLHRRKVPCWLSNVSKILEESGYGYLLLNQDYNIPSAQSQVKQRLKDIFLQTFYSELNSNGKKENQGNKLRTYRKFKDTYEREQYLNIHNFSHRRAMAKLRISDHPLQIEVGRYNRTPPSDRICTLCNAKDIENEVHFVLECELYSDIRNSFINALNFDTRAKQLVKDELFVYIMKSSDNIVLQKLCEFIYTCFKKRKETCKL
>AF221986_Cpa#LINE/Rex-Babar Genomic sequence AF221986 14350-17121 via tfasty with CR1-5_SP, 2 frameshifts and 7 stopcodons. (a sea-anemone) [Calliactis parasitica]
TTNDKERSGKAFVPSILLSNVMSLAPKVDEVRHYAAYANLDLVCITETWLHGHIHDNIVAISGFNLIRQDRKEGVHGGVCMFIKDTIQYSLLDDLTDFSFEVLWVKIRPNRLPRGFSNVIVGTVYHPPSSDNSAILNYLMNCLSSIESRYPNCGIILLGDFNKLNVARLKSSFNLKQIVSFPTRGRNTLDLILTNLHDFYDVPEKRPPFGLSDHLSIEVKPKPRFKAKSRDLRPSNRLAVSSYLQEVDVPALISTGNSCSEKLSIFETIVNTGLDNILPVRSKAIHSNEPPWINPVLKDLIRQRQRALDNDNLPLFRLLRNRVNRERKSCRGKYYEEKVSHLKECKPSMWWKEVKKLXGISSXSRGPDDFXKSLRHIDGXSNKQDLANIINEXFILPMSDFSPLPTDFQLDWPDGALSTSFLVCXHSVYKKLSALNPTKAQGPDGIPAWLLKENXDILIEPVMEILNSSYREGRLPPSWKEADIVPVPKQKPVKDMRxIPPKRRAQMAFPLGYxRRTRILxWNLLWTSxTARIVRAAYHHPGKKLIxFPSRNRSQxKSQQTLTFLSHQYYPRSHALISMIHTWTKHTDGNGTTVRVVLFDYRKAFDLIDHTILASKLESLDLLHGIVXWIIDFLKCRKQRVKLEHDCKSEWKDIPAGVPQGTKLGPWLFVLMIDDIGVTNTDLWKYVDDTTIAEPVLKNETSNIQNAVSELNTKSHHNKFxLNEAKCKELRISFANCAPDLAPVIVNEKPIEVVSNVKLLGLNISDDLKWNIHISQIIRKVSTRLYFLKQLKRANVLTKELLTFYVTCIRPITEYACPVLNNGLPQYLSDDLERLQKRALRIIYPFATYPEALAVSNLTPLYDRRNTLTVNLFNEISSDVTHKLHNLLPKLNTCXVNLRSKRSFNVPICKTNRLKNSFIYSNSN
>Babar_pol#LINE/Rex-Babar gi|18157526|dbj|BAB83841.1| ReO_6 (upstream exon removed; no gag found upstream) [Oryzias latipes]
GFLHFIKVNVVQFNTVTFSREELLHIRESSAGLFNPVFTHTDSFLEILIGGAAALCGIRKRRQRGKRAGALVKRRQRGLRTALPAIHLGNVRSLANKVDELLLLLNKNSDFRCSSALCFTETWLSEQIPDSALHLPGFQLHRADRNTALSGKSKGGGTCFYINEGWCTDVTVLKKTCSPQLESFFINCRPFYSPREFSSFVLVGVYIPPQACVTEALQQLADQITEVERNHPDSLVITLGDFNRANLKAEIPKYKQHVTCPTRGLNILDHCYTTITDAYHSVSRAALGLSDHCLVYLIPTYRQKLKSAKPIVKTGKRWSDESKLQLQACFDCTDWSVFEAAASDLDELTDTVTSYISFCEDMCVETKTFCTFNNNKPWFTAKLRQLRQDKEEAYRSGDRDRYKQARNKLTKEIKAAKRSFTAKLTDQFSANDSSAVWKGLQTITNYRRPSPRPSDSYHLAEELNDFYSRFERTSPSPSATISITQDLPAIPTSPTPAPSSALTICERDVRQQFQKQKIRKAPGPDGVSPSCLKVCADQLAPIFTRIFNSSLEMCVVPACLKLSTIIPVPKKSPVTGLNDYRPVALTSVVMKSFERLVLNHLKVITEPLLDPLQFAYRANRSGDDAVNMALHYILHHLDSADTYARVLFVDYSSAFNTIVPELLHQKLSQLAVPLPTCQWIISFLTDRRQQVKLGRFTSSTRILNTGAPQGCVLSPLLFSLYTNDCRSGAPSVKLFKFADDTTVIGLIRDGDETAYRGEVERLVLWSSQNHLELNPLKTVEMTVDFRRNPSTPPPLTILNSTVPSTDSHRFLGSTISRDLKWTAHIDSLRKKAQQRLYFLRQLKKFNLPQGLLTIFYTAIIQSVLTTSITVWFGSATRHDRNRLQRIIRSAERIIGTSLLPIQDLYRSRARKRAGRIVKDPSHPGHCLFSLLPSGRRFRTLRTKTTRHKDSFFPRAVTLMNT
>CR1-2_FR_pol#LINE/Rex-Babar 2-2821 Fragment, via tfasty with Rex1_FurC_pol, 2 frameshifts. [Takifugu rubripes]
RRRKRGCRAGVERRARRRRYRPVLPSIIMGNVRSLPNKMDELAALTRHQREYRECSLLLFTETWLTALTPDTAAQLDGFTLLRADRSRESGKRKGGGLAVFVNDRWCNSDHIKEQHCCKDIELLAVSMRPHYLPREFTHALAVVVYIPPSANADAACDVLLSAVSRLQTQHPDALLLISGDFNHASPSSSLPKFTQYVTCHTRDNKTLDLFYANTKEAYHSLPLPPLGRADHNLVHLQPAYKPLVQRQPAVTRTVKKWSEEAEEALKDCFNTTLWDVFSDAHGEDIDDLTNCVTDYINFCVENTVPTRTVRSFSNSKPWITPDIKALLKEKKRAFVSGDKEELKTVQRELRRKIRQEKDNYRRKMENQLQQNNICGVWKGLKTISGFKEQKSQPVGDRGWANDLNLFFNRFDQVPTPPPAQSPLLLPPPLSVPPIHCSSCPPSPSLMNFSSHIPDTSHSGPCPSPPPTPPCSSLSLTPHQVRKALKKNRARKATGPDGISSRLLKSCADQLCGIFSHMFNLSLKLGRVPQLWKTSCIVPVPKTPHPKELNSYRPVALTSHLMKTLERLILAHLRPLVSSFMDPLQFAYQPSIGVDDAVIYLLHTSLTHLEKAGSTVRIMFFDFSSAFNTIQPRLLGDKLQVAGVDHHLTTWILDYLTQRPQFVRVKGSESDRLLCSTGVPQGTVLAPFLFTLYTADFSYSTSSCHLQKFSDDSAAVGLITDGDDTEYRELIQDFVDWSLRNNLQINAGKTKELVVDFRRRNNPPPAPVNILGTDVDVVESYKYLGVHLNNNLDWTHNTDALVKKGNSRLFLLRRLRSFGVQGPLLRTFYDSVVGSAIFYGIVCWSSSITDRDRKRMDRLVRRASSVLGCPLDSVEVVGNGRMMAKLSSMLNNTSHPLQDTLTALGSSFSERLLHPRCVKERYRRSFLPAAVRLHNKHNAR
>CR1-3_FR_pol#LINE/Rex-Babar 1-2185 Fragment, via tfasty with Rex1_FurC_pol, 1 frameshift. [Takifugu rubripes]
CKHQGCIHPLPPLGRSDHNLVHLSPAPMVNKQPPTKRYVRSWSEETSMALRDCFDTTDWDVLCEPHGEDIDGLTTCVTDYINFCVENTVPTRKVRCFPNNKPWVTPDLKALLNEKKRVFRSGDKEELRRVQKELRRGIRRGKDSYRRKLEERLKGSNAREVWRGLKTISGHTKDSGRGPESGGLDRANELNSFFNRFDCAAPPSPTHQSPDLTVLSHHHPPSPPVTPPAPAALSSHHATSLHPLPDRPSQSNPRPHPPGVTPRLSITADQVRKELRRTKTRKATGPDGINSRLLKDCADQLCGVLLHIFNLSLSLERVPLLWKTSCVVPVPKTAHAGEPNHFRPVALTSHLMKTMERIVLTHLRQLVDSKMDPLQFAYRPGIGVDDAVIYLLHRSLSHLESTGSTVRVMFFDFSSAFNTIQPSLLRGKMEGAGVDCHLAAWTTDYLTNRLQYVRLRDCESDVVVCSTGAPQGTVLSPFLFTLYTSDFSHNSDSCHLQKFSDDTAIVGRVSEGNELEYREVVTNFVAWCELNHLRINASKTKEVVIDFSRKASHTAPVNIQGLDIEIAEEYKYLGVHLNNKLDWTHNTDALYKKGQSRLHLLRRLRSFGVCRTLLRTFYDSVVASVIFYAVVCWSCGSSERDRKRLNKLVRRAGSVLDCSLDSIEEVGERRMLAKLTSIMDTPSHPLHETVGALSSSFSSRLLHPRCKRERYRRSFIPTAVRLYNMHNS
>CR1-5_SP_pol#LINE/Rex-Babar 1-3144 [Strongylocentrotus purpuratus]
PSQRVNIELCCEITVSADKLAPNMLDNFGIIVVLSVIASLPHFIAESRPALLAGVTMEFQLVQNSIDTERYSDQYRYTKDELLSLRNTSHSRLPDNVFARIKELGIDKRRGCRAGSHKWRKIAVVEGRRRRTPKPPGVRAPQLIPIKTITTVSTDRQSQGNLPTIYMCNPRSLNNKLDEFSVVVHELCCDVCVVTETWFRADQPESDFAVDDYLVFAKSRDSRRGGGVAIYAKPESMPKTVNFLPPHPHHEVIWLQLRPKRLPRDISCLYVAAVYSPPDNDCVNDLIQYLVNAIDDIKTRHGDAGVVILGDFNRADTSELTSTCNLRQVVRKATRGTAILDLILTDIHQWYSEPEILSPLGLGGDHNAVLWKPKLNKTNSKNKAVRKFVRPMKDSAIREFGQWISQHTWDDVMASSSAQEKCDKLYASLQNAMDEYLPMKSVKMHPRDKPWVTPYLKSLIGQRQKAFSNDRTEEWKRLRNKVQNKKTELKKNFYKDRVLKLKRENPSSWYKHLKIMTSSKTASNIIIPESPELDDLAIADCVNDHFANVSQDIPELDLQSLPAYLPTPKPQLTVQPHEVYKELNRIKPGKSSGPDGIPARIVKEFAVELASPLCEVLNSSYHSGSVPSQWKGAIIAPIPKEKAASSIDKQRPISLTDHFAKIAEVFIYRKLLADVRHQLDPKQFGARAGRSTTHCLVEIYNFLCKRAELPSNVTSIVSTDFSRAFDRVDHTILIRKLITLEVHPWVIVWICSFLTDRQNQVRYHGELSSTRSMTAGVPQGTRLGPLLFLVLIDDALRESEVERWKYVDDMSLASAEPSNQHGQFMQNVLVNLEEWCNQNNVRLNPKKCNIMRVTFSKTPLPDRDFSLCNDVLQEVSAVKLLGVILQRDLKWNDHVSVTISRASSRLYMLRRWKEFHLPAADLVTVYVGFVRPLLEYACPVWHSSLTCAQSAALERIQKRALRLIFPGTSYNTSLDLARIVDLETRRKTLCINFATKASRSEVGSDWFTENNPTRNLRKNKRYREPRCRTNRYQNSPIPFMTKLLNFN
>CR1-9_NV_pol#LINE/Rex-Babar 95-3220 [Nematostella vectensis]
MWPSNLCLAQTLRFMYYFTKFMTFRWPSNRQFVGVLDGELVGSHAESTNSSSPGRLVYSSAYLKSISKTQKKQVLPKDLWQELNSLGIRKPFRSKRKRRPLNSGHPVLDSTGILPLSETSAAPPSQTGVGIDYSRIAPAKPSIPNIMICNLRSLAPKVDELECVMEHNGVDIACITETWLSDEISDSQVSLKDFTLFRKDRPSHAGGIATYIKSVIPCVRLSEAELSGAVSETMWIHVKPFRLPRSVSTILIGVIYHPPHASAEDNNMLYSHVQETVDRFLRSHPEALVCVTGDFNPTSTKISPVPFKRSAGLTQTVNVLTRDTGTLDWCLTNNPKCLQVPKQLPKIGRSDHYGVLIQQAPPSQKGVKCTMTKRDTRDSALRGFGSWITSFSWDEVYCLDNCKEKFDLFYQILSDAINQFLPLKTFRVHSTDKPWISTKIKSLVARRQHALVRYGKDSPAFKMWRNKVQKAISSAKMSFYNSKVKNLKESSVGKWWKEIKNLSGVSDDSGQWYLQLVDGLIIDSVDSLCDKINDFFVSLTSGFTPLAQSDVKEIIVDSVPPDLLATPWEAELALRGIKVKKAPGPDGLPNIILKEFAHELGPVVSDIYNASLVEGSLPSLLKSAIVKPIPKQKPAKSVEKDIRPVSLTSQVAKIMESFTLSRITPSLTSKLDPKQFALAGRSTSQALVYLLHLALEALDNGNCSLRFFFADFKKGFDIIDHRILLSKLSSYGLHPSLVRWVAAFLQGRSQSVQIANSSSACKSPNGGIPQGTKLSPILFAVMVDDLVRAWGPRVKYVDDLSILEIIPRNAPSVMRHMVNNVNNFAQNNNMLLNPSKCKEMRVDFLQYNSSQCQPIAVGGSVIESVTSFKLLGVYISSDLSWSSHCDYVIKKSNRRLYALRKLKSCGVSERDLVSVYCSLIRSILEYACVVFSNLPQYLCAALERIQKRSLGIIFGSGLSYEDALERACLSSLEARRHNVCRKFISNIKQGSVLYPLVSSRLISSNSPYSLRSKRSHSVVPGRTDRFSKFVSAQYAGDLMLL
>CR1-10_NV_pol#LINE/Rex-Babar 1-3111 [Nematostella vectensis]
MYEMWSVLLLTLSQFAVWPQLLFSSLCWRNFPQRPSELLSRHPGQGTNPRKCYSSSTLKAFRKSSTSSRLSDDLWMELKDLGILKPYRSRRKRRKQRTRPCVNESDANEAGTVSVNPPRIKASLPVTLLANEAGTVSVNPPRIKASLPVTLLANVRSLHKKVDELHSIAESTKPGIICLTETWLDSSVPESAIHLGNYVCFRRDRPIGQCGGICAYIDSHLPCKRLLEFENPDIEALWVSIRPFRLPRSVSNILVGIVYHPPHCGSEENSRLIEHISINTESFLTKHPDGMILVTGDFNPPSTGIKASVIKQKSGLSQIVTVLTRDSGMLDWVLTNKPKLFQSPIQLPKIGKSDHYAVLIKPIGALGTIKSSTETISRRDMRPSCMDAFGRWITGYNWSYVLDAPTADAKCRLLYSVLQNAVDIYFPAKSIKVCLTDKPWVSSRLKGLVTKRQRALRIHGKDSPIFKRIRNSVKELVKNCKHNYYSAKVASLKDTNISRWWCEVKAIGGLSSTSEWWHQLLSEDTPTIESLCDQFNNLLYSLTSHFAPLDISSLADENLYVPPGFLVTDEKAYKALRSIKSNKSPGPDQVPSRVWKEFAFELAPIVSDLYNSSLREGRVPEILKTSLVIPTPKVTPPKTVEDDLRPITLTSPLAKILEGFTLEHLMNQVAENLDIKQFSMPGRSTTHALVYMLHIILAALDKGNCFIRVFFADFSKGFDLVDHNALVNEMKLLNVHNVIIRWICCFLSNRPQRVRVGNALSSVVVSNGGIPQGTKSAPLLFAILVNRMLARWPNRVKYVDDTTVFEIVPRCSPSYIQFIVNDIKEYASSRGMRLNPKKCKELQINFLKYQPSVPQRLILGSAVVEKVEHYKLLGVHISADLSWNVHVDHIVKKASKRLYALRVLRKAGVQQSDMVLIYCSLIRSVLEYAAPVWASLPEYLAELIETVQRKAIRIIYPCLSYESGLKVAKMDSLTVRRAELCRRFMAKARCTEPIKYIIQSGTEVAHGYSLRGGCSRLDKSVGVTERYNNFITIRFQ
>CR1-11_NV_pol#LINE/Rex-Babar 12-3137 [Nematostella vectensis]
MSSQGMYMFHPGLVVYFFARLINFWLSRGRSFVNVFSGSHLGISHASDVLAPSKIVYSSSILKSIGKHQPKQRLPAELWDNLDDLGIRKPFRSRKAKKSSTNHHGHPVVFPTGYPPGSSVSVSPSLLPSPTTRLHYLRPASIPSLLLCNVRSVAPKIGELDCVAKLNRADVLSVTETWLSDDIPDSAVSLQDYILFRKDRPNRRGGGLDFYIRSDIKCKRLYDVELGNDSIPETLWVIARPTRLPRSVSCVLFGTIYHPPDANSDDNEALYQHIQETIDQCLSQHPECLISISGDFNPSSTNFSASKLKRLCGLTQTVKVLTRDTGTLDWVLTNRPHLLPSPAQLPKIGTSDHYAVLVEQILENSPKLRKQSSTRRDTRPSRLREFGQWITTHDWSNLFCAHTCQAKFDVFYNTITDALDRFCPSRVVRSHPSDKPWMNNKIKSWIAKRQKMLAKFGSDSVIFKFWRGRVVSAIRTCKRSFYQSKVKKLKDTNTRRWWREVKNLTGQSMSQAEWYSQLIDDSSIASVDNLCKKINEFFVQLTSDFRPLLPHDVTAIVVPDVPDHFLVSSYEAYKSLRGILTNKAPGPDGIPALILKMFAFELSPIVAELYNTSLKEGHLPGLLKSANVRPLPKLSPPKSIETDIRPISLTCHLAKAMEGFTLSRSLPGIVQHLDTKQFAVAGKSCQHAIVYLLHLTLEALDRGGVWVRWFFADFKKGFDLIDHHILLNKLCSLDIHPCLLRWIASFLEGRTQVVSIASSTSPPLNLNGGIPQGTRLGPILFAVMVNDLIRCWLPRAKFVDDLTAIEIIPRNAPSTLPFIVSQVQSFATSNNMCLNPTKCKVMAVDFLHYNSFQCPPIATGGTILEEVKSFKFLGVFITHDLTWEVHCDSIVKKANRRLYAIRQLKRCGVSTDNIIVVYRSLVRSTLEYASVVFADLPRYLSDSLERVQKRALAIIYPGLDYKEALTRANLATLEDRRTDACCRFISCLTPQNPVYRLVQDRIEATTHSYQLRTRTGNHIKPFATNRFGNFVTNKHALALAI
>CR1-12_NV#LINE/Rex-Babar 2-2629 [Nematostella vectensis]
ELQTVVNLNRPQIVCITESWLHPDIPDAAVNLPGFSCFRRDRTHTSGGGVCVYVDSNISCTRLSDYESQDIESIWIDARPRRLPRKISRILLGSVYHSTSCGEVENCXLLEHLQSNTESFLRNHPEGLVLICGDFNPTSTRFSXVATKRATGLSQIVKVLTRDTGILXWCLTNMPNSFAPVCQLPKIGRSDHYTLLIAPILRSLKPRAKXTIWKRDLRPSKIRDFGCWITQQRWTEVFDKQLVSEKFQAFSDVXYMAVDKYLPLRKISICSSDKPWVSNKLKYLVSKRQKALHQFGNDSPQFKMYRNSVQEECKKSKASYYKTKVAKLKNTNVKRWWKEVKGLSGDSGSSRDWSQQMLCDDIPTTSDLATRFNNFLGSLTAHFEPLPPQAPGSFYQVPDDLLIDNRRAYQALRQVKTNKSSGPDPIPARIWNTFAIELAPVVCDLYNASLIQGYVPAPLKQSEISPIPKCPRPKVVEDDLRPIALTSQLAKVLEGFTLQPLFHQVLHQLDWLQFAVAGKSTTEALVYVMHIIFEALDKGDCWVRLFFSDFSKGFDLVDHNVLIAEMSHLGVHECIIRWVSSFVSNRSQYVKIRDSRSHVISPKGGIPQGTRLAPLLFAILVNRLARDWQYRIKYVDDATVFEIVPRNSPSYLPFVANDINSYALARNMRLNAKKCKEMAMCFLTYNSTELAPMLINGCVIERVDCYKLLGVHITSDFSWNTHCDAIVKKATKRLYAIRALKKSGLSSNDLIQVYCSTMRPVLEYASPVWSALPEYLVELVESVQKKVLRIVFPNLSYHEALSHAKLETLCQRRETACIALVAKAKRGGPLKRLIPIPVATHHGYGLRSGTASVVPICGRTNRLNNFCTYRYQQVM
>CR1-13_NV_pol#LINE/Rex-Babar 1-3096 [Nematostella vectensis]
RSAASARVATRFCALCRFVYLLLIFPAFHVQYTYSVLPGLAMASINIYTEFLAFFRPKSVASPQHQMASSCTTRISYSASSLKTMRKCSPKLRLPDDLWAKLKTVGIRKPPRSKRKPKKKETANHTSVVDSPPSDRPRNTRMIPVTLIANFRSLLPKMDELFSITEVIRPGIICLTETWLNNSIPDSAIALHNYVCLRKDRAVGQCGGVCVYIDSHIPCKRLLDFERPDVESLWISLRPFRLPRHVTEILIGVIYHPPHLGSEENRILVDHFQENTDAFLRRHPEGLISICGDFNPSSTGISPQVVKRCTGLSQIVEVLTRDSGTLDWTLTNKPALFLPPSQPPKIGQSDHYAVLVKPNNPLMAQKTEKKYTTRRDLRESSLCSLGRWLTTFNWDCVLNLSSVNEKVHSFYEIFCKAIETFLPARRVRVCSSDKPWVSSRMKSLVSRRQSAFKALGKDSAIFKMFRNKVQKEARNCKRSYFNSKVSSLKDTNVSKWWAEVKALSGLTDRSEWWHQLIDSTTPTTDALCEKFNTFLENVTSHFAPLDLDSCATTLPVPPDFLVSDHQAYKALCSMKAKKSSGPDPIPSRLWKEFAYELAPVVANIYNSSLKEGHVPKRLKSSYITPTPKVSPPKVIEEDLRPITLTSPLAKILEGFTLDLLTSQVIKKLDIKQFSVSGKSTTHALVYMLHVILEALDRGNNYVRIFFADFSKGFDLVDHHSLLNEMRSLDVHPVITRWVFSFLTDRSQRVRIGSSLSLPVSPNGGIPQGTKLAPLLFAILVNKLVAQWPARIKYVDDTTVFEVIPRCSPSYLQVVVNDISNFASSRGMRLNPKKCRELSVSFLQYQPSLPGELYISGLPIKRVDSYKILGVHLSSDLTWNVHVEYVIKKASKRLYALRSLKKSGVQSNDLVRIYCALIRSVLEYAAPVWAGLPVFLSDLLEAVQRRAMRIIFTHTDYCTALTNAGLMSLSARRDSLCESFVTKAKISPPLNYIIPKATEVNHSYSLRSGYMRTDRFQGNTDRFNNFVSVRFQ
>CR1-15_DR_pol#LINE/Rex-Babar 1-1453 Fragment; via tfasty with REX1-1_DR_pol, 1 frameshift. [Danio rerio]
VNNLDIVGTKTQSQTMIIQEREVIAVLHNVKSHKASGPDGLKGKVLKECAEQLGVCTRLFQVFLDNGFVPLAWKNSIVIPVPKIPHVKSLNDFRPITLTSVLCKCMERIVCKELSSQVEKTMDPLQFAYRANRSTVDASLTLLNKVQHHLDRPNTYVRILFMDFSAAFNTVQPNLLLERLYNLGVSNWLIIWIREFLKNRPQRVCVNHAMSDCSVLNIGVPQGCVLSPLLFSIYINELQCNIDDNLTLIKYADDLALVSCQEEMNSSLYFRYIDSIIDWFGKSSLHLNIGKTKELCLGSQTRRVDTGLFKPVTINGQIVEQVSNFKYLGTIIDNKLNFNSNVEAVYKKASQRLYLLRKLRSFNVSTQTLNLAYRSLIESVLTYNIVSWFGNTTLKQKKKLAQIINQANKITGHKQHSLQILFDSFMEKRAVVIFKDNTHPLHSAFELLPSGRRFRIPKARRNAYKKSFIPMAVVVLNRINVCSE
>CR1-18_NV_pol#LINE/Rex-Babar 91-3165 [Nematostella vectensis]
MINNPSNVVPVYFCLPILAFWSFLPCYFHLKAVDRGSHVATLTSEPVASTGWSYSNQELKTIRKSQPKQRLEPKLWQKLGDLGIRKPFRSRRKPRQSRHVCTGLPVVTTVDSTGHPQLSSGCSTNSSSSQTARFPVIPDTIIANMQSLLPKLDELYAAIMQFPAGIICLTETWLNESHPDPLIHLPGYLCFRNDRTTSRGGGVCTYINSQYPCRRLPEFEDLSIESLWISVRPYRLPRSVSTLLIGVIYHPPSNGEMNRQLVDHIDKNCESFLSKHPDGLVVVTGDFNPSSTGIKAQYVTHKTGLTQIINVLTRDTGILDWCLTNKPKYFQQPLQLSKMGSCDHYPILIKPNLSVTNPKAHKSSVWRRNLRRSNLDAFGRWITQFCWNTILSLQTAREKFERFYTVITDAVNTYLPLQRVQVCATNKPWIGTSLCSLIARRQKALTTLGKDSRLYKELRNQVQRECKVCRERYYPNKVAALKESNISRWWQEVKCLSGSVVSNEWWHQLMDDSTPSVQILAERFNEFLLGLTSNFAPISQQVTCSGPVPPELLITPGKAFKALSRIKVKKSSGPDPVPSVIWKEFAPELSDVVCNLYNSSLMEGFVPQELKESIVHPVPKCSPPKTLSEDLRPITLTSQLAKVMEGFALDSLFACVKDKLDPKQFSVSGKSTVLALVYFLHCILESLERGENYVRIFFADFSKGFDLVDHNVLMSELDLLGVNEYLQNWIAAFLTARPQRVKISGHTSSPVFPNGGIPQGTKLAPLLFAILVNRLASTWPYRIKYVDDTTIFEVIPRCSPSYLPFIANDICNFATERGMRLNPKKCRELVINFLQYQPSPVNALQLMGSVIKRVESYKILGVHISSDLSWNKHVDYVVKKANKRLYALRLLKKSGVPVQDLIAIYCVLIRSVVEYAGPVWANITGFLVDIVEGIQKRALRIVLPHLRYKEALETSGLQSLADRRRELCISLMTSAKELEPLRSVITGGVINNVHGYSLRSGSMNTYKHISVTKRFGDFVTYRFL
>CR1-19_DR_pol#LINE/Rex-Babar Fragment; 168-1522 via tfasty with Babar_pol, 3 frameshifts. [Danio rerio]
ADMSKKSAGPDGLSGFLLKVCAEELSPVWCSLFQKSINLKVVPAIWKRSLIIPVPKIASPVDNNDFRPIALTSVVMKCFKKYMVSVLRENISTKLDPLKFAYSKGVGTCDAINSLLHFVLNHLEGPDAYARVLFFDFSSAFNTVQPHVLIRKLKKLGVNSTIIEWYHSFLTNRTQAVKVNNSLSQVKYSSSGVPQGCVSSSLLFTLYTNECSSRHSQNLIFKYSDDTVILSLLNKQDPVSVYFSEIDSFVEWCDENFLKVNTKKKKKMEIIFDPKCVVEHLPVFVHNQEITQVQSYKYLGIYIDRSLTWDTHVNWICEKLHQRLYFLRRLWFYGVDKNIMYLFYQAVFESVIRYGLSTWYGNLSVNLKSKIFNIIRTATRLIGSETFTSIQTLYEQCTLNEAKRIVNNPSHVLFPFYDLLPSGRRYRTFRWKRNRFKNSFIPVSIRLLNTEQ
>CR1-20_DR_pol#LINE/Rex-Babar 12-3079 via tfasty with Rex1_FurC_pol, 4 frameshifts and 2 stopcodons [Danio rerio]
MMAPYLWQPVAAALDVFNFVYLLYFLNIFLQWLRTLYLHTFQFESIRKHWIIFIFILAFLIGKSDAVNSPANADAVIYSREQLLALRHTSTFSVPTMEVPTELKRRRRGCRAGVKRRLKKKRYKPSLPVIIMGNVRSLGNKTEELTALVRTQREYRECSFMCFTETWLNDKTPDSVVALDRFHLVRADRCAKQTGKNKGGGLALFVNERWCRPAHITTKEVVCNKDIELLAVGMRPYYLPREFSYVIAITVYIPPSANASNACEHINTVTASIQLKYPHSLIVISGDFNHVSLQSSLHTFTQYVDCGTRDCKTLDMLYANVKDAYASTPLPPLGRSDHNLIYIRSVYVPAVRKQPPTIRTVQVWSDSVYEALMDCFDSTDWEVLCKSHDEDIDSLTDCITDYINFCVENTVPTKKVKCYSNNKPWVTPELKALLNEKKRAFLAGDREEIKRVQKELKIKIKEGKDNYKSKMEHKLQQNNVRDVWSDLNRMSGSGNSLKRCTASVGKNWVDEINIFFNRFDAAPVCLENSHPSTHQSSFLDSPSVLTSNFSDLxVCTKLEVTIEQVRNGLRRIKKKKSAGPDGISAGVLKACADQICWVVHYIFNLSLRLERVPILWKTSCVVPVPKKPNPTEFSHYRPIALTAQLMKVFERLVLNYIKKLLIASEDRLQFAYKTGVGVDDAIIYLLHKSLSHLETSGNTVRITFFDFSSAFNTIQPALLKVKLENAGLQKGMVSWLTDYITNRPQYVRMHNCVSQVIMSSTGVPQGTVLAPYLFTFYTSDFQYSSKNCHLQKFSDDSAIVGYIRNHDESEYRLLLKSFADWCDMNCLNLNTSKTKEIIVDFSRHPSQAVPVIIQESEIEIVSSYRYLGVYLNNKLDWSENTIQVYKKGQSRIHLLRRLRSFGVCQTLLKTFYDSVVSSVILYAVTCWGGGLLEKEKNKLNKLIKRAGSVVGGALPTIEEIAQDRMLDKFVSIMNHDSHPLYDTVQACASSFSTRLIQPRCYRERYRKSFLPTVIRLYNQSHTRx
>CR1-21_DR_pol#LINE/Rex-Babar 2-2530 [Danio rerio]
GTFGSRLYVFWPLLRVNRMPGFCLSTMACFASQTEEHGNLRAVYVNKRYCTAVTVRERICTPDVELLSVSLRPFYLPREFPQLFVTIVYIHPKANAMSACGTIFNVVQRLQMISPDAPNFVLGDFNHVSLNKTLTTFYQYVSCPTRRDRCLDLCYGSVKDAYKSLPLPPLGSADHNCVHLIPTYKTVLKRQKTQTMDVMDWSDESALCLQECYDCTDWEMFKQSCGDNFDMFVDTVCSYVAFCRDMIIPCRRVKIYSNNKPWVTKSVKSCIQKKKLFFKQGSNSDLYLANKELKREILLAKQNxKTELENKMATNKLGSAWDSLKTITGLHNLKSSNQINLVGYSTDFELANALNHFYNRFNHLDFTSEIEELNSKLTGGQHFIIQQTAVHKAFLSVRVNKSCGPDNICGRTLKICARELSPIFEYIFNRSLLEQQVPKVWKDAVVVPVPKSKSPQTFNEFRPIALTSIVMKIFEKFVRSEMLRRTEYALDPMQFAYRPHRGVEDATVTLFNLLFKHLEKNGSHARLLFVDFSSAFNTIQPHILIKRLLEQFDLSNNLVGWILNFLTNRTQSVRVNGCLSDKVCSSTGSPQGCVLSPLLYILYTNMCQSRWENRTIIKYADDTVIVSQLHDDETGHGPVLTDFVRWCEESYLQLNVLKTKDMIVDFRKAAHSQVSTSIKNQTVESVQSYKYLGTIIDSKLSFDENCAAVCKKGHQRLFCLRKLNYFHIDKQMMNLFYHAFLESVLSFALVSWFGNLSVKNKNSLNQIVKWSSKLTGVSLANLEAVYTRQLKRITNSILNDTAHPLHSEFQLLPSGRRFLVLSCKTKRYKNSFIPAAIRHLNKT
>CR1-22_HM_gag#LINE/Rex-Babar 216-1280   [Hydra magnipapillata]
MELSNETRKKVLEEMYSVYKKETELMFKEQEKNLISIISANTKMTNDRMAKVEKDTHKNAKIIKSLENKVASIVESLNFHKELFDRKIKTLSDSHEKDNVLSKGAIKTYNDNVEVMNNTNIESVRILNTRIDELNKKLKSAPLSNKLESFATILKGKSAEEVQHRHRLINIVTAETENRQNRASNVIIVGLPKSDDYDNIIAANKFFNACGVDSAKIGYISRIKSSKINNTIHNSNIVKVSLINEQSRSEVLQKCSHHNIAEFKGIFCREDRTRSQQEAFNELRSKMKKLNDELYAADVLDKPFRNVIHKRTGEICCIDVQKSNELHKYVFASPASTLAPHRKRLLTTVQTATT
>CR1-22_HM_pol#LINE/Rex-Babar 1201-4290   [Hydra magnipapillata]
MSLPPQQAPLHRTANVFSQPCKLQPHNISPIPQTKAKRKQHLPNNSLQDLQSQATSPRLKLPSINFFRFWANNPCSLNSEKLHELVARLTSIDKSEWPHVIFFSETWFSATSDTTIAGYQLHNTDRDGRGGGVAIYIIDGLANSKVTDVTLTSTSVEQIWHIIHFENESILLGCMYRPIDKNDDTLTQILASIKAAQQILPKLKCSTMLLYGDFNFSHTSYKSCNVGGGVETTAHVTEQRPGDIKFQECLKDCYLTQLVTFPTYRNNMLATPCSTLDLIITNNPDRLISINEGNSLGHTPMGKAHCLLVGLFAVYFNKNKLTSPSRRRLIWSKANFDAISLHITSKEIPTNLSANDLYSWFIDVYNEAVKLHIPSTTTPFKIKQDLWVTPKVLEAVKLKRSTWAKYVAAGKDSHAKLRNEHQAACKHVKKVVNAAVLHYEQQLVSSFKEFPKRLYSHVKNKLKVHNHISMLETSDDNITEDSKFITSTINNYFHSVFVEEPPTPLPIFEERTKSTCEIDESLFTAATVQNYLFCLDDTKSMGLDGVHPRVLKNCAKAFAIPLSLIFKQSFQTGNVPDLWRKSNVTPIFKKGNKLKACNYRPVSLTSVPCKVMERIIKERIMKHCTLHNLISKSQHGFVNHRGCLTNLIESXDILTEAAYRGHIVDIIFTDFAKAFDTVPHKRLLHKIQAYGIRGQLFHWISAWLSERKQRVVIGEQTSEWKRVTSGVPQGSVLGPLLFVLFVNDYPDGISNYTKLYADDSKIIGIINNNQSSSDYETLQTDIDNAVSWSHKWLMHFNIEKCKVMHVGCRKNKSTHTYTMADINGNRHNLSPTCIERDLGVLISDNLKVKAQVEAAASAGNRMLGRLKKTFRCRSLQLWKKLYQLYVRPHLEYCVQAWSPHLKSEIVLLERVQKRATKVISSIKHFNYEKRLQLLDLTTLEERRIRSDLILQYKIAHQLQEVKFYIPQAQPFLLNSRYNLRRNSRCLKPQLIKRNSERQHFFTNRVTNRWNKLAQNVVDAPTVHFFKKHV
>CR1-23_DR_pol#LINE/Rex-Babar 1-2106 Fragment [Danio rerio]
LDLCYGSIKGAMKAVAGPPVGFSDHNVVHLLPVYKSVLRREKVRKREIKVWSEDNSLALQGCFDCTDWSVFKETSESIDELTEVVCDYISFCTDMIIPHKTVIDFPNNKPWLSNDTKSLLQSKHKYFKQGDMSSVKQLKKAVRVQINKDKIRYKDKIEKQLSSNNLRSAWQGVKAMAGCKEDRGGSEINLNGFSSAREFAEELNTFYLRFDEDDFKSENDNLKQHLSCSNSVNISRIQVKGLLQRTNTKKSPGPDNIGGRVLHTCAEQLSEIFHYIFSQSLMLQRVPEIWKKSVIVPIAKTKFPRELNDFRPVALTSLVMKCFERFIKGEILLQSKDKFDPLQFAFRQSRGVEDANLTMLNYLFNHLEKPKTHARLLFIDFSSAFNTMKPHLLVEKLISLFNLDLNICGWILDFLVGRQQCVRVNGALSDFQYCSTGSPQGCCLSPLLFIMYTNDCRSIHRDCHIIKYADDSVIVSLLHDQDLGHGPAVQEFTSWCDRFSLQLNASKTKDMVIDYRKASPTPNITNIKGLDIEIVDTHKYLGVVIDNMLTFQPNTQAVYKKVQQRLFFLRKLRSFQVCTSMMTLFYKQFIESVLSFCIVAWYGNLSVSSKNRLSSLVKVAGKIIGFNQTGLMVIYHNYVLXRAQGILCTPDHPLYSVFQLLPSGRRFRVPICRTNRTRNSFIMVAIRSLNESRGEGDVSIX
>CR1-26_DR_pol#LINE/Rex-Babar 106-2939 via tfasty with REX1-1_DR_pol, 1 frameshift. [Danio rerio]
MHYQHIADKLAGSCNLRQTFRIYQFYSTGLTTHCPLPQPLQRRRRKRHKRGKRGGLHARLKSRANRPPLPSILLANVRSLDNKLDELRARITSQREVRECCALIFTETWLSEKVPGTAVQLQTHSLHRGDRTTASGKAKGGGVCVFINNSWCGDVQTVHKHCSPDVEFLLLKCRPYYLPREFTAVFIAAVYIPPRANATAALGKLFNVFNAQEMAHPDAVIIAAGDFNQCNLRTVLPKYHQHVSIPTRENNTLDNVYSNIRGAYRAAPRPHFGQSDHISLFLYPAYRQRLKQTNPITKLVKIWNPQTESTLQDCFALTDWDVFKTAATKEDLSVNVQDYAEYVTGYISTCVENIIPTIQVKKFPNQKPWINSKVRHMLNARSLAFTSGNENEYKSAKYGLRSAIKEAKRQYKEKLDNTYSTASAGQMWRGLQHITDYKSTTNVTISASESLPDDLNTFYARFESSSINTEQRHTQTQTSQPALPPPAVTPAAVHKALRKINPRKAAGPDNIPGQALKACASELVDVFTSIFNLSLSQSSVPTCFKTTTIVPLPKKSPLTCLNDYRPIALTPIIAKCFERVVLPLIQSSIPDTLDPLQYAYRTNRSTSDAIAAALHTSLSHLEDKDTYIRMLFIDYSSAFNTVIPHKLTHKLSELGLHPTLCDWLLDFLTGRPQSVRIGNKSSSTILTNIGTPQGCVLSPILYTLFTHDCVASHKNNTIIKFADDTAVIGCITGGDEAAYRKEVASLVTWCENNNLTLNTDKTKEMIVDMRKERRTHQPLFIRKLEVERVSSFKYLGVHISEDLTWTLNTTQLVKKAQQRLYFLRKLRKLGLSSKILSNFYSCVVESILTNCITVWYGNATEKDRKRLQRVVRTAEKIIRSPLPSLQTIYHHRVHKRTASILKDPTHPQHRLFTLLPSGRRYRSVRCRTARLKNSFFPSAIRLLNR
>CR1-28_DR_pol#LINE/Rex-Babar 4-3090 [Danio rerio]
MALLCWRRGKGCLLYFTCLSLLYLSDMLVFSFLFIYWTLKLLRGGRDGNCWSYRSDSSELINKKLLVVSWLILTSCVAQGVLDKIQRYSRTELLDLRSCGGLSPTRFEMDLPEELLRQPRRVSGRVRKRGGRGGVRQRVRRASKLPLPPVILCNPRSLRNKLDELRTQAGACFEYRESGLMVFTETWLCNEVPESLIQVDGFSHIRLDRDENSGKTRGGGVCVYINDRWCRNFAVRESICNPDLELLCVTLRPFYLPREFTNIFICAVYIPPSGNAIRAANQIADCVHKHLQNKPDAPFLILGDFNQCGLEKSLPGFFQYVKCGTRKKNILDKCYGNIKDAYVAKARPPLGNSDHNVIHLLPTYRSVFKTSKPTTKVMKTWSNESIEELKGCFLCTDWDMFYQDANIDTVTETITAYISFCVDSIIPQRTIKCYPNSKPYITGGIKSCIKRKKLAFRAGDTVGLRAAQKDLNRELRTARIKYKEQTEQHLLKSNTKELWNSIRRMTNMTPKRKALFACNESVKANELNDFYMRFETDNLKKCEEILGEVNCNMAEKRRLIHQGDVTKVFKSLCSSKAMGPDGITCFLLKTFAEELTPAWHRLFQLSVDTHTVPKLWKKSVIIPIPKKPCPQDNNDYRPVALTSNVMKSFEKIIIKELRKEVEPYLDQYQFAYKSNRGTIDAISTLTHLVLKHLESPVAYARLLFIDFSSAFNSIQPHKLLEKLVKMQVNPFVIKWFYSFLTDRTQQVKFNSGLSDVATSSTGAPQGCVSSPFLFTLYTNDCVRQQTNQYILKFSDDTVLLHLFTKDASIMEYRAAVEWFVSWCDDHNLEINVKKTEEVIIDPRSVSDRSSIVVYDKDIKQVDSYKYLGVNIDXELNWHSQVSSLCARIHQRLHFLRRLRLFGVSSSIMMTFYKATIESILRYGIIVWFGNLTVKMKTQVNNLMRVAGKIMGIKTLGSLKDIFELCTIQQANKILSDSSHVLSVEYELMNSGRRYRVPLCKHNRYKHSFVPFSIKLINEQXRKDGQRLR
>CR1-29_DR_pol#LINE/Rex-Babar 2-2296 Fragment [Danio rerio]
VVYIPPQADAGWALSRLHDVLSGYINKHPDAALIIAGDFNKANLRQVMPNFHQHVSCPTRGLNTLDHCYTQFKNAYKARSLPAFGRSDHAAIFLXPEYKQRLVQDSPVQRVVTRWSSHSETMLQAALDDVDWDMFRVSSLDVSEFTDVALSFINTLIEQVTETITIRSFPNQKPWVDKTIRAAVNTRTAAYNEALSSGNMSKYKASCYALRRAVRAAKHKYKERIESHFQLNDSRRMWQGLRTICTFGNKSSAEVRADPLLADELNIFYGRFDCGGVILPTSASGNVRQGCDDPVITVSEDEVRRALKRVNVRKAAGPDGIPGRVLRSCAGQLAGLFTSIFNESLATSVVPTSFKKSIIIPVPKTNKPSCLNDYRPVALTSLVMKVFERLVKSYVCSSLPVTLDPFQFAFRLNRSTDDAISHVLHSSLTHLDSKXGNYVRLLFIDYSSAFNTIVPIKLASKLIDLGLNSSLCNWIQDFLTGRSQVVRVGQFTSNSITLNIGAPQGCVLSPLLYSLYTHDCVSSHSSTSIIKFADDTVVLGLISNNDETAYLDEVQRLTSWCQDNFLFLNVNKTKELIMDFRRRQQQPYTPLMISGTPVERVSSFKYLXVIISENLTWTTHIERQVNRARQRLYHLRQLRKFRVSPAILKTFYSGTVESVLTQGISVWYGNSSNQDRKALQRVVRLAERISGSAFPSLQDIYIKRCKNRAVKICKDLNHPDNYLFTLLPSRKRFRSLMAKTERLRRSFFPQAIRLLNSNPVLXIT
>CR1-30_DR_pol#LINE/Rex-Babar 51-1743 Fragment. Via tfasty/estwise with CR1-21_DR_pol, 2 frameshifts and 2 stopcodons [Danio rerio]
LKREILLSVIDxKKKLSGKLKAKAVYKGKLKMGNVGSAWDGMHLITGQDSKKTNKICLNEFTSDxSFSQNFNxFFSRFDSHDFKQEIERMKNECRIDREYDCIFFDVKDVIMSFKQSKIGKAPGPDKIGGRLLKECAEQLGPIFYEIFVLSFQQQKVPALWKQSTVIPVPKKQKPQKIEDFRPVALTSLVMKSFEKIVKREITQKTQSVLDPFQFAYRPKRGVEDAVGTLLHLVLKHLDKPKTLAKLLFIDFSSAFNTIQPHILVEKLINEFELDRMLVGWILDFLVQRTQRVKVNNCFSEWLVSSTGSPQGCVLSPVLFILYTNSCRSIFSNRYILKFADDSVIVSLLSEEDSTHGPVIDYFSSWCQEAFLQVNVLKTKEMTIDFNRKRRLIKGKQTSINGVDVESVDQYRYLGTVLDNKLSFSANTNMLCKKGQQRLYCLQKLRSFNIDKSLMCMFYSSYIQSLLSFSLLCWFNSLSVKNKSCLEKIVNLGGKITGRKQMTMAQLYHRQVLSKAQSILSDDSHPMHHEFYLLPSGIRYRTPISKTNRFKLSFIPSAVKFLNLG
>CR1-31_DR_pol#LINE/Rex-Babar 4-3063 [Danio rerio]
MTKMAARAHAAASLSPDKTVFLCSSSCTSQCFCASTSRLSVRNRAYSRTFLLDIGRNKLYKLNSADTEELQDLGLLRMPTHPPTPTSPPRPQWRRFKRRERKQKRGKRGGIRTRLAANPHKPAIPSIILANVRSLDNKLDYIRLLRSSQRTVKDCCVFVFTETWLNDNVPDSAIQLDQLTCYRADRAIVAGGKTRGGGLCVYINESWCRDAVVVRKHCSPLVEFMIIKCRPFYLPREYTAILLFAVYIPPSSNANNRSEALNDLYLHISEQQTGHPDAFLILAGDFNHADLKSVFPKIQQHIDFPTRGNNTLDFVYTTQRGAYKAFPLPHLGASDHLTVMLMPAYRPIVKVTKPVCKEIQVWPEGSSEALQDCFNTTDWDMFKQAATYNNTTDLQEYAETVTAYINKCTEDVTVTKTITVRPNQKPWLTGEVFNLLKARNTAFRAGDEASLKSARANLSRGIREAKRQYSRGIAHRFNDSRDTRSLWRGIQSITDYKPQPQTCDSTIPLLNELNKFFARFEVQNSTIAQKMPPPPGDQVMTLSPDSVRRSLSRINARKAPGPDNIPGRVLRDCASELTNVFTDIFNISLTQAVVPTCFKATTIIPVPKNSSPSCFNDYRPIALTPIIMKCFERLVMQHIKSVLPPSLDPFQFAYRPNRSADDAISTALHTALTHLDKKDSCVRMLFIDFSSAFNTIIPQQLSQKLLQLGLNTSLCNWLLDFLTGRPQAVRAGSNTSSTITLNTGAPQGCVLSPILFTLLTHDCAPSHNSNLFIKFADDTTVVGLINKNDEENYRSEVSRLAEWCRDNNLFLNVEKTKEIVVDFRKEHTLHAPLTINGATVERVSSTKFLGVHITEDLSWTKNSTALAKKSQQRLYFLRKLKRARAPAPIMYTFYRGTIESILTSCITVWFGTCNASCRKTLQRIVRTAEKIIGVSLPSLQDIYSTRLTRKALCITADATHPMHSFFSLLPSGRRLRSLQARTNRLKDSFIHQAVRKLNSLPALLPAPSPRTSSPRTSGL
>CR1-38_DR_pol#LINE/Rex-Babar 429-3323 Pos 1-276 appear to contain matches to L1-type pol. Perhaps consensus is an artefact. [Danio rerio]
MTTFVELFIGLLIIGHLFSAGYTHITTNSDLIMVYTREDLLQLRSADFDAPPNLPDCLRNRVTASTCRRKRGHRGGVRRRFRRRGNRPPLPAIILSNVRSLQQKMDELRIKARACFEYREAGLLALTETWLRPEIPSSLVEVQGFSLIRADRSAASGKSRGGGICVYVNERWCSHITIKSAVCNPDIELLCLSLRPFYLPREFGNILICVAYVPPSAKAAIAASAIRDCIQDQLERTPGAPVFILGDFNHCKLETVLSGYDQYVKDNTRDKNVLDKCYGNIKEAYTSRVRPPLSNSDHNTVFLIPTYKTLLKKNKPVVKTVNVWSEDSVEALKGCFLCTDWEVFHSEDINETATVITDYINFCTENVIPKKEIVIYANNKPYITKDIKDCIKRKKLAFHNHDHQGLRVTQKELNGLLRDARIKHKQCLENRLHMSNSKQLWDSMKSMSNMQSFTPSISIFDDSQKVNELNDFFLRFENCEYTPDNSSEVMSPRGVTYDRPLIDPKQINFYFKHIGSNKSAGPDGILPYTVKCCADELTPVWVPIFQKSLDSGIVPSLWKKSLIVPVPKLARPSEYNDFRPVALTSVIMKCFEKCVVSIVKSEVASNLDPLQFAYRYGRGTEDAVNSISHLILKHLDNPKAYARLLFIDFSSAFNTIQPHLLIEKMEQLNINPFICKWYFSFLTNRTQVVKVKNICSEEKNSSTGVPQGCVSSPILFTLFTNECISKHSQNFIFKYSDDTAILSLLYEKDDIGVIYQSEISQFIDWCDRNKLKINTKKTEEMVFDPKCIGDHRQVVVHDDPITQSDTYKYLGIHIDSSFTWKTHIDWVCSRLHQRLYFLRRLRLFGVNKKLMMLFYKAVLESIVRYGITVWFGNLSVQCKSKLMHLLKTAWKIVGHNENFNPQVLYENCVLNQVDRIVKDPTHFLFPQYELLPSGRRYRVPKCRLNRYKKSFVPVSVGLLNKSIS
>CR1-40_DR_pol#LINE/Rex-Babar 3-2952 Nearly complete, via tfasty with CR1-31_DR_pol, 1 frameshift. [Danio rerio]
SRWRRAWPPCCELPANFVVFCVFYLYFCRFSVLDVHTLITYDRHTLREIGSLVAHRRPDFEFFNDALFTNTATEPFVWVTQPKRRRKRSRKRGKRAGVLVRLRRRGFRPPLPTILLANVQSLDNKLCELRARISFQRETRNCCIICLTETWLSAEVPDTAVELSGFSVHRADRTKELTGKSKGGGVCFFINNSWCDERNIHPVRSFCSPDLEYLMLRCRPYWLPREFTAVIITAVYIHPQANTEQALRELYGSISEQETAHPEAAFIVTGDFNNANLRKIAPKYYQHITTNTRGDRILDHCYSPFRDAYKSLPRPPFGKSDHSSVLLLPAYRQKLKREPPTLRTFQSWTDQSDSILQDCFDHVDWDMFRAACDDDIEVYSDTVTCFIRKCIEDMVPTKTVRIYPNQKPWINGEVRTALSVRASAYKSRNAEEQKQANYNLRKTIKAAKRQYRDKVEGQFNTNNARSMWQGLNYITDFKSNKPATVNIAASLPDELNSFYARFEAQDSARTLRAPAAETETASTLSVSVADVTRSFRRVNIRKATGPDGIPGRVLKACAHQLAGVFTDIFNLSLSQSVVPTCFKTATIVPIPKSAKTTCLNDWRPIALTPIFSKCFEKLIKKHICSVLPAHTDPLQFAYRNNRSTDDAIAFTLHTALSHLENKNTYVRMLFVDYSSAFNTIVPAKLVVKLQALGLHSSLCNWILDFLSSRRQVVRMNNITSSTLILNTGAPQGCVLSPLLYSLYTHDCTAKHSSNVIVKFADDTTVVGLITDNDETAYREEVHTLTQWCEENHLSLNISKTKELVVDFRREKREHTPITINGTPVERVSTFKFLGVHIAEDLTWTAHTDAVLRKAQQRLFFLRRLRRFGMSPHILRSFYTCTVESILSGCITTWYGNSTSSNRKGLHRIVRTAGRVVGGELPSLQDIYTRRCMRKAKRIISDSSHPSHRLFSLLPSGRRFRSIRSRTSRLKESFFPQTIRLMNT
>CR1-43_DR_pol#LINE/Rex-Babar 3-752 [Danio rerio]
SPLLFILYTNMCQSTFENHFILKYADDTVIVSLLQGDENSHGPIVDHFVQWCEESNLKLNATKTKDMIIDFRRNHTAAEVTNIRGQKVECVENYKYLGTIIDRSLNFEANCDAVCKKGHQRLYCLRKLSRFHIGPNMLTLFFYRAFIESILSFALVAWFGGLSLKNRNRLSQVVRWSSRLIGESQLSIESLYSRQLLRIAQNISSCSSHPLSEEFILLPSGRRFQMLFSRTKRFRNSFVPSSIVALNKL
>REX1-1_AFC_pol#LINE/Rex-Babar 6-2936  [Cichlidae]
MAPSMAASSRAPPSNGFFLCLILLFLHFFTSSTCLLVYDRQTLLDIKDGLSYNFPEFKFCNTDAPFADPPFISPETPLFSGPGGRKRRRRGRRSGVLVRLRRRTYRPPLPSLLLANVQSLENKLCELRARISFQREMRDCCVICLTETWLSDKVPDSAIQLPGFSVHRADRSQDLTGKSRGGGVCFMINNSWCDYANVHPVKSFCSPDLEYLMIKCRPFWLPREFTAVIITAVYIPPQADTDRALRELYSAISSEETAHPEAAFITAGDFNKGNLKKVSPKLHQHIHFNTRGDRLLDHCYTSFRDAYKALPRAPFGQSDHRSILLLPAYRQKLKQEAPTRRAVHCWTDQSESALRDCFDHADWEMFHVAARDIDEYTDSVCGFIRKCVEDVVPSRTVKSFPNQKPWINGDVRAALAARSTAFASANTSDYKHAHYQLRKTIKAAKREYRDRVEQQFDNPRSMWQGLNTITDFRGKTSTPQTTASLCEDLNVFYARFDTANTMRPDSVRTADDVSAHTVSEEDVRKCFRKVNARKATGPDGIPGRVLKSCAAQLAGVFTHIFNLSLSLSVVPACFKMATIVPVPKSSTISSLNDWRPVALTPIVSKCFEKLVRDFICSALPDSLDPLQFAYRHNRSTDDAIALTLHTALSHLEKRDTYVRMLFVDYSSAFNTIVPSKLDRKLQDLGLSSSLCSWILSFLSDRRQVVRLGSITSSPITLNTGAPQGCVLSPLLYSLYTYDCTATNSSNIIVKFADDTTVVGLITNGDETAYREEVSALTHWCQDNHLTLNVAKTKELIVDFRRCREVHTPITINGAAVERVSSFRFLGVHLAEDLTWSVHTNKTVKKAQQRLFFLRRLKRFGMSPRILRTFYHCAIESILTGCITTWYGNSTAYNCKALQRVVRCSERIIGGELPSLQDIYRKRCLRKAGRIIKDSSHPSHKLFRLLPSGRRFCSIRSRTSRLRDSFFHQAIRLLNTS
>REX1-1_BF_pol#LINE/Rex-Babar 50-2938  [Branchiostoma floridae]
MCYANISNVRTRGNRGGLARKQKHCRIKSLVTNRLDVYANDYVSRRCVVNNRVLRKITTVPATHGRSTQQNFRTLPCLFLSNVRSLVSKKCELEATLAYHSAQLACITETWTVPEIPDDVLAIDGFRLFRKDRLYGKGGGVALYIAEDIPVKRLYDLEIDGVEVMWLQARPKWLPRTVPILFVGIVYHPPCNNNKEGATKMVEHLITSCDCLYRKQPHAGLLLCGDFNNLPIQKLITVHPHLKQVVTQATRGSATLDLILTNLAQYYCTPRTLPPIGSSDHSSVLLPPCVEHPTRSKPVKVMRRVATTVTKLNLGLSLAMTDWSPVYEAALVEEKVKTFYSLTMTLVNQHLPVKVSATRACDKKWMTEGVKRAIRKRAEEFKRHGKSARWKSLRNNVQTSIRHAKNWHYRNFIQTLKQEDPRKWWGAVNRELGRAQERSNSTTIEDVPDHEVAEVLNQYFSSAWCPGTSLHLFPLQCPTPCVDLCSIGEVKTLLKGLNPHKASGPDDLPTWTLKHYADDLAPVITHLFNASYEEGVVPSIWKAANVVPVPKSKGAANASEMRPVSLLPVAAKLMERCILKRLLPSITPAIRNQYAYLKGSSTVLAAIRMVHTWLSALDSRRHAAVLALFADMSKAFDRVNHSILLQRVNDVVTNPRMVAWIQNYLQGRTQRVVANGKVSEWRVLTSGVPQGGVLSPYLFLLFMSTRDVVYSDTLDVGYADDVGLSRSISLEKDRVDNSMREEALQLDSWAECNDMLLNGKKSQSLLICFSRNIPLLPPLSLGGEPVPFSRVAKGLGFIFDCKLSWHDHVQSLVSKASSRLHYLRLLTKQGMCVADLVQIYLSLIRSVLEYGHVLLVGCSKEQSDSMERVQKRALRIISLGGRRSVPNLPSLKERREAAAVKLFKDMLRPEHPLHDLVPPQRRTVTGRQLRNKNAFTLPKARTDRLKQSFLHTAVRLYNDSIS
>REX1-1_DR_pol#LINE/Rex-Babar 11-2971 [Danio rerio]
MAARAQREAQGLSSFCIFAVLFLLISGLFVQNSGAFTSYTRQELLDIGLCIPDSFISNLRLIHEIARTPRAGRPARPGGSARRPRRERKQRRGKRGGLRAKLKLTPHRLSLPSIFLANVRSLVNKMDEIRLRINHSKRLWNCNVMIFTETWLNSGIPDNAVSLTEHHTFRADRTADDSGKTRGGGLCIYINKAWCTNSVVVGRHCSANLEFLMVKCRPFYLPREFTSTIISAAYIPPDADAKLAMNELHAAISKQQTAHPEAAFIVAGDFNHSNLKTVLPKFHQNILCHTRGNKTLDHVYTNIAEAYAVTPLPHLGQSDHLSLFLTPKYSPLIDRVKPSVRTIKVWPAGVDSTLQDRFQHTDWGMFASQATHGSHTDIDSYTSSVLEYINTTIDSVTTQKQITTYPNQKPWMNKEVRLLLKARNTAFRSGDAQAYSTSRANLKRGIKKAKHCYKLKLEEHFSNSDPRRMWQGIQAITNYKPSQSTPTATDVSFLNELNDFYARFDRDNKEPYTRITSSTDHSPITLTSSEVHTALSRINGRKAAGPDGIPGRVLKVCAEQLAGVFTDIFNLSLNLAAVPTCFKTTSIVPVPKHSSPTCLNDYRPVALTPIIMKCFERLVLAHLKDSLPSTLDPHQFAYRGNRSTDDAVSIALHSVLTHLDNKNTYARMLFVDFSSAFNTVIPSKLLIKLRDLDIDTSLCNWIMDFLTNRPQNVRSGHICSTTVTLNTGVPQGCVLSPFLYSLFTVDCRPVNRSNTIIKFADDTTVIGLISNNDETAYREEIQHLATWCTDNNLLLNTNKTKELIVDFRKGRTGSHDPIHINGMAVEPVSSFKFLGTHISKDLSWTTNTSSLIKKAHQRLFFLRQLKKNQLSSAVLVNFYRCTIESILTNCVTVWYGSCSVAERKALQRVVKTAQRITGTTLPAIEDIQKKHCLRRARSILKDTFHPAHRQFSLLPSGRRFRLPRTKTSRLRNSFFPRAVSLLNSAPH
>REX1-1_GA_pol#LINE/Rex-Babar 3-2828  [Gasterosteus aculeatus]
SVELLDILVKGALTFRHAVRRRRRGKRAGSLVRLRRRGSRTPLPGIFLSNVRSLCNKLDEIQLLMRRDRDFSTSSVLCFTETWLCGSIPDSALQLAGFQLLRADRDTELSGKTKGGGICFYFNNSWCNDVTVILQHCSPDLETFFINCKPFYSPREFASFILVGVYMPPAGNVHEAQRTLADQIRRVERTNPDSLVIVLGDFNKGNLTHELPKYRQFIKCPTREENTLDHCYTTVSRAYHAVPRAALGHSDHVMVHLIPAYRQKLKLCKPAVREFKKWTSEALEDLRACFDCTDWDVFRTATDSLDEFTEAVTSYIGFCEDSCVPSCTRVSYNNDKPWFTAELRTLRLQKDQAFRSGDKDLYTEAKYKFSKAVRDAKRLYSEKLQQQFSASDSASVWRGLKHLTNYKPKTPHSMNDLRLADELNEFYCRFERQCPDPIPHSSTNLLQSPSPPSPSPSGAHASSSISPSPPPPATTLSILERDVNRLFRRLNPRKAAGPDSVSPHSLKHCADQLSPVFTDIFNTSLETCHVPACFKASTIIPVPKKPRITGLNDYRPVALTSVVMKSFERLVLTHLKSLTDPLLDPLQFAYRANRSVDDAVNMALHYILQHLDSPGTYARILFVDFSSAFNTIIPSLLQDKLSQLHVPDSTCKWITDFLSDRKQHVKLGKHVSASRTISTGSPQGCVLSPLLFSLYTNSCTSSHQSVKLLKFADDTTLIGLISGGDESAYRWESDHLVSWCSQNNLELNALKTVEMVVDFRRNRAPPSPITLCDSPVTIVDSFRFLGSIITQDLKWELNISSITKKAQQRLFFLRQLKKFNLPKTMMVHFYTAIIESILCSSITVWYAAATAKDKGRLQRVIRSAERVIGCNLPSLQDLFASRSLKRAKKIAADPSHPGQKLFVPLPSGRRLRSIRTKTSRHTNSFFPSAVGLINRARSPTA
>REX1-1_XT_pol#LINE/Rex-Babar 3-2066  [Xenopus tropicalis]
SDPITVMLTPTYTPMLKRTKPVTKQVRTWPEGATEALQDCFECTEWSVFREAATTDHHIDINEYAVAVTGYIDKCIGDXTXTKTITTRANQKPWFTAEVRELLKTRDAAYEANDEVALRAARINLSRGIKLAKREYSKKVSDHFACSRDSRRMWQGIQTITDYKAPPRMCVNDTSLPDALNIFYARFETQNNKPAWKTTLLPDNQVLSLSAASVRRTLAGVNPHKAAGPDNIPGRVLRACADQLTDVLVDIFNISLSQAVVPQCFKTTIIRPVPKTATASELNDYRPVALTPIIMKCFERLVLSHIKNQLPPKLDPLQFAYQSNRSTDDAISMALHLTLSHLDHRNAHVRMLFIDFSSAFNTIIPQQLISKLDLLGLNTSICNWILDFLTGRPQTVQIGNTRSNTITVSTGAPQGCVLSPLLFTLLTHDCTSNSDINHIIKFADDTTVVGLIRDNDDTAYREEVQQLALWCKDNNLSLNVNKTKELIIDFRKTKAVHLPLSIDGVTVERVKSTKFLGVHITEDLSWTININSLTKRAQQRLHFLRRLKKVHLPKSILNIFYRGTIESVLTSCITVWYGNCHASDRRALQRIVRTAERIIGNSLPSLQDIYTSRCLRKAISIMVDPYHPSHHLFTPLPSGRRLRSIRSKSARLCNSFFPQAVRLLNTMLPSSTLDSLLHTFSGLHNTI
>REX1-2_AFC_pol#LINE/Rex-Babar 200-2983  [Cichlidae]
WPSEISRENKGKRRRPRGKRAGVRNRLRARAHRTPLPSILLANVQSLENKLDDLRARVKFQRDIRDCNLLCFTETWLNPAVPDHAIQPAEFFSVHRMDRTRDSGKSRGGGVCLMVNNNWCNSANVVPLTRSCTPNLELLSIMCRPFYLPREFTSVIVSAVYIPPQADTVTALCELHEALTQHQTQHRDAALIVTGDFNSANLKRAAPNFYQHITCPTRGERTLDHCYTTVKDGYKAQSRPPFGKSDHAAIFLMPKYKQRLKQEVPVQRKVARWTDQSVAALQDALDDADWGMFRNSSDDDVNVFTEAVVGFIGKLADDTVETKTITTFPNQKPWVDKTIRDALRSRTAAYNTGLTTGDMDPYKAASYNVRRAVKEAKQRYGRKLESQLQQSDSRSLWRGLRTITDYKAPTTGMTNAAVTLADELNTFYARFEAAAKDSNNASASGANGCRQEDTASTGNVLVISEHEVRRAFKRVNTRKAAGPDGIPGRILRDCAYQLAPVFTEIFNISLSQSVIPTCFKESIIVPVPKKPHPASLNDYRPVALTSVVMKCFERLVRDFIISSLPDTLDPLQFAYRPNRSTDDAISHLLHTSLTHLDTRRGNYVKMLFIDYSSAFNTIIPSTLTTKLEHLGLSSSMCQWISNFLTGRPQAVRMGGHVSASTTLSTGAPQGCVLSPLLYSLYTYDCVATTSSTTIIKFADDTVVVGLISDNNETAYLKEIRNLENWCQRNNLLLNVSKTKELIVDFSTKQERNYQTPVINECPVERVDSFKYLGVHITQDLSWSCHINTVVKKARQRLYHLRRLRDFQLPSKVLRNFYSCTIESILTGNILTWFGNSTMQDRRALQRVVRSAERTIRSELPDLHSIYSRRCWTKARKIVKDLSHPNNRLFSLLRSGKRFRSLKTNTERLRRSFFPQAIRSLNHTTTQY
>REX1-2_XT_pol#LINE/Rex-Babar 11-2905  [Xenopus tropicalis]
MAPVRMAAVAQCPPQLCFFLMFVVLFFSFFATCNALISYDRQTLLDIRQNSQSGPSQTEFFVNRGDLPWLPGQKKHRRKRGKRAGILVRLRNRQHRAPLPSILLANVQSLENKLDELRARITFHRDIKNCNIFVFTETWLVPSIPDSAIVPEGLSIHRRDRTIDSGKCRGGGVCVLTNKRWCTDVQTVSSGCSPDLEYLMIRCRPFYLPREFTAIFCTAVYIPPHADTTRALDELFDAIDRQETLHPEAAFIVAGDFNKANMKKVLPKFYQHVNFPTRGENILDHVYTPYAHAYKARPRPAFGKSDHSSVLLLPAYRQKLKREQPMMRSVQRWTDQSDSTLRHCFNITDWEVFRTAADNNINNYAEYVMDFIHKCINDVVPRVNVRTYPNQKPWVNGEVRAALRARTAAFKSGDPSEYKSSRYALRKAIKTAKGQYREKVESCYSNSNIRNMWSGLKTITDYKGKSCRVGEVTASLPDELNTFYARFDKHLSQELLLEEDGRPYQISQADVCKHFRKVNTRKAPGPDNIPGRVFKACAHELADVFTDIFNLSLLQSAVPTCFKRTTIIPVPKKMNVSCLNDYRPVALTSIAMKCFERIVKAHITSLLPASLDPLQFAYRSNRSTDDAIAIALHTALSHLDQRNTYVRMLFIDYSSAFNTIVPSRLVMKLRDLNIGSSLCSWILDFLTNRPQVVRIGNITSSTLTLSTGAPQGCVLSPLLYTLFTHDCTATHSSNTIIKFADDTTIIGCISDGDESAYRAEVRALTSWCRDNNLLLNVSKTKELIVDYRRLQGGGHTPIHIEGAEVERVSCFRFLGINISEDLSWSHHVGVITKAARQRLFFLRRLRRFGMDSRILTNFYRCTIESILSGCITTWYGSCNALDRKALQRVVRSAERITRTELPAMQDLYRQRCRRKMQRILSDPSHPSHRLFTLLPSGRRYRSIQTRTSRYRDSFYPQAIRLLNC
>REX1-3_AFC_pol#LINE/Rex-Babar 8-2861 via tfasty with Babar_pol, 1 frameshift. [Cichlidae]
MAPRMDALVLQCVTFVLFLCISSVSGHSSGYSYTREELLNYRTTTPVDLFPIFVASAADLLLTLIRKVRRRKRGKRAGALVRLRRRGLRTALPGIFLSNVRSLGNKIDELALMRSMNRDFASSCVLCFTESWLSEDIPDCALKLEGFHLLRADRQAALSGKTKGGGVCFYINSGWCTDVTVIAQHCSSSLEYLFIHCKPFYSPREFASFILAAVYIPPDADAQAAQCALAEQILHMERTFPDSLIIALGDFNKANLSHELPKYKQYIKCPTREERTLDHCYSTISGAYRAVPRASLGLSDHVMIHLIPAYRQRLKLSKPVVRTKKLWSNEAVEELRTCLESTDWDTMKAASNSLDEFTDTVTSYIHFCEDSIVPSRTRVSYNNDKPWFTPKLKKLWLEKRKAFRSGDRDCYREAKYRFTKEVDIAKHQHSEKMQQQISENDSASVWKGFRNITNYKPKTPHSTDDLLLANTLNDFYCRFDEPSGSLHTSNGPNNRGTLDTHSPTSPPSIEPSPPSNCSPTTPPSSPHTKEDFTPPPPTTTLHIHEADVRKQFKSLNARKAPGPDGVSPATLRHCANELAPVFSGIFNSSLQACHVPACFKSSTIIPVPKKPRITGLNDYXPVAXTSVVMXXFERLVLSHLKTLTAPLLDPLQFAYRANRSVDDAINMALHFILQHLDSPGTYARILFVDFSSAFNTILPDHLRGKLSQMNVPDPICRWITDFLTDRKQHVRLGKNVSDSRTISTGSPQGCVLSPLLFSLYTNCCTSTHQSVKLPLILTDTPITSVDSFRFLGTTITQDLKWEPTITSVIKKAQQRMYFLRQLKKFNLPTRTMMQFYTAIIESILTSSITVWYAGATIRDKQRLQRVVRSAEKVIGCRLPSLQDLYTSRTLRRAARISADPSHPGHSLFDLLPSGRRLRSIRTRTSRHKNSFFPSAVGHMNNNHMTVPATNT
>REX1-3_XT_pol#LINE/Rex-Babar 9-2972  [Xenopus tropicalis]
MAARTHREAQCLSSFCSFAVFYLLFSGLFVKNSSAFTSYTRQELLDIGLHIPDSLINNLRLVPEIVRTSEAAHSNWPGGSARRRRRDRKQRRGKRGGLRAKLRLTPHRLSLPSIFLANVRSLMNKMDEIRLRIIHSKRLWNCNVIIFTETWLNSDISDNAIALAEHHTFRADRTVNDSGKTRGGGLCIYVNNAWCTNSVIIGRHCSVNLEFLMVKCRPFYLPREFTSTIITATYIPPDADAKLAMNELHAAISKQQTSHPEAAFIVAGDFNHSNLKTVLPKFHQNIFCHTRGNKTLDHVYTNMAEAYNVDTLPHLGQSDHLSLFLTPKYLPLINRVQPSVKTIKVWPAGVDFTLQDRFLHTDWSVFATQATCGSHTNLDSYTSSVLDYINTTIDSVTTQKQITTYPNQKPWMNKEVRLLLKARNTAFRSGDAQAYSTSRANLKRGIKKAKHCYKLKLEEHFLHSDPRRMWQGIQAISNYKSSHFTPTATNVSFLNELNDFYACFEKDNKENVTKITASPNHSVITLTSSDVYNVLSRINVHKAAGPDGIPGRILRACAEQLAGVFTDIFNMSLAQAIVPACFKSTSIVPVPKHSSPTCLNDYRPVALTPIIMKCFERLVLTHLKDSFQSSLDPHQFAYRANRSTDDAISIALHSVLTHLDKTNTYARLLFVDFSSAFNTVLPSKLITKLRDLDINSSLCNWIMDFLTNRPQHVRSGHICSTTSTLNTGVPQGCVLSPFLYSLFTHDCRPVYGSNNIIKFADDTTVIGLISNNDESAYREEIKHLATWCTDNNLLLNTNKTKELIVDFRKGRRGSHEPIHINGMVVEPVSSFKFLGTHISENLSWATNISSLVKKAHQRLFFLRTLKKNQLSSTILVNFYRCTIESILTNCVTVWYGSCSVAERKALQRVVKTAQRIIGTPLPAIEDIQKKHCVRRARSILKDYSHPAHKLFSLLPSGRRFRCLRSRTNRLRNSFFHRAVSLLNSAPH
>REX1-4_XT_pol#LINE/Rex-Babar 500-3358  [Xenopus tropicalis]
MITTLKYTKETLLSINTSVPKELLRIKPAVFQLLKSLGALRKSKREKRGRGGRSRNWNTKQSLITTKKTNLAALGEARLRRLQYRSPLPSIFLSNARSLANKLDEWKLQIATDKILRGCCILLITETWLNPCIPDSAIELAGYTVYRQDRSQNSGKKRGGGLCIYVNSSWCTNSTVVVSHCSQDVEFMTIRCRPFYLPREFNAILLTAVYIPPDANASVALGLLYESISSKQNKYPEAVHIISGDFNHADLEDVLPKFYQHIKCATRGERTLDKLYTNIKQAYRAKPLAHLGQSDHVSLFLIPTYTSLRRQAPITTRTVTTWPADASLQLQDCFERTNWEIFKQQDLESYTSTVLDYIRFCTDNVTKDRTMRIYPNRKPWMTREVQKLLKDRNIAFRSGDRVLYSASRANLKRGIREAKAAYRKRIEEHLRSNNTRQVWRGVQHLTGYKSSNTGITEGDASLAEELNIFFARFEVPQTAGILQSPSYNEEVFTVGEVDMRQVLRKVNPRKAAGPDGVAGRVLKVCAEQLAGVLTEIFNQSLSQAFVPSCLKASIIVPVPKKSGTKSLNDFRPVALTSVIMKCFEKLMRNHIIACLPVDLDPFQFAYKAKRSTEDAVATALHATLTHLEQRGSYARLLFVDFSSAFNTILPQRLVSKLAVLGLPSLTCSWILDFLSGRSQRVRLGSHISNALCLSTGSPQGCVLSPLLYTLYTYDCVPTHSGNKIIKFADDTTVIGLISGKESEMEYRDEVERLSEWCKDNNLLLNIAKTKELVIDFRKKKSNVEPLIIDKMQVERVSVFKFLGMELEDDLTWSVNTKGLLKKAQQRLYFLRVLRKNHLPKNLLLAFYHCSIESILTYGLCVWFGACTSKEVKALQRVVRSAEKIIDCPLPTLEHIYISRCRKKALGIAHDPTHPGHCLFQLLPSGKRYRALKARTNRLRDSFYPRAIMALNM
>REX1-5_XT_pol#LINE/Rex-Babar 1-3009  [Xenopus tropicalis]
MRFEGVIVFSYVILILITCLAFRVISAQQQGGGSFVFTREQLIALKTAGTRDLILYKILNIPKEIRRRTLRGCRGGRKWRGGVKEEEKRAAYKERMRTYKPYVPSLIMGNVRSLDNKMDELTALVRTENIFRECSLMCFTETWLHSNVPDSNITLDGYSAIRSDRTWRESGKRKGGGLVVYINNMWCNHGHVTVKECVCSPDIELLAVGLRPYYLPREFSQVIITAVYIPPSANAAVACDVIYSVTAKLQTHHPDAFLLISGDFNHTSLTKTIPTFPQYVDCHTRGERSLDLLYANVKGAYGAVALPPLGRSDHNLVHLMPIYKPVVQRQPAIVRSVRKWSEGAIAMLQDCFEATDWEVLSAPYGEDIDGMTDCITEYINFCVDVCVPLRDICCFSNNKPWVTKNIKACLNAKKSAFRSGDREAVKKAQKMLTGKIKEGKESYRRKLEQRLNQNNTREVWRGMRSITGYKTSGQAIEGNVECANDLNTFFNRFDVPLSHTSPGFSRNSHFPAPRSPPTQGTATVSTSVLPVINITVEQVKYGLSKISPTKAVGPDKIIPIVLKSCAPQLCGVLQYLFSLSLSLQRVPALWKTSCIVPVPKIPRPCAQNDFRPVALTSHIMKVFERLILDAFRPLVKFSLDPLQFAYQPFMGVEDAIIHLLHRTYSHLDKPRTTVRMMFFDFSSAFNTIQPAVLGEKLRNINIDIRLVSWIMDYLTCRPQYVRLQNCVSETLICSTGVPQGTVLSPFLFTLYTSDFRYNSESCHLQKFSDDSVVVGCIKEGDTSEYQSVVDDFVSWCECNYLQLNISKTREMVVDFGRSKIHVTPISVKGEIVDMVSDYKYLGVHLDSKLDWSLNTMALYKKGQSRLYFLRRLRSFNVCSIMLRMFYETVVASVIFYAVVCWGGNIKVSDKNKLDKLIKKAGSVLGMELDSVDAIAKRRILCKVQSIVNNPSHPLYSVFAEQKSSFSQRLITFRCSTERHRRSFLPTAIKIYNSSLSVFHTHI
>REX1-6_XT_pol#LINE/Rex-Babar 115-2979 via tfasty with CR1-40_DR_pol, 1 stopcodon. [Xenopus tropicalis]
MEYIRYDRDTLVSIGIQCTHNSLFSTPDPGWPSEILRENKRRDAKRRPRGKRAGIRNRLRARAHRTPLPSILLANVQSMENKLDDLRARIKFQRDIRDCNLLCFTETWLNPAVPDHAIQPAEFFSVHRMDRTRDSGKSRGGGVCLMVNNSWCNSASVVPLTRSCTPNLELLSIMCRPFYLPREFTSVIISAVYIPPQADTDTALCELHEALTQYQTQYRDAVLIVAGDFNSANLKRAAPNFHQHITCPTRGERTLDHCYTMVKDGYKAQSCPPFGKSDHATIFLMPKYKQRLKQEVPVQREVVRWTDQSMAALQDALDDADWDMFRNSSDDVSVFTEAVVxFIRKLVDDTVEKKTIRTFPNQKPWVDKTIRDALRSRTAAYNVGLASGDMDQYKAASYNVRKAVKEAKQRYGRKLESQLQQSDSRSLWQGLRIITDYKTPTTAKTGRLNTDATLADELNTFYARFESEAKDANASGASCRQENTAGTGSMFIISEHDVRRAFKRVNTRKAAGPDGISGRILRACADQLAPVFTEIFNISLSQSVIPTCFKESIIVPVPKKPLPASLNDYRPVALTSVVMKCFERLVRDFIISSLPDTLDPLQFAYRTNRSTDDAISHLLHTSLTHLDTRRGNYVKMLFIDYSSAFNTIIPSTLTTKLEHLGLSSSMCQWISNFLTDRPQAVRMGGHVSASLSLSTGAPQGCVLSPLLYSLYTFDCKATTNSTAVIKFADDTVVVGLITNNDETAYLEEIGNLENWCQRNNLLLNVSKTKELVVDFSTKQERNYQTPIINRCPVERVDSFRYLGVHITQDLAWSCHINTVVKKARQRLYHLRRLRDFRLPSKVLRNFYSCTIESILTGNIMTWFGNSTMQDRRALQRVVRSAERIIRTELPDLHSIYIKRCWTKARKIVKDLSHPNNGLFTLLRSGKRFRSLKANTERMRRSFFPQAIRSLNHTTM
>REX1-7_XT_pol#LINE/Rex-Babar 16-2773 via tfasty with CR1-31_DR_pol, 3 frameshifts and 2 stopcodons. [Xenopus tropicalis]
MNPASSPSVLPDAAGRKWRHRKRCERKRKRVGGGGSLxQAKNxPQPASTPAIILSNVSSLENKLDYIRLQQSTQREFRDCCFVFTETWLNDKVPDAAIQLDGLASFRADRNTVYATGGGGLCLFINTKWCKNSVLVYNFCSPLLEIATVRCRPFYLPREFTTVFIIGVYIPPSANTKEALGELYARISILQNIHPEGLFIVAGDFNHANLKSVLPKFHQYVDFATRGENMLDLVYTNISGAYRAEPRPHLGYSDHISVMLIPAYRPLVRRSKPVLKQVKIWPAGAISALQDCFENTDWNMFREAATYGDFTELEEYTSSVISYINKCTEDVIVSKSIISRPNQKPWFTAEVHTLLKTRNSAFRVGDKVALRIARAKLSRAIREAKRAYAQRIHNHFKDSGDTRRMWQGIQAITNYRTSSPACDSDGSLPDVLNSFYARFDMQNDVTARKSTPSPNDQVLCLTTADVRKTLRRVNPRKAAGPDNIPGRVLRGCADQLTDVLTDIFNTSLSSAVVPTCFKSSIIVPVPKKSSVSCLNDYRPVALTSIIMKCFERLVMRHIKSMLPPTLDPLQFAYRSNRSTDDAISTTLHLALTHLDKKDTYVRMLYIDFSSAFNTIIPQHLIGKLSLLGLNTSLCNWILDFLTERPQAVRIGNHTSNTTTLSTGAPQGCVLSPLLFTLLTHDCVATHSSNHIIKFADDTTVVGLISKNDESAYREEVRRLTSWCKDNNLSLNVDKTKEMVVDFRRTRSVHSPLSIDGSSVEMVKSITFLGVHLEENLTWSLNSSSLHKKAQQRLFFLRRLRKAQLPPTILTTFYRGTIESILCSCITVWFGNCAISDRKSLQRIVRTAEKIIGVSLPSIDDIYTMRCIRKAPSIVSDRSHPSHSFRALTSRLCNSFYPQAIRLLNSMDWSHTKIITSGLN
>REX1-9_XT_pol#LINE/Rex-Babar 1-2703  [Xenopus tropicalis]
EVPLSWIPGTRKRRRRGRRSGILARLRRRCNRPPLPSLLLANVQSLENKLCELRARISFQREMRDCCLTETWLSDKIPDSAIQLTGFSVHRADRSRELTGKSKGGGVCFMINNSWCDHANVHPIKSFCSQDLEFLMLMCRPFWLPREFSAVIITAVYIPPLADIDRAHGELYSAISSQETSHPEAMFITTGDFNKANLRKVLPKLHQHIQFNTRGERLLDHCYTSFRNAYKALPRAPFGQSDHRSILLLPAYRQKLKQVAPTLREVHCWSDQSDSMLQDCFDHVDWEMFRTAAVSIDEYADSVCGFIRKCVDDVVPSKIVKIYPNQKPWINSDVRMALAARNSAFASANTSEYKHATYQLRKIIKSVKCEYRDKVEQQFDDPRRMWQGLNTIADFRGKTSTPQTTASLCEDLNVFYARFDTTNTTRLVSDRSMNDVSAHTVSEEEVRKCFRQVNARKAAGPDGIPGRVLKTCAAQLAGVFMNIFNLSLSLSVVPACFKTATIIPVPKYSTIKSLNDWRPVALTPIVSKCFERLVRNFICSALPDSLDPLQFAYRHNRSTDDAIALTLHTALTHLEKKDTYVRMLLVDYSSAFNTIVPSKLDRKLQDLGLSNSLCSWILNFLSDRRQMVRLGNITSSSVIMNTGAPQGCVLSPLLYSLYTYDCTATSSSNIVVKFADDTTVVGLITNGDETAYREEVNALTHWCQENHLSLNVGKTKELIVDFRRCRGAHSPIIINGAAVERVNSFRFLGVHIADDLTWSVHIDKTVKKAQQRLFFLRRLKRFGMSPRILRSFYRCAIESILTGSITTWYGNSTVYNRKALQRVVRCAERIIGGELPSLHDIYRKRCLRKARRIIKDSSHPSNKLFKLLPSGRRYGSIQSRTSRLRDSFYHQAIRLLNTDQ
>Rex1-1_PM_pol#LINE/Rex-Babar 2-2944  [Petromyzon marinus]
MAAHTVAAAQCLPGRCLVWLFMYALCLVLCTFCRASNTFSRHDLLKIGLCYERSVTSEFLRLHKIPVELARSPGSPWIIIPAGRRRRRRRERRQKRGCRAGALARLRRQPLKPPLPSLFLTNARSLANKMDELRLQTTANNVVKDSCILLFTETWLHSSIPDSAIELAGYTAQRHDRTVDSGKSRGGGLCVYVNNSWCTNTVTVDSHCSPDLEYVTVKCRPIYLPREFTVVMITAVYIPPDANANSAIGLLHGSISIQQSKYPDAVQIIAGDFNHADLKAALPKFHQHVKCATRGTKTLDKVYTNIKLGYRARPLPHLGQSDHLSLLLIPAYAPIKKTAPTITKTVATWPEGATQQLQDCFDRTNWGVFEHQDLEVFTDSVLCYIKNCIDTVTVDKRIRVYPNQKPWMTREVQQLLKERNIAFKSRDKALYSTARANLKRGIREAKADYRRRIEERLDSNDSRQVWQGVQHLTNYRANLGAADGDTALAEELNLFFARFEVTPPGTASPNPTVHSSLNLTVEEHEVRRTLRAVNPRKAAGPDGVPGRVLRDCADELAGVFTRIFNLSLEQSTVPPCLKSSTIVPLPKKTHISSLNDYRPVALTPVVMKCFEKLVRSHIIATLPRSLDPHQFAYRANRSTEDAVATALHAALSHLEQQGSYVRMLFVDYSSAFNTILPHKLVVKLGDLGLPHSTCMWIHSFLSGRRQRVRVGRHTSTALSLSTGSPQGCVLSPLLYSLYTHDCAPVHHSNTIVKFADDTTVVGLISGGDESAYRDEVERLTAWCRGNNLLLNTAKTKELIIDYRRKKTDTPPLTINGDCVERVADFRFLGVHIGEGLTWSANTSELLKKAQQRLYFLRILRKNNITQKLLVSFYRASIESILTYCICVWYTSCTVAQRKALQRVINTAQKIAGCPLPTLEELHSSRCIKKAQNIIKDSSHPGHSLFELLPSGRRFRSVKTRTNRFKHSFYPTAITTLNTAN
>Rex1-2_PM_pol#LINE/Rex-Babar 61-2820  [Petromyzon marinus]
EDGADDGSLSRSARPVLSCFVCQFSVLPIFSEFPNRDELLXIRETTPVDLFXTFLLPAAELVGISSQXRARLCSSSERRPRGKRSGALVRLRRRGIRTVLPSFFLSNVRSLCNKMDELQLLMVKNRDFLSSSVLCFTETWLCDLIPDTALQLAGFHLVRSDRDIALSGKTKGGGICFYINSGWCVDVTVILQHCSPLLESFFINCKPFYSPREFASLILVGVYLPPXPQVKEAQRMLADQILSVERANPDSLVIVLGDFNKGNLSHELPKYIQFIKCPTREGNTLDHCYTTVSRAYHAVPRAALGHSDHAMVHLIPAYRQKLKLCKPAVRTSKQWTSEAVEDLRACLDCTDWDMFTTATNSLDELTEAVTSYISFCEDCCIPTRTRVNFNNNKPWFSAKLRRLRLEKEEAFRSGDRDRFKESKNRFSKAVREAKRLYSERLKHQFSALSVWRGLRQITNYKPRAPHTTNDSRLANDLNEFSPATLRHCADQLSPVFTNIFNTSLETCHVPACLKSSTIIPVPKKLRPTGLNDYRPVALTSVVMKSFERLVLAHLKAITDPLLDPLQFAYRANRSVDDAVNMALHFTLQHLDSPASYARILFVDFSSAFNTIIPALLQDKLFQLNVPDSTCRWITDFLSDRKQCVKLGTQVSDSRSISTGTPQGCVLSPLLFSLYTNSCTSNHLSVKLLKFADDTTLIGLISGGDESDYRWEADNLVTWCSQNNLELNALKTVEMVVDFRKNTAPLTPITLCDSPVKTVESFRFLGTILSRDLKWELNISSLTKRAQQRMYFLRQLKKFNLPKTMMVXFYTAIIESILTSSITVWYAAATAKDKSRLQRIIHTAEKVIACNLPTLEDLHTXRTMRRARKIVADSSHPGHSLFQLLPSGRRLRSIRTKTSRHKNSFFPSAAGLLNKAKGLH
>Rex1-21_NV_pol#LINE/Rex-Babar 2-746 Fragment, via tfasty with CR1-13_NV_pol, 1 frameshift. [Nematostella vectensis]
ANWPCRVKYVDNTTIFEIIPRCSPSYLQFIVDELSEFASSRGMRLNPKKCRELTINFLQFKPTELAPLFLNGSQVKQSVDYKMLGVHISSDLSWNIHVENIIKKANKRLYALRLLRKAGVDSNDLIKIYTSXIRSVLEYAAPAWASLPIYLQDALEGIQKRALRCIYAEYDLLFQILLCRAGIATLDERRKLLCQTFISKATSSEPLKSVIPSRSAVSHCYTLRSGSVWAIRRSGRTDRFNNFITNRF
>Rex1-23_NV_pol#LINE/Rex-Babar 144-3194  [Nematostella vectensis]
MALFYTREALKAVFTSAKAKPLSRNLWDTLNGLQISRFRPTRRSKRAGQRKQRPTSVSTSRREGSAVPGLAEMHSVPDISNLNEGINLHTPNQNLLNIQCDTQPSDKNNIGETETGPTRRHLRAKVPNVIVSNVMSLAPKIDEVKEFVLRKEADLVFITETWLKESVSDGVINIPDFSVVRRDRMEQMHGGVCAYIKDGCRFQHLKELNCCEDHESLWLHLRPNRLPRGFHCIIAAAIYHPPSADDQSLREHLFQSLALVESKFPNSGILLTGDFNRLDVSGLLRHFRLKQIVKVPTRKDATLDLILTNMHDHYAAPQAFPPFGLSDHNTVLAAAIDKKQNNNRKKTIIKRDLRTSSKAALGRYLISIDWSLLFAPLSDCDQMWNTFIEVVSTGLDIIMPEKEYHICAADAPWMTPGLKSIILKRQEAFKNHGPESVQFKFFRNMVNRERKVCRSRFYDSKVKQLKGENPKKWWDEVKRLCGAKVTNGDLTTQINIENFSELPMQDQANRINSAFLEPLEVYRLNEPLERFPLEDEPVFLSVTEDRVQKVLSKLHPRKASGPDNVPSWLLKEFSDIMAQPITQILNASFKDQRLPPIWKMADVPPLPKTKPVLDLKKDLRPISLTPCVSKVAEEFVVTDFVKPAVLEVIGQDQYGAIPKSSTTMALISMLHAWALGTDGNGATVRTLLFDYRKAFDFIDHSILVDKLSRLAIPRSVVNWIIDFLSNRFQRIKLAKGCYSEWGPVPSGVPQGTKLGPWLFVLFINDLECNSPHLWKYVDDTTVSEVVLKGELSSAQGLVNDIIEWSHDNRVVLNPDKCKEMRISFARSPRPFDAITIEGKELEVVKSTKLLGLTISDNLSWNAHVNEVVKKSSKKLYFLIQLKRARLPPSDLSLFYKACIRSAVDYAVPVFHNALPQYLKNELVRIEKRALSIILPRTSYDGACDLLGITPLEVHHGLICSKLFDEIVSDPNHKLKSLLPPSNVSSHNLRKKRPFALPRLKTNRAMNSFTFSMANKS
>Rex1_FurC_pol#LINE/Rex-Babar 36-3143 [Takifugu]
QLPTLNCSFLNFRSVCYTCLHSFLFGIYFLSFHLQLEYSDTMFWRLEYFFLCFAVLGLFAAPISCAEKRTGIVYTRDQLMALRPPSFVVGEKPQIPKELRRKRRGSKAGVKQRMKRRRFKPCVPAVITGNVRSLANKMDELEALTRTQREYREASIMCFTETWLHGLIPDSNVTIAGFSTVRADRDTTAAGKKKGGGLAVFISNRWCNPEYIHVKERVCSPDVELIAIGLRPYYLPREFTNVIAITVYIPPTGKANTACDVIHSVTADLQTKHPGAFILITGDFNHASLKSTLPTFHQYVQCSRRDRKTLDLLYANVTSAYTSTALPPLGKSDHNLVLLSPSYTPVVQQQPVTVRTVXKWSDGAMDCLRDALETTNWSALCEPHGEDLDGLTDCVSDYIKFCTENSVPTKKVRCYPNNKPWVTSDLKALLNKKKRAFTAGDPAELRSVQKELKRSLKESKDAYRKKLEERLERNQTRDVWSGMRTITGFQKKGIRSADGNVDQANELNQFFNRFDSSSPSPSCPNIPLDNNGSPSHLPEPLTPLPTSSPSPLLTPYIDXNMSPIPPTGLSFTSSQVRRELERLNQRKAAGPDGISPRVLKNCSRQLCGILQHLFNQSLHLQRIPVLWKTSCLVPVPKKTHPVAPSDYRPIALTSHIMKVMERLVLXHLRPLVSPFQDPLQFAYQPKVGVDDAVIYLLQRAYSSLDRLNTTVRVMFFDFSSAFNTIQPRLLRAKLENMQMDAPLVSWIEDYLTGRPQFVRLRSCVSDPLMSNTGAPQGTVLSPFLFTTYTADFQYHSETCHLQKYSDDTVIVGCVENGQEDEYRDLVESFVRWSRENLLQLNVTKTKEMVVDFSKSKSPPSPVCISGKDVEIVPSYRFLGVQLDNKLEWSTNTDAVYKKAMSRLYFLRRLRSFSVCSRMLHMFYQSVMASTIFFAVVCWGAGIKAKDANRLNKLIKKAGSVVGCRLANLDEVVRDRMVLKLRTIMDNPSHPLHNTVDKLRSSFSNRLLQPRCSKERYRKSFLPSAIRLYNSSKPXQ
>Rex1_Xm_pol#LINE/Rex-Babar Translation of AY298859 complement(31588..33414) [Xiphophorus maculatus]
TEINTNESIHTAPSCSNHLPAFSSTPPLLQPPIPPSSPIFTADNNTYPQLTVTTGQDKRQLERLHQGKAAGPDGITTRILKTCSGQLSPVVAHMYNLSLRLERVLLRWKTSHVVPVPKKPRPSDPEDYRPVALKSHVMNVMERLVLALLRPQVRTFLDPLQFAYQPHLGVDDAVIFLLQRALSHLDGGGDTVRITFFDFSSAFNTIQPLLLGEKLRRMGVNDSVISWVTDYLTGRPQFVRLGSVLSDVVVSDVGAPQGTALSPFLFTLYTTDFQYNSESCHLQKFSDDSAVVGCIGDGGEGEYRTLVDGFVEWSEQNHLRLNISKTREMVIDFRRKKIPSRPLKVKGEVVEEVEDYKYLGVVIGNRLDWASNTDAVCRKGMSRLYFLRKLRSFNVCSKMLETFYHSVVAGAIFFAAVCWGSSIRASDSNRLDKIIRKAGSVLGLRLESLETVVERRTLKKVLSVMDNKQPPLHHIVDRQRSTFSHRLLQLRCRRDRYRKSFLKHAISLYNKN
>83584378_Mpi_pol#LINE/Tad1 gi|83584378|gb|ABC24964.1| reverse transcriptase [Monascus pilosus]
MKIIQANVGRGGPSHDLLLSFTADIILVQEPWTKMAKHLTKTHPRYQLFSPTTRWEIRPRTLTYVRKDLPAHALPQPSSPDITAVEVDGLTIINVYRPPNDSVTPSSPTRSIIHTLLQYPVPRNTIIAGDFNTHHPLWQPETQLHALSAGATALVEWLETQGLVLCMEPGTPTRGPNTLDLVFANLPVVATVEDHLSTFSDHKTILAQLKWREPQPQHKLGSTNWEKARELLVPPDADLPTDTLAEELVSRVQLAIQGASEYNTRRLPHTPWWTPELTNLLRQARQHPPDLQPLQKAISKAKANYWKEWIEQATTPTKAFTLAKWQKPSNQLASPPLLVQGNQITTPQGKADAFLTHLLKKGVSLPNQLEEGPPNRPLDPMPLPTKEECWNTLCSPSPSAPGEDSLTTSVWRELWPVIGDAVTALYHQSLEKGLVPQIFKAAKIIMLPKPGKRDLTQLGSWRPISLLSTLGKGLERLIAKWMAVQAIQGKLLTPCHFGALPGRSAIDLVQVLVHRVEKAFQQGKVASLLLMDVKGAFDAVDHQRLLSHLRLQGWDERLLQWIQDWLSSRSACVQIGEANAKAPIKGGLPQGSPLSPILFLLYAAMVVAAYKASFCYADDLRILFVGDSLQETSQQLVETYKAVTALGTEVGLPFSVEKTEIQHFSRKRKHPPPVVRLPDVGEIPPTSYTRWLGVLLDTKLTFKPHINWVFSCGKQLAQHLQRLSNTQRGCPVASMRAAVLQCALPTALYGVEVFYTGQQQVANSLQSLLRIAALAILPAYKTTPTAALLREADLPDPKALLESTLQRAAARYAGLDAKHPIARIYAAPNYGYNTRLTRILQRIPTPAPERRWVEPRLPPLRMLPTHREGHISSPLAISVYSDGSHTGQGAGYGYAIYYGSILVTQGQGPAGPRTEVYDAEIMGAVEGLRAAVGLPCTAYANQLNLFLDNLAAASLLADGRPAPHRRHLTDTFHQLSKQWLSLPYILASPRRPVRVSWVPGHTGIAGNELADRLAKQGAAMDGSHIPPSPAYLRREAKQQLHTATQAAYTRSAPQAYQDLGIRPHTKSSRAQEHKLPRWVLGRLIAARTGHGDFAAYHERFHHTDYLATCSCKKLKTPVHFFFCPHTRKRWKERRKHTLAGPAKTIDWLLGTAAGAEEFSRIVQNTSFFTDICPNWAHLNTE
>CgT1_gag#LINE/Tad1 150-1739 (1 stopcodon) [Glomerella cingulata]
MASQPAAGPSQGPIGLLSSMHNLPKTPPPPTSLPPRPRGLTPPPIQLLGRGRRSATAALQQAREGRALRDEALDLLAKGLDTLIGTAPARLKATAQDLIDSFTRFATAEISGPTPTPSPGKTYAQAVGGSTIGGPLSGPGPGPRPSRTTGWQATNYANKPKRAQDLRLLVRLPAEHIPTSRSLAPHSVKMVVTKELNLQPDLVEVRHTATGFSLKPQNKEIQALLLQRAPEIKNCLTAEKVEVPTKWYQYNIPFCPLYFTSLDGSRVSIESEIEEEVLLRTKQRLLSWRPTRGSLNLATATQSLIIALPQEVKEGFRLFGQSGPARLLPPRKRTPKRHSPGCQGFHSNRFCTRQALCENCSKPLDTHEAGLCLARSKCANCYGPFPSSHTDCPARPLIVNGSLTIPTRKELRGIRKAGEETTKNLSASQTCPLGSTQQANATQGQQPASKRPRPLTPTQDSIVVADTTSVAGSSSSMDEDETEDSEALPLTNRPIRPLPSSSRSQRVAQKPDYNVINAYTHLDLNSEP
>CgT1_pol#LINE/Tad1 1702-3255 N-terminal fragment. Partly in gi|7493944|pir||S72620 probable reverse transcriptase - anthracnose fungus retrotransposon CgT1  (fragment) [Glomerella cingulata]
MPTPTLTSTQSLRFRPASPQALRVAQCNVGKISPAHTALLELCWADQIDIVLIQEPWIGYRDKMQINTHPGYNSYVPVDFWNSRDTRPRVMTYTRKSLRIRIQQQRPSPSRDILWVKAGDLTIINIYRPPGEPINHTTTTLLDYQPPEGTLIAGDLNARHPSWEPGSSSRNRGDDIAEWAEGYNLKFIGEAGAPTHTHGHTLDLTFSNIPFAEAYISAHLHPGADHQAIIIIIPINKSQEQWCQSSHPIVSDSALLRLADLVQMGIPALPTLGDIPTPAEIDSLATQLVSLLSTAIQAVGKRRTNQGSRAPWWTEECSEAHRAVIEARRQQAQEPGLAVPPPILEEQKAFLTTVRKAKRAYWAAKVEEAGTNQNLYQILSWRKSGLAVKAPPLLVDGQAINNSYDKAQALRKAILERFDAADDLPGNPFTVPMVIRRLIPWQHTVSIEEVRQATLTKATTPGIDGITTKLLQSIWGLIATPVQKLFQACVQTGYFPRTFRKAEVVMIQKLGKTDFSK
>I-1_AF_gag#LINE/Tad1 171-1660  [Aspergillus fumigatus]
MARHNNQPGGPLQAALQETTTSATARALEGQKIFSPIAAFLDDHRRQNAGLTPRQLGALTALSNDLANIAQQHFNAYISGVPLTNAPLPLTPAPAPAHGPASFPPSPPPSRPPSGLAQSTYATVTRSPPARNNAATKKTYSNTKTDRLATKLPPPDNRLFVRLPENHLAKSMDAFAIHTSLRSHLGTNGKLLKGVQSIKTGLALLPVSTEALPALEAQKEAIAAFFKDCQIERSSRWISYRVTNVPRKVGRLTGSQYSMIPVNPEILSSEITEAIGLNPVSITETATSAANPNTISSSWFINFPEDSKANLPVRLSLFGMITNAQLLVRKTKIVQCNRCWKWHNARSCARQPRCRLCGSTQHTEEGHSNRCSTQPPHTCPPRCLHCHGPHPADYEQCLLRPSKAGTRCTKAQQAEIRKTSSLELAKARLERQCCMQVPEPSQDQIMAMNSRPSPFPFRTATPPPQEPLDSPPVTARAVRFVSPKPQNSFEVLMNEQX
>I-1_AF_pol#LINE/Tad1 1661-5479 gi|70999918|ref|XP_754676.1| reverse transcriptase, RNaseH [Aspergillus fumigatus]
MKYQNHPRKESIAILQLNVGRIPEAHEIALSQAYSNHIDIILIQEPYIYRDLTRKITKRHPSYECFSPTDSWEISGIPRVLTYIRRKNGIRASQLRPDSISQETLSDLLLLQISSCSGQSALIFNIYNAPAGAKRAGEAARTLTSLLESYFSLPTLLAGDFNLHHHRWQPSLQHAPTTFAESFTEWLDRLGLLLTSEIDIPTHDKGNVLDLAFVSSSPTLIGASTRVAHHLDATSDHRPLLTNLPWEQGPVETPQRLRFDTLDHTRFLTLLASNIANVRSSAENEDELDYLANGITAAIHSSYTASANKSIPQGGGQRWWNTTCKEALQDYRAGLCTQKDFRRVTRRAREQYWRDKISAVTESKEVFDISRWHKSTGSYRSPPLKDPLRPDSPPAVALQEKRDIISRNLLQNTAEAGDIPLDTPAVPSSSLPFPDVTMAQVEKSVLQAGNTTPGADELPTGIIKVAWPLIKDRVLALYQGCLRTGYHPKCFRHAVLAIIQKPNKSNWSSPRSYRPIALLSVLGKGLERLIARNMAWIAIQYRVLASQQFGALPLRSATDLTTSLLHDAEQALNQRLTASLLTFDVKGAFDGVLPGRLIHRLRSQGWPDNLARWVASFVTGRVVQIRIDGEIGPATEILCGLPQGSPVSPILFMLYLAPLFWLGVPKSRFGYADDGAILAISPSIEANCQSLSNSLQEALDWAATEGITFAPDKYELIHFSRRKADQDPSHTPSIVAGPVTVSENTTRPYLRWLGVLFDKKLSFKYHVRETTSKALTVANALRGLGNTVRGIKPYLMRQAVIACVLRKAYFGAETWWPGRSRPCPRAGSISNQVQGQLDKIAKVIQTGARAILPIYRTTPLPALYRESGLLPAEIELDHIATSAAIRVRRLDPYHPLRRRAAKIAQTGWATSRFARRVLALPESEQINPLQYPPWLPREARADAQLRIKAPNGLSKEQAATNFQDFYSSLPNTDMKVFTDGSKLPNGMAGAGFALYQTGRLCLQSSFSLGLNKELFDAEAEAALAGIKAAMQYHTARFATNLWVCLDNLEVATRLLSPFAGSSQEIFETVRTLASTWLERERFPYTDGGSVRICWVPGHAKVPGNEAADQAAKEGAALEPPISQKHSFASLKRQTKAAMISGLQKHWQAVAPQPYQDLCITSSPRCPDELRLPRHLLGRILAARTGHGDFADYHERFNHEDAHLHCRCGARKSPVHFFFCRIVKRRLPQPLGPPSEMIPFLLGTAKGAAKLAAWLSQTRFFDDICPRRPLPEHA
>I-1_AN_gag#LINE/Tad1 103-1584  [Emericella nidulans]
MEVDISPPGGTRPATPLLGENSDPPSGPTTPTPLPRNSLKRRALFSPQKTPTAAPVPVSHTPQAPSICEQVGMVADDQLALLHDWKLAMTSLAKALDLTVSSLQGRPRDLARELAARFVTLAKQDSPQQISQMPVVAPPQPPRQMEQPNHPPTPEASKSPLNRQTSQPTTWASLTAPRTGQGNWQTIAPEHHMQAKQTAQRRLKQSNKTDHRIFLRLPASSSLRAIGPHGIRVTLAGKVPDGITQVQVISTGYAITTTEQGKAFLLSEKAASLAGDGYFEIPTEYHQVIVSRIPKQLWSLDGWIDTTIADISMEAERITGIKPLMAKLSKHPVERDSITAVIAFPKKLQHPLQLFGLSGLSRPTRPKQRPLQCTRCHRFYDTRACRSSERCISCGSSKQEHNCRVQCINCCGPHAADFQKYPARPHIQRNTITRLSKDALAAICKAGRLAFQQEQKKAEESSKQQTDNTHTTNQPTRQLTQELLNQTLTSPEL
>I-1_AN_pol#LINE/Tad1 1581-5141 Forms group with CGT1 and MGR583  [Emericella nidulans]
MKILQANIGRGGAVYDLLLSFEADIILVQEPWTNTAKHLTKTHPQYQLFSPPTRWTARPRTLTYVQRDLPAHSLPEPISPDITTIYTAGLTIINVYRPPNNPVAPAGAGSTPSTLSTLLGYAPPENTILAGDFNTRHPFWQPDTESHAVTPGATGLLDWLDAHELELRLEPGTPTRGPNTLDLVFSNLPLRALVEDHLKTPSDHATIGIILEQEEPPPIYKLGSTNWEKARALASPPDPTLPIDLLAKQLVQISQLAIQGASRYNTRRLPRTPWWTPELTDILHQTRQQQNPDYKQLRKAIVQAKAEYWKQRIEQATAPIDAFKLAKWIQYPDQLAAPPLNIQGAQVTTPQGKADAFLNHLLEKGALLPNQTEEGPPNKPLGLLHLPTKEHCWAALCAPPPSAPGEDGLATTAWRELWPVLGDTITQLYYRCMEEGCFPLSLKSAKVIMLPKPGKRGYTQLNAWRPISLLSTLGKGLERLLAQQIAVRAIQADVLAPCHFRALPGRSAIDLVQVLVHRVEEAFQQGKDASLLLLDVKGAFDAVIHQQLLSHLRLQGWHKGLLQLLKDWLTGRSVSVHIKEGTATAPIKGRLPQGSPLSPILFLLYAARIVSTLEGSFCYADDMGILLTGNTLEESSQQLVEAYKQITALGTETGLPFSIEKTEIQYFSRKQQQHLPTVTLPGIGEITPSLYTQWLGVLLDTKLTFKAHINLVFSRGKRLAQHLKRLSNTQHSCPVASMQAAVIQYILPTALYRAEVFYTGKRQKGVVNSLLSLFCTAALAIIPAYKTTPTAALLREADLPDPEALLNSILQRAAVRYMSLDTKHPIAQIAAETTAGRPKTRLKRILQLLLSPLPERAIIELPLPPLCMLPTDNKGYSPAPLQISVYSDGSRTSQGAGYGYAIYFGPILVTKGHGPAGPRTEVYDAEIMGAVEGLRAALGQPCVGYSTQLVILLDNLAAASLLASYRPTPHRHGLSETFSQLAAQWMESPSILTMQRKPLQVRWIPGHSGIAGNELADKLAKLGSSIYSPDIPPSPAYLQREAKQWLRTETYTAYANKAPETYKALNIRPHTKESRSREHKLPWWVLGRLVAARTGHGDFTAYHQRFNHSDYLESCSCGRTKTPVHFFFCPYTRKRWKDRWRCIRDGPSKTIDWLLSTAAGAEEFSRIVQESSFFKDICPNWARRSA
>MARY2N_pol#LINE/Tad1 gi|12862434|dbj|BAB32470.1| Pol-like protein Pol-2 [Tricholoma matsutake]
MSWTRQRNLPSYEAISYRGEPCNDLDSLWDALDGSYNAASDRVVDLSILDELDPAPERAWIPFSVMELKEALNACSSRSAPGPDHVTWLHLKHWCSNPEVAGLITRIAEACITAGHWPAHFKESLSVIIPKPGKPNYSTPKSFRPIVLLNTLGKLVEKMLSRRLQFDGVAHEAFEQNQFGGVAQRSTEDAGIYLTHLVRAGWAKGLKTSVVAFDITQFFPSLNHQVLLEIISRSGFPAQVVNFFRSYLVGRKMTYKWNAFSSGPFTADVGVGQGSALSPVLSALYLTPIMKLFRRSDIGRDVDLMSYVDDGTLIARSPQLEDNIPLLKTAYGWIFQAFTSLGLVLKHNKSEIFHFSRARRFTPLPIDLGFAPYTGNTPLKPKVTWRYLGFFFDRKLSFKEHTRFYSTKALTTARAMGMLGNSVRGLTPMQKRLLYRSCVVPIMPYGLRLWHFKGARVKGVIKTLAQVQSIAACWILGAFRTTPIGGLESIAGLLPMQLLLRRLVDRGVFRTSLLAPSHPLRAILGPNHVGTTHSHELGLWGGNVLDTLTLQGPSVVSAAALALVPGDEFDPFFFFFFFGSEFITRGSNAVCGAGYKLGYYFIYAFPSPISHSGPRFSHFRQAVPQTLASQPGKAIIWRGRPPLPKLAIRSPPGANGPPATCPTEARPGAAVLIHRKSPLVGGITVCVFPANED
>MGR583_gag#LINE/Tad1 110-1822 [Magnaporthe grisea]
MASPEVSNRRARPQSTPHGLPQGQAESGHVSLDTRTANAPQPAGRGRYSTVPALAIKTLQQELENVETVGSWLEEVFAAKLESLQAPEDAALRRIVLELDDVISGWFLSRTLPEKERSRSPSGSPTSSSERRSILITRTGTASSASKGRGTPTNKSVTWAERAATPPAAAPTRILTPATRSYPIRTTPGNAPDSSATPSQSGRDRSQAPKRLTEQPSNRILIRVNDKLRMVTREPYAVTTKLAELVSVPHSEIPNAKRTPTGWGVTVASEETRQKLLNPSAVKAIMDALDAREVTVPTTWHTYAVSGVPRTLNCLDGRKDVHEVIQEEITVAAGQQPVNWHISKHGYDPHTAEGTWIVSFLQPVKPFQLFGVSKRARKVEKSRKITHHHDGCQGYCEIRRCVRQARCGICGEAKHATEEEPCKAAPKCVNCHGHFPSGHENCPARPLVVNGKLERPSQRKLKGIRRIGRANRAAIINDRAETARREPAPAIPVLSTSSQHSQTSSSRSSISNKRARPCEAAGADIRNFLQVEQERVHDEIVWAAEMEEDAAAAEPCPADGIDLEATRRLI
>MGR583_pol#LINE/Tad1 1819-5706 gi|2454622|gb|AAB71689.1|   reverse transcriptase  [Magnaporthe grisea]
MTKYSLGNMQRECLDVVWANVGKRMGVHLSLLELCHQRKVDLVNVQEPWCGLNTTTQTHPGYDVFAPVDEWHANTYEAMTGLRPRVLTYVKKGAALRAAQRRLPQGQNTRDILWLEINGILFVNVYRAPGTEAALEMVCNTVPNGPTVLGGDFNVAAAAYQPGRANARGGDQLTAWAQAQGMSFTGNIGVPTHRDGGLLDMVFSNLPSTITVVDSSLYTGSDHESLYTTLRTRGAPRPEAINVSVRDDRLPKFAELLAFGMQDMPDPGSAADAYALDAWVAEFTTLWEQVTWVVGTPAGKRDSSAPWWTENCQRVWSEFQRVKRSAVNRADASAEEKAYTKGVRAAKREYWRHRIDQLRDDKDLWNMVGWLGAGPRLRSPPLVINGEQVSEPLAKAEALQREVLGRFSAEDDLQGDPLEAWSPDEAKIPWDTQVSAEEAERSCIGVTSTSPGIDGITVRLLKAGWASLAEPVRRLYQRCLELGHFPAPWKKAEVAMLPKTGKKDRSSVRSWRPIALLSCIGKGLERLVARRIAWAIHDNGLLSCTHGGALPKRSATDLVCALAHDIEQALARGEEVTLVACDVQGAFDALLHGRLIRKMRSLGFSKMLLRFVINFLSGRQARVRLEGTTTGFRRLGCGTPQGSPLSPILYMLYLAYLVKNGTKWRLAYADDVLTWKSSPSLEENVRWLEDKLRDMHEIAAEEKIHFAAEKTEVIHITKKRHGRNPEIRINGRTVTPVQLPGGRRGQSASGAERYPGMRWLGFWFSRRLDGRRHVAERAAKAMAVAAHLKSFGAVRYGPPAAALRKAAVACVGSSATYAAEAWYNPAHKQRGLLKALNKPLVLAARAILPAYKTTPSSTVLRDAGLPSARVALAYTRLKYGARLRLADKGHPLVSRLRETPRARNSGHSATTLQTAAQLLPRIRRLELRAPRNAPDSRTDPTGGVPKEEAARRFIEWLDMVSPDDIVVYTDGSEKHENNCVQIGYGWAAFRAGLEFAARAASITPESHVFDAEAIGALKGLQAAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLEFHNLVDLLRKQSTEVRVRWCPGHQGIPGNDRADELAKAGSAGPPDPDPRAQQTTYSGAGTVLRAILSNIEKDWWRKELCERSPAYREWKFQYTPRKEPEELRLPRPLLGHYLAMRTGHGDFKAYHDRFNHQDANTSCAWCWKRTSPEHPVHCRFSRAVWRNWPWPDNDRPVGPPDRAQRRKFFQTSLGQPKSFEAFSIATNYFSARPRAARQRPARHERTLRLGTPIVNDSNSDEE
>Mars1_pol#LINE/Tad1 gi|1435079|emb|CAA67543.1| reverse transcriptase [Ascobolus immersus]
EFFDKYLADTGSNILFDVLKMTRPKRSHLIPTLHTETSVAVKFGEKAALFRKTLFPPPPAYAPSMTPPLQPSYEWVPVTDDEIKAILFACSPKKAPGPDGVNFACLRHAYTALPSWFNMLYRTVLNLGYHPRSWREATGAIVPKPKKADYTAVKSYRIVSLLNCMGKVAEKLVAFRLAQLCEDKSLLHTGQMGGRKHRSSQDAVMALVHDIELGWSRGLTSSALLLDVKGAFDNVSKVRLLESSGMRIPKPLVEWVSSFMSDRLIALAFDGSKEELQPVNTGIPQGSPCSPILFLIYLKPLFNELERHKLNIQTPSYIDDVAIMLTGKSTVKNAATLQKAAVIAFEWARGNAIAFDDSKSELIHFANTNKVPTCPMVLPNGTELRPLPSVRWLGILLDRKLSFRPHVENRIAAAGRALSSLLRLSTTEKGLTLSNMRQLYQACILPVIDFGSEVWWKGYNQDYLVKRIQLVQNTASRRILGAFRTTPTDLLDVEAALFPASIRLQYNQRRYAVRLLRLPESHPVVQRCPELFHPTADGITDKELGGAPWHATERTKWRYPSRLIRVAHSIHHLLLNGDTEELSAPETGTFPANLELSALPTAPIRPGYLPVPYTPPTSKSEAAVAHLELLTTLNPRKHLVFYSDGSKLDNKIGAGVYLRPSRAIPAESHSFSLGSTSEVFDAELQACYYACVRAKALARRNRTITDCWVFLDNTSVIHRLRHTSPTAGQALAIGVHEVRTPLTTWE
>Tad1_NC_gag#LINE/Tad1 gi|551304|gb|AAA21791.1| gag-like protein  (this really is Tad3, but sequences are almost identical) [Neurospora crassa]
MSCDERSDGVVSSLPMAIDGGARGLENSVHNPLAEISACNDPEAALTAKTSDKTEEDDETLKKFIARANKSTDYDTVSTEDRRWARELLLEFAKARVGKSGSTRPEADKAGTDQFVTRKDFDDLKKDILKEIKKGAQEAPKRWADVVAKASPSKIGATLQQPPTTTKKFVPSNLERQLTIKGATIAAEFVNRSNEDTKTTLATCLGKKKPGLVVRAATRMPTTGDYVIVFDEPTRTWCWRNQAWAKEVFGPDAFITMSTVGVLVRGVPWDSVDNYTTAEAISNVAKERNPEASIIRVRPWKRRDGESRGLLLVEVATASAACFLQDNLFLWDGGAYPCEPFQASSNVQQCFRCWGIGHTARFCRQDDICARCGEAKHEGDRFGEVNCPSNDDKSLVYCKPCGKKGHCAYNRKECPILRKAIAKASVAHAERPRAFAPARTQPERCWSRRQRLWTRVSCQTPPPAPVLLLPWRDMLEEAQRGDGRER
>Tad1_NC_pol#LINE/Tad1 gi|409764|gb|AAA21792.1| contains reverse transcriptase and cys finger domains; ORF2  (this really is Tad3, but sequences are almost identical) [Neurospora crassa]
MVQLKILYWNVGKSYERGKLLLEQEETYDIVAIQEPGRNLNGDIYRPRGGRYFGVDCSEKGRAVIYVNKKWNLKDLDFQAGKDWTAVTFKNLRDPTTVYSIYSPILTQGTPEHQWGSPLLEFIEAGPPAGNLVAVGDLNLHHPDWDLENRTSPGAARLLTWARRWRLSLLTPRGEPTRLGNATRGERDGTIDHAWLSPGVEAEYWGAQRCEQTGSDHCPQEIWVQVGRKNKKAEEEGGYSWSLMDTEKVKEASEKRISVPERIDTVEDLELAFRRLDGELTSIAEEFVPHRKKGRGRRANWWTLECKTATKEARRTYWEWFGCRTASNWREFVEATMKKKRIIAKAQQATWRDGVAEASKNPSRLWPLERWARTRSHRPADPPKLPALQTQEGAAEIGDHSGKAEILADRFFPKVEVPTDHLPDWTEPPEGVDPIVISELVDEEDVQDVLSRMAPNKAPGIDWYSNRFLKLCGQPFRQAMACLASASLRLGHFPQRFKDAKVVVLKKPGKSAAQQKLAGAWRPISLLSNVGKILEALVAKRLTQAAEEFNLLPEGQMGNRAGRSTEFAVRVVTDAVHTAWKLGAVTSLMLLDLKGAFDRVNHRWLLHTLWEMQLPTWIIRWVASFVAGRRGSLFFDDETSRPYAITAGVPQGSPLSPILFILFITPLYRKLATIPNTITVGFADDTNVVAVARTTEENCRTLQAAWEVCSEWAGARGMEFEATKTELMHFTRTRAPRTETLQLGDTVLQPTESTRFLGVWLDRKLNYRAHAEAVKQKMTTQTNALTRLAAKTWGCSFARAREIYTKCIRSAIAYGASAFHQPTEVYGKPRGIVIGLAKYQTKCLRVVAGAYKATPVRNLETETFCPPLDLYLNKRVRAFEERLARTDQARFVRGTAAWVASCVQARRARGRPPADKPESGAAKARWAEAWAPTEKLLAMAAGPPPESGTPPPASQIPEPTAADREEWLEDATNREWVSRYNHHLAAAVAKSGQRYEFTIADLNPKFSGEAIQRHMVGTKKKKGRRRKPEEEEDEPYPLTKAKSSLLVQARTEVIGLRAFLHRRKVPDVLTPICACGLEKETFAHIVLNCLDAETLFWSDPDSWPLSKEELQEYLDDGVKAERILSWALRLGRLKEYRLAVELEEDQREELARHS
>70989994_Afu_pol#LINE/Tad1? gi|70989994|ref|XP_749846.1| reverse transcriptase RNaseH [Aspergillus fumigatus Af293]
MRSTNLRLLQLNIMKSRAGMEALINDHQTQNLDVLLIQEPPVTAYRTHVNDSAWRLYRPTYTDDSARLRSLLYINRRISTASHRQILCDHPDVTAVKIWTPTVQYLLFSVYIQPVAIYQPADVTTAQLILEEIQSSIQQHSIGIDKVTKLIISGDFNRHHPAWSHQPVHHTFAEHAEELINFFQMHELQWCLPQGTPTFWSMSDPGKASILDLTVTNDPARLIKCHLYHDHYGSDHRGTLSEWNLQPERNVGRKPKRAYDKADWAKIGQRILEVMGPLPKIHSTADIDRAVERLVESTSIIINQDVPAQKPSPYAKRWFTSELKTQQIEVNRARRRWQDSCATLGITHLTTAALFQDMRQKRREWTRTVEKAKTTHWKQFLDEAKEGQLWKAATYMRPRESYASIPSLKTKPRHSEKPFFPKMAEPEEGNIAPAPAEILWEPITKEEIYRSLKAAKGTTAPGEDGIPTLVWKHLWKYLQTAITHIFAKSVELAYYPRRWKQARIVVLRKPGKPDYTVPGAYRPISLLNTLGKVLEAVMAQRLSFWAETYKLLPETQFRGRPGHNTEEALLVLTNAVDRAWSRSKVVTLVAFDLKGAFNGVNKTSLDTRLRAKGIPTTARLWIRSFMEDRHASINFDDFQTEVTLLENAGLAQGSPLSPILFGFFNSDLVDQPVDYHGGASAFIDDYFRWRVGTSAKENLKTIQEEDIPRIKAWARRTGSSFAAEKTELIHLTRSRKEQATGQIIMNGKVIKPSDSAKLLGVIFDKELRWKEHVQQAIKQATKVNIALGGLRHLRPEQMRQLYQACVTPVVDYASTVWHNPLRDRTHLRLLGTVQRTALLRVLSAFRTVSTPALEVESYMLPTRLRLKQRGQIVTASLSMLPESHPVHGVIKRARTRSTHIGTGSRFPLAETMRTMDLARLRALEKINPTPLAPWRTPAFTEIDIEPDREKAKENTAARQKAAGVTVFSDASGQQNHLGAAAVALDQDGNIIQSRQICVGSMEHWSVYAAELMAIYYAISLVYQISQKKQEALGTGREPATILTDSMSALQAIANSWNKSGQRIIQAILQSARELNTRGIPLRLQWVPGHCDDPGNDTADRLAKEAVGPDKLHPFQHLLSREKGYIRRKIREEWGQEWRASKKGGHLRQIDATLPSIRTRRMYGSLPRSRAYILTQLRTGHSWLATHGKRYGLQESDKCECRAKETVVHVLVDCPRLKDLRNILRRKIGSGFNNISDMLGGKMQGKEGRLNEAEHDGSILGAVLDFAEASERFRSRGPERPQNRTTGT
>70990008_Afu_pol#LINE/Tad1? gi|70990008|ref|XP_749853.1| reverse transcriptase AA 360-end  [Aspergillus fumigatus Af293]
MKSGPGMEALINDHQSQDLDVLLIQELSITSYQTHVNHSAWRLYRPTVASDEIRPRSLIYVNRKLSTSSHRQIRCDHPDITAIKIWTPDTQILLFSVYIPCVPLHAPDEATAEPTLTAIQNTISAARYIDQKPTTIILSGDFNRHHLMWGGNHIQARFIEDASELIAFFQDHNLHSCLPRGTATFWPLNNPGKSTTIDQTVSDRPDLLIRCHLYHDNYGSDHRATYSEWSLKARHGPIAKARKAYERADWDKIGAEVLLQMGPWKEIKTRPALDETVERLTEITASAVENHIPNRRPTPYSKRWFTPDLKVQQTEVNRLRRKWQESLTLFEEMQQKRRIWTHTIEKAKKSHWKQFLDGAREGMLWKAATYMKPRETWGSVPSLQVGCNELVDNKDKARAFLDTFFPKMDEPNDDPPTQAPLELPWPPITELEIERALKAAKSSTAPGEDGLPTLVWKHLWKFLNRFIAGIFTASVKLAYHPKQWRRAKIVVLRKPGKPDYSNPGAYRPISLLNTLGKLLEAVVARRLSYLAEKHSLLPDTQFGGRPGRTTEQALLVLSSAIDRAWYKCRVVTLIAFDLKGAFNGVNKISLDARLRVKGIPTVARKWIASFMSDRFANIGFDNFRTKIAPLDNAGLAQGSPLSPILFTFFNSELVDQAVTPHGGASAFINDYFRWRVGPSAEDNLAKIQSEDIPRIKAWARRTGSHFAAEKTELIHLTRKRSQHLQGQVVMNGETIKPSPTAKLLGVVFDQELRWKEHVQQAIKHATKVSIALAGLRHLRPEPMRQIYQACVTPVVDYSSTVWHDPLRDKTHLRHLNSVQRVSLIRILAAFRTVATTSLEVEAHVLPTHLRLRYRAQKVIAKLHTLPHSHPIRSALSRAQKRRNNIGTSSRFPLAEALKTMNLERLDELETIDPSPLPPWRTEPLTEVEIGSDWETAVERAEATRSTSDIVVYSDASGREGHLGAAIRSHKIATILCDSKSALQATQNVRNNSGQRIVHAIHQAATEIQPKTLHAGAKPIPSARCSPGRVSASAVISSINGNRSGSHPTKAVTYGKSTAPYQQPTRGGYMVACPGTRRTC
>88175402_Cgl_pol#LINE/Tad1? gi|88175402|gb|EAQ82871.1| hypothetical protein CHGG_11047  (AA 435 and up) [Chaetomium globosum CBS 148.51]
QSLLNDEGLKDFAVLAISEPYARLIEGSVTTVPMSHHNWTKLIPTTRRETTWPIRSMLWVRSDIEVEQIPVPSADLTAARIRLPDRAVLMVSVYVEGGSDEALEDAMREIDRLIRRFRNGTGTRTDIILAGDFNRHDQLWGGDDVSPRRQGEGDRIINLMDEHSLCSLLPRGTKTWQSGDIESTIDLVLASAELADQLLRCAIHPCDHGSDHRAIETAFDTSVEDRPSETRFLFKNAPWAEIRTRVAANLERIPWDGNVQQQTDRLMAAVTEAVYGLTPKAKPSPYAKRWWTTDLTRLRQTYTFWRNQARSRRRIGQTAPELEQRARMAAKEYHDAIRRQKSSHWNDFLADDANIWQATKYLQTGSGTMGDKIPPLVRPDGSITEGKAEQAQELLTAFFPPLPARIEDEGQRPQRAPVHMPDLTMEEIEQKVLSAKPWKAPGEDGLPAMVWRQLWPVVKDRVLHLFRTSLRDGDIPSQWRNAKIIPLKKPGKSEYTLAKSWRPISLLSTLGKILEAVIAERLSHAVETCGLLPANHFGARKRRSTEQALLLLQEHIYKAWRARKVLSLISFDVKGAYNGVFKDRLLQRLKARGIPEPLVKWIDAFCSKRTATIAVNGFTSGRQELPQAGLPQGSPLSPVLFLFFNADLVQHKIDANGGAIAFVDDYTAWVTGPSAESNRTGIQAIIDKALDWEKRSGAQFEGEKTAIIHFTRNMERFSEQPFSVKGEVVKPKESAKILGVVMDRELRYKQHIARTAAKGLAAALALKRLKMLSPRTARQLFVATVAPVMDYAANVWMHACGEKALSWLNRAQKIGALAITGAFRTAATAVVEAEASIYPVRERHAQAAASLWINIHTLPGTHPLAMKKVRTTVRFVSPLQKIARVAEGVRVDRMETIQEYAVPPWVPRLRPTLEADRGKAAEMVNKISGIVIATSSSVKKGIVGMGGLARDTLFNRTSETVTNYAVVLGTREEQNPYTAELAAIAMALEKLPASICHRHITVITRNQSALAAVGQPRQQSGQSIIRQIYDLARLHRQRGNSVNFLWIPAEIDFALGSDAKAAAQRASKQGRTPDSQIPQAKSTAMRLAMERQRATRVLPVSVGKFSKAMDAALPGKHTRHLYDKLKRREACVLAQLRTGMARLNGFLSRIGAVESDLCACGQARESVEHFLFRCVRWTALREDMLQCTVARRGSLSFYLGGKAPSDTRHWSPDMKAVRATIKYAMATGRLELNEEESLDQSQ
>88179640_Cgl_pol#LINE/Tad1? gi|88179640|gb|EAQ87108.1| hypothetical protein CHGG_03727  AA 309-1339 extended with gi|88182979|gb|EAQ90447.1| [Chaetomium globosum CBS 148.51]
MNRTFQVIQLNVRKQGEVHDSLMNDVAIQDAAVIAIQEPQARRIQGRLLTTPMEHHKWTKMIPCTLKEGRWAIRSMLWVNKIVEAEQVAVDSPDITAAVIRLPERVVLVASVYVPCGDGEALKDTCENLRRVVAKAKRGVGTTVDIVVAGDFNCHDQMWGGDDVSSVRQGEADPIIDLMNELTLSTLLPRGTITWQAGGYGSTIDLVLASEELAEAVIRCGVHRTEHGSDHRAIETVFDIEVPVPTHHDRLLLKNAPWKDIRAKIANTLGDTPAEGTVQQRTDRLMSTVSGAVHSLTPKARPSPYAKRWWTTDLTQLRHIYTHWRNRARSERRAGWTTAEIEELAKGAAKQYHDAIRQQKKKHWAEFLADNDNIWKAAKYLKSGDDTTFGRIPQLVRADGTSTADHREQAEELLTRFFPALPDTIDDEGPRPQRAPIMTPILTMEEVERQLFATKSWKAPGEDGLPAVVWKEVWQVVKHHVLALFRASLEDGALPSQWRHANIIPLKKPGKKDYTIAKAWRPISLLATLGKVLESVIAERLSHAVETYGLLPTNHFGARKQRSAEQALVFLQEQIYTAWRGRKIVSLISFDVKGAYNGVCKERLVQRMRARGIPEELCRWTEAFCSDRTASIQVNGHAAERRDLPQAGLPQGSPLSPILFLFFNADLVQRKIDSNGGAIAFVDDFTAWVTGPTAQSTRKGIEAIIDQALDWEKRSGATFEADKTAVIHFTRKAYKANSEPFTIKGQDVQPKDHVKILGVVMDAKLRYKEHIARAASKGLSAAMELKRLSGLSPATARQLFTAMVAPVVDYASSVWMHQCNWKTAPAIHRVQRVAARGIIGTFSTVATRVAEAEAHTPMAQDRFWKRAIKMWTDIHTLPETNPLRNATSRMRKFRGSYRSPFFQVADLLKDVPLDSLETIAPVVLAPWERRVRTTVDGAGIQQKETEWAVRIAVSSSARNNMVGIGGVVRLPLPMREGSRNEAFSVTLGSRSEQNPFSGELAAIGYALRWIRNIRYRKIILATSNKAAVMALERPHQQSGQQYLCQAYDAISALRKAGNTISVVWIQAGTKNELLNTAKAKAKEATRQDATPQTQDPAMRSTALRIAWAKRAPPTSLPDKVGRHSKRVDIALPGKHTQLLYDHLSRSEAGVLAQLRTGMAKLNTYLHRIKAAPSDQWGTSPSTWEESRPRMTRTGPPTCGRCGRRYVLPLPQVV
>88184604_Cgl_pol#LINE/Tad1? gi|88184604|gb|EAQ92072.1| hypothetical protein CHGG_00307  AA 369-end Has a deletion around original AA 1350 (nov c. 980) [Chaetomium globosum CBS 148.51]
MSRTLRLIQLNVRKQGVVHESLMNDKDIQNATVLAIQEPHARRIHGRLFTTPMGHHKWIKMVPSTWREGRWAVRSMLWVNKDVEAEQVPIGSPDMTAAILRLPGRRVLVVSVYVPKQDPQALRETCDNLHKTIMGARRDAGTTVDVVIAGDFNRHDQLWGGDDVSVEIKGEADSIIDLMNEFALRSLLRRGTKTWHLGDSNTTIDLVLASAELAETTVKCAIHRTKHGSDHRAIETVFDTLVPVPKERDRLLLQNAPWKEIKTEIARALDATPSGGTVQQQTDRLMSAVLETVQTLTPKARPSPYAKRWWTTDLTQLRRIYTYWRNRARTERRAGRSLVDLEEMAKAAAKQYHDAIRQQKKKHWDDFLEDNSNIWKAAKYLKSSDDIAFGKVPQLVRADGTATADHREQEELLTTFFPPLPERIEDEGARPQRAPVAMPPITMEEVERQLFAAKSWKAPGEDGLPAIVWKQTWPVVKYRVLALFRASLEHSTLPSQWRHAKIIPLKKPGKDDYSAAKAWRPISLLATLGKLLESVVAERISHAVETYGLLPTNHFGACKQRSAEQALILLQEQIYTAWRGRKVASLISFDVKGAYNGVCKERLLQRMKARGIPDELLQWTNAFCSERTATIQVNGYTSEIQSLPQAGLPQGSPLSPILFLFFNADLVQRRIDSRGGAIAFVDDFTAWITGPTAQSNREGIEAIIRDALDWETRSGATFNVQKTAIIHFTRTIYKTDAQPFTIKGQIVKPQDHVKILGVLMDTKLKYKEHIWRAASKGLEAAMELKRLRGLSPSTARQLFTCTVAPVVDYASNVWMHACKNKLAGPINRIQRVAAQAIVGTFLTVATSVAEAEAHIASAQDRFWRRAIKLWTDIHTLPYTNPLRRNTSQMRKFRKSHRSPLYQVADTLKDIAMDELETINPFTLTPWENRVQTVTNEPTTTRRNANDDIICIAVSSSARNGLVGVGGAATLPASAYGTPKLGTFFLYAWLKGAAPEVQMPRMRSTTLNVARSKRDSSNHLPDKVGAHSKRVDAALPGKHTQLLYDHLSHKEAAKLAQLRTGMARLNGYLHRIGVAPSDQCACGQAKETVDHFLFRCTKWTAYRRKMLECDDQETPLLAEDIAIKREFDEALAAEEMQRCLRCKERWFDIKLMADGVCKHCHDKDDKKRQEESFFFSAENKLDFGPVPPQLPQLKPLEELFIARVHVSVNVRGQQYKYRGHIVHFLRDVGKVYSELPLLPKDLDIVILRPRGSENAEQMDRQFRNRFRVQPEEDGEVVDEAEVPNMLVHDSELNQLQERVDGGAAEVNAANEQVPLQPVEPQAAHQLKMPSIRRTPLDEFNQTHALLSLACPTLFPRGVADFVEPRQRKISYQDYIQHAMKWEDGRFAEHHSFRFICAKHSDEAAGKGSKSILRQQESPHTSRIYRETPSRAIIRQLQALDAVGGKDPSEESIGI
>I-1_AO_pol#LINE/Tad1? 582-4100 via tfasty with I-4_AO_pol, 3 stopcodons. N terminus from gi|83775366|dbj|BAE65488.1|  [Aspergillus oryzae]
MASGQRSTDPNDRTTETFHGLGGYKRGWGGRASPFPHARPDERVPLATRHSETTTAGEATTTNDDTDDTSQDRQIRTDQKAPQLLEFADSRLLDLWLELGTITQDRNNHRSTIDLVFGAQSLADQHIACEVAPKVHADSNHLLIRMILYLAPHAYQPPKRRQxKTIEAAKLRKFMASNLNIYSHWDVLKMNLSAASIDAAVDFLMEVVQRAIQHAVPWARPSEWAKPDFTPECKRAVKITRKLRRIYMRHRLPSDWTAYVKARNRKGRIINRSLRRGFRRWVSEAIDQGTHGIWRVAKWARNRGGRAANMIPTLNGPHGPADTTEAKAEVLRESFFPEPPPADLSDIARRTQPPQIEFPEVTKEEVAKAIRRAPPDKAPGPDAVPNKIWHELCKVPVFPERATALFNASNKTGHNPRHFQTSTTVALRKGGPRDYRKPKSYRPVALLNTFGKILESIIATRIAWALEEHKLLPQTHLGGRKGISTDHVIQLILDNIYRAWGQGKKVSMILLDVSGAFDNVSHARLLFNLRQLKLGHFADWLQSFLTGRTTRISLAGELSAEFPTPTGIPQGSPLSPILYLIYNTPLIQDLHVRRPQGGSTTAFGWIDDACTLAVSDTFAENVETLNAALSRAGxWASRHASKFAPDKFELIHFTNPRETETPPQSPGLPPDHPDQIWEVPLPPAGHDQMEIIFTDTIIKPTETAKYLGVWLDKTLSFSIHRTKALAKAHGTLAALKGIAGSTWGAPLRAMRRIYQAVIVPQLFYAAAAWYSPKGGQIVASINQKMLAEFTQIQKQAALLISGAFRGTSAAALNVELYILPVHLQLQQIIEETAVRIRTGPELACPESVLRPRTVQERRRSGWTPMEALSRKGGPLWPLGKKEWETRKPYILAPWEPPVTTVIDSHEAALIYHRHYCARREGIAVYTDGSGLNGRVGASTVCLSQGWKRNCTLGTEEESTVYAGELTGIRMALHRLRRETRPATVFVDSQAAIQAIQNPRRPSGQYILDQIYYIIRRYNMQNRVQIHWIPAHIGVPGNEAADEAAREGATREGTQQTGEAICLAAAAKRQIRRSIKDRWIREWKTEKTGPTTYRLVEVPNKKILDLYKNLSKSYASIIIQMRTQRNGLRHFLHKIKAVDSDQYLYALGSQTARHILLQCPLYAELRGRMIGKLDPGVQKRLDYNGIMSHPQAIRYVAEFMHQTELLSQFRDVEQTGHYxRRTDIEDDEYIVTPGGGRSAPSIHISVFTYQEH
>I-1_PPl#LINE/Tad1? 2-2026 [Postia placenta]
KELTDWTYRKLTGRTTTIAFDGYTTELYTIPSGLDQGCPLSVIFHHFYNARMTELARPDNGEGTSGFVDDSTFLAEAKTFEDTHHKLDQMMTRPDGALHYAREHNVQFELTKTALLDLTRKRERPTGHPTRTRPMTRPTSVIAGQPITPSASHKXIGVILDQELRFKEHAAYALGKGQFWAAQLRRLSKPTQGMPLRFSRQLYLSVAVPRMLYAADVWCAPTLTSTKNGRRPSQHVRKLIGVQRLVTMQSLGALRSTATDLLDAHADLLPIDLLVDRIVMHSALRLATLHPSNPMCAVAKKTARRLVKRHRTALHHTFRIFSVDPDRTETINPTRLSPNWEPRFRVHIAPSAEKAVEEAESCRDGHKIWTDGSLIDGGVGAAAVLEKNDEHKAVLRKYLGSGTEHIVFDGENVGLALGLELVRKERNVRRVSAFVDNKAALLATGNTHARPGHHLTDIVHKQIDHLFRCHPHARLTLRWXPSHVGVPGNEAVDHQAKMAARQRPDPPNMTALPRVLRKSLPMSVAALKQHRTANXKREALTRWGTSPRCDRLRRIDPTLPSNKFLKLAGTLPKQQTSLLIQLRSGHAPLNKHLFRLGKADSARCSCGTDDETVIHFLLRCPNWNRARAPLRRAFPPSNLQLRTLLNDPDALTHLFDYIKATGRFAAGRNDRLNPH
>I-3_AO_pol#LINE/Tad1? 235-3766 via tfasty with I-1_AO, 6 frameshifts and 10 stopcodons.   [Aspergillus oryzae]
MCPTRLQAAAEADYTRKHKPKYFPEPARPVTSLPIGPPPLTSNPSGDSEQPEEPEPEPAESSAETRKKAKKVVETSLTTTPTPLPEGAQRNLRRRAITYAHEVCLVNSATSDHSESTEPESDQREPSGTISQADSSEQSEESNPSGRSDTDAPSAPKNSELDRDANLEIPDREEVQQCSALDTDTRPEQQTPISPFSSPKKRRSTRLQEEPIKRRKTTGPREIPQPTPEQWRNPSRLDPQAESRTCRSYVGIGTDRQLKTTDQRKTHQTKCPQGARGGDGADRRVPSSAPAPARLRSTRNATRLTGAYAPPLQGPSGLEFTAQAKAKLLSQMFFPPPPPVNLDDIRNYKYPEPLQNPGITQSEMLQSINRPREDKDPCPDDITDRFLQVTADLVALILTEIYNESLRQVHCPTHFRKARTVALRKPGRDGYSKPKSYRPIALLNTIAKVLEGIMALRLSYFAEEYKLLPDNHFRGRKGQGTETALQVMEIISRAWKRGLTASALLLDNLGAFDNVSHQQLLHNLRKRRIPSVIVNWMASFLTERYTTLELPEVSCPESMIDTGIPRRSPVSPILYLFYHADMHxRRxRNENIGYIDDATMVAVGPAPAENCxTLRKAFHQYLRTVVTDTRLGVVLDRQFDFQTHLQQIDTKCSQGLRAITLLGRSKWGPSLEDKRQVYNACVTPVALYGASVWQHPGAPKKKGMHDRQLRSLVAIQRRAGHSISGGFKVVSRDAFDAELHLLPITQRLRRNRLTALTRIAATPAYQRILRQRAFSQNQALHSALEVAKESSTYGLTSTPCGWRSQPHLCAPWWKLPHVEIAKWKTEALTRHGIHCIAYPVVPKVYTDGSGHHGETGAATFCLDPRTYxQPYLGPGRHATVPVAELAGLVLALRMATEDPxSQGPVEVYIDNESSLNMLxNPKxGSGQHLIKQIACLLGERRQQGWPTTFxWIPAHVGVPGNELADEMAEWATGWRPALGTSDGPRAKGIPGLDLAPQQSTADRWIRTKFRRMGRxLARQGPKAPGKEPHDLKPTIRSKDRIIYSGMTPSERSVLFQTRSNKIGPNGxLARAARIKRADTDRYPRCRSAPETRHHLLITCPAYRKLMIKKWFDSQSRPQNLKEALNNLKYTLRTARFLLQTALLRLYGEYDDDDDNDSGDDDVVDSSDSDTSGSGLT
>I-4_AO_gag#LINE/Tad1? 163-1392  [Aspergillus oryzae]
MAIPPAGVAEPHPTNTEETPRIFTQEVFRPRIPLTRKRRKRGVDTEGNEPISNPEFATCGENNGRVTNQDVRQFFTSFKEALAHQTEIIEAARAEIRELKAEQQLLQTQNVELREEIQALRAKTEAQQLNTPPTKSWAAVVAGNPVPDPKTTVPRPRNEPNCVRISTAPTLDEEIDNDRFSRFLPTDAANTHIRTALLNAEPTKEVQVAGIGPTKTGYVIRFRDAQSAETARNNTEWLEELGNNTKVVKPRFGIVVHRVPTEDFNLEENKKQGIEKIMIENDLYEKEFRVEDIAWLKKRDMPMGKSASMGIWLDSPEAAEWIINNGLLVGQRFIGSIEPYRVEQKRCRRCQQFGHLAWSCKKQVKCGYCAREHDQRHCFPGIRPKCSDCNGEHPTGDRMCQAPLNPRSSQ
>I-4_AO_pol#LINE/Tad1? 1392-5294  gi|83776064|dbj|BAE66183.1 [Aspergillus oryzae]
MTTNLRILQLNIMKSRPGMEALINDHQSQNLDMLLIQEPPMTAYRSHVNHSAWRLYRPTYTDESVRFRSLLYVNRRISTSSHRQIHCNHPDVVAIKIWTPELQYLIFSVYIPPVALYEAPEVSSAQQILEEIQTSIRQHAEGNNRVTKLILAGDWNRHHPAWSHRPVHHSFAEHAEELINFFQAHELQWCLAPGQPTFWSLKEPGKTSVLDLTLTNNTERLIKCQLYHHHYGSDHRGTYSEWSLQPKQNVKLKLKRAYDRADWTKVGQDILNLIDPQPRILSSQDLDQVVENLVHTTTTVLDQHVPFLAPSPYSKRWFTPDLKVQQTEVNQIRRRWQDGCAILGPSHPMTKTLFEEMRRKRRQWTRAIEKAKSGHWREFLDKAGEGHLWKAATYMRPRDADMSIPTLKVDTKEVTDNQEKAEVFLEAFFPKMADPGDEEVESPAEELRWEPITEIEIHRSIRAAKGTTAPGEDGIPTLVWKQLWAYLKETITIIFTKSLDLGYYPNQWKRARIVVLRKPGKPDYSAPGAYRPISLLNTLGKLLEAVMARRLSYWAEKYGLLPDTQFGGRPGRNTEQALLVLANAIDRAWVRSRVVTLVAFDLKGAFNGVNKTSLDTRLRAKGIPFKARQWICSFMENRQASVTFDDFETENLPLEHAGLAQGSPLSPILFCFYNSDLVDQPVDSNGGASAFIDDYFRWRTSPSAEENIKKIQEEDIPRIDEWARRTGASFAAEKTELIHLTRRKSEHCKGQILINGQVIKPADTAKLLGVIFDKEMRWKEHIQRAVRRATKVNIALGGLRHLRPEQMRQLYQACVTPTIDYASTVWHNPLRDKTHLRLLRTVQRTALIRILSAFRTVSTEALEVESHILPTHLRLKQRAQITAARLSTLPGNHPIHGVIVRAIARSSHIGSGQRFPLAETMRTMDLNRLQALETIDPTPLAPWRTQPFTEIEIEPDREKAKANASARQAMTGATVFSDASGQQNQLGAAAVALDKNQQILGSRQISIGSMSYWSVYAAELMAIYYAIGLVFQLAQKNQTTATTTRGPATILSDSMSALQAIANAWNKSGQRILQAIHQAAGELKARGIPLRLQWVPGHCGDPGNETADRLAKEAVGLEKKHPFRHLLSREKGYIRDRISKEWEQEWRTSKKGGHLRKIDRTLPSSRTRRLYGSLPRNRAYLLTQLRTGHSWLATYGKQHRFQEEEKCECGAVETVVHVLIDCPRLNRLRQELRRKIGRAFNNISDMLGGAEQGKEGRLQDAPQDSSVLGAVLDYAEASQRFRSRAPRGRQNRTPGIGQHRP
>I-5_AO_gag#LINE/Tad1? 81-1409  [Aspergillus oryzae]
MSGRAETRTPDPPDRDEQENSPPRLVRPKRTTRPPAHYAQEQEIETEQRNTRSQRKKKNQGKPVAQDKAATSDDSSTEREDSDTSKLVKEIVKLRREIRRRDELYKEELQRVKEEFGAALTEFRHELLANRPPTPQAHPESCAQSGHEEILREIQSLRVAVNPSGSPSYADVARTPPTSQPSNIRTLSSWNTTPTTFTDTLYCTIDTSKMADTESERPSAGPIRTAVETEIRTMENYTNWRCRAVTVDPKNTNRIRIACRDEAEHQLVKKVAETKVGAGARVLRDELYPIKVDSVNRTAVLDENGDIRVGAAAAFGEENETTVAKIAWLSRKENAKAYGSMVVYLTKGSDARRLLADGFFHAGGESGVTSTFEHRPRPIQCYNCQEIGHKAFQCKSTQKCARCAAEGHHHSCCNQSVPKCIPCGGPHESYSKNCRKLYPSHHE
>I-5_AO_pol#LINE/Tad1? 1405-5169  gi|83776057|dbj|BAE66176.1 [Aspergillus oryzae]
MNKTLRVIQLNVRKQGAVHESLMNDEETQNTVALAIQEPQARRIQGRLLTTPMGHHKWTKMVPSTWREGRWAVRSMLWINKEVEAEQVPIESPDLTAAVIRLPERLIFMASVYVEGGNASALDDACNHLLDAITKVRRDTGVVVEILIMGDFNRHDQLWGGDDVSLGRQGEADPIIDLMNECALSSLLRRGTKTWHGGGHSGDCESTIDLVLASENLADSVIKCAILGTEHGSDHCAIETVFDAPWSLPKHQGRLLLKNAPWKEINTRIANTLAATPSEGTVQQKTDRLMSAVSEAVHALTPKSKPSSHAKRWWTADLTQLRQIHTYWRNHARSERRAGRKVPYLETMAQGAAKQYHDAIRQQKKKHWNQFLADNDNIWKAERYLKSGEDAAFGKIPQLLRADGTTTTDHKEQAEELLAKFFPPLPDNIDDEGTRPQRAPVEMPAITMEEIERQLMAAKSWKAPGEDGMPAIVWKMTWPTVKYRVLDLFQASLEGGTLPRQWRHAKIIPLKKPNKENYTIAKSWRPISLLATLGKVLESVVAERISHAVETHGLLPTSHFGARKQRSAEQALVLLQEQIYAAWRGRRVLSLISFDVKGAYNGVCKERLLQRMKARGIPEDLLRWVEAFCSERTATIQINGQLSEVHSLPQAGLPQGSPLSPILFLFFNADLVQRQIDSQGGAIAFVDDFTAWVTGPTAQSNREGIEGIIKEALHWERRSGATFEAEKTAIIHFTPKTSKLDREPFTIKGQAVEPKDHVKILGVLMDTSLKYKEHIARAASKGLEAVMELRRLRGLSPSTARQLFTSTVTPVVDYASNVWMHAFKNKATGPINRVQRVGAQAIVGTFLTVATSVAEAEAHIATAQHRFWRRAVKMWTDLHTLPDTNPLRRNTARIKKFRRFHRSPLYQVADALKNIEMETLETINPFTLAPWEARMQTDGEAMPDPQAIPGGSIQIAISSSARNGFVGFGVAIEKQPPQYRKLKLKTFSVTLGARSEQNPFSAELAAIAHTLNRLVGLKGFRFRLLTSNKATALTIQNPRQQSGQEFVCQMYKLINRLRRKGNHIKILWVPASEDNKLLGLAKEQARAATHEDAIPQAQVSRMKSTTLNLARSQAATTKALPEDVGRHIKRVDAALPGKHTRQLYDGLSWKEATVLAQLRTGMARLNGYLYRINVAQTDQCACGQARETVEHFLFRCRKWTTQRIALLQCTRTHRGNLSLCLGGKSPSNDQQWVPNLEAVRASIRFAMTTGRLDAV
>I-6_AO_gag#LINE/Tad1? 2-481 N terminus truncated   [Aspergillus oryzae]
PRFAVVAHRTPTEDFLAPEDEKDFISSIMEENKMELHGFRINRIAWLKSRDKPIGKHGSLAIWFDTREAAEWTMDNGLLVRQTCVRVEPYKFKERRCHRCQGFGHLAWACRGKARCGHCAGAHELRHCPPGVRARCLDCTGEHPTNDRSCPNPAKHPYSQ
>I-6_AO_pol#LINE/Tad1? 481-4356   gi|83774376|dbj|BAE64500.1 [Aspergillus oryzae]
MTTPNLRLVQLNIWKSRAGMEALINDSQTQNLDILLIQEPPLTAYSTHVNHSAWHLYQSTCQEDTPKKRSLLYVNRRISTASHRQIKCNHPDVTAVKMWTMERQMLIFSIYVPTTNHSQPMEEVSIQAMLEEIETCIQQAIETTDKPTTIIMAGDFNRHHPMWSKNRIYHVAIEHAEELVTFFHKHGLQPCLPRGTPTYWSMSYPGSNSTIDLTVTDTPESLIKCHLYHDHYGSDHRAVYSEWSLDPSRNAEREPRRAYDRADWKQIGESVQAQIAQTPPIHTEAELEGAVAKLITCTTFAVDQHTPMAKPSPYSKRWFSPELKEQQREVNRARRKWQESCAEKGRQDPMSLILFGDMRTKRRAWTRAIEKAKATHWKDFLDSAGEGHLWKAASYMRPRESYGNIPPLKQDKGETADNTEKARLFMRTFFPRMAPPEDTMEMEQREEIPWTPITEQEVYRALRAAKPMKAPGEDGIPMLVWRQLWQWLRTEILRIFTASVNLGYYPEKWKRARIVVLRKPGKPDYTLPGAYRPISLLNTLGKVLEAVMAKRLSYYAEEYGLLPNTQFGGRPGRNPEQALLVLRNAIDRAWLASKVITLVAFDLKGAFNGVSSNILDRQLKAKGIPTKLRAWVASFMEGRSASISFDDFESARSLLENAGLAQGSPLSPILFIFFNSNLVNQRVDYHGGASAFIDDYFRWRAGKSAEENIRKLQEEDIPRIEQWAKLTGSCFAAEKTELIHFTRKKREQTKGRLVIQGATIEPSATAKLLGVVCDQELRWKEHVQQAVNRATKVNIALAGLRHLRPGQMRQVYQACVTPIMDYASTVWHNPLKDKRHLRVLDTVQRSALIRILSAFRTVATATVEVETYTLPTHLRLKQRAQRVIVNLCTLPRDHPIQDVISRARRRRDNVGSQPRFPLAESMKTMRLEQLDGLETIDPKPMAPWKPPGFLEIDIEPDREKAKDKATALQASSNMVVFSDASGQNNQLGAATVILDHNKDVVESRQLSIGSMANWSVYAAELIGIFYAISLVLKIVSSRPRTPTTSQQEPATILCDSMSALQAIRNPGNKSGQRIIHANLQAAAELKARGIPLRLQWIPGHCDDPGNDAADKLARMAVGLDKMHPFPRLVSQERASIRKQILKEWEHEWKTCKKGSHLRRIDPKLPAIRTRRLYDSLPRNQAYLLTQLRTGHCWLAPYGKLHGHREDDKCECGAKETVTHVLLDCSKLRIPRQKLRRELGEAFGDIPAMLGGKGETSHVKAVLDFAEASQRFRSRGPRGPQRQNSRQTATTGP
>HETA_gag#LINE/Telomeric 731-3492 via tfasty with TAHRE_gag, 1 frameshift. [Drosophila melanogaster]
MSMSDNLFSDDEVLSISSSPEQRSSPFYLNISPMSHGSDNSQINTVIINSKKLPSNQADISLKNSSGAAIKIVNSLSHKKKENTNVNNAQKDPLSLTNTTASTCGAKSSISEGKLSSPPSTSHTYEGKLLTKLTHTHTDFRGAKTSDAMGSFPSLSHSDNSIEKNLSSSTKIGPNASSPPSHAHTHTSKSTDISLESRSKHPALANTDARSIKANANDNGEIFSSLIQIDERKQEERPCTTINAFWSIFKPKPDVTKLSLKRKPTNPTKNTGKKCISPHKKSAYLCPSAQDDLNLNLNPKSSAKPTVVNLPAARILSRPAAKRDLFKSSSSRSPDEQPMSFSEVVAGTGSIFAAPCVPAPLTKTPGKRTNDDLDCSNFKTPNKKLCATSNFVTPSIFPPLITPVFKSKAAQSVYEESKARNGPPPPALACSINASARSATAPPGIAPLPPHNTDAELPPWKIVPQSRRAPPILVNDVKEIVPLLEKLNYTAGVSSYTTRAIEGNGVRIQAKDMTAYNKIKEVLVANGLPLFTNQPKSERGFRVIIRHLHHSTPCSWIVEELLKLGFQARFVRNMTNPATGGPMRMFEVEIVMAKDGSHDKILSLKQIGGQRVDIERKNRTREPVQCYRCQGFRHAKNSCMRPPRCMKCAGEHLSSCCTKPRTTPATCVNCSGQHISAYKGCPAYKAEKQKLAANNVDINKIRTIKDATNNFYKRQGPPLRNNTPRLPHSSAILSKSIAEARQEAARKSMLNPFRQNINDRRPRFSSHDTAIQKRLNKWRRNTNKIPKKGRIALKDNAKPRPAHRTSNPAQRHLEDYQDMLRRERSEENDQESEKGTPNTKQVGNDSPPTTSRAARASFKPRIIDDTTPSPKICNPNSQKGLLDDPTTSLANRVDNLEKKIDILMALIIQGRNNNLDMDTSN
>TAHRE_gag#LINE/Telomeric 453-3350 [Drosophila melanogaster]
MSTSDHLFSDDEVHSISSSPEQRNSPFHLEISPMSHESDNSQSNISIINLRKLPLKPTNNISKCSSGTAINIFHSLSHKEKENMNTNIAQKDPLSIDNTAADTDGAKSSILKGKLPSPPLSSHTYKGKLPPATTHTNISALTHTDASQREKIPTSVICTNAAAATNTNADLGAKTSDALGNFPSLSHSDHSMENNLSSSTKIGPNTNSPSSHILTNTSQATNISAESRSKFPAPTNTDARLKKAITSDKGEIHTQIQTNKSKEHNQENKPFNYLSCYASWSTSNPKPDISKLSLTRKSTNRTGNSGKRSISPHQKNASLCPSAQGNLNSNLNSNSNPKSSATPTEVNLSAARTLSRPAAKRDLFNSSSRSPEEQPMSFSEVVAGTGPDIIAPSAPAPLTKTPGKRTNSDLDCSSFKTPNKRLRATPNFETPSLFPPLITPVFKSKAAQSVYEESKARNGPPRQPLPCSNNASARSATAPPGIAPLPPQNTDVELPPWKIVPQSRRAPPILVNNVREIVPLLEKLNYTAGVSSYSTRATEGNGVRIQAKDMTAYNKIKEVLTANGFPLFTNQPKSERGFRVIIRHLHHSTPCSWIVEELLKLGFQARFARNMTNPATGGPMRMFEVEIVMAKDSSHGKIISLKQLGGQRVDIERKNRTREPVQCYRCQGFRHSKNSCMRPPRCMKCAGGHLSSCCTKPRTTPATCVNCSGEHISAYKGCPAYKTEKRKLAVNNIDINKIRTIKDANITNYGRQGPPSRNNFPRLPFSSSTSNRTTAESRQDTARARRNNPFRQNRNEARPIQPRFSSHDFAIQKRLNKWRRNSDNVSKKGTINPKDKPKPRTPNMTSNPAQKHLEMFQEKLRKARCERKEQDPEEKKTNIRMGDDESPPTTSRAARAFLKPRIIDDNIPTPMDTYSNPQKSPSDFDSKSLTQRVENIEKKIDNLMELLFKCLESTKESTLAHLMTS
>TAHRE_pol#LINE/Telomeric 3377-6697 [Drosophila melanogaster]
NTTMTFNLNNGQASNTLKIGYWNSCGITNKTNELEAYIKKEGIQIMLVTETRLERNSNALNIKGFHTYLAQNPTSHRKGGTATIVSQNIRHACLNPIETDFMQSAPIALIPSSRIRADMTIVAPIYCPPVYKWTTEQFSKLFNHFEMLLDGKSKFILGGDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHATHFPFDKKKQPSALDFAICKGFHTQKLKTYSTDELSSDHLPIQIVLDPDDSDWQHNKTNNAIIQKRTDLTKFKKNLENKILLNTEIRTGQDIDDCIDILINNIKSAANEATPPNRPQNNRTYNSSRRSTNLRLDEATKRLLEEKKELNRIFRAVGTDEARRWFKNVQNRLSKEIRKLKQKLLNRNLQDIDTTDRYRTQKLWKTTNTIKMQPRPCWPIKKDNDDSRQRTDYPWTRTLDEKAEAFASHLESRFRTNQINDAKDREFVRNELNKFKSLNASGESGNSNFKPVTLAELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKHASISMIPKPGKSPFALNSYRPISLLSGLSKLLERILLKRLYDIDSFAKAIPSHQFGFRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLLYKLSRLIPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIYSSDMPYPIVKDYMRNISFPDYHPTNIILATYADDTIILSRSKYTKLAINLNQNYLNVFCRWSKKWDIAINAKKTGHILFSLKKEQTNIYTPPLINGQRAAKLNKQRYLGLMLDRRLTFCAHMTLLKGKTIAAYKKLEWLIGKNSHLPKNAKILLWKQIVSPIWHYAIAIWGSLVSDTQAKKIQTMENKYIRRIINASRYTRQADIRTKYNIKSFDEIFDKASQRYANSLTDHENPLIYDLLINAYKPNRLELSKNRYVKQLSKYILPLQQHRPKPPAEPIYSSIHNYTKKEEAEIVAKMRTKFRQTLPTLLRIADQELEIRQSIAEEKRKEKEKSERRKALEKGPPDRWCELQINKYSKLYRKGLRAREEILELMLGQPATVIKIVIPDYEPEDDLTKKS
>TART_B1_gag#LINE/Telomeric 812-4093 [Drosophila fruit fly genus]
PAVHFPFDLSKSNSPPRLSDRIGKSVVIKNPAEAPVQQLPKVNTTKRNNKMDGHNGDQSEGWATVLSISSDDSNSLSSPPSIIVSSLDTTPTSHETTIVRRSLYQTNADMKSYDFENIVLNENKNTILPDPLFVDKCGSTANTTEANEKKPANSPFPISISKNFSTSSPLTHVDTPTQEDDASAFNTLKAAKTARIIFPTHTHIKPTKPSPPSKELSTNSALKTLSYTDKITGTQKNLPDKTHVDTPTQDDDINATKASKTAKIISTQTHLGETKPIQPAKDPSPRTQKPIAHKADETLTHTDKLTASQNLVPAKTHINTPTQYNDTNATNALKTAKINFSSHSHQSEIKPTQSAKNISPLTQKQFTSESAGTHTHTDKHKNTASQNLFSAKTHINSPTQHNYTSAATASKTAKLILSPHSHLSETKPTQPALSPSPLSQKQITSIAAKTLTHTNKHTASQNFIPAKTHINIPTQYNDTNATKALKTAKAASPSHTYSRQTKPIKSAINALHPAQDTNPSPAISAVTYTDKPTATQNIFPVKTFAELVRENAKRLPTPMQNSHQAKNDSAALGRPPTAARKNLNKTLISPKTPGKRRGDCLDEGLLQTSNKKVRIRDDFSDDDLGVTNLLSETPLFKSKAAIKIRQDSRRDSLQKSAEMDTAPAISPSNTAADSDLPPWKTVPASRKPPSIFLSNIQQIIPLIEKLNYKAGVNSFTTKSELGNNIRIQAKTMDAHNAIQNVLLEANIPLHSHQPKSAKGFQIVIRHLHQSTPTKWIESQLQDIGIATKFIRAMQFRDTRNPMRIHEVEVVPKADGSHLKVLLLKSLGGQTVKVERKRVSKDPTQCHRCQCFGHTKNYCRNPFKCMKCGQLHATVSCTKPKNLPATCANCNGSHVSSYKGCPAFQEAKQRLSINKIQSLHSQPTHLQTPRNKHPYPKPTHLQTPRNKQPYTHPLPRTSVNNTKLPAKRIQGKKISQRNLSINKRLHRMKKPRKETSPPTTSKKVLASLEESRKNPNSVLNPANTHLTHFRPPPLAQNIPNDEPKELSGEQYLLNRIEGMEKKINNLLEIVTRLLRQGKDCPKSPKNPFRDPIFV
>TART_B1_pol#LINE/Telomeric 4110-7385 [Drosophila fruit fly genus]
HQKVTFPMTRADNRDILKIAFWNAGGINNKIDELKLFILNIDAHIIIVTETRLDNNSTKLELPGYFTYLAQNPVSSKRGGVATIVNSSIRHMALKPIEKECIQSAPIVLLPENNRRSEMIVIASVYCPPSLRWLPHHFTDVLNFAEKTLGGQTKFILCGDWNAKHRQWGCTRACQRGTALYEAVQADSTAEIIATGCATHFPHDTRKNPSAIDFSICKGLGRFEKRISSGADLSSDHLPILLEINLDTNTLFLQKQNNNILKKNTNIELFKKVLERKILLNTEIRVAEDINDAISTFMKNIKDSAAESTPSPRIRDNPRRRHRQANRNSHTLALDENTSRLLEEKRILSRVFKATKNYEDKAKLKAAENRLKKAIKILRENRINEQVEGIDTSNPDRMRKMWKLLDEGKRTNQPNFPLKLETQKGPKWTKTIKETTETFVSHLEGRFKPNNNVPDYHIDRVNTGLRIIKESMLTERHNLNKNPHNQPITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRLGYYPEAWKHAQVKMILKPGKSANEPRSYRPISLLSGLSKIFERLLLKRLFKVDLFKKAIPLHQFGFRKEHGSEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAKILPYNLYIILESYLTNRTFEVKDQAGETSRTGQIGAGVPQGSNLGPLLYSIFSSDMPLPYIYRPSPTERIMLSTYADDTIVLSSDTLATAATRNNENYLKSFSDWADKWGISVNAAKTGHVIFTLKNDLPTSLRTMKIKGQVIKIESKQSYLGVILDSKLTLSSHVTKLMGKYTTAYRKMTWILNRRSKLPTKTKMLILKSVLSPIWQYAIAAWGPLVTDAQIRRIQVEENRKMRDICRAGRYTSNQTIRDRYGIKTVEEFYQQALHRFSETIKSHPNIAVRRIFTRHYIPNRLERSRQRYLKMTNEHITQKQTGQTLSPKLLKIPDLNDCRTLKKRNERDKIRQTHLIELPTLLRLEEEEEELRRIKKQEERERREKETQKWPPDRWCELEINLYNKQYRRGDLTRQEIIQKFRGQPLNVQRIILPDYKGDQEHN
>TART_DV_gag#LINE/Telomeric 4848-7958 The most Q-rich region is masked; still Q-rich. [Drosophila virilis]
MQKPTVSKSPPKSPHNASEITANSAVPPHRATEECSISERAKSELSQLQQQLTKNPQKQLSREHRRQQLLRLCEEEERLMPDVPAQQPTLTLKHKPKLKTVLANSSPPSSAPLRMSLTKSSKAKARKESQSSACREKSPEENTYVNVLESDDESDIAANKNYDQPQQQTTIAQVHNFNTNTSITSTPKAASHCDPSPNVSAHEVELHNVDNTREASYVNNIDELTDVFDDEDDDDDCYRPAAVINSSVADMLNRTTTVEHNSTATANRGEILANVKTSDAFAANKINSITFEKIEPIPQTITPTVAKGPKFNCSMLPTTSLSAKKSLKRKGTLPQQSKQKRAQTLAVQGNSRPGMKIQDFLKSSTRVTKATNKAAIINKYKKSNRNTKKVNPSSSTKLNNSSMDIDLDSSDISANNIGSDDDIVQIQSNAQEVTNHATKVQQQQQHRQQQQHHQQQQQQQQQQPTKSTKIPTIFLPSISDIQQIIDMLNNTVGANKYTTKCTQNDGVRVQCSDLLSYNAAIALLGANTEIQMHTHQMRSERGYRVLLKNVHHSTPCEQIRAELAKHGHTVRFASVIKHRFERRPLNMFEVELAPNGDTNDKVLELKTLGNQHIEVERQLKRDEPVQCHRCQSFGHSKNYCRRPFACLKCGEQHPTTTCTKPRNTPAKCVNCKADHIASFKGCSVYKMEREKLAANRVRAAIDRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPQYLAINTSAPSGIKSTKERKQQQQQLRQQQQKQQQQQQQQHQQLKPNNQLTYSQVASGQANTSLSHNPAMQHLKKYQQQLQLEQQQQQRQQQQQQQQQLQPEQQQQLQRQQRLRQQQLPEQQKRQQYQRQQEQQSHEQQQRHQQQSQQQQHRQQADSPLLEALQQNVISINEMSKKIDMLISLLLTMAASNTNINKQGEQQTIPLTTSTSDTLNNVNKKNNFPNLMSTLISTAQPINNSQSANANCEHIATDSSQYV
>TART_DV_pol#LINE/Telomeric Both at 144-3992 as well as 8012-12607 Virtual poly Q masked [Drosophila virilis]
MMADTPLTLLVTPQLLQQHICPTLTVHCLTGEGQTLFQMTNHSSDQYGNSFKIAYWNAAGVRNKLNELEVFMNRHKIDIMMLVELRLGPSALNPGPPITINGYHTYAATRPPPHHRCGGVATLVKHGIKHIALEAIVFESMQSAPVAVTLAKNETIVLAPIYCPPQYNWSADMFAKLFQHFEKLSGSGFILCGDWNAKHSWWGNQRACRRGVELLRSIHSNKKLNILATGGATHFPYTSRNRPSAIDIAVYRALTMTGLQTHSTIDLESDHLPIHIGLRVGRFPYKQTTMRLLPINANVKKFQNHLDKNVRLNTEIISGPDIEDAIDILNKNIYNASLAATHPPRRHQQQQRQGTNTNRMNHGRFKLTNETIRLLAIKRQRKREHMVMRTPLTRSRLSQAQNKLKKALRMDKKKQTNKMFEQIDATDRYKIQKLWRITNNIKRQPEPNWPLKIQATDNNNSRSNRTQWTKTSKEKAEVFAAYLEQRFSPIFSNTAEYRLQVNNEINTRQQTNDCDSGAGVAGVIPFRPITYTEVTKEIGCLTIKKAAGIDNIDNRVIKALPKKAILYLVMIYNCILRHGHFPRQWKCAAIKTILKPGKPTEDVASYRPISLLAGFSKIFERLLMYRLYECSEFAKAVPLHQFGFRKDHGTEQQLARVTQFILSAFEKKQYCSAVYIDIREAFDRVWHEGLLLNLARYCLIGCIMVLKSYLLDRTFIVHGNEGIKSRIGKVSAGVPQGSVLGPILYIIYTSDMPLPHIATPPNPTTTAATITNTETSITNPYNCSMLLSTFADDTVIMSSADILQTSYSANQTYLRQFTIWCNRWCIQINDSKSAHVVHTLRNLNSRMNYLTPRLNGQEIPSKPRQKYLGVHLDRKLHMQHHVTQLRCRLKALYNKLEWLIGNKSVLSVECKITIYKQMIAPIWRYALPIWGAMISDTQLRRIESTQNWILRKIVKASWWTRNKDIRDTYDIGTVDEIFHTTSKRFADSLAIHPNANARKLIASPYVPIRLDRQRYSLQLQQHVRPLQQLVQQSQEQQQLPTLLRMELEEEEANSLRMQQQQQQQTPQQQPARFSEMRINSLRRHYREGRITLEELKLAIREQPLVIQQLVLPRELAIQIYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLEGLQHQPNQSPDVEIVLDTPQQQQEQQLERPLPQPQQANLQQQRLTEDEQQLEHRLERLRQQLEREMDEAANNEPTQQQRTPEQQQSNQQQHTIALTENKNTNINPSNSVCANITNFSISQSIIIAPYSLINIATDAPWQQNQPTTTQQLRQQHSNLHQQHLQQQREVVEAPSSNNAQSTVRGAKRRRSSSTSCIEPKRRSPAAPDNQQQRQLHTLLGKRHSGGPAQHNCWPPKRQKLVQQQQQRQACLRRTRLGTWQLQMPHRLGIWLLLSCFGMQTHHKVPQKLVWAPPADYGQSSTNGRHLQIARRRPWHSWQRLQRRWSNCGRQTHRKARPYNILIHET
>Ylli_gag#LINE/Zorro 365-2548 RepBase name: L1-1_YL gi|46250580|emb|CAC85649.2| gag-like protein [Yarrowia lipolytica]
MNIYNRARPEKTFTMETAQAQASAGNSLGAPNPPPPDLSRGDGATSTETPNQTDIEKIQKNDKNDENNKKNDKNDKNDKKNDNNITLNAWKSKAEVKALLTSNPSTLKFNLNKERISEPLAAPNGRHTSGRFNVSYVASKENFFRRALDRSATPDWNLPISMFLEHLDNAAEVDEKDTISVLEGVIEKFDEIKGQVGLAEFDLSRHNLDIVPHLIDQINLEQDPEDCYQVGNGWHYLTSDALTDPHEQRMAVILETVSLIVEANTQDYRIMRKGSANPAGRRVLYYFNLPSYMKMERQTEDAFKIHLNAILNQFDVDIDQAIPGSSLLSGTLLMTSANHQNISGPVIAVRALLGSTLPQTIPDFFVNLDPTKARLTGSKLIKMHFANGDNICVKCKSTKHIREACPEKDMVTPKIFRTRAHQGTLPQRGKALASIHAPSTVEPPVQTRKFHHTPATHQWETVGTKSPRHRRTRDTSPQPTGQKPLRSYYNFEVLSDKTGEDTPEETEQTNQLPSTNQQHGTQNLPINIPASEEDTVPDDQETEQADVSMNGFDTQPDALAHPEVAPDVTQFLPPATPLNTEATNNGLPHDHTSPNTTNQTQPPPGSIHEGRPRGGHTTSSFSGEPSHTTLGKKHIAVFQTASSEVPVQILNPDRSENRLCWLPSQEVAKFIDGRCPTFLSTCHFKVFHDGATLSSVDEIVEPPNSPPNPPRVTTLHEVDTMLRPGQNQ
>Ylli_pol#LINE/Zorro 2554-6453 RepBase name: L1-1_YL gi|20513185|emb|CAC85650.1| reverse transcriptase [Yarrowia lipolytica]
MSFTSTTTPSKAPCKSTQAKMKSPNVKVITANIGGFKMAEALNRLPDTIVNIIRTTHYPDLVLLQETNWVDSSLQTAQQIISNSPYPGGRHYTLLGSTAGVSNRSVGVGLVYSDNVTITNFTTVFEYFPALDNRLCLADVHIKGTDRHLSLINVYAPNEQGASPFTNRQFYQSLDDYLRLQPCQYPLIAAGDWNAVASNDGRIGEKVTTHLKDFLANWDLLDTYTLISKHRKGLYTHTNNSRGAGRRLDQLHISSTLSQWIKSTQLVTNKQGHNITKSSHHAVQFVFNFGNLTQRQDRGPGTWRMPWWVFDTEYIAWLKFHVKSILKRYGPLKPSLKLQCLKENIKVTIQQEAKNRALRDSNHPDNRRREALMATASDWQAYPANEPYPMLHARVEQSKQQMEIHSLRNHQGRVKTDTSSLCDISARYFDNIFDRAADINDTDDSAFLDLFPEETRRVNTANPSLDSSFTKEEIFDTIKASTHNSAPGPDGIPYRFYRDCWDELGDLMTDVYNEAGADSPISTERNTAIIKLLYKSGDQADISNYRPISLINTEVKIYTQLINKAIQNILPDSIHGAQNGFVPGRHITNNLDTMDHFCNAYSQLNMGWVVGSLDFRKAYDTISQSWVIKTLRNVGVSELMINRILAVQQNAVTRINIRGVLSRPVRIKIGVRQGCPLSPTLFIIAVDALVRRLDREMFGLAPGLPLSHHHTTGHRPPQPPTHPEAVAAGHMKVSAFADDIAVFLNNIQDVATVGRVLCLFQRVSGLTLNPSKTVLQKIGPPDCFVPLTFIDAEWQRTIDATWPTDNNTRQAPTLRTSDNIFRYLGVHFGNRERLDTHYAQIKEDLKESLRRLSLWGLPYYSKAWMINIYFFSKLNFLGPYVSQIDNTFIRELNELACDKINKLSPDKTRKTFSNGFIQTPVGRGGLNLRDMGRFMVCLKAARAYRFFHGSSPALWDCTFQFYSRTHSLTQEKPHQRVDCRFPTGQAWGYAASPTMRDAIRASFELNKPLTAEHANPREDHEPSTTDTVNHRIWERNQVNVRAAESFREAHVDIAAARRYHPVRMVSTAEIDHLRWSMGPLTLENFMFHKTSSPDLPNFPHTLARPKKWTQRSDYGGISDDMVWQEVMHDLRKHYIADANKAQVLHLMRISRLPLVKWRYPDDHVFTKKNPGCGLCDKAIIQDLHEHIFCKCEVLLSMLTRMKIPSVDSLKDWIFTESKCGVLPSFPGHVNSDAPRKHQQVKTRKYLRELAYGIWKMERSLRYSGDDATLGHVQQGLLQFLKEAQMCFYDGQPPALHDERE
>Zorro3_gag#LINE/Zorro L1-1_CA 2-1829 in RepBase. gi|14286190|gb|AAK58882.1| unknown [Candida albicans]
MTTNGTNGFDFADKGDHPPRQSQENPPGNFQELPLDGGQIRKSSSNDGVSNNVEFNTNTNAHESWADYPESDQMDTDSSEYYTEDENEEGKIPKGPYHQFQNANKFTYFTPETATTLVAPNNNTQNTTTEQDNMSKTYASVAATFKTNLAKSQDKQEELRMSNFKVPQKAFDDLKRHNDAVFPEEVMTSDLSTIINKYGHEKVFDTIENTLITTAQNLEGYLSEYPENVMRKAFKYFTLKLSIEDKQTRDVCEEILGIREELMYIQRILDFNIMDKVMCFMPFTFEQMEGKLSSEKAKVRTIVENLELDFDGTVEHIKIDSAKRNRQLVAFKVPIHCRSLAERYFRQIFLHKEDVIVQQYAPIIEKVQLGRKGKTEENNHQLLTEYVCYFIVDLFSGQVPKRRIKIDNTKNKPSSYEQCTSRVLSNCKYCEYCRSMTHTKYHCPLIKPCTNCGVKGHKTTSCKKASSTNTSVLKRPETKPNFPILPPKVVNKTTSDDSQRKGSIAKTTSHTKGDNTEKMVTPSAQNENTTLQESIPVTITGHREAPTTPPVADTTAKKTMTTGVSEMDTSKHTISSNDEASPRKKLNVKEKPSNPEKDPGLNSPPNLQ
>Zorro3_pol#LINE/Zorro L1-1_CA 2007-5453 in RepBase. gi|14286189|gb|AAF73434.2|AF254443_1 reverse transcriptase [Candida albicans]
MKRNESYINSLTIGSKNIGSHQSTDFKKLLDIFLKLIGEHSMIDIWFIQEIRFVSQEQFNYINKILKQHNAQLRMHHFEDLTGFLIHSPHAKLKFKIRDNDNHHTTHFEGRISILDITLITNEDITLINNYLHSGNMDAQMTLLKAFIKYIANLKKHTNHNIIYGGDYNHIMSLDDVQLPSDQTRYIISKKESEIIQLMSNFYKKWKLQDAFQIRNNLQPTNFHSNKSVKKRLDRIYIDSRIRRKLRNCRILEEFKQISTHKIIAMSFQIQKEPILKVGNPRYSIPQWMSQDENIIKDLNNNEQSSLTPFSNWNGIINRIKEKVIFYEKYQRYIRAYIPHAGNFPDEKMLKFRFRPSFNFSIITEMQTESGNTVQDTEIMINLATKFYQDLFLVEDRHLESFTFVEQFDKKIDDTDKVLLEKAFIEENVYDHLLMINKKTAVGTDGISYQNLIELWPSLGESLIRAGNNILKYGTLPQQMSEVIITLIPKKSKTPIIENFRPISVISCAVRLLSSVIEKQLNPVLAKVIEKTQTGFLKERSISNSIYLLDMVLTRYQTSKTADAESAGFINLDFRKAFDSVHHDFILKVLQQVGFGPKATNFLMAITAKQKAKVSINNIEGPCFPLKRGVRQGNPISPLIFILILETFLARLSKEIEGIGVVNEVSSVAYTAYADDVIIFFKNKNDQERIQQLLEDFGRESGLYLNNNKTEVCYFNDIPEISFLPYVSKKLQLEKLTYLGVPMKKADEEFDPWTSFVLNLNAQIRMTPISDLPYQLIMKLMNIFIFSKLYYRDLHSPISTTAVSSIITTVQQRLPLYFKLQRLQTPNHLGGFGLMNPNHQVKGRRGKQIYLLYTQEDDLIIKFMRTKIQDILDNIAKDYYTMPTEPDKLIVYPWYLFGMGVSCHSSLQFRYLKERVYENLTKSEISWFEAWFQLVHYTGPPVETPIIIMSIEDYANLIIQPQTESIKLMSPNFEEQSLSEQTFHHTSRKLCPQAPIIPEGWGKHFDTIKSLTISDWTEFWKNMNKVQKQSVGSLQDYHLFILGYYSHYPFYPNYKKSEIHFCQLCNTGTDSIVHHIFECGETMELWSRHFNSQRTPQFIIGNKHLHKRDLYALNEYIKEVVQKVKRRRGSPILNQGERENVDAGTNVLV
